LOCUS E.coli 5213 bp RNA RNA ~?~???? DEFINITION Escherichia coli. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5213) Corresponding GenBank entry: J01695 Phylo:Eubacteria,Purple,gamma,3 BASE COUNT 389 a 352 c 487 g 314 t 3671 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- --|------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------AAA UUGAAGAGUU 661 (UGA-)U-CA U|GGCUC-AG AUUGAACGCU -G-GCGG-CA |GG-CC--UA ACAC-A-UGC 721 -AAGUCG-AA CGGUA|ACAG GAAGAAG(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------CUU G)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- -------CUU CUUUGCUG|A 961 C--GA-GU|G GCGGACGGGU GAGUAA--UG U|CUG-GGAA --AC---UGC CUGAU-GGAG 1021 GGGGAUAACU ACUG---(GA AA--)---CG GUAGCUAAUA CCGCAUA--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- -ACGUC(GCA 1141 A----)GACC AAAGAGGGGG ACC(UUCG)G G|CCUCUU-- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCCA UCGGAUGUG- --CCCAG-AU |--------- -GGGAUUA-- 1321 -GCUAGUAGG UG-GG(GUAA CGG------- ---------- ---------- ------)CUC 1381 ACCUA|---- GGCGA--CGA U|CCCUA-GC UG|---GUCU (GAGA--)GG AUGACCAGC| 1441 CACACU-GGA AC(UGAGA-C AC-)GGUCCA G|ACUCC--( UACG-)--GG AGG----C-A 1501 GCA|GUG-GG GAAUAUUGCA C-AAUGGGC( ---------- ----GCAA)G CCUGA-UGC| 1561 A|-GCCA-U- GC-CGC---- -GUGUAUGAA --GAAG-GCC (--------- UUCG------ 1621 --------)G GUUGUA-AAG -UAC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -----UUUCA GCGGGGAGGA AGGGAGUAAA G(UUAAUAC- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------C UUUG-CUCAU UGACGUUACC CGCAGAAGAA GCACC|-GGC 1921 -UAA-C---U CCGU-G(-CC AGCAGCC-GC -GGU-AA)-U ACGGAG|--- -GGU-GCA-- 1981 AGCGU-UAAU CGG--AAUUA CUGGGC|GUA AAGCGCACGC -A-GGCG|GU UUGUUA--AG 2041 |UCAGA--UG UGAAA----U CCCCGGG(-- --CUCAA)CC UGGGA----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------AC UGCAUCUGAU ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U GGCAAGC-UU 2281 G-----AGUC -UC-GUAG-A -GGGGG--GU -----|AGAA UUCCAG-GUG ---UAGCG(G 2341 UGAAA)UGC- GUA---GAGA UCUG-GAG-G AAU------- ----ACCGGU -GGC(-GAAG 2401 -)GC|G---- ----GCCCCC U-GGACG-AA GA---CUGAC GCU--CAGGU GCGAA-AGCG 2461 U-GGG---GA GCAAACAGG( AUUAGAUAC) CCUG-GUAG| -UCCA-CGC- CGUAAA-CGA 2521 U--GUCG-AC |UU|GGAGGU UGUGCC(-CU UGA------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)GGC-GU GGCUUCC-GG AGC(UAAC)G CGUUAAGUCG 2701 A-C|--C|GC C-UGGG-GAG UACGGCC(-- -GCAA--)GG UUA--AAACU CAAAUGAA-U 2761 UG|ACGGGG- GCCCGC---A CAAGCGGU|G GAGCAUGU-G |GUUUAA-UU CG(AUGCAAC 2821 G--------- ----)CGAAG A-ACCUUACC UGGUCUUGAC AUCCACGGA- --AGUUUUCA 2881 (-------GA GA-)UGAGAA UGUGCC(-UU CG)GGAA<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->CCG-UGAG A--C---AGG UGC-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-CU CGU-|GUU(G --UGA)AAUG UUGGG(UUA- 3181 AGU)CCC-G- C-AACGAGCG CAA-CCCUUA -----UCCUU UGUUGCCAGC GG---(uccg 3241 g-)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- CCG|GGAACU CAA-AGGAGA -CUGCCA-GU (GAUA-A)AC UGG-AGGAAG 3781 -----GUG-G GGAUGA-CGU C-AAGUCAUC A|UGGC|CCU UAC------- ---------G 3841 A-C-CA-GGG CU-ACA--CA -CGUGCUACA AU--GGCGCA U-ACAA-AGA GA--AGCGA- 3901 CCUC<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G CGA--)GAGC -AAGCGGACC UCAU-AAAGU GCG-UCGUAG 4021 ---------- -----UCCGG --AUUGG-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGCAAC-UC) G-AC-U--CC -A--UGAAG- -UCGGAAUCG 4141 C-U--AGUAA U-CGUGGA(- UCAGA-AU-- --)GCCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAC--GUUC 4261 CCGGGC-CU- UGUACACA-C -CGCCCGUCA C-ACC--AUG GGA-GUGGGU UGC-AAAAGA 4321 AGUAGGUAGC UUAACC---- ---------- ---------- -(uucg--)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- -------GGA GGGCGCUUAC 4561 -CAC--UUUG UGAUUCAUGA CUGG-GGU-G AAGUCGUAAC AAGGUAAC-C GUA-GG(GGA 4621 -A)CCU-GC- GGUUGGAUCA CCUCCUUA-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (1)-EUKARY 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (2)-DICTYO 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.D.disco 5213 bp RNA RNA 11-JAN-191 DEFINITION mitochondria,Dictyostelium discoideum. ACCESSION No information KEYWORDS No information. SOURCE mitochondria,Dictyostelium discoideum. ORGANISM mitochondria,Dictyostelium discoideum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: D16466 Dictyostelium discoideum mitochondrial SSU rRNA sequence (from Y. Tanaka) BASE COUNT 573 a 218 c 366 g 394 t 3662 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ----AAGAAA AAAAUGAGUU 661 (UGA-)U-UC U|GGCUC-CG AAUGAAUGCU -A-UCAG-UG |GG-CU--UU AUAC-A-UGC 721 -AAGUUG-AA CGcua|uu-- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------gaaa -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -----aau|a 961 g---A-GU|A GCAAAAAGGU GAGUAA--UG C|AUA-UGaa --uu---uua auaau-aauu 1021 uugggaaua- -------(aa ag-a)----- ---agaaauc cagaaua--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- -aaaa--gaa 1141 a-----gagg aacuugaaaa aca-guaa-g a-cuc----- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------Guua uuauaaaag- --CGUAU-GU |--------- -CGAAUUA-- 1321 -GGCAGUUGG UG-GG(GUAA AGG------- ---------- ---------- ------)CUU 1381 ACCAA|---- ACCUG--AGA U|UCGUA-GG UG|---GUUC (GAGA--)GA AUGAUCAUC| 1441 CACAUU-GGU AU(UGAAA-G AA-)CGACCA A|ACUC---( ugaa-)---G AGG----C-U 1501 GCA|GUA-AG GAAUAUUGGA C-AAUGAGC( ---------- ----GCAA)G CUUGA-UCC| 1561 A|-GCUA-C- AC-UGA---- -GUGAGGGAA --GAAg-u-- (--------- -aaa------ 1621 --------)- -gcgUA-AAC -CUC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ----UUUUAA -uaaggaaga uaa------- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ugacaaaaau uaaAGAAGAA GUCCC|-GGC 1921 -UAA-U---U UCGU-G(-CC AGCCGCC-GC -GGU-AA)-U ACGGAG|--- -GGG-GCA-- 1981 AGCAU-UAUU CGU--AAGGA UUGGGC|GUA AAGGGUGCGU -A-GGCU|GG UUCUCA-AAG 2041 |guauu--au augaa----a aacacu-(ga aaaaaga)-g gugug----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------gg uauaaaaaca a--------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|A AAGAACC-UA 2281 G-----AGUA -AA-GAUG-A -UGUAU--UU -----|AGAA GAACUA-AUC ---UAGAG(G 2341 UAAAA)UUCa auu---uagA UUAG-UUU-G ACU------- ---gacaguU -GGC(-GAAG 2401 -)GC|A---- ----AAAUAC A--agca-a- UA---CUGAC GCU--AAAGC ACGAA-GGUU 2461 C-AGG---GA GCAAAUCGG( AUUAGAGAC) CCGA-GUAG| -UCUG-AAC- AGUAAA-CGA 2521 U--GAGU-GU |UC|aauauu ------(-cu aaaa------ ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ -aguauu-ug AGU(UAAC)A CGUUAAACAC 2701 U-C|--C|GC C-UGAG-UAG UACGAUC(-- -GCAA--)GA UUG--AAACU CAAGGUAA-U 2761 UG|ACGGAA- CUUUGC---G CAAGCAGU|G GAUUAUGU-U |CAUUAA-UU UG(AUACAAC 2821 A--------- ----)CGAAA A-AUCUUACC CUCCAUUGAA ugacauaua- ---------- 2881 ---------- ---------- ---------- -------aaa-ug-u cuaac--AGG UGU-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-UU CGU-|GCU(G --UGA)GGUG UAACA(UUA- 3181 AGU)UGU-G- A-AACGAACG AAA-UCCUUA ----aguuca auuacgau-- ------auau 3241 a--------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 --------au cga-gaaaug gacagaagag ugugacauaa auuaa-a-uc acauugguag 3781 -----UUG-A GGAAGA-UGU C-AAGUCAGU A|UGGC|CCU UAU------- ---------A 3841 G-G-AG-GGG CU-UGA--AA -UGUAAUACA AU--GGUUUC U-ACAA-AAG GA--AGCGA- 3901 AAGU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G CAA--)GCUG -GAGCAAAAC CUA--AAAAG AAA-UCUUAG 4021 ---------- -----UUUGG --AUUUA-UU U-C(------ ---------- ---------- 4081 ---------- ---------- UGCAAC-UC) G-AA-A--UA -A--UGAAA- -GCGGAAUUG 4141 C-U--AGUAA U-CGUAGA(- UCAUA-AG-- --)GCUUCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--UUG- 4261 UCAAAG-UU- AGUACAUA-C -CGCCCGUCA C-ACC--ACG Gaa-aucaau cuuuuucaga 4321 uacauuauua uguuaa-uua ucuaaaguu- cuuaggguau -aacagucuc u--------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ------uuug aag--agcaa uuagaaug-- gaggagguua auuguuaauu 4561 aucgaacaau agagggguaa CUGG-GGU-A AAGUCGUAAC ACGGUAGC-U GUU-GG(GGA 4621 -A)CCA-GU- AGCUGGAAGU A--------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (2)-MYXOMY 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.P.polyc 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Physarum polycephalum. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Physarum polycephalum. ORGANISM Mitochondrion Physarum polycephalum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X75592 DEFINITION P. polycephalum M3C mitochondrial SSU gene for 17S ribosomal RNA(pSSU) SOURCE slime mould ORGANISM Physarum polycephalum Eukaryota; Plantae; Thallobionta; Myxomycota; Myxomycetes; Myxogastromycetidae; Physarales; Physaraceae. REFERENCE 1 (bases 1 to 1861) AUTHORS Mahendran,R., Spottswood,M.S., Ghate,A., Ling,M., Jeng,K. and Miller,D.L. TITLE Editing of the mitochondrial small subunit rRNA in Physarum polycephalum JOURNAL EMBO J. 0, 0-0 (1993) REFERENCE 2 (bases 1 to 1861) AUTHORS Miller,D.L. TITLE Direct Submission JOURNAL Submitted (03-NOV-1993) MILLER D. L., The University of Texas at Dallas, Molecular and Cell Biology Program, 2601 N. Floyd Road, Richardson, Texas, U.S.A., 75080 FEATURES Location/Qualifiers source 1..1861 9 /organism="Physarum polycephalum" /strain="M3C" /clone="pSSU series" /dev_stage="Plasmodia" /clone_lib="PCR generated cDNA library of D. Miller" rRNA 1..1861 /product="mitochondrial 17S ribosomal RNA" /gene="SSU" /standard_name="mitochondrial small subunit rRNA" /label=MT-SSUrRNA /citation=[1] /note="The rRNA sequence is produced by the insertion of nucleotides not encoded by the mtDNA gene (RNA editing)" misc_feature group(33,66,127,162,177,214,238,260,288,309,502,658,675, 807 ,855,865,914,935,951,1068,1111,1128,1160,1266) /evidence=EXPERIMENTAL /label=Cinsert1 /citation=[1] /note="Cytidine insertions - RNA editing" misc_feature group(1303,1323,1355,1409,1431,1461,1480,1506,1525,1574, 1607,1624,1638,1679,1761,1790) /evidence=EXPERIMENTAL /label=Cinsert2 /citation=[1] /note="Cytidine insertions - RNA editing" misc_feature one-of(333,334) /evidence=EXPERIMENTAL /label=Uinsert1 /citation=[1] /note="Uridine insertion - RNA editing" misc_feature one-of(729,730,731) /evidence=EXPERIMENTAL /label=AAinsert1 /citation=[1] /note="Adenosine dinucleotide insertion - RNA editing" misc_feature one-of(1040,1041,1042,1043) /evidence=EXPERIMENTAL /label=CUinsert1 /citation=[1] /note="Cytidine/uridine insertion - RNA editing" misc_feature one-of(1819,1820,1821) /evidence=EXPERIMENTAL /label=AAinsert2 /citation=[1] /note="Adenosine dinucleotide insertion - RNA editing" BASE COUNT 558 a 324 c 418 g 561 t 3352 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------g uuuuaauaua auaauGAGUU 661 (UGA-)U-CC U|GGCUC-cG AGAGAAUGCU -A-GCAA-CU |UA-CU--UG AUAC-A-UGC 721 -UAGUCG-AA CGcuu|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------aua u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -------g|a 961 g---C-GU|G GCGUACGAGC GACAAG--GG C|AAA-Gaua --ga--aaau acau--cag- 1021 ucaagg---- -------(ga aa-u)----- -------ccu aga------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- -uuuaa(-aa 1141 ga---)uuau a--------- -------ucg ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------cuga auguaa-gg- --UCUUU-GU |--------- -GAGAUUA-- 1321 -GGUUGUUGG UA-AG(AUAA AAG------- ---------- ---------- ------)CCU 1381 ACCAA|---- GCCGA--UGA U|CUCUA-GC UG|---GUCU (GAGA--)GG AUGUACAGC| 1441 CGCGUC-GGA AA(UGCAA-U AA-)GGUCCG G|ACUCC--( CUCG-)--GG AGG----C-U 1501 GCA|GUA-GG GAAUCGUGAA C-AAUGUGC( ---------- ----UAAC)G CUUGA-UUC| 1561 U|-AUAA-U- GU-UGC---- -gugggggau acaaaa-aac a------uua uuuuau---- 1621 --------ac uuauuguuuu auaaacaaau uuauauauaa aauagugaua auucuagcaa 1681 cgacuuaagc gcaauaaaag uuuccguaaa aagagauuuu uaucuguguc uucuguagcg 1741 ugccuuucua guagacggca aguugucuua aaccccuuuu uuuacgauua uaaugacugu 1801 aguuaguaua uaucuauuua ucaagaugag gguugguaaa uuacauuuug uuuguuagac 1861 uaaaauacuc gagcaaaaau gccuuaugcu gcuuugcuua aaaauaucAA ACCCC|-GGC 1921 -UAA-C---U UCGU-G(-CC AGCAGCC-GC -GGU-AA)-A ACGGGG|--- -GGG-GUU-- 1981 AGUGU-UAUU CGU--GAUGA CUGGGC|GUA AAGGGUACGU -A-GGCA|ga uaauug--aa 2041 |aauac--ag uaaaa----a acugagg(-- --uaaac)cc ucuu------ ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------ca uucuguauuc ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------ac|u cauuauc-uu 2281 g-----aguu -ca-gaag-g -cgguu--ua u----|UGAA UUCUCG-AAG ---GAAGG(G 2341 UGAAA)UCU- GUU---GAUA UCUG-GAA-G ACA------- ----UUCGAU -AGC(-GAAA 2401 -)GC|A---- ----acaucc g-auucu-g- au---CUAAC GCU--CAGGU ACUAA-AGUA 2461 U-GGG---GA UCAAAUAGG( AUUAGAGAC) CCUA-GUAG| -UCCA-UAC- CUUAAA-CAA 2521 U--GAGU-GU |UC|aacguc uuuaa-(uau agucaauaua u--------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-uu-ag gggguuu-aA AGC(UAAC)G CGUGAAACAC 2701 U-C|--C|GC C-UGGG-GAA UGUGGCC(-- -GCAA--)GG UCU--AAACU CAAAGGAA-U 2761 UG|ACGGUG- ACUUAU---A CAAGGGGU|G GAGCAUGU-G |GUUUAA-UU CG(ACAUACC 2821 G--------- ----)CGCAA A-ACCUUACC AAUUUUUG-u aucugguuuc uu-------- 2881 ---------- ---------- ---------- -------uaa-cc-a a--ugacaAG AGC-UG|CA- 3121 |UG|-AU--U |G------UC GU-AA|G-UU CGU-|GCC(G --UGA)GGUG UUGGG(UUC- 3181 AUU)CCAUA- --AACGAACG CAA-CCCUUU -----ugauu aguugcauaa uggau(---- 3241 --)<-gaaag uuuaaacugg au-------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------aucc auguucacua guucaaccag -cccuuc-ua (ccuu--)ua ggg-AUUAAG 3781 -----GAC-A GGUCCA-CGU C-AAAUCAUU A|UGGC|CUU AAU------- ---------A 3841 G-A-UU-GGG CU-ACA--CA -UGUGCUACA UU--GAUGAU CGACAA-CAA GA--AGCAA- 3901 UGGC<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)GCCU -GAGCAAAUC UUUA-AAAGA -CA-UUUCAG 4021 ---------- -----UCCGA --AUUGU-UC U-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-uc) A-AG-A--GC -A--UGAAG- -CCGGAAUCU 4141 C-U--UGUAA U-CGUGGA(- UCAUU-AC-- --)GCCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GUAC 4261 AAAAGU-CA- CGUACAGA-C -CGCCCGUCA U-GCU--AUG GAA-ACUAUU UGA-AGUAGA 4321 Agu-uacaag guuuca-a-- ---------- ---------- -(------)< uuguuucga- 4381 uagac-cacc uuauugaaag uuuuc-au-- aagg-ccuug aca-uucug- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ------uugg cuuuguacac 4561 -gac--UCUU UAUUUAGGGA CUGG-AGU-A AAGUCGAAAC AGGGUAGU-G GUA-GA(AGA 4621 -A)UCU-GC- UGCUGGACCA UUAUUA---| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (2)-CROWN 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (3)-ACANTH 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.A.caste 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Acanthamoeba castellanii. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Acanthamoeba castellanii. ORGANISM Mitochondrion Acanthamoeba castellanii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U03732 BASE COUNT 500 a 226 c 358 g 476 t 3653 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -------aau uccauuacuu guauaaacaa ucguuGGGUU 661 (UUA-)U-UC U|GGCUC-CG AGUGAACGCU -G-GUAA-CA |UA-UU-UUA ACAC-A-UGC 721 -AAAUCG-AA CGAA-|---- --AAGUA(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------AAU U)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- -------UAC UU------|U 961 A---A-GU|G GUGACCUGGU GAGUAG--UA U|AGG-AGAA --UU---GAA GUGUG-GGUU 1021 AGG------- ---C---(UA AA-U)---U- ---------- CCUAAAA--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- -UUAUU(AAA 1141 -----)AAUA AAAGAU---- ---(UUAU)- -----AUC-- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCCU ACAAUAGAG- --CUUCU-AA |--------- -AGGAUUA-- 1321 -GGUAGUUGU UG-UA(GUAA UUA------- ---------- ---------- ------)UUC 1381 AACAA|---- GCCGA--CGA U|GCUUA-GC UG|---GUUU (GAGA--)GA AUGAUCAGC| 1441 CACAUU-GGG AC(UGAAA-A -C-)GGCCCA A|GUCUU--( CUAA-)--AA GGG----C-A 1501 GCA|GUG-GA GAAUAUUUGA C-AAUGGGC( ---------- ----GAAA)G CUUGA-UCG| 1561 A|-GUAA-U- GU-UAC---- -GUGGGUGAU CAGAAG-GCU (--------- UAAU------ 1621 --------)U GCCGUA-AAA -CUC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ----GUUUCG UCAAGGAUUA UAA------- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- --------UG CAAUCGUACU UGAAGGAGAA GCCCU|-GAC 1921 -UAA-C---U UCGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGGAG|--- -AGG-GCG-- 1981 AGUGU-UAUU CGC--AUUGA CUGGGU|GUA AAGGGUGCGU -A-GGUG|GU UUGUUA--AG 2041 |UUUCA--AA GUAAA----U GUUAAAC(-- --AUAAA)GU UUAA------ ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------AG GCUUUUUAAU ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U AACAGAC-UA 2281 G-----AGUU -UA-UUAG-A -AGAUA--GC -----|UGAA CAUUAA-GUG ---UAAAG(G 2341 UGAAA)UUU- UUC---GAUA UUUA-AAG-G ACA------- ----ugcaau aGGC(-GAAG 2401 -)GC|U---- ----GCUAUC U-AUUUU-AA UA---CUGAC ACU--GAGGC ACAAA-AGCA 2461 U-AGG---GA UCAAACAGG( AUUAGAGAC) CCUG-GUAG| -UCUA-UGC- CCUGAC-CGA 2521 U--GAAU-AU |UG|AUUAUA CU----(-GC GA-------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----G GUGUAAU-UA AGC(UAAC)G CGU-AAAUAU 2701 U-C|--C|AC C-UGAG-UAC UACGACC(-- -GCAA--)GG UUA--AAACU CAAAGAAA-C 2761 UG|ACGGAA- GAUUGU---A UAAGCGGU|G GAGUAUGU-G |GUUUAA-UU UG(AUAUAAC 2821 G--------- ----)CAAAG A-AUCUUACC AACCCUUGAA -UACAAGUU- ---AUUUUAG 2881 (cugu---ga ua-)AUGGAA U--------- -------ACU-UG-U A--C---AGG UGC-UG|CA- 3121 |UG|-GU--U |G------UC GG-CA|G-UU CGU-|GUU(G --UGA)AAUG UUUUG(UUA- 3181 AUU)CAU-U- U-AACGGACG UAA-CCUUCA -----GCUUU AU-uuguu-- -----(uuug 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-aaaaa AUA-GAGCAA -UAUUAA-UU (UGAA--)AA UUA-AUUGA- 3781 -----GAG-G AGAAGA-AGU C-AAAUCAUU A|UGGC|CUA UAU------- ---------A 3841 G-G-UU-GGG CU-ACA--CA -CGUACUACA AU--GGUAAU U-ACAA-UGU GA--AGCGA- 3901 AAAU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G CGA--)GUUU -UAGCUAAUC AU-U-AAAAA UUAaUCUUAG 4021 ---------- -----UUCUG --AUUAC-UC U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAg-uc) G-AG-A--GU -A--UGAAG- -UAGGAAUCG 4141 C-U--AGUAA U-CGCAGA(- AUAGA-AU-- --)GUUGCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--AUUC 4261 UCAAUC-UU- UGUACACA-C -CGCCCGUCA C-GCC--AUG GGA-AUUggu uug-auuaga 4321 agugguauag gc------uc agauucuga- ugucuuuuaa -(uuuuuu)< uuaaaguua- 4381 ucgca-ucuu gg-------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- uacuaauuac 4561 -gac--aauu agauuAAGGA CUGG-GGU-G AAGUCGUAAC AAGGUAGC-G GUA-GG(GGA 4621 -A)CCU-GC- UGCUGGACAA AA-------| UUUUUUUAAA GG~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (3)-ALVEOL 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (4)-Apicom 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.P.falci 5213 bp RNA RNA 20-JAN-1992 DEFINITION Plasmodium falciparum. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium falciparum. ORGANISM Plasmodium falciparum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M76611 BASE COUNT 123 a 81 c 103 g 122 t 4784 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- |--------- ---------- 721 ---------- -----|---- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- ---------- ---------- -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- -|-------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- -|-------- ---------- ---------- 1501 ---|------ ---------- ---------- ---------- ---------- ---------| 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- -auuu|-GAU 1921 -CCA-U---A CAGU-C(-CC AGCGACA-GC -GGU-UA)-U ACUUUG|--- -GAAgagucg 1981 aguau-uauc cau--ccaug ucaGGC|GUu aaaagcguuc -g/....... ......-... 2041 |......... .....----. .......(-- -......).. .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .---...... -......... -.....--.. -----|.... ......-..- -----...(. 2341 .....).... ..----.... ....-....- ------.... .......... ....(-.... 2401 -)..|..... .......... .......... ..---..... ...--..... .....-.... 2461 .-...---.. .........( .........) .........| -....-...- ......-... 2521 .--....-.. |..|...... ......(... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... ...)...... .......... ...(....). .......... 2701 .--|--u|GC C-ugga-ggu uacgucca-- u-ac------ aguu-auaag caagugga-A 2761 UG|UUAGAA- GCAAAC---A CUAGCGGU|G GAACACAU-U |GUUUCA-UU UG(AUAGUAA 2821 A--------- ----)CACUA U-ACCUUACC AAUCUAUUUG /--------- ----...... 2881 (....---.. ..-)...... ......(... ..)....<.. .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .>........ .--.---... ...-..|..- 3121 ...|-..--. |..-...... .....|.-.. ....|...(. .-...).... .....(...- 3181 ...)...... --........ .......... .......... .......... .....(.... 3241 ..)<...... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... ......---- 3361 ------.... ..-------- ------.... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ---------- ---------- ---------- ----...... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 ......>... ...|...... .......... .......... (....-.).. .......... 3781 ........-. .......... ....----/u c-aaau|ugg AUG------- ---------G 3841 U-G-UU-GG- cu-ggg--ca -uuuaaucca cu--cuuuu- ---------- ---------- 3901 ----(--- -----)---- ---------- ---------- ------ag-- 4021 ---------- -----gaUUU --GAcgg-uc a-a(------ ---------- ---------- 4081 ---------- ---------- -cucaa-ua) u-ug-g--cu -gcuggAAG- -UAGAAAUCG 4141 U-U--AUUAA G-CGUCAG(- GAAGU-CC-- --)UGGACGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -u-------- 4261 --UUGC-CU- UGUACACA-C -CGCUCGUCA C-GCA/aucg acu-cgu--- ---------- 4321 ---------- ---------- ---------- ---------- ---------- gagguaaaa- 4381 gaa------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- -----ac-ag ucgg-UGC-G AAGUCGUAAC AUGGUAGU-U GAC-AG(UGA 4621 -A)CUU-GU- AGCUG----- ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (4)-CILIOP 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.P.aurel 5213 bp RNA RNA 25-JUL-1994 DEFINITION Mitochondrion Paramecium aurelia.; 5.8S ribosomal RNA; apocytochrome; apocytochrome b; atp 9 gene; ATP synthetase; cytb gene; cytochrome c oxidase; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; dehydrogenase; dicyclohexylcarbodiimide-binding protein; NADH dehydrogenase; ND1 protein; ND2 protein; ND3 protein; ND4 protein; ND5 protein; ndh1 gene; ndh2 gene; ndh3 gene; ndh4 gene; ndh5gene; oxidase; P1 gene; P1 protein; psbG gene; ribosomal protein; ribosomal protein L14; ribosomal protein L2; ribosomal protein S12; ribosomal protein S14; ribosomal RNA; ribosomal RNA large subunit; ribosomal RNA small subunit; synthetase; transfer RNA; transfer RNA-Phe; transfer RNA-Trp; transfer RNA-Tyr. ACCESSION X15917 KEYWORDS 5.8S ribosomal RNA; apocytochrome; apocytochrome b; atp 9 gene; ATP synthetase; cytb gene; cytochrome c oxidase; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; dehydrogenase; dicyclohexylcarbodiimide-binding protein; NADH dehydrogenase; ND1 protein; ND2 protein; ND3 protein; ND4 protein; ND5 protein; ndh1 gene; ndh2 gene; ndh3 gene; ndh4 gene; ndh5gene; oxidase; P1 gene; P1 protein; psbG gene; ribosomal protein; ribosomal protein L14; ribosomal protein L2; ribosomal protein S12; ribosomal protein S14; ribosomal RNA; ribosomal RNA large subunit; ribosomal RNA small subunit; synthetase; transfer RNA; transfer RNA-Phe; transfer RNA-Trp; transfer RNA-Tyr. SOURCE Mitochondrion Paramecium aurelia. ORGANISM Mitochondrion Paramecium aurelia. REFERENCE 1 (bases 1 to 40469) AUTHORS Pritchard,A. TITLE Direct Submission JOURNAL Submitted (21-JUL-1989) to the EMBL/GenBank/DDBJ databases. Pritchard A., University of Colorado Health Science Centre, Department of Microbiology, Denver CO 80262, U S A STANDARD No information REFERENCE 2 (bases 1 to 40469) AUTHORS Pritchard,A.E., Seilhamer,J.J., Mahalingam,R., Sable,C.L., Venuti,S.E. and Cummings,D.J. TITLE Nucleotide sequence of the mitochondrial genome of Paramecium JOURNAL Nucleic Acids Res. 18 (1), 173-180 (1990) STANDARD No information REFERENCE 3 (bases 1 to 40469) AUTHORS Valverde,J.R., Marco,R. and Garesse,R. TITLE A conserved heptamer motif for ribosomal RNA transcription termination in animal mitochondria JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91 (12), 5368-5371 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X15917 For overlapping sequences see accession numbers <K00904>, <M15275>, <M15220>, <K01751>, <K01749>, <X04157> and <M26930>. NCBI gi: 13256 BASE COUNT 559 a 271 c 348 g 496 t 3539 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 -------uuu aguugcagcc aggcugcaua cuuggaugua agaauucuuu uuuagGAGUG 661 (UGA-)U-CU U|AGCUU-UG AUUUAACGCU -A-AUCA-AA |UG-CA--UU ACAC-A-CGC 721 -AAGUUU-UA UUuua|caca agaaccu(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)uc------ 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- -------uuc uuugc(uuaa aau)-gcaaa gaucuagu|u 961 uuaaA-AU|A GCGUAUUGGU GCGUAA-aAU A|UGU-CUuu --uu---auu CGUAU-UGUA 1021 CCU----U-- --AG---(au ag-g)---CU ---------- AGGU------ ---------- 1081 ---------- ------uuuc uuccuuuuaa gaagu(uuaa ugccac)cca aaaaaaauuu 1141 u---uuaaaa aaaucgauac uua(agua)u ugaacucuuu uuuugau--- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------CCAA UAGGAAAAA- --AGAUA-UA |g-------- -AGCGCUU-- 1321 -CGAAUUCGA AG-GG(g--- -gg------- ---------- ---------- ------)CCA 1381 CUUGG|---- GCCUC--CUG C|GCUUA-GC UG|---AUUU (GUGA--)GA AGAAUCAGC| 1441 CACAUACAGG UA(UGUGA-- AA-)GACCUU A|Uc-----( u-cg-)---- -gA----C-A 1501 GAA|GUG-gg gaauuUUGGG C-AAUGCGC( ---------- ----UUAA)G CGUGA-CCC| 1561 A|-GCAA-A- UU-GAU---- -GUUGC-gAA --GAAa-aua (--------- agug------ 1621 --------)a gg-ugc-cu- -GCA|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ----gcaaug ugggau---- ---------- ---------- -augccucuu ugacuuuuuu 1801 uaaacgcagg ccagaaacga guauaauuaa gcuaa----- ---------- ---------- 1861 ---------- ---------- ---------- --------gu uuuguuagAA GCGAU|-GGC 1921 -CAA-U--AC AUGU-G(-CC AGCAGCC-GC -GGU-AA)-U ACAUGA|--- -GUA-GCU-- 1981 AGCGU-UAAU CGU--CCUUA UUGAGC|GUA CAGAGUGAGU -C-GGCG|GU Cauaac-aau 2041 |uaauaacua uuuuu----- -------(-- ---auau)-- ----a----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------aa aaga------ --uauuaa-- ---------- 2221 ---------- ---------- ---------- ---------- ------ua|a aaagGAC-UA 2281 G---UGAUUU -UU-UUUU-A -UGUAA--GU -----|UGAG CUUGUA-AAC ---UAGUG(A 2341 UAAAA)UAC- AGG---GAGU UUAC-AGG-A ACA------- ----UUCGAC --GC(-GAAA 2401 -)GC|G---- ----ACUAAC A-AUUAA-A- AA---AUGAC GCU--AUAUC ACGAA-AGUA 2461 U-AGG---UA AUGAAAAGG( cauuuuaaa) CCUA-GUAG| -UCUA-UAC- UGUAAA-AGA 2521 U--GAGU-AU |UU|------ ------(-aa uac------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ --------UA AGU(UAAC)A CA-aAAAUAC 2701 U-C|--C|GC U-UGGG-UAG UAAAGCC(-- -GCAA--)GU CAG--AAACU UAACAGAA-U 2761 UG|GCGGGG- ACUUGU---U CAAACGGU|G GAGCAUGU-G |GUUUAA-UG CG(AUAAUCC 2821 A--------- ----)CGUAA A-ACCUUAgC AGCGU-uaaa uuuuuuucuu uaguuaagcu 2881 (-------uc au-)ggcuaa aa-uuu(-uu ag)aaa-<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->aaa-ag-a g--A---UGG UAU-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-UU CGU-|GUU(U --UGA)AAUU UAGAA(UUA- 3181 AGU)UUUAU- A-AACGAACG CAA-CCCUUG -----UUUUG UAUG------ -----(uuu- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|----AA UAC-AAAAUA aaugauu-aa (-gga-a)uu auucauuuu- 3781 -agcuagA-A GGCUGA-AGU CAAAGUCCUU A|CGGU|CUG CGU------- ---------A 3841 C-G-CU-GGG CU-ACA--CA -CGUGUUACA AU--GGUAAA A-ACAA-UAG Aa--aaaca- 3901 aagc<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u cua-a)ccuu uaguu----U UU-A-AAAAA UUA-CCACAG 4021 ---------- -----UACGA --AUUGU-UU U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-uu) G-GA-A--GC -A--UGAAG- -AAGAAAUCG 4141 U-U--AGUAA U-CGCAAA(- UAAGU-AU-- --)G-UGCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--UAAG 4261 UCAAGU-CC- UGCACACA-C -UGCCCAUCA C-GCU--CAA AGA-GUUuua aau------- 4321 ---------- ---------- ---------- ---------- -(------)< cuagaagcu- 4381 gaauu-uagg augugacccu acccauuu-- uuuu-uuuua aaa-aaacuc gccggugcac 4441 caaacac-cg guguucuaaa caagcu-acu uguugucagc acaaagaaga guaaaggcga 4501 aacc------ ---------- -->------- ---------- ---------- ---------- 4561 ---------a uuugaAAUGA UCGG-AGU-G AAGUUGACAC AAGGUACC-G GUA-UG(GGA 4621 -A)CUU-GC- CGGUGGAGCA ---------| aggugaacag accaaugcau gcacc~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.prima 5213 bp RNA RNA 30-SEP-1988 DEFINITION Mitochondrion Paramecium primaurelia.; 13S ribosomal RNA; 16S ribosomal RNA; ribosomal RNA. ACCESSION K01750 KEYWORDS 13S ribosomal RNA; 16S ribosomal RNA; ribosomal RNA. SOURCE Mitochondrion Paramecium primaurelia. ORGANISM Mitochondrion Paramecium primaurelia. REFERENCE 1 (bases 1 to 1718) AUTHORS Seilhamer,J.J., Olsen,G.J. and Cummings,D.J. TITLE Paramecium mitochondrial genes: I. Small subunit rRNA gene sequence and microevolution JOURNAL J. Biol. Chem. 259, 5167-5172 (1984) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: K01750 The overall rRNA gene sequence was 94% conserved between two species (primaurelia and tetraurelia), and the nucleotide differences consisted of 53% transitions, 37% transversions, and 9% insertions plus deletions [1]. These subsitutions were somewhat clustered, and the two most divergent regions coincided with the gene boundaries. According to nuclease S1 data, the small subunit rRNA gene starts in the region (bases 25 to 45) and stops in the region (bases 1703 to 1716). Using tentative assignments of bases 30 (start) and 1710 (stop), the small subunit rDNA spans about 1680 bases [1]. BASE COUNT 560 a 277 c 341 g 509 t 3526 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 -------uuc uagccuuaau aacuaaaauu uacggaugua aggauuccuu uuuagGAGUG 661 (UGA-)U-CU U|AGCUU-UG AUUUAACGCU -A-AUCG-GG |UG-CA--UU ACAC-A-CGC 721 -AAGUUU-UA UUuua|caca agaaccu(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)uc------ 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- -------uuu uuugc(uuaa aau)-gcaaa gaucaagu|u 961 uuaaA-AU|A GCGUAUUGGU GCGUAA-aAU A|UGU-CUuu --uu---auu CCUAU-UGUA 1021 CCU----U-- --AG---(au ag-g)---UU ---------- AGGU------ ---------- 1081 ---------- -------uuu uuuauuuuag cuagu(uuaa aucccc)acc cccaaaagac 1141 u-uuuaaaga aaa--ucgau ccu(uaa-)g auuaaacuuu uuuuuugau- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------CCAA UAAGAAAAA- --AGAUA-UA |g-------- -AGCGCUU-- 1321 -CGUUUUCGA AG-GG(g--- -gg------- ---------- ---------- ------)CCA 1381 UUUGG|---- GCUU---CUG C|GCUUA-GC UG|---AUUU (GUGA--)GA AGAAUCAGC| 1441 CACAUACAGG UA(UGUGA-- AC-)GACCUU A|Uc-----( u-cg-)---- -gA----C-A 1501 GAA|GUG-GG GAAUUUUGGG C-AAUGCGC( ---------- ----UUAA)G CGUGA-CCC| 1561 A|-GCAA-A- UU-GAU---- -GUUGCGGAA --GAAa-aua (--------- agcg------ 1621 --------)a ggguac-cuC -GUA|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ----gcaaua cgagcu---- ---------- ---------- -uagccucuu uaacuuuuuu 1801 uaaacgcagg ccagaaacga guauaauuaa gcuaa----- ---------- ---------- 1861 ---------- ---------- ---------- --------gu uuuguuagAA GCUAU|-GGC 1921 -CAA-U--AC AUGU-G(-CC AGCAGCC-GC -GGU-AA)-U ACAUGA|--- -GUA-GCU-- 1981 AGCGU-UAAU CGU--CUUUA UUGAGC|GUA CAGAGUGAAG -C-GGCG|GU Cagaac-aau 2041 |uaauaacua uuuuu----- -------(-- ---auau)-- ----a----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------aa aaua------ --uauuaa-- ---------- 2221 ---------- ---------- ---------- ---------- ------ua|A AAAGGAC-UA 2281 G---UGAUUU -UU-UUUU-A -UGUAA--GU -----|UGAG CUUGUA-AAC ---UAGUG(A 2341 UAAAA)UAC- AGG---GAGU UUAC-AGG-A ACA------- ----UUCAAC --GC(-GAAA 2401 -)GC|G---- ----ACUAAC A-AUUAA-A- AA---AUGAC GCU--CUAUC ACGAA-AGUA 2461 U-AGG---UA AUGAAAAGG( cauuuuaac) CCUA-GUAG| -UCUA-UAC- UGUAAA-AGA 2521 U--GAGU-AU |UU|------ ------(-aa uac------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ --------UA AGU(UAAC)A CA-aAAAUAC 2701 U-C|--C|GC U-UGGG-UAG UAACGCC(-- -GCAA--)GU CAG--AAACU UAACAGAA-U 2761 UG|GCGGGG- ACUUGU---U CAAACGGU|G GAGCAUGU-G |GUUUAA-UG CG(AUAAUCC 2821 A--------- ----)CGUAA A-ACCUUACC AGCGU-uaaa uuuuuuucuu uaauuaagcu 2881 (-------ua au-)ggcuga aa-uuu(-uu ag)aaa-<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->aaa-ag-a g--A---UGG UAU-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-UU CGU-|GUU(U --UGA)AAUU UAGAA(UUA- 3181 AGU)UUUAU- A-AACGAACG CAA-CCCUUG -----UUUUG UAUU------ -----(uuu- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|----AA UAC-AAAAUA aaugauu-aa (-gga-a)uu auucauuuu- 3781 -agcuaaA-A GGCUGA-AGU CAAAGUCCUU A|CGGU|CUG CGU------- ---------A 3841 C-G-CU-GGG CU-ACA--CA -CGUGUUACA AU--GGUAAA A-ACAA-UAG AA--Aaaca- 3901 aagc<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u cac--)ccuu uaguu----U UU-A-AAAAA UUA-CCACAG 4021 ---------- -----UACGA --AUUGU-UU U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-uu) G-GA-A--GC -A--UGAAG- -AAGAAAUCG 4141 U-U--AGUAA U-CGCAUA(- UAAGU-AU-- --)GCUGCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--AAAG 4261 UCAAGU-CC- UGCACACA-C -UGCCCAUCA C-GCU--CAA AGA-GUUuca aau------- 4321 ---------- ---------- ---------- ---------- -(------)< cuggaagcu- 4381 gaauu-uagg augugacccu acccauuu-- uuuu-uuuua aaa-aaauuc gccagugcac 4441 aagugcgcug guguucuuaa caagcuuucu uguuguuagc acaaagaaga guaaaggcga 4501 aacc------ ---------- -->------- ---------- ---------- ---------- 4561 ---------a uuugaAAUGA UCGG-AGU-G AAGUUGACAC AAGGUACC-G GUA-UG(GGA 4621 -A)CUU-GC- CGGUGGAGCA ---------| UGAUGAACAG ACCAAUAUAA AUGCCcacac 4681 acgg------ ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.tetra 5213 bp RNA RNA ~?~???? DEFINITION Mitochondrion Paramecium tetraurelia. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Paramecium tetraurelia. ORGANISM Mitochondrion Paramecium tetraurelia. REFERENCE 1 (bases 1 to 1718) AUTHORS No information JOURNAL mt.P.tetraurelia:who:published STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5213) Corresponding GenBank entry: K01751 Phylo:Mitochondria,Protozoan,Paramecium DEFINITION Paramecium tetraurelia mitochondrial small subunit rRNA gene. SOURCE Paramecium tetraurelia mitochondrial DNA (stock 51). ORGANISM Mitochondrion Paramecium tetraurelia Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; Hymenostomata; Hymenostomatida; Tetrahymenina; Glaucomidae. REFERENCE 1 (bases 1 to 1716) AUTHORS Seilhamer,J.J., Olsen,G.J. and Cummings,D.J. TITLE Paramecium mitochondrial genes: I. Small subunit rRNA gene sequence and microevolution JOURNAL J. Biol. Chem. 259, 5167-5172 (1984) COMMENT [1] the overall rRNA gene sequence was 94% conserved between the two species (primaurelia and tetraurelia), and the nucleotide differences consisted of 53% transitions, 37% transversions, and 9% insertions plus deletions. These subsitutions were somewhat clustered, and the two most divergent regions coincided with the gene boundaries. [1] according to nuclease S1 data, the small subunit rRNA gene starts in the region (bases 23 to 44) and stops in the region (bases 1698 to 1713). NCBI gi: 342986 FEATURES Location/Qualifiers source 1..1716 /organism="Paramecium tetraurelia" /mitochondrion BASE COUNT 559 a 272 c 347 g 497 t 3538 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 -------uuu aguugcagcc angcugcaua cuuggaugua agaauucuuu uuuagGAGUG 661 (UGA-)U-CU U|AGCUU-UG AUUUAACGCU -A-AUCA-AA |UG-CA--UU ACAC-A-CGC 721 -AAGUUU-UA UUuua|caca agaaccu(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)uc------ 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- -------uuc uuugc(uuaa aau)-gcaaa gaucuagu|u 961 uuaaA-AU|A GCGUAUUGGU GCGUAA-aAU A|UGU-CUuu --uu---auu CGUAU-UGUA 1021 CCU----U-- --AG---(au ag-g)---CU ---------- AGGU------ ---------- 1081 ---------- ------uuuc uuccuuuuaa gaagu(uuaa ugccac)cca aaaaaaauuu 1141 u---uuaaaa aaaucgauac uua(agua)u ugaacucuuu uuuugau--- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------CCAA UAGGAAAAA- --AGAUA-UA |g-------- -AGCGCUU-- 1321 -CGAAUUCGA AG-GG(g--- -gg------- ---------- ---------- ------)CCA 1381 CUUGG|---- GCCUC--CUG C|GCUUA-GC UG|---AUUU (GUGA--)GA AGAAUCAGC| 1441 CACAUACAGG UA(UGUGA-- AA-)GACCUU A|Uc-----( u-cg-)---- -gA----C-A 1501 GAA|GUG-GG GAAUUUUGGG C-AAUGCGC( ---------- ----UUAA)G CGUGA-CCC| 1561 A|-GCAA-A- UU-GAU---- -GUUGCGGAA --GAAa-aua (--------- agug------ 1621 --------)a gggugc-cuU -GCA|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ----gcaaug ugggau---- ---------- ---------- -augccucuu ugacuuuuuu 1801 uaaacgcagg ccagaaacga guauaauuaa gcuaa----- ---------- ---------- 1861 ---------- ---------- ---------- --------gu uuuguuagAA GCUAU|-GGC 1921 -CAA-U--AC AUGU-G(-CC AGCAGCC-GC -GGU-AA)-U ACAUGA|--- -GUA-GCU-- 1981 AGCGU-UAAU CGU--CCUUA UUGAGC|GUA CAGAGUGAGU -C-GGCG|GU Cauaac-aau 2041 |uaauaacua uuuuu----- -------(-- ---auau)-- ----a----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------aa aaga------ --uauuaa-- ---------- 2221 ---------- ---------- ---------- ---------- ------ua|A AAAGGAC-UA 2281 G---UGAUUU -UU-UUUU-A -UGUAA--GU -----|UGAG CUUGUA-AAC ---UAGUG(A 2341 UAAAA)UAC- AGG---GAGU UUAC-AGG-A ACA------- ----UUCGAC --GC(-GAAA 2401 -)GC|G---- ----ACUAAC A-AUUAA-A- AA---AUGAC GCU--AUAUC ACGAA-AGUA 2461 U-AGG---UA AUGAAAAGG( cauuuuaaa) CCUA-GUAG| -UCUA-UAC- UGUAAA-AGA 2521 U--GAGU-AU |UU|------ ------(-aa uac------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ --------UA AGU(UAAC)A CA-aAAAUAC 2701 U-C|--C|GC U-UGGG-UAG UAAAGCC(-- -GCAA--)GU CAG--AAACU UAACAGAA-U 2761 UG|GCGGGG- ACUUGU---U CAAACGGU|G GAGCAUGU-G |GUUUAA-UG CG(AUAAUCC 2821 A--------- ----)CGUAA A-ACCUUACC AGCGU-uaaa uuuuuuucuu uaguuaagcu 2881 (-------uc au-)ggcuaa aa-uuu(-uu ag)aaa-<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->aaa-ag-a g--A---UGG UAU-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-UU CGU-|GUU(U --UGA)AAUU UAGAA(UUA- 3181 AGU)UUUAU- A-AACGAACG CAA-CCCUUG -----UUUUG UAUG------ -----(uuu- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|----AA UAC-AAAAUA aaugauu-aa (-gga-a)uu auucauuuu- 3781 -agcuagA-A GGCUGA-AGU CAAAGUCCUU A|CGGU|CUG CGU------- ---------A 3841 C-G-CU-GGG CU-ACA--CA -CGUGUUACA AU--GGUAAA A-ACAA-UAG AA--Aaaca- 3901 aagc<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u caa--)ccuu uaguu----U UU-A-AAAAA UUA-CCACAG 4021 ---------- -----UACGA --AUUGU-UU U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-uu) G-GA-A--GC -A--UGAAG- -AAGAAAUCG 4141 U-U--AGUAA U-CGCAAA(- UAAGU-AU-- --)GNUGCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--UAAG 4261 UCAAGU-CC- UGCACACA-C -UGCCCAUCA C-GCU--CAA AGA-GUUuua aau------- 4321 ---------- ---------- ---------- ---------- -(------)< cuagaagcu- 4381 gaauu-uagg augugacccu acccauuu-- uuuu-uuuua aaa-aaacuc gccggugcac 4441 caaacac-cg guguucuaaa caagcu-acu uguugucagc acaaagaaga guaaaggcga 4501 aacc------ ---------- -->------- ---------- ---------- ---------- 4561 ---------a uuugaAAUGA UCGG-AGU-G AAGUUGACAC AAGGUACC-G GUA-UG(GGA 4621 -A)CUU-GC- CGGUGGAGCA ---------| AGGUGAACAG ACCAAUGCAU GCACC~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.T.pyrif 5213 bp RNA RNA ~?~???? DEFINITION Mitochondrion Tetrahymena pyriformis str. ST (clone pAT16, subclone TmX2.3). ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Tetrahymena pyriformis str. ST (clone pAT16, subclone TmX2.3). ORGANISM Mitochondrion Tetrahymena pyriformis. REFERENCE 1 (bases 1 to 1718) AUTHORS No information JOURNAL J. Biol. Chem. 261, 5187-5193 (1986) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M12714 Phylo:Mitochondria,Protozoan,Tetrahymena DEFINITION Tetrahymena pyriformis mitochondrial small subunit rRNA gene. ORGANISM Mitochondrion Tetrahymena pyriformis Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; Hymenostomata; Hymenostomatida; Tetrahymenina; Tetrahymenidae. REFERENCE 1 (bases 1 to 2504) AUTHORS Schnare,M.N., Heinonen,T.Y., Young,P.G. and Gray,M.W. TITLE A discontinuous small subunit ribosomal RNA in Tetrahymena pyriformis mitochondria COMMENT Draft entry and sequence in computer readable form for [1] kindly provided by M.W.Gray, 30-JUL-1986. NCBI gi: 343462 FEATURES Location/Qualifiers rRNA 783..990 /note="alpha component of small subunit ribosomal RNA" rRNA 788..990 /note="alpha component of small subunit ribosomal RNA" rRNA 1045..2451 /note="beta component of small subunit ribosomal RNA (14S rRNA)" source 1..2504 /organism="Tetrahymena pyriformis" /mitochondrion BASE COUNT 612 a 212 c 300 g 545 t 3544 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- --aaaaaaaa uuagguugua aucaaaaaau uuauuGAGUG 661 (UGA-)U-CA U|GGCUC-GG GAUUAACGCU -A-AUUA-GA |CG-CC--UA ACAC-A-UGC 721 -GAGUUU-UA UAuau|-auu agau---(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)(aacaauu 841 aa)------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -aucuaa--- 961 -augU-AU|A GCGUCAAGGU GAGUAU--AA U|ACAuAA-a --ua---UGC CUUUA-AGCC 1021 UAUU------ -------(ua aa-u)----- ---------A AUAG------ ---------- 1081 ---------- ---------- uuaauuuuaa aacaa(uaac aaaugc)uau a[aaaaacaa 1141 u---uauaaa uuauaauaaa caa(uca-)u auaauucuuu aaaaccaaaa aa]auuauua 1201 gca------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU AAAGAUUAA- --UUUGU-AU |--------- -AAUAUUA-- 1321 -GGUAAUUAU UU-cuaaaau uguuuaauaa aua------a auauauuuau uuuuag-UaA 1381 AAUAA|---- GCCU---AGA U|GUUUA-GU UG|---AAUU (UAGA--)GA UUGUUCAAC| 1441 CACAUACGGG UA(UGAAA-- AC-)UACCCU A|Uc-----( uauuu)---- -gA----C-A 1501 GCA|GUG-AG GAAUUUUGGA C-AAUAUGC( ---------- ----GAAA)G CAUGA-UCC| 1561 A|-GCGA-A- CU-AAU---- -GGAAACGAA --GAAG-AUA (--------g acaa------ 1621 --------)U AUUGUA-AAG -UUU|a---- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ----gugcg- -agaau---- ---------- ---------- --uaacaaau gaguau---- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- --------au ucuaggAgAA GCUCU|-GGC 1921 -UAA-U--AC AUGU-G(-CC AGCAGCC-GC -GGU-AA)-U ACAUGA|--- -GGA-GCG-- 1981 AGCGU-UAUC CAU--AUUGA CUGAGU|GUA UUAAAUACGU -A-GGAU|GU UAUAAU-UAC 2041 |uac-uuuaa aaaug----u aauaaaaa-- --cuaaauac u--------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------guag uu-------- ---------- 2221 ---------- ---------- ---------- ---------- -----auu|u uauaAAC-AA 2281 u-----AAUU -AU-AAUU-A -AGAGU--AG -----|GAGA CUUAUA-GAA ---CAACG(A 2341 UUAAA)UGU- AGU---UACA CUAU-AUA-G CUA------- ----GCCAUA -AAC(-UAAG 2401 -)GU|G---- ----CUUCUC U-AAUUA-U- AA---UUUUA UCU--GAUGU AUGAA-AGUA 2461 C-GGG---UA UCGAUGAGG( AcUAGucuC) CCUA-GUAG| -UCCG-UAC- UGUAAA-AGA 2521 U--GAAU-AC |UU|Uaugaa uu----(-ac g--------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----a auucAGGAAU AGC(UAAC)G C--aAAGUAU 2701 U-C|--U|GC U-UGGG-GAG UAUUAUC(-- -GCAA--)GA UUA--AAACU UAACUGAA-U 2761 UG|GCGGGA- AUUUGU---U CGAACGGU|G GAACAUGU-G |GUUUAA-UG CG(AUAAUCC 2821 A--------- ----)CGCAA A-AUCUUACC AACGUUUuag -gcuuua--- ---------- 2881 ---------- ---------- ---------- --------ua-aa-g u--A---CGG AAU-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-UU CGU-|GCU(G --UGA)AGUU UAGGA(UUA- 3181 AGU)UCUUUu u-AACGAAUG CAA-CCCUAU ---------- ---------- -----(---- 3241 --)--- ---|------ ---------- ---guau-ac (-cug-a)au aua-gggguu 3781 ------UU-A GGCUGA-AGU C-AAGUCCCU A|UGGU|CUU UAU------- ---------A 3841 C-G-UU-GGG CU-ACA--CA -CGUGUUACA AG--GGUAAA A-ACAA-AGA GA--CGCAA- 3901 UAGA<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UAA--)UCUG -GAGCAAAAC UC-U-AAAAA UUA-CCUCAG 4021 ---------- -----UUCAG --AUUGU-CU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-uc) U-GA-G--GC -A--UGAAG- -AUGAAAUCG 4141 U-U--AGUAA U-UGUAAA(- UUAAA-AU-- --)GUUACAG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--UUAG 4261 UCAAAU-UU- UGCACACA-C -CGCCCAUCA C-GCU--CGG AAA-GUCaau auu-ag---- 4321 ---------- ---------- ---------- ---------- -(------)< cggaagauu- 4381 ugaaa-aucu cuacggaaua auaaauuu-- aaua-uuaau uua-uuaguc auuauguuuu 4441 uuuuuaacgc uguggaugga aaguaguauc uaau------ ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------cua auauuGGUAA UCUG-AGU-G AAGUUGACAC AAGGUACU-G GUA-GG(GGA 4621 -A)CCU-GU- UGGUGGAAUA ---------| uauuauuau~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.N.ovali 5213 bp RNA RNA 15-DEC-1998 DEFINITION Nyctotherus ovalis.; small subunit ribosomal RNA; small subunit rRNA. ACCESSION Y16670 KEYWORDS small subunit ribosomal RNA; small subunit rRNA. SOURCE Nyctotherus ovalis. ORGANISM Nyctotherus ovalis. REFERENCE 1 (bases 1 to 1701) AUTHORS Vogels,G., Veenhuis,M. and Hackstein,J. Akhmanova,A., Vonken,F., van Alen,T., Van Hoek,A., Boxma,B., TITLE A hydrogenosome with a genome JOURNAL Nature 396, 527-528 (1998) STANDARD No information REFERENCE 2 (bases 1 to 1701) AUTHORS Akhmanova,A.S. TITLE Direct Submission JOURNAL Submitted (26-FEB-1998) A.S. Akhmanova, Department of Cell Biology and Genetics, Erasmus University Rotterdam, PO Box 1738, 3000 DR Rotterdam, NETHERLANDS STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y16670 BASE COUNT 464 a 323 c 459 g 455 t 3512 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ucguuuuagu uggagaacgu aauucacuag cuauuGAGUA 661 (UGA-)C-UA U|AGCUC-UG AGUGAAUGCG -U-GCUG-GC |GA-UC--UA AUAC-A-UGC 721 -CAGUCG-AC agccu|uaca -------(uu auaguaaguc uguggcguag u--------- 781 ---------- ---------- ---------- ---------- ---------- -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -----ugu-- 961 -gagc-aa-g ag-cggagGU Guuaagccua g-ggu-uuga --cau--aaa gagga-ccua 1021 uacu---u-- --uu---(cc ga-a)---aa ---------- -uau-uguuc uggaauaaaa 1081 ugucaaauac uguucgagcg acuauucgau uauguggggc cuuuaugguc gauuagauag 1141 ucucucgugg caaaaagaaa guu------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- -------ugc ccgggucgc- --aucuc-cg -ug------- -cgguc---- 1321 -ugguu-aug au-ac(guag aua------- ---------- ---------- ------)gua 1381 uua-g----- cca----aua a|CCGUA-GG UG|---AACU (GAGA--)GG UUCUACACC| 1441 CACAUC-GUU AA(UGAGA-- AA-)--AACG A|Ucggggc( a-uau)uccc cgA----C-U 1501 GCA|GUA-gu gaaucUUGAC C-AAUGGGC( ---------- ----UGUU)G CCUAA-GUU| 1561 U|-GUC--G- UC-GGC---- -ggguga--- -----a-gcu (--------- auc------- 1621 --------)a gcu------u -cau|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ----aggucu auugagaaa- ---------- ---------- ---------- ---------- 1801 ---------- ---------- -uauaau-ga gcuaa----- ---------- ---------- 1861 ---------- ---------- ---------- -------ucu cgacagagAA UGAGU|-GAC 1921 -UAA-C---A ACGU-G(-CC AGCAGUU-GC -GGC-AA)-G ACGUUG|--- aACU-CGA-- 1981 AGCGU-UACU GGU--CCUGA UUGGGC|GUA AAGUAUAGCU -A-GGCG|GC Uaacgu-agu 2041 |uaugguuua uaaac----- -------(-- --gggcg)-- ----g----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------uu agaacgugca cuccauaa-- ---------- 2221 ---------- ---------- ---------- ---------- -----aac|c guuaUGC-u- 2281 ----ugGGAU -AU-AUCG-U -AGGUC--UU uc---|GGUA CGCGCA-CCU ---UAGCG(A 2341 UAAAA)UGC- GGA---AAGG GUGC-UAU-G GAC------- ---aUUCCAG --UG(-GCCA 2401 -)CG|G---- ---cGGGGCU C-AGAUA-U- AU---CCGAC GCU--GAACU AUUAA-AGUG 2461 U-GGG---GG CCAAAAAGG( AUUAGGGAC) CCUU-GUAG| -CCCA-CAC- CCUGAAuucA 2521 U--GAAC-AU |UG|aucggu auu---(-ua au-------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)----gg uacugau-UC AGC(UUAC)G CG-uAAAUGU 2701 U-U|--C|GC C-UGGG-GAA UAAUACC(-- -GCAA--)GG UAG--AAAGC UAAUGAGA-U 2761 UG|GCGGGA- GCUUGU---A UAAACAAU|G GGGCACGU-G |GCUCAA-UU CG(ACAAUAC 2821 A--------- ----)CGUAA A-AUCUUACC CGUAA-gaug ugaggugcg- ---uuacgua 2881 (aucuguagu uuc)uacgua g--------- -------<-- ---------- ---------- 2941 ---------- ------acgc gacaacgccu aaguugcguc ugguuaugua aucgcgacua 3001 uagacagaac acgauaaaua ugugcuggcu gcgua----- ---------- ---------- 3061 ---------- ---------- ---------a a>cga-cc-u c--u---GGG UGC-UG|CA- 3121 |UG|-GC--U |G------UC GU-AA|A-UU CAU-|GCC(G --UGG)GGUG UGGUU(UUU- 3181 GGU)AAC-U- G-AAUGAAUG CGA-CCUAUG ---------- ---------- -----(---- 3241 --)--- ---|------ --------gu aagucua-ua (-ucg-u)ug cggaggucc- 3781 -caagguc-u aggaCA-CGU C-AAGUCAAC A|UGGU|CUU AAU------- ---------A 3841 U-G-CG-GGG CU-GCA--CA -UGUGCCACA AG--GGCAAA G-ACAA-AAU Ga--ugcua- 3901 aggu<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- gcg--)agcc aaagc--aau cuucuAAAAA UUG-UCACAG 4021 ---------- -----UUCAG --AUUGU-AC G-U(------ ---------- ---------- 4081 ---------- ---------- UGCAAa-uc) A-UG-U--AC -A--UUAAG- -UAGUAAUUG 4141 U-U--AGUAA U-CGUACC(- UGGGU-A--- --)A-AGUGC C-acgguga- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUG--UUAU 4261 UCGAGC-UU- UGCACACA-C -cGCCCAUCA C-GCU--agg gga-gagacc ggug------ 4321 ---------- ---------- ---------- ---------- -(------)< cuggaa---- 4381 gaauu--auc uuacaguuug cggacugg-- gggu-uuuua aaa------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ------ggaa acgguuucaa ccag-agc-u AAGUUGACAC AAGGUAGC-G GUA-GU(AGA 4621 -A)ACU-GC- UGCUGGAGUA ---------| gcuaucaaag ugggauaaug uacc------ 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (3)-CHLORA 5213 bp RNA RNA 25-JAN-1994 DEFINITION CHLORARACHNIOPHYCEAE. ACCESSION No information KEYWORDS No information. SOURCE CHLORARACHNIOPHYCEAE. ORGANISM CHLORARACHNIOPHYCEAE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.Chlo.sp 5213 bp RNA RNA 11-JAN-191 DEFINITION Chlorarachnion sp. ACCESSION No information KEYWORDS No information. SOURCE Chlorarachnion sp. ORGANISM Chlorarachnion sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U36908 LOCUS U36908 1911 bp DNA PLN 26-OCT-1995 DEFINITION Chlorarachnion sp. CCMP 621 small subunit ribosomal protein 14 (rps14) gene, partial cds, small subunit ribosomal protein 12 (rps12) gene, complete cds, and small subunit ribosomal RNA gene. ACCESSION U36908 KEYWORDS . SOURCE Chlorarachnion sp. strain=CCMP 621. ORGANISM Mitochondrion Chlorarachnion sp. Eukaryotae; mitochondrial eukaryotes; Chlorarachniophyceae; Chlorarachnion; Chlorarachnion sp. REFERENCE 1 (bases 1 to 1911) AUTHORS Gilson,R., McFadden,G.I. and Waller,R.F. TITLE Preliminary Characterisation of Chlorarachniophyte Mitochondrial DNA JOURNAL J. Eukaryot. Microbiol. 42 (1995) In press REFERENCE 2 (bases 1 to 1911) AUTHORS Gilson,R., McFadden,G.I. and Waller,R.F. TITLE Direct Submission JOURNAL Submitted (21-SEP-1995) Paul Gilson, Botany, University of Melbourne, Melbourne, Vic 3052, Australia COMMENT NCBI gi: 1040983 FEATURES Location/Qualifiers source 1..1911 /organism="Chlorarachnion sp." /strain="CCMP 621" /mitochondrion /note="derived from two contiguous HindIII restriction fragments of mitochondrial DNA. The entry contains the complete sequence of one HindIII fragment and a partial sequence of the next contiguous HindIII fragment" CDS <1..163 /gene="rps14" /note="NCBI gi: 1040984" /codon_start=2 /product="small subunit ribosomal protein 14" /translation="SLRLALICPGLLPIRNICVATSRSRGVFRKYKLSRIMLRDMGLQ GLLPGFKKR" CDS 168..548 /gene="rps12" /note="NCBI gi: 1040985" /codon_start=1 /product="small subunit ribosomal protein 12" /translation="MATSNQMGANTRSKKKKKNLKKALLGCPQKRGVCMRLLTRSPKK PNSAQRRVAKVRLSTKRVIFAHIPGEGHNLSPFSVVLVRGGNVRDLPGVRYKTIRGVK DLAPVLSRTNGRSKYGTKRPKVHT" rRNA <572..>1911 /note="the exact ends of the rRNA are uncertain" /product="small subunit ribosomal RNA" BASE COUNT 556 a 395 c 524 g 435 t 1 others ORIGIN BASE COUNT 372 a 283 c 389 g 295 t 3874 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------U AUACCGGGUU 661 (UGA-)U-CC U|GGCUC-AG AGUGAACGCU -A-GGGG-UA |CG-CA--UA ACAC-A-UGC 721 -GAGUCA--a cg---|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uau -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- --------|- 961 ----c-gu|G GCGAACGGGU GAKUAC--AG C|AGG-caau --ua---CGC CCGGU-AGcc 1021 cagaa----- -------(ua aa--)----- -------uuc uggauaa--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- aaa------- -ga(uuaa)u c|-------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GUUG CCGGAUAUG- --ucUGU-GU |--------- -AGGAUUA-- 1321 -GAUAAUC-- -----(GUAG A--------- ---------- ---------- ------)--- 1381 ---GA|---- GUCGA--UGA U|CCUUA-GU UG|a--AUCU (GGGAA-)GG AUGCACAGC| 1441 CACAUU-GGA AC(UGAGA-C AA-)GGUCCA A|gcucc--( agua-)--gg agg----C-A 1501 GCA|GUG-AG GAAUAUUGGG C-AAUGGGC( ---------- ----GAAA)G CCUGA-CCC| 1561 A|-ACGA-U- AC-CCC---- -GUGAUUGAA --GAAG-AC- (--------- caag------ 1621 --------)- GUCGUAAAGG -UAC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ------gcgg ucaguaaaga uua------- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- cgacgguaac uggccaaaaA GCCCC|-GGC 1921 -UAA-C---U CCGU-G(-CC AGCAGCC-GC -GGU-AA)-U ACGGGG|--- -GGG-GCA-- 1981 AGUGU-UAUU CGC--AAUGA CUGGGC|GUA AAGCGUGCGU -A-GGCG|gc uugcaauuag 2041 |cccuu--uu gcgaa----a gcuaggg(-- --cucaa)cc uuagu----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------gu gacuuuuggc ---------- ---------- 2221 ---------- ---------- ---------- ---------- -------A|C AGCAAGC-UA 2281 G-----AGUU -UG-GUAG-G -GGUUG--GU -----|AGAA UUCUCA-GAA ---GAGGG(G 2341 UACAA)UCC- AGG---GACA CUGA-GAC-G AAU------- ----ACCUAG -GGC(-GAAG 2401 -)GC|A---- ----GCCAAC U-GGACC-AU -A---CUGAC GCU--AAAGC ACGGA-AGCG 2461 U-AGG---UA GCAAAUAGG( AUUAGAUAC) CCUA-GUAG| -UCUA-CGC- CGUCAA-CGA 2521 U--GGGU-AU |UG|GCAAu- ------(--u aa-------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ --auugc-UA AGC(UAAC)G CGUUAAAUAC 2701 C-C|--C|GC C-UGGG-GAG UACGGUC(-- -GCAA--)GA UUA--AAACU UAAAGGAA-U 2761 UG|ACGGGA- GCUUGC---G CAAGCGGU|G GGGCAUGC-G |GUUUAA-UC CG(AUAUUAC 2821 A--------- ----)CGUAA A-AUCUUACC AACCCUUgaa caa------- ---------- 2881 (--------- ---)------ ------(--- --)----<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->-------- A--C---AGG UGU-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-CC CGU-|GUC(G --UAA)GAUG UUUGG(UUA- 3181 ACU)CCU-U- U-AACGGGCG UAA-CCCCU- -----cuc-- ---------- -----(uucg 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---------- -----gagca -CCGCUG-UU (GAAA-U)AA CAG-GGGGAG 3781 -----GUA-G GGAUCA-CGC C-AAGUCGUC A|UGGC|CCU GAU------- ---------G 3841 G-G-UU-GGG CU-ACA--CA -UGUGUCACA UA--GUUGCA U-ACAG-CGA GA--GGCAA- 3901 agac<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--A AAA--)GUCG -GAGCA-AUC U-AU-AACGU GCA-ACCCAG 4021 ---------- -----UUCGG --AUUAU-CU C-C(------ ---------- ---------- 4081 ---------- ---------- UGCAAC-UC) G-GA-G--AU -A--UGAAG- -GCGUAAUCG 4141 C-U--AGUAA U-CGCGUA(- UCAUA-AU-- --)GGCGCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAC--GUGA 4261 UCAAGC-UU- UGUACACA-C -CGGCCGUCA C-GAC--cgg aaa-gucagc uuu-gcuuga 4321 augguu-cgc agugau-cgc uu-------- ---------- -gcuucgug- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ------aagc guaacugucu 4561 cuugauagua gggucgaUGA UCGG-GGC-G AAGUCGUAAC AGGGUAGC-U GUA-GG(GGA 4621 -A)CCU-GU- AGCUGGAGAA AA-------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (3)-F/M_GR 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (4)-FUNGI 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (5)-ASCOMY 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (6)-ARCHIA 5213 bp RNA RNA 25-JAN-1994 DEFINITION ARCHIASCOMYCETES. ACCESSION No information KEYWORDS No information. SOURCE ARCHIASCOMYCETES. ORGANISM ARCHIASCOMYCETES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.S.pombe 5213 bp RNA RNA ~?~???? DEFINITION Mitochondrion Schizosaccharomyces pombe. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Schizosaccharomyces pombe. ORGANISM Mitochondrion Schizosaccharomyces pombe. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X54421 Schizosaccharomyces pombe mt SSU rRNA (spo m ssu) Unpublished (from K. Wolf through B.F. Lang) BASE COUNT 485 a 203 c 280 g 454 t 3791 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------au aaaaauauau auaauGAGUU 661 (UGA-)U-GU U|AGCUC-GG UUAUAACGCU -A-UCUA-GA |GA-UU-UUA ACAC-A-UGC 721 -AAAUCG-AA CGaau|caa- caaaaac--- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- --aauacauc 841 cu(uuag)-- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ------ggga uguuuguguu uuuuugu-|g 961 a---C-GU|G GUGAACAGGU GAGUAA-a-A G|GGA-AGAA --CG---GAC CUUAA-AUUU 1021 CGGc------ -------(ua aa-u)----- ---------u CCGAAUA--- ---------- 1081 ---------- ---------- ---aacacac ucuuuuggag uguugugaaa gaagug(aaa 1141 a----)cuuu ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GAUU UAAGACUGG- --CUUCU-UA |--------- -CGAUUAA-- 1321 -AGUAGUUGG AG-AG(GUAA AAG------- ---------- ---------- ------)CUU 1381 AACAA|---- GCUCA----A A|UCGUA-AU CA|ugACACU (AAGU--)GG UGCUCUGAU| 1441 CACAUU-GGC UC(UGAGA-- CAA)CAGCCA A|GAUgaac( auuua)guuc AUC----C-A 1501 GCA|GUG-GA GAAUAUUAGU C-AAUGAUC( ---------- ----GAAA)G AUUGA-ACU| 1561 A|-GUCA-U- CU-AGA---- -AGAGUGAAA --CUuu-ua- (--------- guua------ 1621 --------)- uagcuccuua aauu|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -----aagaa aauu------ ---------- --ugauucuu ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------a auuuuauguA AUUCU|-UGC 1921 -CAA-U--UU CCGU-G(-CC AGCAGCA-GC -GGU-UA)-U ACGGAU|--- -AGA-AUA-- 1981 AGCGU-UUAA CAU--AAUAA AAAGGC|CUA AAAAGUAUGU -A-GAUG|GA AAAAaa---- 2041 |--------- ---------- -------(-- ---caaa)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|u cUUUUUC-UA 2281 G-----AGUA -AU-AAag-a -UGUUU--GU -----|AGUA UUGUCA-AAU ---AAGGG(A 2341 UCAAA)UCC- GAC---AAUC UUGA-UGA-G ACU------- ----GCU-UA -AGU(-AAAA 2401 -)AC|U---- ----ACUUAC A--aUUaAU- UA---CUGAC AUU--GAGAU ACGAA-GGCU 2461 U-AGA---UC GCGAAAGAG( AUUAGAUAC) CUCU-GUAG| -UCUA-AGC- UGUAAA-CGA 2521 U--UAUU-GC |UC|UCCCAA UCU---(-uu u--------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)----UG AUUGGGU-UU AGU(GAAG)A CGguAAGCAA 2701 U-A|--U|GC C-UGGG-GAG UACUUUC(-- -GCAA--)GA UUG--AAACC CAAAACAU-U 2761 AG|ACGGUC- UUGGAA---A UCCGCAGU|G AAUCAUGU-U |AUUUAA-UU AG(AUAAUCC 2821 G--------- ----)CUAAA A-AUCUUACC UUUCCUUAAA -acaauua-- ---------- 2881 (-------gu uu-)------ ---------- -------<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->uaa-uu-g u--U---GGG UAU-UG|CA- 3121 |UG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UAA)GAUg a--GG(UUA- 3181 AUU)CC-caU U-AAUUAACG AAA-GCCUUC -----AAAGA A--------- -----(---- 3241 --)--- ---|------ -UU-CUUUG- --UGUUA-GU (GAUA-A)GC UAA-CUUUU- 3781 -----UAG-A GGGUUA-AGA C-AAGUCAAU A|UGAU|CCU UAU------- ---------G 3841 G-A-AA-GGG CU-AUA--GA -CGUGAUAUA AA-AUCUAAU C--CAA-UAA U---Uuuuaa 3901 uauc<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g aaa--)gauu -gaaguauua UUAU-AAUGG UUAGGAgauu 4021 ua-------- -----UUCAG --AUUUA-AA U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAu-uu) G-AU-U--UA -A--UGAAG- -GAGGAAUUG 4141 C-G--AGUAA U-CACUAA(- UCAUU-AC-- --)GUAGUGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--U-AU 4261 CUCUGA-GA- UGUACUAA-C -UACUCGUCA A-GCG--CUG AAA-GUAu-- ---------- 4321 ---------- ---------- ---------- ---------- ---------< ---------- 4381 ---------- ---uaaucuc uugaagaaga ca(uucauu) ------- ---------- ---------- ---------- 4561 ---------- ----gUGCAA UUAG-UGU-U AAGUCGAAAU AAGGUAAC-C GUA-GU(GGA 4621 -A)GUU-GC- GGUUGAACUA ---------| AUUAAUUCAG GUUAACCCCC CCCC~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (6)-EUASCO 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (7)-PLECTO 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.E.nid.1 5213 bp RNA RNA 29-JAN-1982 DEFINITION Mitochondrion (Emericella) Aspergillus nidulans. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion (Emericella) Aspergillus nidulans. ORGANISM Mitochondrion (Emericella) Aspergillus nidulans. REFERENCE 1 (bases 1 to 1701) AUTHORS No information JOURNAL 751(1981) STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5213) Corresponding GenBank entry: J01393 Phylo:Mitochondria,Fungi,Aspergillus DEFINITION a.nidulans mt small ribosomal subunit rna gene. SOURCE aspergillus nidulans mitochondria. ORGANISM Mitochondrion Emericella nidulans Eukaryota; Fungi; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae. REFERENCE 1 (bases 1 to 1437) AUTHORS Kuntzel,H. and Kochel,H.G. TITLE evolution of rrna and origin of mitochondria JOURNAL Nature 293, 751-755 (1981) COMMENT this sequence is compared to the s-rrna gene sequences of yeast (s.cerev.), man, mouse, e.coli and maize. cf ystrg18sa, hummt, musmt, ecorgrrnb and mzecp16srr. NCBI gi: 336909 FEATURES Location/Qualifiers source 1..1437 /organism="Emericella nidulans" /mitochondrion ORIGIN putative 5' end of primary transcript BASE COUNT 500 a 209 c 299 g 429 t 3776 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------aaa auuuuGAGUU 661 (UGA-)U-GA U|GGCUC-UG AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---auua--- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa-a)----- --------UC CCUUAUA--- ---------- 1081 ---------- ---------- ---------- ---------- -----AAAAG AAAGGAaaaa 1141 gaagg-UCC- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUUA-UU |a------uC ACGG--UG-- 1321 -AGUAGUAGU AA-AG(GUAA uga------- ---------- ---------- ------)CUU 1381 UACUA|---- GCUAA----A U|CCGUA-GU CG|--uGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( uu-u-)--a- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GC-GA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGAAA --GUGU-AUU (--------a uaau------ 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )auaucguau aaaauucuaa 1801 auagaauaau gauaaugaca auuuucuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAaC---U ACCU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAAU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGU ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UAUUUAC-UA 2281 G-----AGUU -UU-AUgu-a -AGAAG--GA -----|AGAA GCUCUG-GAG ---UAGUG(A 2341 UAUAA)UAC- GUA---UAUA CCAG-AGA-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAGAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGACAA-UGA 2521 U--GAAU-GU |CA|UAGACU AGAaaa(agu cguuuagacu au-------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)aaa-UU UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAG---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUGAUCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUUUGAA Uau------- ---------- 2881 (--------u u--)------ ---------- -------<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->-------u a--C---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UU UU-UA|G-UU AAU-|GUC(G --UGA)GAUC U--GG(UUA- 3181 AGU)CCU-U- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(cauu 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----u auaaaguuGA -UCGCCU-U- (UAUA-U)-- UGGuu-AGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUU AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--UGCCUU U-ACAA-AGG GA--UGCGA- 3901 UUUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UG---)AAAu uGAGCUAAUC CCCC-AAAAA AGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--A-AA 4261 AUCAGC-UG- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GAAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< gaaguuugau 4381 uuacu-uaua uuuauaauau auauaa(uca g)uuauauau auuuauaagu uaaauuuucg 4441 ca-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AUGGUUCG-U GUA-AU(GGA 4621 -A)AUU-GC- ACGGGAUGAA -----UUA-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.alber 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Petromyces albertensis NRRL 20602. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Petromyces albertensis NRRL 20602. ORGANISM Mitochondrion Petromyces albertensis NRRL 20602. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29229 LOCUS PAU29229 1372 bp DNA PLN 02-JAN-1996 DEFINITION Petromyces albertensis NRRL 20602 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29229 NID g1144033 KEYWORDS . SOURCE Petromyces albertensis. ORGANISM Mitochondrion Petromyces albertensis Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; Petromyces. REFERENCE 1 (bases 1 to 1372) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1372) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144033 FEATURES Location/Qualifiers source 1..1372 /strain="NRRL 20602" /organism="Petromyces albertensis" /mitochondrion rRNA <1..>1372 /product="small subunit ribosomal RNA" BASE COUNT 476 a 209 c 283 g 404 t ORIGIN BASE COUNT 476 a 209 c 283 g 404 t 3841 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUUu----- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaua-- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc cCGG--GU-- 1321 -AGUAGUAGG AA-AA(GUAA UGA------- ---------- ---------- ------)UUU 1381 UUCUA|---- GCUAAaa--- -|CCGUA-GU CG|--AGACU (GAGA--)-G UCAAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a uuau------ 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 uaaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(uaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaaugaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(uaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----u auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.all.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Petromyces alliaceus NRRL 315. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Petromyces alliaceus NRRL 315. ORGANISM Mitochondrion Petromyces alliaceus NRRL 315. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29231 LOCUS PAU29231 1372 bp DNA PLN 02-JAN-1996 DEFINITION Petromyces alliaceus NRRL 315 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29231 NID g1144035 KEYWORDS . SOURCE Petromyces alliaceus. ORGANISM Mitochondrion Petromyces alliaceus Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; Petromyces. REFERENCE 1 (bases 1 to 1372) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1372) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144035 FEATURES Location/Qualifiers source 1..1372 /strain="NRRL 315" /organism="Petromyces alliaceus" /mitochondrion rRNA <1..>1372 /product="small subunit ribosomal RNA" BASE COUNT 476 a 209 c 283 g 404 t ORIGIN BASE COUNT 476 a 209 c 283 g 404 t 3841 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUUu----- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaua-- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc cCGG--GU-- 1321 -AGUAGUAGG AA-AA(GUAA UGA------- ---------- ---------- ------)UUU 1381 UUCUA|---- GCUAAaa--- -|CCGUA-GU CG|--AGACU (GAGA--)-G UCAAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a uuau------ 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 uaaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(uaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaaugaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(uaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----u auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.all.2 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Petromyces alliaceus NRRL 5108. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Petromyces alliaceus NRRL 5108. ORGANISM Mitochondrion Petromyces alliaceus NRRL 5108. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29230 LOCUS PAU29230 1372 bp DNA PLN 02-JAN-1996 DEFINITION Petromyces alliaceus NRRL 5108 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29230 NID g1144034 KEYWORDS . SOURCE Petromyces alliaceus. ORGANISM Mitochondrion Petromyces alliaceus Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; Petromyces. REFERENCE 1 (bases 1 to 1372) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1372) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144034 FEATURES Location/Qualifiers source 1..1372 /strain="NRRL 5108" /organism="Petromyces alliaceus" /mitochondrion rRNA <1..>1372 /product="small subunit ribosomal RNA" BASE COUNT 476 a 208 c 283 g 405 t ORIGIN BASE COUNT 476 a 208 c 283 g 405 t 3841 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUUu----- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaua-- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GU-- 1321 -AGUAGUAGG AA-AA(GUAA UGA------- ---------- ---------- ------)UUU 1381 UUCUA|---- GCUAAaa--- -|CCGUA-GU CG|--AGACU (GAGA--)-G UCAAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a uuau------ 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 uaaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(uaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaaugaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(uaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----u auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.clava 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus clavatoflavus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus clavatoflavus. ORGANISM Mitochondrion Aspergillus clavatoflavus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29232 LOCUS ACU29232 1375 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus clavatoflavus NRRL 5113 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29232 NID g1144036 KEYWORDS . SOURCE Aspergillus clavatoflavus. ORGANISM Mitochondrion Aspergillus clavatoflavus Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1375) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1375) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144036 FEATURES Location/Qualifiers source 1..1375 /strain="NRRL 5113" /organism="Aspergillus clavatoflavus" /mitochondrion rRNA <1..>1375 /product="small subunit ribosomal RNA" BASE COUNT 471 a 212 c 286 g 406 t ORIGIN BASE COUNT 471 a 212 c 286 g 406 t 3838 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AUUU AGUUuuu--- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuacug- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -----AGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----aaa-- aaaggaaauu 1141 aaaaagucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AUUCU-UU |a------uc uCGG--UG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAuag-- -|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGGAA --AUGU-AUU (--------a uaauauu--- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aauucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUaa-g -AGAAG--GU -----|AGAA UUUCUG-GAG ---UAGAG(a 2341 uagaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GAUAAC -GGC(-GAAG 2401 -)GC|A---- ----ACCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UGGGCU AGAaau(aua --u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGCCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa u--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUU-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(uaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau aGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAu-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UCU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuuuc-cuau guguuaauau auacaa(uca g)guauuuaa auacguaggu uuuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AC~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.fla.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus flavus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus flavus. ORGANISM Mitochondrion Aspergillus flavus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29214 LOCUS AFU29214 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus flavus NRRL 1957 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29214 NID g1144018 KEYWORDS . SOURCE Aspergillus flavus. ORGANISM Mitochondrion Aspergillus flavus Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144018 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 1957" /organism="Aspergillus flavus" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 475 a 210 c 288 g 401 t ORIGIN BASE COUNT 475 a 210 c 288 g 401 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaaua- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.fla.2 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus flavus var. columnaris. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus flavus var. columnaris. ORGANISM Mitochondrion Aspergillus flavus var. columnaris. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29220 LOCUS AFU29220 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus flavus var. columnaris NRRL 4822 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29220 NID g1144024 KEYWORDS . SOURCE Aspergillus flavus var. columnaris. ORGANISM Mitochondrion Aspergillus flavus var. columnaris Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144024 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 4822" /organism="Aspergillus flavus var. columnaris" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 475 a 210 c 288 g 401 t ORIGIN BASE COUNT 475 a 210 c 288 g 401 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaaua- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.fla.3 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus flavus var. columnaris. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus flavus var. columnaris. ORGANISM Mitochondrion Aspergillus flavus var. columnaris. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29221 LOCUS AFU29221 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus flavus var. columnaris NRRL 4823 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29221 NID g1144025 KEYWORDS . SOURCE Aspergillus flavus var. columnaris. ORGANISM Mitochondrion Aspergillus flavus var. columnaris Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144025 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 4823" /organism="Aspergillus flavus var. columnaris" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 475 a 210 c 288 g 401 t ORIGIN BASE COUNT 475 a 210 c 288 g 401 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaaua- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.kamba 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus kambarensis. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus kambarensis. ORGANISM Mitochondrion Aspergillus kambarensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29219 LOCUS AKU29219 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus kambarensis NRRL 3751 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29219 NID g1144023 KEYWORDS . SOURCE Aspergillus kambarensis. ORGANISM Mitochondrion Aspergillus kambarensis Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144023 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 3751" /organism="Aspergillus kambarensis" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 475 a 210 c 288 g 401 t ORIGIN BASE COUNT 475 a 210 c 288 g 401 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaaua- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.lepor 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus leporis. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus leporis. ORGANISM Mitochondrion Aspergillus leporis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29228 LOCUS ALU29228 1375 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus leporis NRRL 6599 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29228 NID g1144032 KEYWORDS . SOURCE Aspergillus leporis. ORGANISM Mitochondrion Aspergillus leporis Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1375) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1375) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144032 FEATURES Location/Qualifiers source 1..1375 /strain="NRRL 6599" /organism="Aspergillus leporis" /mitochondrion rRNA <1..>1375 /product="small subunit ribosomal RNA" BASE COUNT 475 a 209 c 286 g 405 t ORIGIN BASE COUNT 475 a 209 c 286 g 405 t 3838 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUUu----- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaua-- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUau---- ---------- 1081 ---------- ---------- ---------- ---------- -----aaaag aaaggaaaau 1141 aaaaagucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--UG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a uaau------ 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuua(uau a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC UCAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(uaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.nom.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus nomius. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus nomius. ORGANISM Mitochondrion Aspergillus nomius. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29218 LOCUS ANU29218 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus nomius NRRL 3161 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29218 NID g1144022 KEYWORDS . SOURCE Aspergillus nomius. ORGANISM Mitochondrion Aspergillus nomius Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144022 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 3161" /organism="Aspergillus nomius" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 475 a 212 c 287 g 400 t ORIGIN BASE COUNT 475 a 212 c 287 g 400 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaacu- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----aca-- aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuccg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.nom.2 5213 bp RNA RNA 11-JAN-191 DEFINITION Aspergillus nomius. ACCESSION No information KEYWORDS No information. SOURCE Aspergillus nomius. ORGANISM Aspergillus nomius. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29225 LOCUS ANU29225 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus nomius NRRL 6108 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29225 NID g1144029 KEYWORDS . SOURCE Aspergillus nomius. ORGANISM Mitochondrion Aspergillus nomius Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144029 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 6108" /organism="Aspergillus nomius" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 475 a 212 c 287 g 400 t ORIGIN BASE COUNT 475 a 212 c 287 g 400 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaacu- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----aca-- aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuccg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.nom.3 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus nomius. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus nomius. ORGANISM Mitochondrion Aspergillus nomius. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29226 LOCUS ANU29226 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus nomius NRRL 6552 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29226 NID g1144030 KEYWORDS . SOURCE Aspergillus nomius. ORGANISM Mitochondrion Aspergillus nomius Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144030 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 6552" /organism="Aspergillus nomius" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 475 a 212 c 287 g 400 t ORIGIN BASE COUNT 475 a 212 c 287 g 400 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaacu- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----aca-- aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuccg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.nom.4 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus nomius subsp. NRRL 3353. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus nomius subsp. NRRL 3353. ORGANISM Mitochondrion Aspergillus nomius. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29227 LOCUS ANU29227 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus nomius NRRL 3353 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29227 NID g1144031 KEYWORDS . SOURCE Aspergillus nomius. ORGANISM Mitochondrion Aspergillus nomius Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144031 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 3353" /organism="Aspergillus nomius" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 475 a 212 c 287 g 400 t ORIGIN BASE COUNT 475 a 212 c 287 g 400 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaacu- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----aca-- aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuccg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.oryza 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus oryzae var. effusus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus oryzae var. effusus. ORGANISM Mitochondrion Aspergillus oryzae var. effusus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29215 LOCUS AOU29215 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus oryzae var. effusus NRRL 1958 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29215 NID g1144019 KEYWORDS . SOURCE Aspergillus oryzae var. effusus. ORGANISM Mitochondrion Aspergillus oryzae var. effusus Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144019 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 1958" /organism="Aspergillus oryzae var. effusus" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 475 a 210 c 288 g 401 t ORIGIN BASE COUNT 475 a 210 c 288 g 401 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaaua- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.par.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus parasiticus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus parasiticus. ORGANISM Mitochondrion Aspergillus parasiticus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29213 LOCUS APU29213 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus parasiticus NRRL 502 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29213 NID g1144017 KEYWORDS . SOURCE Aspergillus parasiticus. ORGANISM Mitochondrion Aspergillus parasiticus Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144017 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 502" /organism="Aspergillus parasiticus" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 475 a 210 c 288 g 401 t ORIGIN BASE COUNT 475 a 210 c 288 g 401 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaaua- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.par.2 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus parasiticus subsp. NRRL 4123. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus parasiticus subsp. NRRL 4123. ORGANISM Mitochondrion Aspergillus parasiticus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29233 LOCUS APU29233 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus parasiticus NRRL 4123 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29233 NID g1144037 KEYWORDS . SOURCE Aspergillus parasiticus. ORGANISM Mitochondrion Aspergillus parasiticus Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144037 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 4123" /organism="Aspergillus parasiticus" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 475 a 210 c 288 g 401 t ORIGIN BASE COUNT 475 a 210 c 288 g 401 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaaua- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.par.3 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Asptergillus parasiticus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Asptergillus parasiticus. ORGANISM Mitochondrion Asptergillus parasiticus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29223 LOCUS APU29223 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus parasiticus NRRL 6433 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29223 NID g1144027 KEYWORDS . SOURCE Aspergillus parasiticus. ORGANISM Mitochondrion Aspergillus parasiticus Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144027 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 6433" /organism="Aspergillus parasiticus" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 475 a 210 c 288 g 401 t ORIGIN BASE COUNT 475 a 210 c 288 g 401 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaaua- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.sojae 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus sojae. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus sojae. ORGANISM Mitochondrion Aspergillus sojae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29216 LOCUS ASU29216 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus sojae NRRL 1988 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29216 NID g1144020 KEYWORDS . SOURCE Aspergillus sojae. ORGANISM Mitochondrion Aspergillus sojae Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144020 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 1988" /organism="Aspergillus sojae" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 475 a 210 c 288 g 401 t ORIGIN BASE COUNT 475 a 210 c 288 g 401 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaaua- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.subol 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus subolivaceus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus subolivaceus. ORGANISM Mitochondrion Aspergillus subolivaceus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29222 LOCUS ASU29222 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus subolivaceus NRRL 4998 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29222 NID g1144026 KEYWORDS . SOURCE Aspergillus subolivaceus. ORGANISM Mitochondrion Aspergillus subolivaceus Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144026 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 4998" /organism="Aspergillus subolivaceus" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 475 a 210 c 288 g 401 t ORIGIN BASE COUNT 475 a 210 c 288 g 401 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaaua- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.tamar 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus tamarii. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus tamarii. ORGANISM Mitochondrion Aspergillus tamarii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29224 LOCUS APU29224 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus tamarii NRRL 20818 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29224 NID g1144028 KEYWORDS . SOURCE Aspergillus tamarii. ORGANISM Mitochondrion Aspergillus tamarii Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144028 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 20818" /organism="Aspergillus tamarii" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 474 a 211 c 287 g 402 t ORIGIN BASE COUNT 474 a 211 c 287 g 402 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUUu----- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaca-- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCUA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.terri 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus terricola. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus terricola. ORGANISM Mitochondrion Aspergillus terricola. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29212 LOCUS ATU29212 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus terricola NRRL 426 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29212 NID g1144016 KEYWORDS . SOURCE Aspergillus terricola. ORGANISM Mitochondrion Aspergillus terricola Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144016 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 426" /organism="Aspergillus terricola" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 474 a 211 c 287 g 402 t ORIGIN BASE COUNT 474 a 211 c 287 g 402 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUUu----- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaca-- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCUA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.thomi 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aspergillus thomii. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aspergillus thomii. ORGANISM Mitochondrion Aspergillus thomii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U29217 LOCUS ATU29217 1374 bp DNA PLN 02-JAN-1996 DEFINITION Aspergillus thomii NRRL 2097 mitochondrial ribosomal RNA, small subunit, mitochondrial gene, partial sequence. ACCESSION U29217 NID g1144021 KEYWORDS . SOURCE Aspergillus thomii. ORGANISM Mitochondrion Aspergillus thomii Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae; mitosporic Trichocomaceae; Aspergillus. REFERENCE 1 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Phylogenetic analysis of Aspergillus based upon rDNA sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 1374) AUTHORS Peterson,S.W. TITLE Direct Submission JOURNAL Submitted (15-JUN-1995) Stephen W. Peterson, National Center for Agricultural Utilization Research, Microbial Properties Research, 1815 N. University St., Peoria, IL 61604, USA COMMENT NCBI gi: 1144021 FEATURES Location/Qualifiers source 1..1374 /strain="NRRL 2097" /organism="Aspergillus thomii" /mitochondrion rRNA <1..>1374 /product="small subunit ribosomal RNA" BASE COUNT 475 a 210 c 288 g 401 t ORIGIN BASE COUNT 475 a 210 c 288 g 401 t 3839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~G AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---uuaaua- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa--)----- --------UC CCUUauaa-- ---------- 1081 ---------- ---------- ---------- ---------- -----ac--g aaaggaaaau 1141 aaaag-ucc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUCU-UU |a------uc uCGG--GG-- 1321 -AGUAGUAGG AA-AG(GUAA UGA------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCUAAa---A U|CCGUA-GU CG|--UGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( auua-)---- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GCUGA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUAA --GUGU-AUU (--------a u--ugu---- 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucguau aaaauucuaa 1801 auaggauaau gauaaugaca auuuccuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAAU---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAGU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -Uu-AUgu-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGGG(a 2341 ugaaa)UAC- uuu---GAUA CCAG-AAG-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAUAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UGA 2521 U--GAAU-GU |CA|UAGGCU AGAuuu(aaa a-u------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----U UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUAACCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUuugaa uaacaauaaa a--------- 2881 ---------u ug--u----- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u a--c---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 ACU)CCUC-- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(aaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----c auaaagugGU -UCGCCA-C- (UACA-U)-- UGGaccAGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCuu a-ACAA-AGG GA--UGCGA- 3901 UAUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AAUG -GAGCUAAUC CCCA--aaau uGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--A-AU 4261 CUCAGC-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GGAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< -uaaguuuga 4381 uuugc-uuau guauuaauau auauaa(uca g)guauauaa auauguaagu auuauuuucg 4441 ua-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AU~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ -----~~~-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.E.nid.2 5213 bp RNA RNA 09-MAY-1996 DEFINITION Mitochondrion Emericella nidulans.; ATPase; cytochrome; cytochrome oxidase; oxidase; transfer RNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val; unidentified reading frame. ACCESSION J01390 KEYWORDS ATPase; cytochrome; cytochrome oxidase; oxidase; transfer RNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val; unidentified reading frame. SOURCE Mitochondrion Emericella nidulans. ORGANISM Mitochondrion Emericella nidulans. REFERENCE 1 (bases 5833 to 7155; 11536 to 12832) AUTHORS Kochel,H.G., Lazarus,C.M., Basak,N. and Kuntzel,H. TITLE Mitochondrial tRNA gene clusters in Aspergillus nidulans: organization and nucleotide sequence JOURNAL Cell 23 (2), 625-633 (1981) STANDARD No information REFERENCE 2 (bases 2205 to 4121) AUTHORS Kochel,H.G. and Kuntzel,H. TITLE Nucleotide sequence of the Aspergillus nidulans mitochondrial gene coding for the small ribosomal subunit RNA: homology to E. coli 16S rRNA JOURNAL Nucleic Acids Res. 9 (21), 5689-5696 (1981) STANDARD No information REFERENCE 3 (bases 1 to 2600; 3901 to 6000; 6901 to 11800; 12605 to AUTHORS Netzker,R., Kochel,H.G., Basak,N. and Kuntzel,H. TITLE Nucleotide sequence of Aspergillus nidulans mitochondrial genes coding for ATPase subunit 6, cytochrome oxidase subunit 3, seven unidentified proteins, four tRNAs and L-rRNA JOURNAL Nucleic Acids Res. 10 (15), 4783-4794 (1982) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: J01390, V00653 14440) [2] compares given sequence with that of E.coli 16S rRNA. [3]: one of the unidentified polypeptides (urf's) is located in the intron of the l-rRNA gene & codes for a basic protein of 410 residues. The other urf's are in spacer regions & code for hydrophobic proteins. Urf-a is homologous to human urf4, and urf-b produces a polypeptide of 48 residues resembling the human urf6l product (hydrophobic N-terminus, basic C-terminus). The ATPase subunit 6 genes from mitochondria and E.coli appear to share a common ancestor. The codon frequencies of identified genes and urf's are similar, and codons ending with G or C are rarely used. For partial sequence of A.nidulans mt apocytochrome b gene that lies within H2 region see <animtcyb1>, <animtcyb2>. s-rRNA = small ribosomal subunit RNA; l-rRNA = large ribosomal subunit RNA. BASE COUNT 500 a 208 c 300 g 429 t 3776 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------aaa auuuuGAGUU 661 (UGA-)U-GA U|GGCUC-UG AUUGAACGCU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUU------ ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---auua--- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- AACUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-UUug --GC---UAC CUUAA-AGUA 1021 AGGGG----- -------(aa aa-a)----- --------UC CCUUAUA--- ---------- 1081 ---------- ---------- ---------- ---------- -----AAAAG AAAGGAaaaa 1141 gaagg-UCC- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUGUU- --AAUUA-UU |a------uC ACGG--UG-- 1321 -AGUAGUAGU AA-AG(GUAA uga------- ---------- ---------- ------)CUU 1381 UACUA|---- GCUAA----A U|CCGUA-GU CG|--uGACU (GAGA--)GG UCGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)ACCCCA A|UGCgu--( uu-u-)--a- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)G GC-GA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGAAA --GUGU-AUU (--------a uaau------ 1621 --------)A AUACAAUAAC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )auaucguau aaaauucuaa 1801 auagaauaau gauaaugaca auuuucuauu ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----UAUAA GUCUU|-GAC 1921 -CAAaC---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAG|--- -AAG-ACU-- 1981 AGUGU-UAAU CAU--CUUUA UUAGGU|UUA AAGGGUACCU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGU ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UAUUUAC-UA 2281 G-----AGUU -UU-AUgu-a -AGAAG--GA -----|AGAA GCUCUG-GAG ---UAGUG(A 2341 UAUAA)UAC- GUA---UAUA CCAG-AGA-G ACU------- ----GGUAAC -GGC(-GAAG 2401 -)GC|A---- ----UCCUUC U-AUGUAAA- AA---CUGAC GUU--GAGGG ACGAA-GGCU 2461 U-GGG---UA GCAAGAAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGACAA-UGA 2521 U--GAAU-GU |CA|UAGACU AGAaaa(agu cguuuagacu au-------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)aaa-UU UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAU-U 2761 AG|ACCGUU- UCUGAG---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUGAUCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGUUUGAA Uau------- ---------- 2881 (--------u u--)------ ---------- -------<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->-------u a--C---AAG CGC-UG|CA- 3121 |CG|-GC--U |G------UU UU-UA|G-UU AAU-|GUC(G --UGA)GAUC U--GG(UUA- 3181 AGU)CCU-U- U-AAUUAACG AAA-ACCCU- ----cacuuu auuug----- -----(cauu 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----u auaaaguuGA -UCGCCU-U- (UAUA-U)-- UGGuu-AGAU 3781 A----AUA-G GGAUUA-AGA C-AAGUCAUC A|UGGC|CUU AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--UGCCUU U-ACAA-AGG GA--UGCGA- 3901 UUUU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UG---)AAAu uGAGCUAAUC CCCC-AAAAA AGG-AUAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAUC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--A-AA 4261 AUCAGC-UG- GGUACUAA-C -CACUCGUCA G-GCG--CUG AAA-GAAgua ugugcaa--- 4321 ---------- ---------- ---------- ---------- ---------< gaaguuugau 4381 uuacu-uaua uuuauaauau auauaa(uca g)uuauauau auuuauaagu uaaauuuucg 4441 ca-------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-U AAGUCGAAAU AUGGUUCG-U GUA-AU(GGA 4621 -A)AUU-GC- ACGGGAUGAA -----UUA-| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.chr.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Penicillium chrysogenum. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Penicillium chrysogenum. ORGANISM Mitochondrion Penicillium chrysogenum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L01493 DEFINITION Penicillium chrysogenum mitochondrial ribosomal RNA small subunit gene. SOURCE Mitochondrion Penicillium chrysogenum (organelle Mitochondrion Penicillium chrysogenum) (library: KCTC 1262) DNA. ORGANISM Mitochondrion Penicillium chrysogenum Eukaryota; Fungi; Ascomycota; Plectomycetes; Eurotiales; Trichocomaceae. REFERENCE 1 (bases 1 to 1482) AUTHORS Kochel,H. and Kuntzel,H. TITLE Nucleotide sequence of the Aspergillus nidulans mitochondrial gene coding for the small ribosomal subunit RNA: homology to E.coli 16S rRNA JOURNAL Nucleic Acids Res. 9, 5689-5696 (1981) REFERENCE 2 (bases 1 to 1482) AUTHORS Sekiguchi,J., Ohsaki,T., Yamamoto,H. and Koichi,K. TITLE Characterization and comparison of mitochondrial DNAs and rRNAs from Penicillium urticae and P.chrysogenum JOURNAL J. Gen. Microbiol. 136, 535-543 (1990) REFERENCE 3 (bases 1 to 1482) AUTHORS Sheen,J. TITLE Characterization and comparison of mitochondrial DNAs and RNAs from Penicillium urticae and P.chrysogenum JOURNAL Unpublished (1992) FEATURES Location/Qualifiers rRNA 95..>1482 /product="ribosomal RNA small subunit" source 1..1482 /organism="Mitochondrion Penicillium chrysogenum" /organelle="Mitochondrion Penicillium chrysogenum" /tissue_lib="KCTC 1262" /sequenced_mol="DNA" BASE COUNT 467 a 222 c 289 g 410 t 3825 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------aaa auagaGAGUU 661 (UGA-)ucga u|GGCUC-UA ACUGAACACU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUUuaau-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------uauu ---------- 841 aucu------ ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- --aauauuua AAUUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA--aG A|UAA--Uug --gc---UAC Cuuaa-cguA 1021 AGGGa----- -------(aa au-a)----- --------gC CCUUAUG--- ---------- 1081 ---------- ---------- ---------- ---------- -------acc caa-gu--ua 1141 auauu-acc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UA-GAUgau- --AUUUA-UC |--------- uCGG--UG-- 1321 -AGUAGUAGG AA-GG(-ua- uga------- ---------- ---------- ------)CUU 1381 U-CUA|---- GCA------- -|-------- --|--uAACU (AGGAA-)AG UUGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)AACCCA A|UGCuu--( uu-a-)--u- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ---GAAAC)G GU-GA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUCU --AUGU-AAC (--u------ uguau----- 1621 -------g)G UUACAuucgC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucgcau aaaauucuaa 1801 auagauugua uauaaugac- auauc-uau- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ----uUAUAA GUCU-|-GAC 1921 cCAAaC---U ACGU-G(-CC AGCAGUC-CG -GGU-AA)-U ACGUAG|--- -GAG-GCU-- 1981 AGUGU-UAGU UAU--CUUUA UUGGGU|UUA AAGGGUAAGU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaac)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -AU-AUga-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGAG(A 2341 UAAAA)UUUc gau-c-GAUA CCAG-GAG-G ACU------- ----GUCAAC -GGC(-GAAG 2401 -)GG|C---- ----UCCUUC U-AUGUAAU- AA---CUGAC GUU--GAGAG ACGAA-GGCU 2461 U-GG----UA GCAAACAGG( AUUAGAUAC) CCcuaAUAG| -UCCA-AGC- AGACAA-UGA 2521 U--GAAU-GU |CA|UACAUU AGAuau(aau ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)----UU UAAUGUA-UA AAC(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UACUAUG(-- -GCAA--)CA UAU---AACU GAA-UCAU-U 2761 AG|ACCGUU- -CUA-----A CCAGUAGU|G AA-------- |--------U CG(AUGAUCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGCUUGUA Uagca----- ---------- 2881 ---ua---uu au-aaaa--- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->aau-uguu a--c--aAGC CGC-UG|CA- 3121 |UG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 AUU)CCU-U- U-AAUUAACG AAA-ACCCU- ----cacuuu auuua----- -----(uuua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----u auaaaguggu cgcacaa-c- -ggaccagau aaucagggau 3781 g----cuA-G GGAUUA-AGA C-AAGUCAUU A|UGGC|CUU AAU------- ---------G 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCUU U-acaa-cgg ga--ugcga- 3901 uauu<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g uga--)aaug -gagcuaauc ccc--aaaAA AGG-AAAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAA- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAAC-- --)GUCACGG U-GCA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- auuu--U-AU 4261 CUUAGU-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG Aaaaaaagaa gaugcag--- 4321 ---------- ---------- ---------- ---------- ---------< uaaguuugau 4381 uuuuu-ucug uguaa-guua uauauauuua u(-gau-)au auaaauaugc cacggauagu 4441 uu-cg-a-gc aaacuugacg ca-------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 -------ugc augacUUUGA UUGG-UGU-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.chr.2 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Penicillium chrysogenum. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Penicillium chrysogenum. ORGANISM Mitochondrion Penicillium chrysogenum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z23072, L01493 DEFINITION P.chrysogenum mitochondrion genes for tRNA-Arg, tRNA-Asn, tRNA-Tyr, small subunit rRNA, and ATPase subunit 6 SOURCE Penicillium chrysogenum ORGANISM Mitochondrion Penicillium chrysogenum Eukaryota; Plantae; Thallobionta; Eumycota; Ascomycotina; Plectomycetes; Eurotiales; Trichocomaceae. REFERENCE 1 (bases 1 to 4785) AUTHORS Kochel,H. and Kuntzel,H. TITLE Nucleotide sequence of the Aspergillus nidulans mitochondrial gene coding for the small ribosomal subunit RNA: homology to E.coli 16S rRNA JOURNAL Nucleic Acids Res. 9, 5689-5696 (1981) REFERENCE 2 (bases 1 to 4785) AUTHORS Sheen,J., Kim,S., Kho,Y.H. and Bae,K.S. TITLE Genomic DNA sequences of mitochondrial tRNA genes in fungi Penicillium chrysogenum KCTC1262:tRNA-arg, tRNA-asn, and tRNA-tyr genes JOURNAL Nucleic Acids Res. 20, 5842-5842 (1992) REFERENCE 3 (bases 1 to 4785) AUTHORS Sheen,J. TITLE Genomic sequence of mitochondrial DNA: Genes for tRNA-arg,tRNA-asn, tRNA-tyr,ATPase subunit 6,and SSU-rRNA gene in Penicillium chrysogenum JOURNAL Unpublished REFERENCE 4 (bases 1 to 4785) AUTHORS Sheen,J. TITLE Direct Submission JOURNAL Submitted (18-JUN-1993) Sheen J., Genetic Engineering Research Institute, K.I.S.T., Korean Collection for Type Cultures, Taeduck Science Town, Yuseong-gu, Taejeon, Republic of Korea, 305-606 FEATURES Location/Qualifiers source 1..4785 /organism="Penicillium chrysogenum" /mitochondrion /strain="KCTC 1262" /clone="pSR-H2" tRNA 729..798 /function="transfer RNA for amino acid arginine" /product="tRNA-Arg" /gene="tRNA-Arg" /anticodon=(pos:761..763,aa:Arg) /citation=([2],[3]) /note="Arg-tRNA gene, identified by the cloverleaf structure of its putative transcript and assigned to the amino acid arginine by its anticodon sequence UCU" tRNA 832..902 /function="transfer RNA for amino acid asparagine" /product="tRNA-Asn" /gene="tRNA-Asn" /anticodon=(pos:864..866,aa:Asn) /citation=([2],[3]) /note="Asn-tRNA gene, identified by the cloverleaf structure of its putative transcript and assigned to the amino acid asparagine by its anticodon sequence GUU" rRNA 2413..3861 /function="mitochondrial ribosome formation" /product="small subunit rRNA" /gene="s-rrna" /standard_name="SSU-rRNA" /citation=[3] /note="The coding region of SSU rRNA gene is defined by extensive homology with mitochondrial SSU rRNA of Aspergillus nidulans" tRNA 3960..4044 /function="transfer RNA for amino acid tyrosine" /product="tRNA-Tyr" /gene="tRNA-Tyr" /anticodon=(pos:3995..3997,aa:Tyr) /citation=([2],[3]) /note="Tyr-tRNA gene, identified by the cloverleaf structure of its putative transcript and assigned to the amino acid tyrosine by its anticodon sequence GUA" CDS 1258..2031 /function="Oxidative phosphorylation" /standard_name="ATPase 6" /citation=[3] /note="The coding region of ATPase subunit 6 gene is defined by extensive homology(about 84%) with ATPase subunit 6 of A.nidulans" /product="ATPase subunit 6" /codon_start=1 /translation="MRHLDFVLSPLDQFEVRDLFSLNANLLGNLHLSLTNIGLYLTIS IFLILTYSLLATNNNKIIPNNWSISQESIYATVHGIVVNQINPNKGQMFFPLMYVLFI FILVNNLIGLVPYSFASTSHFILTFSISFTVVLGATILGFQRHGLKFFSLFVPSGCPL ALLPLLVLIEFISYLSRNVSLGLRLAANILSGHMLLSILSGFTYNIMTSGIIFFILGL IPLAFIIAFSGLELAIAFIQAQVFVVLACSYIKDGLDLH" BASE COUNT 503 a 212 c 298 g 436 t 3764 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------aaa auagaGAGUU 661 (UGA-)U-GA U|GGCUC-UA ACUGAACACU -G-UCCA-AG |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGACU|AAUU AGUUuaau-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------uauu ---------- 841 aucu------ ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- --aauauuua AAUUAAGU|A 961 G--UA-GU|G GUGUACAGGU GAGUAA-aaG A|UAA-AUug --gc---UAC CUUAA-AGUA 1021 AGGGa----- -------(aa aa-a)----- --------uC CCUUAUA--- ---------- 1081 ---------- ---------- ---------- ---------- -------acc aaaggu--ua 1141 auauu-acc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAUgau- -aAUUUA-UC |--------- uCGG--UG-- 1321 -AGUAGUAGG AA-GG(-uaa uga------- ---------- ---------- ------)CUU 1381 UUCUA|---- GCAau---aa a|CCGUA-GU CG|--uAACU (GGAA--)AG UUGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)AACCCA A|UGCuu--( uu-a-)--u- GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----GAAA)C GU-GA-ACC| 1561 A|-GUAA-C- UU-GGA---- -AGAAUGUCU --AUGU-AAC (--u------ uguau----- 1621 -------g)G UUACAuucgC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )aacucgcau aaaauucuaa 1801 auagauugua uauaaugac- auaaucuau- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ----uUAUAA GUCUU|-GAC 1921 -CAAaC---U ACGU-G(-CC AGCAGUC-GC -G-U-AA)-U ACGUAG|--- -GAG-GCU-- 1981 AGUGU-UAGU UAU--CUUUA UUGGGU|UUA AAGGGUAAGU -A-GACG|GU AAAUUA--AA 2041 |CUC------ ---------- -------(-- --uaaac)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GAGu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U UUUUUAC-UA 2281 G-----AGUU -AU-AUga-g -AGAAG--GA -----|AGAA UUUCUG-GAG ---UAGAG(A 2341 UAAAA)UUU- GAU---GAUA CCAG-GAG-G ACU------- ----GUCAAC -GGC(-GAAG 2401 -)GC|G---- ----UCCUUC U-AUGUAAU- AA---CUGAC GUU--GAGAG ACGAA-GGCU 2461 U-GGG---UA GCAAACAGG( AUUAGAUAC) CCUA-AUAG| -UCCA-AGC- AGACAA-UGA 2521 U--GAAU-GU |CA|UACAUU AGAuau(aau ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)----UU UAAUGUA-UA AAC(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UACUAUG(-- -GCAA--)CA UAU--AAACU GAAAUCAu-U 2761 AG|ACCGUU- UCUAAA---A CCAGUAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUGAUCC 2821 G--------- ----)CGAAA A-ACCUUACC ACAGCUUGUA Uagca----- ---------- 2881 ---ua---uu au-aaaa--- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- --aau-uguu a--c---AAG -GC-UG|CA- 3121 |UG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAUU U--GG(UUA- 3181 AUU)CCU-U- U-AAUUAACG AAA-ACCCU- ----cacuuu auuua----- -----(uuua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----u auaaaguggu -ucgcuacua cau------- cggaccagau 3781 a----auA-G GGAUUA-AGA C-AAGUCAUU A|UGGC|CUU AAU------- ---------G 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--CGCCUU U-acaa-cgg ga--ugcga- 3901 uauu------ ---------- ---------- ---------- ---------- ---------- 3961 ---------- ------(--g uga--)aaug -gagcuaauc ccc--aaaAA AGG-AAAUAA 4021 ---------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAA- -AAGGAAUUA 4141 C-U--AGUAA U-CGUGAA(- UCACCAAC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--U-AU 4261 CUUAGU-UA- GGUACUAA-C -CACUCGUCA G-GCG--CUG Aaa-aaagaa gaugcag--- 4321 ---------- ---------- ---------- ---------- ---------< uaaguuugau 4381 uuuuu--cug uguaaaguua uauauauuua u(-gau-)au auaaauaugc -a-ggauagu 4441 uuucguaugc aaaa------ ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ----cUUUGA UUGG-UGU-U AAGUCGAAAU AAGGUUCG-U GUA-AU(GGA 4621 -A)AUU-GC- ACGGGGAGUA UAAAA----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.T.rubru 5213 bp RNA RNA 11-JAN-191 DEFINITION Trichophyton rubrum. ACCESSION No information KEYWORDS No information. SOURCE Trichophyton rubrum. ORGANISM Trichophyton rubrum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X88896 LOCUS TRMITOGEN 5207 bp DNA PLN 10-OCT-1995 DEFINITION T.rubrum ND4, ATP6, SSUrRNA, ND6, COXIII, ATP8, and 6 tRNA genes. ACCESSION X88896 KEYWORDS atp6 gene; atp8 gene; coxIII gene; ND4 gene; ND6 gene; small subunit ribosomal RNA; tRNA-Asp gene; tRNA-Gly gene; tRNA-Ile gene; tRNA-Lys gene; tRNA-Trp gene; tRNA-Tyr gene. SOURCE Trichophyton rubrum. ORGANISM Mitochondrion Trichophyton rubrum Eukaryotae; mitochondrial eukaryotes; Eumycota; Ascomycotina; Plectomycetes; Onygenales; Arthrodermataceae; mitosporic Arthrodermataceae; Trichophyton. REFERENCE 1 (bases 1 to 5207) AUTHORS de Bievre,C. and Dujon,B. TITLE Organisation of the mitochondrial genome of Trichphyton rubrum JOURNAL Unpublished REFERENCE 2 (bases 1 to 5207) AUTHORS de Bievre,C. TITLE Direct Submission JOURNAL Submitted (21-JUN-1995) to the EMBL/GenBank/DDBJ databases. C. De Bievre, Institut Pasteur, 25 rue du Docteur ROUX, F75724 Paris-cedex 15, FRANCE COMMENT NCBI gi: 1017446 FEATURES Location/Qualifiers source 1..5207 /organism="Trichophyton rubrum" /strain="IP.1817.89" /clone_lib="genomic library in pUC19" /clone="C1" /mitochondrion CDS <1..56 /gene="ND4" /note="pid:e200717; NCBI gi: 1017447" /codon_start=3 /transl_table=4 /translation="AVILDGLHYSVSGLIYN" CDS 359..1126 /gene="ATP6" /note="pid:e204052; NCBI gi: 1017448" /codon_start=1 /transl_table=4 /translation="MMFNNIISPLEQFEIKDLFSLNINIINLKMSLTNFGFYIIISTI IILTLHLLITYNNKLISNSWTLTKESIYATVHSVVINQINSKEGQNYFPFIYGLFIFI LMNNLLGLIPYSFSSTSHFILTFFISFTVVLGATILGFQKHQLKFFSLFVPSGCPLGL LPLLVLIELISYLARNVSLGLRLSANILSGHMLLVILSDFTFKIMSSGIFYFLIGLIP LAFIFAFSGLELGIAFIQSQVFIVLTCSYIRDSLELH" rRNA 1421..2824 /product="small subunit ribosomal RNA" tRNA 2870..2944 /gene="tRNA-Tyr" /product="tRNA-Tyrosine" CDS 3022..3633 /gene="ND6" /note="pid:e204053; NCBI gi: 1017449" /codon_start=1 /transl_table=4 /translation="MQLDLYVDKINNGFNSNILDILAFISIILGIYTIVSKNPVVSVL FLIGLFSTISIYLIMIGLTFIGLSYLLVYIGAVSILFLFILMLINIRISELVSTNNNY IPLAILSMITLVYILGQKIITNVVQFNILNSFTSSLFEKSFKESINYSNSLSWDTNLI DITHTSAIGNIMYSSYSFWLIIISLILLLAMVGSIVISIGRVI" CDS 3657..4466 /gene="COXIII" /note="pid:e204054; NCBI gi: 1017450" /codon_start=1 /transl_table=4 /translation="MSLYQRTNFQSHPYHLVWPSPWPFYNSLSLFILTTSGVLTMHGF SNMYIILFIAFINLVWCMTLWFRDIISEGTYLGNHTNAVQRGLNLGVGLFIASEALFF LAIFWTFFHSSLSPNVELGAQWPPLGIKAIDPFELPLLNNIILLSSGVTVNSNYHSLI QGNRKGALYGLVATILLAIVFTIFQGIEYSVSSFTISDGVYGSCFYFSTGFHGFHVLI GTAFLSVGLWRLLGYHLTDHHHLGYESGILYWHFVDVVWLILYVCIYFWGY" CDS 4540..4686 /gene="ATP8" /note="pid:e204055; NCBI gi: 1017451" /codon_start=1 /transl_table=4 /translation="MPQLIPFFFFNQVVFTLISLSFIFFVFSKYILPWIVRLYVSRNQ YNSL" tRNA 4704..4774 /gene="tRNA-Lys" /product="tRNA-Lysine" tRNA 4779..4848 /gene="tRNA-Gly2" /product="tRNA-glycine" tRNA 4857..4927 /gene="tRNA-Asp" /product="tRNA-Aspartate" tRNA 5021..5092 /gene="tRNA-Ile" /product="tRNA-Isoleucine" tRNA 5096..5165 /gene="tRNA-Trp" /product="tRNA-Tryptophan" BASE COUNT 1932 a 588 c 712 g 1975 t ORIGIN BASE COUNT 532 a 192 c 245 g 435 t 3809 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ------auaa auuuuGAGUU 661 (UGA-)U-GA U|GGCUC-UG ACUGAACGCU -A-UCCA-AG |UG-CU--UA ACAC-A-UGC 721 -UAAUCG-UA Cguca|uua- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- --aauaaaaa 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ----uaau|g 961 a---a-GU|G GUAAACAGGU GAGUAU-aua a-uau-uuu- -gac---uAC CUUAA-AGAA 1021 AGGu------ -------(ua aa-u)----- ---------c CCUUAUA--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---auc(aaa 1141 -----)gaa- ---------- -aa(uucu)u uc-------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGauguu- aauaaauauu |--------- uCGGUUUG-- 1321 -UAAUAauua a----(AUAA UAA------- ---------- ---------- ------)--- 1381 auaa-|---- UUAAC--aaa a|CCGUA-GU CG|--UAACU (GAGA--)AG UUGAUCGAC| 1441 CACAUU-AGG AA(UGAGA-- AA-)CUCCUA A|ugcg---( cuuua)---a gua----C-A 1501 GCA|GUG-AG GGAUAUUGGU C-AAUGACC( ---------- ----UAAC)G GUUGA-ACC| 1561 A|-GCAA-C- UU-GGA---- -agaaugcaa --ugua-uua (--------a aaauau---- 1621 --------)u aauac----- -aau-uaacg uguaaacgua uaaaauucua aauagauuaa 1681 agauaa---- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ugacaauuau cuauuuauua GUCUC|-GAC 1921 -CAA-Ua-cU ACGU-G(-CC AGC-GUC-GC --GU-AA)-G ACGUAA|--- -GAG-ACA-- 1981 AGUGU-AAGU CAU--cuuaa uuaGGU|UUA AAGUGUACAU -A-GACG|-a aaaaua-aa- 2041 -ccuuaaaaa gggua----c u--------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- uuuuuuc-UA 2281 G-----AGUU -UU-AU--aa aagaag--aa u----|UGAA UUUUUG-AAG ---AAAAG(A 2341 UAGAA)UUU- GCA---AAUA ACAA-AAA-G ACA------- ----GGUAGC -AGU(-UAAU 2401 -)AC|G---- ----accuuc u-UUAUAAA- AA---CUGAC GUU--GAGGU ACGAA-GGCU 2461 U-GGG---UA ACGAGCAGG( AUUAGAUAC) CCUA-GUAG| -UCCA-AGC- AGAAAA-UUC 2521 U--GAAU-GU |CA|UAAAuu ------(-aa aaa------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ -acUUUA-UA AAU(AAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UACAAUG(-- -GCAA--)CA UUA--AAACU GAAAUCAU-U 2761 AG|GCCGUC- UUUGAA---A CCAGUAGU|G AAGUAUGU-U |AUUUA--UU CG(AUAACCC 2821 G--------- ----)CGAUU A-AUCUUACC ACAAUUUGAA uaauau---- ---------- 2881 --uua---au u--------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ----a-uauu a--C---AUG CGC-UG|CA- 3121 |CG|-GC--U |G------UC UU-UA|G-UU AAU-|GUC(G --UGA)GAU- -uagg(uua- 3181 auu)ccu-a- c-aAUUAGCG AAA-ACCUug -----guau- uau------- -----(---- 3241 --)<-uua-- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----u auguauaaua uaccuug-cc (acua-g)au cggaauauau 3781 a-----uauA GGAUCA-AGA C-AAGUCAUC A|UGGC|CAA AAU------- ---------A 3841 U-U-GU-GGG CU-AUA--GA -CGUGCCACA UU--uuccau u-acaa-aag ga--uguua- 3901 uauu------ ---------- ---------- ---------- ---------- ---------- 3961 ---------- ------(--G UGA--)aaau a-agcuaauc cu----uaaa uuu-guac-- 4021 -aa------- -----UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-uc) G-AC-U--AC -A--UGAAU- -AAGGAAUUA 4141 C-U--AGUAA U-CGUUAA(- UCAUC-AC-- --)GUAACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--uuua 4261 cUCAAU-uaa GGUACUAA-C -CACUCGAAA G-GCG--CUG AAA-gaagaa a--------- 4321 ---------- ---------- ---------- ---------- ---------< ------ugca 4381 auaag-uuug auuugugaau auaaauaaau aua(uaaa)u aguuauaauu uuauauucau 4441 auuauuuucg aauguauaa- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ----cuuuaa UUGG-UGU-U AAGUCGAAAU AAGGUUCG-U GUA-AU(GGA 4621 -A)AUU-GC- ACGGG----- ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (7)-PYRENO 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.C.paras 5213 bp RNA RNA 12-NOV-1997 DEFINITION Mitochondrion Cryphonectria parasitica.; . ACCESSION AF029891 KEYWORDS . SOURCE Mitochondrion Cryphonectria parasitica. ORGANISM Mitochondrion Cryphonectria parasitica. REFERENCE 1 (bases 1 to 11565) AUTHORS Searles,D.B., Monteiro-Vitorello,C.B. and Bertrand,H. TITLE The mitochondrial small subunit ribosomal RNA gene of Cryphonectria parasitica is large and contains four introns JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 11565) AUTHORS Searles,D.B., Monteiro-Vitorello,C.B. and Bertrand,H. TITLE Direct Submission JOURNAL Submitted (13-OCT-1997) Microbiology, Michigan State University, East Lansing, MI 48824, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF029891 BASE COUNT 564 a 258 c 388 g 554 t 3449 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- guuauauuua uagguGAGUU 661 (UGG-)U-GA U|GGCUC-UG AUUGAACGCU -G-UCCA-AA |UG-CU--UG ACAC-A-UGC 721 -UAAUCG-UA CGuuu|aau- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uua uagcuuuuca 841 uauauuagua uuugagcccc auuauuuuuc guaguggugu aauauauuau uccuucgggu 901 ccuuccguaa ggaaggaccc -cuaagguaa caauauauug aagguuu--- ----auua|a 961 a---A-GU|G GUGUACAGGU GAGUGU--aA G|AUA-UUcg -gcc---GAC CUUGA-AGAG 1021 AGGgaaaa-- -------(ga aa-u)----- ---------a CCUCAUA--- ---------- 1081 ---------- ---------- ---------- ---------- --------aa uaaaau(agu 1141 u----)auuu aaua------ ---(----)- -----gcuau auuu(ggau) aaagggugua 1201 aaacc----- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGAggaa- aaGGUAU-CU |--------g uCGGGAUA-- 1321 -GGUAGUAGU UA-AG(GUAA UGG------- ---------- ---------- ------)CUU 1381 AACUA|---- GCCAAUAAUU C|UCGGA-GU CG|--AAGCU (GAAAU-)GG UUGAUCGAC| 1441 CACAUU-GGG AA(UGAAA-- AA-)AUCCCA A|GGCA---( ua-au)---U GUA----C-A 1501 GCA|GUG-AG GAAUUUUGGU C-AAUGCGC( ---------- ----UAAC)G GCUGA-ACU| 1561 G|-GCAA-C- UU-GGA---- -ugaacggac -cgacucuua -----cccaa agguugcauu 1621 auuauuauuu uu-------- ---------- ---------- ---------- ---------- 1681 auguaacuag uaggguaaug gugcaggaga ucuuuuuuag gaguaaaguu cuaaauauau 1741 gauugauaa- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ugacaauaua uaua-u-uaU GUCCU|-GAC 1921 -CAA-U---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAU|--- -GGG-ACU-- 1981 AGUGU-UAUU CAU--cuuaa auaGGU|UUA AAGGGUUCCU -A-GACG|GC UAAUgc-ca- 2041 -ccuuuaaaa gguaa----c u--------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- AGUUAGC-UA 2281 G-----AGUU -UU-AU--gu gAAGAG--GU -----|CGUA CUUUUGaGUG ---GAGAG(U 2341 UUAAA)UUC- UUU---GAUA CCUG-GAG-G ACG------- ----GAUAAA -GGC(-GAAG 2401 -)GC|A---- ----ACCUCU U-AUGUAAA- AA---CUGAC GUU--GAGGA ACGAA-GGCA 2461 uugcg---UC ACGAAAAGG( ACUAGGGAC) CCUA-GUAG| -ucuu-UGC- AGAAAA-UgA 2521 U--GAGU-GC |CA|UAGAUU agg---(-uu aauu------ ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)----cu uAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-C|--C|AC C-UCAA-GAG UAAUGCG(-- -GCAA--)CG CAG--GAACU GAAAUCAC-U 2761 AG|ACCGUU- UCUGAC---A CCAGCAGU|G AAGUAUGU+U |GUUUAA-UU CG(AUGACCC 2821 A--------- ----)CGAAA A-AUCUUACC ACAAUUUGAA ua-gaauaa- ---------- 2881 ---------- ---------- ---------- ---------- --aguaauua aaacuccauc 2941 uaaauuuccu uuuuuuuuuu gaauauuaag uauaauuaag gugguuuauu cauaguaauu 3001 agaaagugaa uauuggaucu uugguaguuu uagguagu-- ---------- ---------- 3061 ---------- ---------- ---------- -uuau-ucau a--C---AAG UGU-UG|CA- 3121 |CG|-GC--U |G------UU UC-CA|G-UU AAU-|GUU(G --UGA)AACu guggc(a--- 3181 aaa)gcca-u ggaAUUAACG UAA-ACC-ug ----agcuu- uau------- -----(---- 3241 --)<-uugug aa-uauuuua uuuu------ ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----g aua-gagcua caucauc-ug cuaua-u)ug gauuugauaa 3781 ------ca-G GGACUA-AGA C-AAGUCAUC A|UGGC|CUU AAU------- ---------A 3841 U-U-GU-GGG CU-AAA--GA -CGUGCCACA UA--uuccuu a-acaa-aga ga--ugcga- 3901 aaua------ ---------- ---------- ---------- ---------- ---------- 3961 ---------- ------(--G CAA--)uauu g-agcuaauc ucaa-aaaag agg-auaaaa 4021 --aau----- a----UAUGG --AUUGU-AG C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-uc) G-GC-U--GC -A--UGAAU- -AAGAAAUUG 4141 C-U--AGUAA U-CGUGAA(- UCACC-AU-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--A-AC 4261 CUUGGA-UU- GGUACUAA-C -CACUCGUCA C-AUG--CUG AAA-Ggagua ugcgcaauaa 4321 g--------- ---------- ---------- ---------- ---------< ---------- 4381 -------uuu gcuuucuuau uuuaaaucca uag(uaa-)u gauaggauua cauuuuuuua 4441 auaggauu-- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 cuucguaugc gugauucUAA UUAG-UGU-U AAGUCGAAAU ACGGUUCG-G GUA-GU(GGA 4621 -A)GUU-GC- CCGGGGCUga uuaaccauu| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.N.crass 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Neurospora crassa str. 74-OR23-1A. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Neurospora crassa str. 74-OR23-1A. ORGANISM Mitochondrion Neurospora crassa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L33367,Z34001 Same as Z34001. DEFINITION Neurospora crassa (clone p19StyrB1) mitochondrial 19S ribosomal RNA gene and transfer RNA-Tyr gene, complete. mitochondrial transfer RNA; transfer RNA-Tyr. SOURCE Mitochondrion Neurospora crassa (strain 74-OR23-1A, organelle ORGANISM Mitochondrion Neurospora crassa Eukaryota; Fungi; Ascomycota; Pyrenomycetes; Sordariales; Sordariaceae. REFERENCE 1 (bases 1 to 2071) AUTHORS Chiang,C.-C., Kennell,J.C., Wanner,L.A. and Lambowitz,A.M. TITLE A mitochondrial retroplasmid integrates into mtDNA by a novel mechanism involving the synthesis of a hybrid cDNA and homologous recombination FEATURES Location/Qualifiers rRNA 1..1971 /product="19S ribosomal RNA" /note="putative" tRNA 1972..2058 /anticodon=(pos:2008..2010,aa:Tyr) /product="transfer RNA-Tyr" /note="putative" source 1..2071 /organism="Mitochondrion Neurospora crassa" /strain="74-OR23-1A" /mitochondrion="Mitochondrion Neurospora crassa" /sequenced_mol="DNA" /tissue_type="mycelium" /tissue_lib="FGSC #2489" BASE COUNT 615 a 292 c 409 g 556 t 3341 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 --gauguaau aaaaaaaauu uuuuuuaauu uuauauuaca ucaauaaaaa uagauGAGUU 661 (UGG-)U-GA U|GGCUC-UG AUUGAACACU -G-UUCA-AA |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGuuu|aauu ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uu- --uggccuaa 841 gaaagggguu ucaucguggc uuaagcuaag ggguuuauug uggcuuaagc uaagguuuaa 901 ucuuugacuu aagcgggugu uuuaggggaa cuugugcccc uaaaaccucu u--aauua|a 961 a---A-GU|G GUGUACAGGU GAGUAU-aau a|uuu-uu-- --ucgcuuAA CUUAA-AGUG 1021 AAGg------ -------(ca aa-u)----- ---------c CUUCAUA--- ---------- 1081 ---------- ---------- ---------- ---------- -uugcaaaag gauauc(uua 1141 -----)ggca ccuguug-aa a--(----)- ----gg--gg ccua(cuua) uauuauaucc 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UAAGaggau- --gagaa-aa |-----guuu cAGAGAUA-- 1321 -GGUAGUUGU UA-AG(GUCA UGG------- ---------- ---------- ------)CUU 1381 AACAA|---- GCCAAUAAUU C|UCUUA-GU CG|--AAGCU (GAAAA-)GG CUGAUCGAC| 1441 CACAUU-GGG AA(UGAAA-- AA-)AUCCCA A|GGCA---( aa-ua)---G GUA----C-A 1501 GCA|GUG-AG GAAUCUUGGU C-AAUGGGC( ---------- ----CCAC)G CCUGA-ACU| 1561 G|-GUAA-C- UU-GGA---- -GGAAUGAGG -ggucaacuu (-----ugca aauggau--- 1621 --------)g agugau---C -GUU|agaag auccuuaguc cccuggucuu cuugacacau 1681 gagguauaua cuucuagucc auauuggggg gagacuccac gucgauu--- --uaucgagu 1741 aaaauucugu auacauauug gauaa----- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ugacaauaug uaca---uuu GUCUU|-GAC 1921 -UAA-U---U ACGU-G(-CC AGCAGUC-GC -GGC-AA)-U ACGUAA|--- -GAG-ACU-- 1981 AGUGU-UAAU CAU--cauaa auaGGU|UUA AAGGGUACUC -A-GACG|GA AAAAUu-cg- 2041 cccaaauaua gggga----c ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|a AUUUUUC-UA 2281 G-----AGUU -UU-AU--gu aAGAAG--GU -----|CGUA CUCUAGaGUG ---GAGAG(A 2341 UAAAA)UUC- ugu---GAUA CCUA-GGG-G ACG------- ----GGUAAA -GGC(-GAAG 2401 -)GC|A---- ----AUCUUU U-AUGUAAA- AA---CUGAC GUC--GAAGG ACGAA-GGCA 2461 A-AGG---GA ACAAAAAGG( AUUAGAUAC) CCCA-GUAG| -UCUU-UGC- AGACAA-UUA 2521 U--GAAU-GC |CA|UAGGUU AGAuu-(-uu u--------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)--aaUU UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-U|--C|AC C-UCAA-GAG UAAGGCG(-- -GCAA--)CG CAG--GAACU GAAAUCAC-U 2761 AG|ACCGUU- UCUGAC---A CCAGCAAU|G AAGUAUGU-U |AUUUAA-UU CG(GUGACCC 2821 A--------- ----)CGAAA A-ACCUUACC ACAAUUGAAU -auuaauaau aaugauauua 2881 uuuuu---ua ug-cuugaua uggcaagcac ucaauuuucc ccuccccgua gguuugccgc 2941 ggggggggag aaaaaagaaa aauaauggau aauauaguaa auaccauauu ccaacuauau 3001 uuaau----- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- --uau-uaau a--C---AAG UGU-UG|CA- 3121 |CG|-GC--U |G------UC UU-CA|G-UU GAU-|GUU(G --CGA)AACu -gugg(uuc- 3181 guu)cca-uG G-AAUUAACG UAA-ACCCUU -----gcuu- uau------- -----(---- 3241 --)<-uugu- --aaau---a u--------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----u aua-aagcag uucaccu-u- (-uau-a)-u aggaaaugau 3781 a----AAA-G GGAUCA--GA C-AAGUCAUC A|UGGC|CUA AAU------- ---------A 3841 U-U-GU-GGG CU-AUA--GA -CGCGCCACA UU--uuccua a-acaa-aga ga--ugcaa- 3901 aaau------ ---------- ---------- ---------- ---------- ---------- 3961 ---------- ------(--G UGA--)auuu -uagcuaauc ucaa-aaaau agg-auaaaa 4021 aua------- --ua-CAAGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-uc) GGAC-U--GC -A--UGAAU- -AAGAAAUUG 4141 C-U--AGUAA U-CGUGAA(- UCACC-AU-- --)GACACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--U-cc 4261 CUCGGA-UU- GGUACUAA-C -CACUCGUCA C-AUG--CUG AAA-GGAgu- ---------- 4321 ---------- ---------- ---------- ---------- ---------< --gcgugca- 4381 auaag-uuug cuuuucuauu auaaguaa-- guag-acaua uag-guuuag auguuauaau 4441 aggauccuuc guaugcgcg- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---gcucuGA UUAG-UGU-U AAGUCGAAAU ACGGUUCG-U GUA-GU(GGA 4621 -A)GUU-GC- ACGGGACUUA ucaauguug| aacaauacga uuggaua~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.ans.1 5213 bp RNA RNA ~?~???? DEFINITION Mitochondrion Podospora anserina. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Podospora anserina. ORGANISM Mitochondrion Podospora anserina. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X14734 Phylo:Mitochondria,Fungi,Podospora BASE COUNT 626 a 286 c 382 g 599 t 3320 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---uuuacuc acuuuaacca aaguuGAGUU 661 (UGG-)U-GA U|GGCUC-UG AUUGAACACU -G-UCCA-AA |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGuuu|aauu aaa--uu--- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- --uuacaguu 841 gca-----gu aaaguuauuc uuuccuuucu guaaaacugg uuauuaagga gguuuaaauu 901 uaggguuuau ucuccucuau uuauaagguu aaucucucua aagggguuuu uuuaauua|a 961 a---A-GU|G GUGUACAGGU GAGUAU-uau g|guu-uuuu --guac-uac cUAAA-AGUA 1021 AAGG------ -------(ca aa-u)----- ---------C CUUUAUA--- ---------- 1081 ---------- ---------- ---------- ---------- -----guaau aaagaa-cgg 1141 ucaug-uuc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UUAGAUgaa- --gauaa-aa |a----aucu cGGGGAAA-- 1321 -GGUAGUUGU UA-AG(GUAA uug------- ---------- ---------- ------)CUU 1381 AACAA|---- GCCUAGUAUU C|UCUUA-GU CG|--AAGCU (GAGAAA)GG UUGAUCGAC| 1441 CACAUU-GGG GA(UGAAA-- AA-)AUCCCA A|GGCaa--( ac-g-)--aa GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----UAAC)G GCUGA-ACU| 1561 G|-GUAA-C- UU-GGA---- -AGAAUG--- ---GCU-CCA (--u-----a aaa------- 1621 -------a)u ggaguuaauC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )uau-cgaau aaaauucugu 1801 auacauaccu -auaaugacg guau-guac- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----AUCUU GUCUU|-GAC 1921 -CAA-U---U GCGU-G(-CC AGCAGUC-GC -GGC-AA)-U ACGUAA|--- -GAG-ACU-- 1981 AGUGU-UAUU CAU--CUUAA AUAGGU|UUA AAGGGUACUU -A-GACG|GU AGAAUu--ug 2041 |CCU------ ---------- -------(-- ---uaac)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GGGa ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|A AUUUUAC-UA 2281 G-----AGUU -UU-AUau-a -AGAAG--AU c----|uuac ucuaga-GUG ---UAGAG(U 2341 UGUAA)UUC- AUU---AAUA Ccua-ggg-G ACU------- ----GGUAAA -GGC(-GAAG 2401 -)GC|A---- ----AUCUUU U-AUAUAAA- AA---CUGAC GUU--GAAGG ACGAA-GGCU 2461 U-AGG---UC ACAAAAAGG( AUUAGAUAC) CCAA-GUAG| -UCUU-AGC- AGUCAA-UUA 2521 U--GAAU-GC |CA|UAGGUU AGAu--(aua guuaaauaca aacaagggcg uaagcucgua 2581 uuaaauuuua cc-------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)---aUC UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-U|--C|AC C-UCAA-GAG UAAUGUG(-- -GCAA--)CG CAG--GAACU GAAAUCAC-U 2761 AG|ACCGUU- UCUGAC---A CCAGCAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUGACCC 2821 A--------- ----)CGAAA A-ACCUUACC ACAACUUGAA u--------- ---------- 2881 ---------- ---------- ---------- --------------- ---C---AAG UGU-UG|CA- 3121 |CG|-GC--U |G------UC UU-CA|G-UU GAU-|GUU(G --UGA)AACu g-ugg(uuc- 3181 ggu)ccau-G G-AAUUAACG AAA-ACCCUU -----gcuuu auuugua--- -----(aauu 3241 c-)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-ua-aa aua-aagcag uucaccu-g- (-uau-a)-u ggguuaugau 3781 a----AAA-G GGAUCA-AGA C-AAGUCCUC A|UGGC|CUU GAU------- ---------G 3841 U-U-GU-GGG CU-AUA--GA -CGUGCCACA UG--uaccua a-acaa-aga ga--ugcaa- 3901 aaau<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g uga--)auuu -uagcuaauc uccc-aaaau aggauaaaau 4021 -ua------- --ga-UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-uc) G-GC-U--AU -A--UGAAU- -AAGAAAUUG 4141 C-U--AGUAA U-CGUGGA(- UCACCAU--- --)GACACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--A-AC 4261 UUCGGA-UU- GGUACUAA-C -CACUCGUCA C-AUG--CUG AAA-GGAgu- ---------- 4321 ---------- ---------- ---------- ---------- ---------< augcgcaaua 4381 aguuu-gcug uucuguauua aacaagaaua gaugacg(-g ug)caagcua gauuuuauuu 4441 uuuaauaugg ggcucuucgu augugug--- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---acUCUGA UUAG-UGU-A AAGUCGAAAU ACGGUUCG-U GUA-GU(GGA 4621 -A)GUU-GC- ACGGGACUUA -----UUA-| UACUUAACAA UAAAAAUUUU UAUGAAAAUC 4681 CUCAAAUCAA AUUUUGAUUG AUUUUUAUAU AUAUAUAGGA AUAUAUUCUA AAUAUCACUU 4741 GUUAUAUUUA UUAUAUACUA UAUA|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.ans.2 5213 bp RNA RNA 05-SEP-1995 DEFINITION Mitochondrion Podospora anserina.; 16S ribosomal RNA homologue; 23S ribosomal RNA homologue; ATPase 6; ATPase 8; COI gene; COII gene; COIII gene; complete genome; cytb gene; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; cytochrome oxidase b apoprotein; NADH-ubiquinone oxidoreductase subunit 1; NADH-ubiquinone oxidoreductase subunit 2; NADH-ubiquinone oxidoreductase subunit 3; NADH-ubiquinone oxidoreductase subunit 4; NADH-ubiquinone oxidoreductase subunit 4L; NADH-ubiquinone oxidoreductase subunit 5; NADH-ubiquinone oxidoreductase subunit 6; ND1 gene; ND2 gene; ND3 gene; ND4 gene; ND4L gene; ND5 gene; ND6 gene; transfer RNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. ACCESSION X55026 M30937 M61734 KEYWORDS 16S ribosomal RNA homologue; 23S ribosomal RNA homologue; ATPase 6; ATPase 8; COI gene; COII gene; COIII gene; complete genome; cytb gene; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; cytochrome oxidase b apoprotein; NADH-ubiquinone oxidoreductase subunit 1; NADH-ubiquinone oxidoreductase subunit 2; NADH-ubiquinone oxidoreductase subunit 3; NADH-ubiquinone oxidoreductase subunit 4; NADH-ubiquinone oxidoreductase subunit 4L; NADH-ubiquinone oxidoreductase subunit 5; NADH-ubiquinone oxidoreductase subunit 6; ND1 gene; ND2 gene; ND3 gene; ND4 gene; ND4L gene; ND5 gene; ND6 gene; transfer RNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. SOURCE Mitochondrion Podospora anserina. ORGANISM Mitochondrion Podospora anserina. REFERENCE 1 (bases 1 to 100314) AUTHORS Cummings,D.J., Domenico,J.M. and Michel,F. TITLE DNA sequence and organization of the mitochondrial ND1 gene from Podospora anserina: analysis of alternate splice sites JOURNAL Curr. Genet. 14 (3), 253-264 (1988) STANDARD No information REFERENCE 2 (bases 1 to 100314) AUTHORS Cummings,D.J., Domenico,J.M. and Nelson,J. TITLE DNA sequence and secondary structures of the large subunit rRNA coding regions and its two class I introns of mitochondrial DNA from Podospora anserina JOURNAL J. Mol. Evol. 28 (3), 242-255 (1989) STANDARD No information REFERENCE 3 (bases 1 to 100314) AUTHORS Turker,M.S., Domenico,J.M. and Cummings,D.J. TITLE Excision-amplification of mitochondrial DNA during senescence in Podospora anserina. A potential role for an 11 base-pair consensus sequence in the excision process JOURNAL J. Mol. Biol. 198 (2), 171-185 (1987) STANDARD No information REFERENCE 4 (bases 1 to 100314) AUTHORS Cummings,D.J. and Domenico,J.M. TITLE Sequence analysis of mitochondrial DNA from Podospora anserina. Pervasiveness of a class I intron in three separate genes JOURNAL J. Mol. Biol. 204 (4), 815-839 (1988) STANDARD No information REFERENCE 5 (bases 1 to 100314) AUTHORS Cummings,D.J., Domenico,J.M., Nelson,J. and Sogin,M.L. TITLE DNA sequence, structure, and phylogenetic relationship of the small subunit rRNA coding region of mitochondrial DNA from Podospora anserina JOURNAL J. Mol. Evol. 28 (3), 232-241 (1989) STANDARD No information REFERENCE 6 (bases 1 to 100314) AUTHORS Cummings,D.J., MacNeil,I.A., Domenico,J. and Matsuura,E.T. TITLE Excision-amplification of mitochondrial DNA during senescence in Podospora anserina. DNA sequence analysis of three unique 'plasmids' JOURNAL J. Mol. Biol. 185 (4), 659-680 (1985) STANDARD No information REFERENCE 7 (bases 1 to 100314) AUTHORS Cummings,D.J., Michel,F. and McNally,K.L. TITLE DNA sequence analysis of the apocytochrome b gene of Podospora anserina: a new family of intronic open reading frame JOURNAL Curr. Genet. 16 (5-6), 407-418 (1989) STANDARD No information REFERENCE 8 (bases 1 to 100314) AUTHORS Cummings,D.J., Michel,F. and McNally,K.L. TITLE DNA sequence analysis of the 24.5 kilobase pair cytochrome oxidase subunit I mitochondrial gene from Podospora anserina: a gene with sixteen introns JOURNAL Curr. Genet. 16 (5-6), 381-406 (1989) STANDARD No information REFERENCE 9 (bases 1 to 100314) AUTHORS Cummings,D.J., Michel,F., Domenico,J.M. and McNally,K.L. TITLE DNA sequence analysis of the mitochondrial ND4L-ND5 gene complex from Podospora anserina. Duplication of the ND4L gene within its intron JOURNAL J. Mol. Biol. 212 (2), 269-286 (1990) STANDARD No information REFERENCE 10 (bases 1 to 100314) AUTHORS Cummings,D.J., Michel,F., Domenico,J.M. and McNally,K.L. TITLE Mitochondrial DNA sequence analysis of the cytochrome oxidase subunit II gene from Podospora anserina. A group IA intron with a putative alternative splice site JOURNAL J. Mol. Biol. 212 (2), 287-294 (1990) STANDARD No information REFERENCE 11 (bases 1 to 100314) AUTHORS Cummings,D.J., McNally,K.L., Domenico,J.M. and Matsuura,E.T. TITLE The complete DNA sequence of the mitochondrial genome of Podospora anserina JOURNAL Curr. Genet. 17 (5), 375-402 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X55026 BASE COUNT 654 a 294 c 399 g 633 t 3233 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ------guga uguuauugua auuuaauuua auuuaauuua uaauaucauu aauugauaaa 601 gugguguuaa auaaggcgug gcgcaagcuc gccuuuacuc acuuuaacca aaguuGAGUU 661 (UGG-)U-GA U|GGCUC-UG AUUGAACACU -G-UCCA-AA |UA-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGUUU|Aauu aaa--uu(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)uuacaguu 841 gca-----gu aaaguuauuc uuuccuuucu guaaaacugg uuauuaagga gguuuaaauu 901 uaggguuuau ucuccucuau uuauaagguu aaucucucua aagggguuuu uuuaauua|A 961 A---A-GU|G GUGUACAGGU GAGUAU-uau g|guu-uuuu --guac-uac cUAAA-AGUA 1021 AAGG------ -------(ca aa-u)----- ---------C CUUUAUA--- ---------- 1081 ---------- ---------- ---------- ---------- -----guaau aaagaa-cgg 1141 ucaug-uuc- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUU UUAGAUgaa- --gauaa-aA |a----aucu cGGGGAAA-- 1321 -GGUAGUUGU UA-AG(GUAA uug------- ---------- ---------- ------)CUU 1381 AACAA|---- GCCUAGUAUU C|UCUUA-GU CG|--AAGCU (GAGAAA)GG UUGAUCGAC| 1441 CACAUU-GGG GA(UGAAA-- AA-)AUCCCA A|GGCaa--( ac-g-)--aa GUA----C-A 1501 GCA|GUG-AG GAAUAUUGGU C-AAUGGCC( ---------- ----UAAC)G GCUGA-ACU| 1561 G|-GUAA-C- UU-GGA---- -AGAAUG--- ---GCU-CCA (--u-----a aaa------- 1621 -------a)u ggaguuaauC GAUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )uau-cgaau aaaauucugu 1801 auacauaccu -auaaugacg guau-guac- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -----AUCUU GUCUU|-GAC 1921 -CAA-U---U GCGU-G(-CC AGCAGUC-GC -GGC-AA)-U ACGUAA|--- -GAG-ACU-- 1981 AGUGU-UAUU CAU--CUUAA AUAGGU|UUA AAGGGUACUU -A-GACG|GU AGAAUu--ug 2041 |CCU------ ---------- -------(-- ---uaac)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ------GGGa ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|A AUUUUAC-UA 2281 G-----AGUU -UU-AUau-a -AGAAG--AU c----|uuac ucuaga-GUG ---UAGAG(U 2341 UGUAA)UUC- AUU---AAUA Ccua-ggg-G ACU------- ----GGUAAA -GGC(-GAAG 2401 -)GC|A---- ----AUCUUU U-AUAUAAA- AA---CUGAC GUU--GAAGG ACGAA-GGCU 2461 U-AGG---UC ACAAAAAGG( AUUAGAUAC) CCAA-GUAG| -UCUU-AGC- AGUCAA-UUA 2521 U--GAAU-GC |CA|UAGGUU AGAu--(aua guuaaauaca aacaagggcg uaagcucgua 2581 uuaaauuuua cc-------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)---aUC UAGUCUA-UA AAU(GAAA)G UG-UAAGCAU 2701 U-U|--C|AC C-UCAA-GAG UAAUGUG(-- -GCAA--)CG CAG--GAACU GAAAUCAC-U 2761 AG|ACCGUU- UCUGAC---A CCAGCAGU|G AAGUAUGU-U |AUUUAA-UU CG(AUGACCC 2821 A--------- ----)CGAAA A-ACCUUACC ACAACUUGAA u--------- ---------- 2881 ---------- ---------- ---------- --------------- ---C---AAG UGU-UG|CA- 3121 |CG|-GC--U |G------UC UU-CA|G-UU GAU-|GUU(G --UGA)AACu g-ugg(uuc- 3181 ggu)ccau-G G-AAUUAACG AAA-ACCCUU -----gcuuu auuugua--- -----(aauu 3241 c-)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-ua-aa aua-aagcag uucaccu-g- (-uau-a)-u ggguuaugau 3781 a----AAA-G GGAUCA-AGA C-AAGUCCUC A|UGGC|CUU GAU------- ---------G 3841 U-U-GU-GGG CU-AUA--GA -CGUGCCACA UG--uaccua a-acaa-aga ga--ugcaa- 3901 aaau<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g uga--)auuu -uagcuaauc uccc-aaaau aggauaaaau 4021 -ua------- --ga-UAUGG --AUUGU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-uc) G-GC-U--AU -A--UGAAU- -AAGAAAUUG 4141 C-U--AGUAA U-CGUGGA(- UCACCAU--- --)GACACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--A-AC 4261 UUCGGA-UU- GGUACUAA-C -CACUCGUCA C-AUG--CUG AAA-GGAgu- ---------- 4321 ---------- ---------- ---------- ---------- ---------< augcgcaaua 4381 aguuu-gcug uucuguauua aacaagaaua gaugacg(-g ug)caagcua gauuuuauuu 4441 uuuaauaugg ggcucuucgu augugug--- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---acUCUGA UUAG-UGU-A AAGUCGAAAU ACGGUUCG-U GUA-GU(GGA 4621 -A)GUU-GC- ACGGGACUUA -----UUA-| UACUUAACAA UAAAAAUUUU UAUGAAAAUC 4681 CUCAAAUCAA AUUUUGAUUG AUUUUUAUAU AUAUAUAGGA AUAUAUUCUA AAUAUCACUU 4741 GUUAUAUUUA UUAUAUACUA UAUA|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (6)-HEMIAS 5213 bp RNA RNA 25-JAN-1994 DEFINITION HEMIASCOMYCETES. ACCESSION No information KEYWORDS No information. SOURCE HEMIASCOMYCETES. ORGANISM HEMIASCOMYCETES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.P.canad 5213 bp RNA RNA 11-JAN-191 DEFINITION Pichia canadensis. ACCESSION No information KEYWORDS No information. SOURCE Pichia canadensis. ORGANISM Pichia canadensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: D49702 D31785 LOCUS HASMTPRO 1900 bp ds-DNA PLN 28-MAR-1995 DEFINITION Hansenula wingei mitochondrial gene for mitochondrial transfer RNA for Pro, mitochondrial small subunit ribosomal RNA and mitochondrial transfer RNA for Val. ACCESSION D49702 KEYWORDS mitochondrial transfer RNA; small subunit ribosomal RNA; transfer RNA-Val. SOURCE Mitochondrion Hansenula wingei (organelle Mitochondrion Hansenula wingei, strain 21) DNA. ORGANISM Mitochondrion Pichia canadensis Eukaryota; Fungi; Ascomycota; Hemiascomycetes; Endomycetales; Saccharomycetaceae. REFERENCE 1 (bases 1 to 1900) AUTHORS Okamoto,K., Sekito,T. and Yoshida,K. TITLE Nucleotide sequence, secondary structure and phylogenetic relationship of the small subunit rRNA from yeast Hansenula wingei mitochondria JOURNAL Unpublished (1995) COMMENT Submitted (15-Mar-1995) to DDBJ by: Kazuo Yoshida Department of Biological Science Hiroshima University 1-3-1 Higashi-Hiroshima Hiroshima 724 Japan Phone: 0824-24-7455 Fax: 0824-24-0734 E-mail: r515582@ue.ipc.hiroshima-u.ac.jp. NCBI gi: 725334 FEATURES Location/Qualifiers source 1..1900 /organism="Mitochondrion Hansenula wingei" /mitochondrion /strain="21" /sequenced_mol="DNA" tRNA 12..82 /gene="Pro-tRNA" /standard_name="Pro-tRNA" /note="putative" /function="Protein synthesis" /product="Mitochondrial transfer RNA for Pro" promoter 139..147 /standard_name="transcription initiation site" /note="putative" /function="yeast mitochondrial transcriptional initiation" rRNA 201..1737 /gene="SSU" /standard_name="mt SSU rRNA" /function="Protein synthesis" /evidence=experimental /product="Mitochondrial small subunit ribosomal RNA" misc_feature 205..264 /standard_name="Universally conserved region" /note="putative" /number=1 /label=U1 misc_feature 510..562 /standard_name="Universally conserved region" /note="putative" /number=2 /label=U2 misc_feature 720..804 /standard_name="Universally conserved region" /note="putative" /number=3 /label=U3 misc_feature 919..995 /standard_name="Universally conserved region" /note="putative" /number=4 /label=U4 misc_feature 1031..1148 /standard_name="Universally conserved region" /note="putative" /number=5 /label=U5 misc_feature 1308..1373 /standard_name="Universally conserved region" /note="putative" /number=6 /label=U6 misc_feature 1453..1592 /standard_name="Universally conserved region" /note="putative" /number=7 /label=U7 misc_feature 1657..1714 /standard_name="Universally conserved region" /note="putative" /number=8 /label=U8 misc_feature 1724..1733 /standard_name="mRNA binding sequence (anti-SD-like sequence)" /note="putative" /function="mRNA binding" tRNA 1809..1882 /gene="Val" /standard_name="Val-tRNA" /note="putative" /function="Protein synthesis" /product="Mitochondrial transfer RNA for Val" BASE COUNT 824 a 173 c 240 g 663 t ORIGIN BASE COUNT 672 a 144 c 207 g 514 t 3676 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- -aaaaGAAUA 661 (UGA-)U-GU U|AGUUC-AG ACUAAAUACU -A-UAUA-GA |GA-CA--UU ACAC-A-UGC 721 -AAAUCA-AA CGauu|auuu ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- --aaaaauaa 841 aauuga---- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---aaaua|a 961 uua-A-GU|G GUGUAUUCGU GAGUAA---a a|GAU-AGAA --Uaa--GAA CUAAU-AAUU 1021 CAAc------ -------(ua aa-u)----- ---------a UUGAAUA--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---aua(aau 1141 -----)aaa- --------ga uuu(aucu)a aauu------ ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GUUA UUAGUCAAG- --CUAUU-ua |--------- -UAGUAUA-- 1321 -GGUAUUAUG UA-GG(AUAA AAGC------ ---------- ---------- ------)CAU 1381 ACAUA|---- GCCCA--CAA U|CUAUA-GC AA|--UUAAU (UAAC--)GU UAUAAUUGU| 1441 CACGUC-GAU AA(UGAAA-- UA-)UAAUCG A|UAUCU--( au-a-)--AG AUA----C-A 1501 GCA|GUG-AG GAAUAUUGGG C-AAUGAUC( ---------- ---aaaaa)G AUUGA-CCC| 1561 A|-GUUA-U- CU-AUA---- -AUAAUGAAA --aaua-uag ------cuau uaaagc---- 1621 --------uu aaaauu--aa -AUU|ua--- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- -----uuuaa 1801 uaaaaaaaaa aauaaaauug guaaaaaaua aaguuauagg agagugaaaa uaaugauagu 1861 aacuucaaug aaaauuggua auaauaaaua aauuuauuau uauucugaua GUUCC|-AAC 1921 -UAA-A--AU AUGU-G(-CC AGCAGUU-GC -GGU-UA)-G ACAUAG|--- -GGA-GCA-- 1981 AGUAU-UAGU CAU--AUU-- ---GGU|UUA AAGGAUCCGU -AGAAUU|UA AAU------- 2041 ---------- ---------- -------(-- ---aaag)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- --AUUUA-UA 2281 G-----AGUU -AA-UA-aaa gUAAUA--AA -----|UGAA UUAUAA-UAG ---UAAUG(A 2341 UGAAA)UAU- UAU---GAUA AUUA-UAG-G ACA------- ----GACAAG -UUC(-GAAA 2401 -)GU|U---- ----UUUAUU A-UAAAU-U- AA---CUGAC AUU--GAGGG AUGAA-GGCU 2461 A-UAA---UA AUGACAUGG( AUUCGAUAC) CCAA-UUAA| -UUAU-AGC- AGUAAA-CUA 2521 U--GAAU-AC |UU|UUCUau ------(-ua uuaaaaau-- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ -aaAGAA-aA AGA(GAAA)U CA-AUAGUAU 2701 U-C|--C|AC C-AGGA-GAG UAUAAUU(-- -ACUC--)AA UUG--AAACC CAAUACAA-U 2761 AG|ACGGUU- AUAAUC---A AUAGCAGU|G GAGUAUGU-U |AUUUAA-UU CG(AUAAUCC 2821 G--------- ----)CGAAA A-AC-UUACC ACAUUUUGAA uaauuauu-- ---------- 2881 --aua---ua u--------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- --aau-aauu a--C---AGG CGU-UA|CA- 3121 |UA|-GU--U |G------UC UU-CA|G-UU CGU-|GCU(G --UGA)AGUU UAAGG(UUA- 3181 GUU)CCG-U- A-AACGAACG UAU-CCCUAU auaaauaaa- aaaaau---- -----(auua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|---aua uuu-auaa-u u---uacuau (-uua-a)au gcauaguaaa 3781 -----aAU-A GGAUUA-AGA C-AAAUCAUU A|UGAC|CCU AAU------- ---------A 3841 A-U-GU-GGG CA-AUA--GA -CGUACUAUA AA--aaaaua a-auaa-aau ca--aauaa- 3901 aaua-uauau aaaaaa---- ---------- ---------- -------auu uaauaagaa- 3961 -auaaaac-u ---------- ---------- -uauuuuaau auguuau-au auu-uauaua 4021 uaauaa---u ag---UAUGA --AUUAU-UU A-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-uc) G-UA-A--AU -A--UGAAA- -AAAGAAUUG 4141 C-U--AGUAA UCAGUUAU(- UAAUU-AA-- --)AUAACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--UAUU 4261 AAUUGU-UU- CGCACUAA-U -UACUCGUCA C-GCG--AUA Agu-uaaaaa uaauuacaaa 4321 aauuaa---- ---------- ---------- ---------- ---------< ---------- 4381 ---------u auuauuuaaa uaauauuuau auc(uuaa)u auuuauuaau uauuuuuaua 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ------uuua 4561 auuuaauaau aauuuuuaua UUAU-UGC-G AAGUCGAAAU ACAGUUAC-U GUA-GG(GGA 4621 -A)CCU-GC- AGUGGGCUAU ---------| auauuaucua uua-cauauu ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.cer.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Saccharomyces cerevisiae. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Saccharomyces cerevisiae. ORGANISM Mitochondrion Saccharomyces cerevisiae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X07799 DEFINITION Yeast mitochondrial 15S rRNA (KL14-4A) SOURCE yeast ORGANISM Mitochondrion Saccharomyces cerevisiae Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; Endomycetales; Saccharomycetaceae. REFERENCE 1 (bases 1 to 1649) AUTHORS Weiss-Brummer,B. TITLE Direct Submission JOURNAL Submitted (25-APR-1988) Weiss-Brummer B., Institut fuer Genetik und Mikrobiologie der Universitaet Muenchen, Maria-Ward-Str. 1a, 8000 Muenchen 19, FRG. REFERENCE 2 (bases 1 to 1649) AUTHORS Huettenhofer,A., Sakai,H. and Weiss-Brummer,B. TITLE Site specific AT-cluster insertions in the mitochondrial 15S rRNA gene of the yeast S. cerevisiae JOURNAL Nucleic Acids Res. 16, 8665-8674 (1988) REFERENCE 3 (bases 1 to 1649) AUTHORS Decoster,E., Vassal,A. and Faye,G. TITLE MSS1, a nuclear-encoded mitochondrial GTPase involved in the expression of COX1 subunit of cytochrome c oxidase JOURNAL J. Mol. Biol. 232, 79-88 (1993) FEATURES Location/Qualifiers source 1..1649 /organism="Saccharomyces cerevisiae" /mitochondrion /strain="KL14-4A" rRNA 1..1649 /product="15S ribosomal RNA" mutation replace(1138..1140,"taa") /citation=[3] /note="strain M12-54" BASE COUNT 697 a 144 c 206 g 602 t 3564 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- |--------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------a guaaaaaauu uauaaGAAUA 661 (UGA-)U-GU U|GGUUC-AG AUUAAGCGCU -A-AAUA-AG |GA-CA--UG ACAC-A-UGC 721 -GAAUCA-UA CGuuu|auua uu-------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- --gauaa--- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -gauaaua|a 961 aua-U-GU|G GUGUAAACGU GAGUAA-uuU U|AUUAGGAA --UUaauGAA CUAUA-GAAU 1021 AAGc------ -------(ua aa-u)----- ---------a CUUAAUA--- ---------- 1081 ---------- ---------- ---------- ---------- --uauuauua uauaaa(aau 1141 aa---)uuua uauaauaaaa a--(----)- ----ggauau auau(aua-) auauauauuu 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------AUCU AUAGUCAAG- --CCAAU-AA |--------- -UGGUUUA-- 1321 -GGUAGUAGG UU-UA(UUAA GAGU------ ---------- ---------- ------)UAA 1381 ACCUA|---- GCCAA--CGA U|CCAUA-AU CG|--AUAAU (GAAA--)GU UAGAACGAU| 1441 CACGUU-GAC UC(UGAAA-- UA-)UAGUCA A|UAUCU--( au-a-)--AG AUA----C-A 1501 GCA|GUG-AG GAAUAUUGGA C-AAUGAUC( ---------- ----GAAA)G AUUGA-UCC| 1561 A|-GUUA-C- UU-AUU---- -AGGAUGAUA --UAUA-AAA (--------- -aua------ 1621 --------)u uuuauu--uU -AUU|ua--- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- -----u-aaa 1741 uauuaaauau uuauaauaau aauaauaaua auauau-aua uauaaauuga uuaaaaauaa 1801 aauccauaaa uaauuaaaau aaugauauua auuaccauau auauuuu-ua uauggauaua 1861 uauauuaaua auaauauuaa uuuuauuauu auuaauaaua uauuuuaaua GUCCU|-GAC 1921 -UAA-U--AU UUGU-G(-CC AGCAGUC-GC -GGU-AA)-C ACAAAG|--- -AGG-GCG-- 1981 AGCGU-UAAU CAU--AAU-- ---GGU|UUA AAGGAUCCGU -AGAAUG|AA UUAUA----- 2041 |--------- ---------- -------(-- ----uau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- UAUAAUU-UA 2281 G-----AGUU -AA-UAaaau -UAAUU--AA -----|AGAA UUAUAA-UAG ---UAAAG(A 2341 UGAAA)UAAU AAU---AAUA AUUA-UAA-G ACU------- ----AAUAUA -UGU(-GAAA 2401 -)AU|A---- ----UUAAUU A-AAUAU-U- AA---CUGAC AUU--GAGGG AUUAA-AACU 2461 A-GAG---UA GCGAAACGG( AUUCGAUAC) CCGU-GUAG| -UUCU-AGU- AGUAAA-CUA 2521 U--GAAU-AC |AA|UUAUUU AUAAUA(-ua uau------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)uauaUA UAAAUAA-UA AAU(GAAA)A UG-AAAGUAU 2701 U-C|--C|AC C-UGAA-GAG UACGUUA(-- -GCAA--)UA AUG--AAACU CAAAACAA-U 2761 AG|ACGGUU- ACAGAC---U UAAGCAGU|G GAGCAUGU-U |AUUUAA-UU CG(AUAAUCC 2821 A--------- ----)CGACU A-ACCUUACC AUAUUUUGAA uauuauaa-- ---uaauua- 2881 (--------u ua-)-uaauu a--------- -------<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->uua-uauu a--C---AGG CGU-UA|CA- 3121 |UU|-GU--U |G------UC UU-UA|G-UU CGU-|GCU(G --CAA)AGUU UUAGA(U--- 3181 AAU)GUUCAU A-AACGAACA AAA-CUCCAU auauauaau- uuuaauua-- -----(uaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-uaauu uuauauua-- ----uuu-au (-uaa-u)au aaa---ga-- 3781 ------AA-G GAAUUA-AGA C-AAAUCAUA A|UGAU|CCU UAU------- ---------A 3841 A-U-AU-GGG UA-AUA--GA -CGUGCUAUA AU--AAAAUG A-UAAU-AAA AU--UAUau- 3901 aaaa(--- -----)uuuu -UAAUA-UAU UUUU-UUAUU AUA-UAUUAA 4021 ---------- -----UAUCA --AUUAU-AA U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-uc) G-AU-U--AU -A--UGAAA- -AAAGAAUUG 4141 C-U--AGUAA UACGUAAA(- UUAGU-AU-- --)GUUACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--U-CU 4261 AACUGU-UU- CGCACUAA-U -CACUCAUCA G-GCG--UUG AAA-CAUAUU AUU------- 4321 ---------- ---------- ---------- ---------- ---------< ---------a 4381 ucuua-uuau uuauauaaua uuuuuuaaua aau(auua)a uaauuauuaa uuuauauuua 4441 uuuauaucag a--------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------a auaauAUGAA UUAA-UGC-G AAGUUGAAAU ACAGUUAC-C GUA-GG(GGA 4621 -A)CCU-GC- GGUGGGCUUA ---------| uaaauaucuu aaauauucuu aca~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.cer.2 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Saccharomyces cerevisiae. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Saccharomyces cerevisiae. ORGANISM Mitochondrion Saccharomyces cerevisiae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X07800 DEFINITION Yeast mitochondrial 15S rRNA (777-3A) SOURCE yeast ORGANISM Mitochondrion Saccharomyces cerevisiae Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; Endomycetales; Saccharomycetaceae. REFERENCE 1 (bases 1 to 1651) AUTHORS Weiss-Brummer,B. TITLE Direct Submission JOURNAL Submitted (25-APR-1988) Weiss-Brummer B., Institut fuer Genetik u. Mikrobiologie der Universitaet Muenchen, Maria-Ward-Str. 1a, 8000 Muenchen 19, FRG. REFERENCE 2 (bases 1 to 1651) AUTHORS Huettenhofer,A., Sakai,H. and Weiss-Brummer,B. TITLE Site specific AT-cluster insertions in the mitochondrial 15S rRNA gene of the yeast S. cerevisiae JOURNAL Nucleic Acids Res. 16, 8665-8674 (1988) FEATURES Location/Qualifiers source 1..1651 /organism="Saccharomyces cerevisiae" /mitochondrion /strain="777-3A" rRNA 1..1651 /note="15S rRNA" BASE COUNT 698 a 145 c 205 g 603 t 3562 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------a guaaaaaauu uauaaGAAUA 661 (UGA-)U-GU U|GGUUC-AG AUUAAGCGCU -A-AAUA-AG |GA-CA--UG ACAC-A-UGC 721 -GAAUCA-UA CGuuu|auua uu-------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- --gauaa--- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -gauaaua|a 961 aua-U-GU|G GUGUAAACGU GAGUAA-uuU U|AUUAGGAA --UUaauGAA CUAUA-GAAU 1021 AAGc------ -------(ua aa-u)----- ---------a CUUAAUA--- ---------- 1081 ---------- ---------- ---------- ---------- --uauuauua uauaaa(aau 1141 aa---)uuua uauaauaaaa a--(----)- ----ggauau auau(aua-) auauauauuu 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------AUCU AUAGUCAAG- --CCAAU-AA |--------- -UGGUUUA-- 1321 -GGUAGUAGG UU-UA(UUAA GAGU------ ---------- ---------- ------)UAA 1381 ACCUA|---- GCCAA--CGA U|CCAUA-AU CG|--AUAAU (GAAA--)GU UAGAACGAU| 1441 CACGUU-GAC UC(UGAAA-- UA-)UAGUCA A|UAUCU--( au-a-)--AG AUA----C-A 1501 GCA|GUG-AG GAAUAUUGGA C-AAUGAUC( ---------- ----GAAA)G AUUGA-UCC| 1561 A|-GUUA-C- UU-AUU---- -AGGAUGAUA --UAUA-AAA (--------- -aua------ 1621 --------)u uuuauu--uU -AUU|ua--- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- -----u-aaa 1741 uauuaaauau uuauaauaau aauaauaaua auauau-aua uauaaauuga uuaaaaauaa 1801 aauccauaaa uaauuaaaau aaugauauua auuaccauau auauuuuuua uauggauaua 1861 uauauuaaua auaauauuaa uuuuauuauu auuaauaaua uauuuuaaua GUCCU|-GAC 1921 -UAA-U--AU UUGU-G(-CC AGCAGUC-GC -GGU-AA)-C ACAAAG|--- -AGG-GCG-- 1981 AGCGU-UAAU CAU--AAU-- ---GGU|UUA AAGGAUCCGU -AGAAUG|AA UUAUA----- 2041 |--------- ---------- -------(-- ----uau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- UAUAAUU-UA 2281 G-----AGUU -AA-UAaaau aUAAUU--AA -----|AGAA UUAUAA-UAG ---UAAAG(A 2341 UGAAA)UAAU AAU---AAUA AUUA-UAA-G ACU------- ----AAUAUA -UGU(-GAAA 2401 -)AU|A---- ----UUAAUU A-AAUAU-U- AA---CUGAC AUU--GAGGG AUUAA-AACU 2461 A-GAG---UA GCGAAACGG( AUUCGAUAC) CCGU-GUAG| -UUCU-AGU- AGUAAA-CUA 2521 U--GAAU-AC |AA|UUAUUU AUAAUA(-ua uau------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)uauaUA UAAAUAA-UA AAU(GAAA)A UG-AAAGUAU 2701 U-C|--C|AC C-UGAA-GAG UACGUUA(-- -GCAA--)UA AUG--AAACU CAAAACAA-U 2761 AG|ACGGUU- ACAGAC---U UAAGCAGU|G GAGCAUGU-U |AUUUAA-UU CG(AUAAUCC 2821 A--------- ----)CGACU A-ACCUUACC AUAUUUUGAA uauuauaa-- ---uaauua- 2881 (--------u ua-)-uaauu a--------- -------<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->uua-uauu a--C---AGG CGU-UA|CA- 3121 |UU|-GU--U |G------UC UU-UA|G-UU CGU-|GCU(G --CAA)AGUU UUAGA(U--- 3181 AAU)GUUCAU A-AACGAACA AAA-CUCCAU auauauaau- uuuaauua-- -----(uaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-uaauu uuauauua-- ----uuu-au (-uaa-u)au aaa---ga-- 3781 ------AA-G GAAUUA-AGA C-AAAUCAUA A|UGAU|CCU UAU------- ---------A 3841 A-U-AU-GGG UA-AUA--GA -CGUGCUAUA AU--AAAAUG A-UAAU-AAA AU--UAUau- 3901 aaaa(--- -----)uuuu -UAAUA-UAU UUUU-UUAUU AUA-UAUUAA 4021 ---------- -----UAUCA --AUUAU-AA U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-uc) G-AU-U--AU -A--UGAAA- -AAAGAAUUG 4141 C-U--AGUAA UACGUAAA(- UUAGU-AU-- --)GUUACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--U-CU 4261 AACUGU-UU- CGCACUAA-U -CACUCAUCA C-GCG--UUG AAA-CAUAUU AUU------- 4321 ---------- ---------- ---------- ---------- ---------< ---------a 4381 ucuua-uuau uuauauaaua uuuuuuaaua aau(auua)a uaauuauuaa uuuauauuua 4441 uuuauaucag a--------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------a auaauAUGAA UUAA-UGC-G AAGUUGAAAU ACAGUUAC-C GUA-GG(GGA 4621 -A)CCU-GC- GGUGGGCUUA ---------| uaaauaucuu aaauauucuu aca~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.cer.3 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Saccharomyces cerevisiae. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Saccharomyces cerevisiae. ORGANISM Mitochondrion Saccharomyces cerevisiae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X14966 DEFINITION Yeast mitochondrial 15S ribosomal RNA gene with ochre suppressor mutation MSU1 SOURCE yeast ORGANISM Mitochondrion Saccharomyces cerevisiae Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; Endomycetales; Saccharomycetaceae. REFERENCE 1 (bases 1 to 1998) AUTHORS Fox,T.D. TITLE Direct Submission JOURNAL Submitted (11-APR-1989) Fox T.D., Cornell University, Biotechnology Building, Genetics & Development, Ithaca NY 14853-2703, U S A. REFERENCE 2 (bases 1 to 1998) AUTHORS Shen,Z. and Fox,T.D. TITLE Substitution of an invariant nucleotide at the base of the highly conserved '530-loop' of 15S rRNA causes suppression of yeast mitochondrial ochre mutations JOURNAL Nucleic Acids Res. 17, 4535-4539 (1989) COMMENT The sequence overlaps with that reported by Huettenhofer et. al. in Nucl. Acids Res. 16:8665-8674(1988) X07799, X07800. Data kindly reviewed (19-Jul-1989) by Fox T.D. NCBI gi: 14221 FEATURES Location/Qualifiers source 1..1998 /organism="Saccharomyces cerevisiae" /mitochondrion /strain="V25T-R5" rRNA 251..1901 /note="15S ribosomal RNA" misc_feature 883 /note="MSU1 suppressor mutation" BASE COUNT 699 a 144 c 205 g 603 t 3562 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------a guaaaaaauu uauaaGAAUA 661 (UGA-)U-GU U|GGUUC-AG AUUAAGCGCU -A-AAUA-AG |GA-CA--UG ACAC-A-UGC 721 -GAAUCA-UA CGuuu|auua uu-------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- --gauaa--- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -gauaaua|a 961 aua-U-GU|G GUGUAAACGU GAGUAA-uuU U|AUUAGGAA --UUaauGAA CUAUA-GAAU 1021 AAGc------ -------(ua aa-u)----- ---------a CUUAAUA--- ---------- 1081 ---------- ---------- ---------- ---------- --uauuauua uauaaa(aau 1141 aa---)uuua uauaauaaaa a--(----)- ----ggauau auau(aua-) auauauauuu 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------AUCU AUAGUCAAG- --CCAAU-AA |--------- -UGGUUUA-- 1321 -GGUAGUAGG UU-UA(UUAA GAGU------ ---------- ---------- ------)UAA 1381 ACCUA|---- GCCAA--CGA U|CCAUA-AU CG|--AUAAU (GAAA--)GU UAGAACGAU| 1441 CACGUU-GAC UC(UGAAA-- UA-)UAGUCA A|UAUCU--( au-a-)--AG AUA----C-A 1501 GCA|GUG-AG GAAUAUUGGA C-AAUGAUC( ---------- ----GAAA)G AUUGA-UCC| 1561 A|-GUUA-C- UU-AUU---- -AGGAUGAUA --UAUA-AAA (--------- -aua------ 1621 --------)u uuuauu--uU -AUU|ua--- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- -----u-aaa 1741 uauuaaauau uuauaauaau aauaauaaua auauau-aua uauaaauuga uuaaaaauaa 1801 aauccauaaa uaauuaaaau aaugauauua auuaccauau auauuuuuua uauggauaua 1861 uauauuaaua auaauauuaa uuuuauuauu auuaauaaua uauuuuaaua GUCCU|-GAC 1921 -UAA-U--AU UUGU-A(-CC AGCAGUC-GC -GGU-AA)-C ACAAAG|--- -AGG-GCG-- 1981 AGCGU-UAAU CAU--AAU-- ---GGU|UUA AAGGAUCCGU -AGAAUG|AA UUAUA----- 2041 |--------- ---------- -------(-- ----uau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- UAUAAUU-UA 2281 G-----AGUU -AA-UAaaau aUAAUU--AA -----|AGAA UUAUAA-UAG ---UAAAG(A 2341 UGAAA)UAAU AAU---AAUA AUUA-UAA-G ACU------- ----AAUAUA -UGU(-GAAA 2401 -)AU|A---- ----UUAAUU A-AAUAU-U- AA---CUGAC AUU--GAGGG AUUAA-AACU 2461 A-GAG---UA GCGAAACGG( AUUCGAUAC) CCGU-GUAG| -UUCU-AGU- AGUAAA-CUA 2521 U--GAAU-AC |AA|UUAUUU AUAAUA(-ua uau------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)uauaUA UAAAUAA-UA AAU(GAAA)A UG-AAAGUAU 2701 U-C|--C|AC C-UGAA-GAG UACGUUA(-- -GCAA--)UA AUG--AAACU CAAAACAA-U 2761 AG|ACGGUU- ACAGAC---U UAAGCAGU|G GAGCAUGU-U |AUUUAA-UU CG(AUAAUCC 2821 A--------- ----)CGACU A-ACCUUACC AUAUUUUGAA uauuauaa-- ---uaauua- 2881 (--------u ua-)-uaauu a--------- -------<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->uua-uauu a--C---AGG CGU-UA|CA- 3121 |UU|-GU--U |G------UC UU-UA|G-UU CGU-|GCU(G --CAA)AGUU UUAGA(U--- 3181 UAA)GUUCAU A-AACGAACA AAA-CUCCAU auauauaau- uuuaauua-- -----(uaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-uaauu uuauauua-- ----uuu-au (-uaa-u)au aaa---ga-- 3781 ------AA-G GAAUUA-AGA C-AAAUCAUA A|UGAU|CCU UAU------- ---------A 3841 A-U-AU-GGG UA-AUA--GA -CGUGCUAUA AU--AAAAUG A-UAAU-AAA AU--UAUau- 3901 aaaa(--- -----)uuuu -UAAUA-UAU UUUU-UUAUU AUA-UAUUAA 4021 ---------- -----UAUGA --AUUAU-AA U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-uc) G-AU-U--AU -A--UGAAA- -AAAGAAUUG 4141 C-U--AGUAA UACGUAAA(- UUAGU-AU-- --)GUUACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--U-CU 4261 AACUGU-UU- CGCACUAA-U -CACUCAUCA C-GCG--UUG AAA-CAUAUU AUU------- 4321 ---------- ---------- ---------- ---------- ---------< ---------a 4381 ucuua-uuau uuauauaaua uuuuuuaaua aau(auua)a uaauuauuaa uuuauauuua 4441 uuuauaucag a--------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------a auaauAUGAA UUAA-UGC-G AAGUUGAAAU ACAGUUAC-C GUA-GG(GGA 4621 -A)CCU-GC- GGUGGGCUUA ---------| uaaauaucuu aaauauucuu aca~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.cer.4 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Saccharomyces cerevisiae. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Saccharomyces cerevisiae. ORGANISM Mitochondrion Saccharomyces cerevisiae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: V00704 DEFINITION Yeast mitochondrial gene encoding the 15S rRNA. SOURCE yeast ORGANISM Mitochondrion Saccharomyces cerevisiae Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; Endomycetales; Saccharomycetaceae. REFERENCE 1 (bases 1 to 1826) AUTHORS Li,M., Tzagoloff,A., Underbrink-Lyon,K. and Martin,N.C. TITLE identification of the paromomycin-resistance mutation in the 15 s rrna gene of yeast mitochondria JOURNAL J. Biol. Chem. 257, 5921-5928 (1982) COMMENT NCBI gi: 13545 FEATURES Location/Qualifiers source 1..1826 /organism="Saccharomyces cerevisiae" /mitochondrion rRNA 101..1786 /note="15S ribosomal RNA" mutation 1614 /note="C is G in paromomycin-resistant mutant" BASE COUNT 707 a 157 c 222 g 600 t 3527 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------a guaaaaaauu uauaaGAAUA 661 (UGA-)U-GU U|GGUUC-AG AUUAAGCGCU -A-AAUA-AG |GA-CA--UG ACGC-A-UAC 721 -GAGUCA-UA CGuuu|auua uu-------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- --gauaa--- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -gauaaua|a 961 aua-U-GU|G GUGUAAACGU GAGUAA-uuU U|AUUAGGAA --UUaauGAA CUAUA-GAAU 1021 AAGc------ -------(ua aa-u)----- ---------a CUUAAUA--- ---------- 1081 ---------- ---------- ---------- ---------- --uauuauua uauaaa(aau 1141 aa---)uuua uauaauaaaa a--(----)- ----ggauau auau(aua-) auauauauuu 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------AUCU AUAGUCAAG- --CCAAU-AA |--------- -UGGUUUA-- 1321 -GGUAGUAGG UU-UA(UUAA GAGU------ ---------- ---------- ------)UAA 1381 ACCUA|---- GCCAA--CGA U|CCAUA-AU CG|--AUAAU (GAAA--)GU UAGAACGAU| 1441 CACGUU-GAC UC(UGAAA-- UA-)UAGUCA A|UAUCU--( au-a-)--AG AUA----C-A 1501 GCA|GUG-AG GAAUAUUGGA C-AAUGAUC( ---------- ----GAAA)G AUUGA-UCC| 1561 A|-GUUA-C- UU-AUU---- -AGGAUGAUA --UAUA-AAA (--------- -aua------ 1621 --------)u uuuauu--uU -AUU|uaguu ccggggcccg gccacggaac cggacccg-- 1681 ---------- ---------- ---------- ---------- ---------a aaggag-aaa 1741 uauuaaauau uuauaauaau aauaauaaua auauau-aua uauaaauuga uuaaaaauaa 1801 aauccauaaa uaauuaaaau aaugauauua auuaccauau auauuuu--a uauggauaua 1861 uauauuaaua auaauauuaa uuu-auuauu auuaauaaua uauuuuaaua GUCCU|-GAC 1921 -UAA-U--AU UUGU-G(-CC AGCAGUC-GC -GGU-AA)-C ACAAAG|--- -AGG-GCG-- 1981 AGCGU-UAAU CAU--AAU-- ---GGU|UUA AAGGAUCCGU -AGAAUG|AA UUAUA----- 2041 |--------- ---------- -------(-- ----uau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- UAUAAUU-UA 2281 G-----AGUU -AA-UAaaau -UAAUU--AA -----|AGAA UUAUAA-UAG ---UAAAG(A 2341 UGAAA)UAAU AAU---AAUA AUUA-UAA-G ACU------- ----AAUAUA -UGU(-GAAA 2401 -)AU|A---- ----UUAAUU A-AAUAU-U- AA---CUGAC AUU--GAGGG AUUAA-AACU 2461 A-GAG---UA GCGAAACGG( AUUCGAUAC) CCGU-GUAG| -UUCU-AGU- AGUAAA-CUA 2521 U--GAAU-AC |AA|UUAUUU AUAAUA(-ua uau------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)uauaUA UAAAUAA-UA AAU(GAAA)A UG-AAAGUAU 2701 U-C|--C|AC C-UGAA-GAG UACGUUA(-- -GCAA--)UA AUG--AAACU CAAAACAA-U 2761 AG|ACGGUU- ACAGAC---U UAAGCAGU|G GAACAUGU-U |AUUUAA-UU CG(AUAAUCC 2821 A--------- ----)CGACU A-ACUUUACC AUAUUUUGAA uauuauaa-- ---uaauua- 2881 (--------u ua-)-uaauu a--------- -------<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->uua-uauu a--C---AGG CGU-UA|CA- 3121 |UU|-GU--U |G------UC UU-UA|G-UU CGU-|GCU(G --CAA)AGUU UUAGA(UUA- 3181 AAU)GUGCAU A-AACGACCA AAA-CUCCAU auauauaau- uuuuuaau-- -----(auau 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-auuaa aaauauua-- ----uuu-au (-uaa-u)au aaa---ga-- 3781 ------AA-G GAAUUA-AGA C-AAAUCAUA A|UGAU|CCU UAU------- ---------A 3841 A-U-AU-GGG UA-AUA--GA -CGUGCUAUA AU--AAAAUG A-UAAU-AAA AU--UAUau- 3901 aaaa(--- -----)uuuu -UAAUA-UAU UUUU-UUAUU AUA-UAUUAA 4021 ---------- -----UAUGA --AUUAU-AA U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-uc) G-AU-U--AU -A--UGAAA- -AAAGAAUUG 4141 C-U--AGUAA UACGUAAA(- UUAGU-AU-- --)GUUACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--U-CU 4261 AACUGU-UU- CGCACUAA-U -CACUCAUCA C-GCG--UUG AAA-CAUAUU AUU------- 4321 ---------- ---------- ---------- ---------- ---------< ---------a 4381 ucuua-uuau uuauauaaua uuuuuuaaua aau(auua)a uaauuauuaa uuuauauuua 4441 uuuauaucag a--------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------a auaauAUGAA UUAA-UGC-G AAGUUGAAAU ACAGUUAC-C GUA-GG(GGA 4621 -A)CCU-GC- GGUGGGCUUA ---------| uaaauaucuu aaauauucuu aca~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.cer.5 5213 bp RNA RNA 08-JAN-1984 DEFINITION mitochondria,Saccharomyces cerevisiae(Santa Cruz version). ACCESSION No information KEYWORDS No information. SOURCE mitochondria,Saccharomyces cerevisiae(Santa Cruz version). ORGANISM mitochondria,Saccharomyces cerevisiae(Santa Cruz version). REFERENCE 1 (bases 1 to 100314) AUTHORS No information JOURNAL 5921(1982),Santa Cruz modified 3/8/84 STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5213) Corresponding GenBank entry: AJ011856 Phylo:Mitochondria,Fungi,Saccharomyces BASE COUNT 729 a 157 c 223 g 617 t 3487 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------a guaaaaaauu uauaaGAAUA 661 (UGA-)U-GU U|GGUUC-AG AUUAAGCGCU -A-AAUA-AG |GA-CA--UG ACGC-A-UAC 721 -GAGUCA-UA CGuuu|auua uu-------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- --gauaa--- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -gauaaua|a 961 aua-U-GU|G GUGUAAACGU GAGUAA-uuU U|AUUaGGAA --UUaauGAA CUAUA-GAAU 1021 AAGc------ -------(ua aa-u)----- ---------a CUUAAUA--- ---------- 1081 ---------- ---------- ---------- ---------- --uauuauua uauaaa(aau 1141 aa---)uuua uauaauaaaa a--(----)- ----ggauau auau(aua-) auauauauuu 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------AUCU AUAGUCAAG- --CCAAU-AA |--------- -UGGUUUA-- 1321 -GGUAGUAGG UU-UA(UUAA GAGU------ ---------- ---------- ------)UAA 1381 ACCUA|---- GCCAA--CGA U|CCAUA-AU CG|--AUAAU (GAAA--)GU UAGAACGAU| 1441 CACGUU-GAC UC(UGAAA-- UA-)UAGUCA A|UAUCU--( au-a-)--AG AUA----C-A 1501 GCA|GUG-AG GAAUAUUGGA C-AAUGAUC( ---------- ----GAAA)G AUUGA-UCC| 1561 A|-GUUA-C- UU-AUU---- -AGGAUGAUA --UAUA-AAA (--------- -aua------ 1621 --------)U UUUAUu--uU -AUU|uaguu ccggggcccg gccacggaac cggacccg-- 1681 ---------- ---------- ---------- ---------- ---------a aaggag-aaa 1741 uauuaaauau uuauaauaau aauaauaaua auauau-aua uauaaauuga uuaaaaauaa 1801 aauccauaaa uaauuaaaau aaugauauua auuaccauau auauuuu--a uauggauaua 1861 uauauuaaua auaauauuaa uuu-auuauu auuaauaaua uauuuuaauA GUCCU|-GAC 1921 -UAA-U--AU UUGU-G(-CC AGCAGUC-GC -GGU-AA)-C ACAAAG|--- -AGG-GCG-- 1981 AGCGU-UAAU CAU--AAU-- ---GGU|UUA AAGGAUCCGU -AGAAUG|AA UUAUA----- 2041 |--------- ---------- -------(-- ----uau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- UAUAAUU-UA 2281 G-----AGUU -AA-UAAAAU -UAAUU--AA -----|AGAA UUAUAA-UAG ---UAAAG(A 2341 UGAAA)UAAU AAU---AAUA AUUA-UAA-G ACU------- ----AAUAUA -UGU(-GAAA 2401 -)AU|A---- ----UUAAUU A-AAUAU-U- AA---CUGAC AUU--GAGGG AUUAA-AACU 2461 A-GAG---UA GCGAAACGG( AUUCGAUAC) CCGU-GUAG| -UUCU-AGU- AGUAAA-CUA 2521 U--GAAU-AC |AA|UUAUUU AUAaua(-ua uau------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)uauaUA UAAAUAA-UA AAU(GAAA)A UG-AAAGUAU 2701 U-C|--C|AC C-UGAA-GAG UACGUUA(-- -GCAA--)UA AUG--AAACU CAAAACAA-U 2761 AG|ACGGUU- ACAGAC---U UAAGCAGU|G GAACAUGU-U |AUUUAA-UU CG(AUAAUCC 2821 A--------- ----)CGACU A-ACUUUACC AUAUUUUGAA uauuauaa-- ---uaauua- 2881 (--------u ua-)-uaauu a--------- -------<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->uua-uauu a--C---AGG CGU-UA|CA- 3121 |UU|-GU--U |G------UC UU-UA|G-UU CGU-|GCU(G --CAA)AGUU UUAGA(UUA- 3181 AAU)GUGCAU A-AACGAGCA AAA-CUCCAU auauauaau- uuuuuaau-- -----(auau 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-auuaa aaauauua-- ----uuu-au (-uaa-u)au aaa---ga-- 3781 ------AA-G GAAUUA-AGA C-AAAUCAUA A|UGAU|CCU UAU------- ---------A 3841 A-U-AU-GGG UA-AUA--GA -CGUGCUAUA AU--AAAAUG A-UAAU-AAA AU--UAuau- 3901 aaaa(--- -----)uuuu -UAAUA-UAU UUUU-UUAUU AUA-UAUUAA 4021 ---------- -----UAUGA --AUUAU-AA U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-uc) G-AU-U--AU -A--UGAAA- -AAAGAAUUG 4141 C-U--AGUAA UACGUAAA(- UUAGU-AU-- --)GUUACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--U-CU 4261 AACUGU-UU- CGCACUAA-U -CACUCAUCA C-GCG--UUG AAA-CAUauu auu------- 4321 ---------- ---------- ---------- ---------- ---------< ---------a 4381 ucuua-uuau uuauauaaua uuuuuuaaua aau(auua)a uaauuauuaa uuuauauuua 4441 uuuauaucag a--------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------a auaauAUGAA UUAA-UGC-G AAGUUGAAAU ACAGUUAC-C GUA-GG(GGA 4621 -A)CCU-GC- GGUGGGCUUA ---------| UAAAUAUCUU AAAUAUUCUU ACAUAAAUAU 4681 UAAUUCAAAU AUUAAUAUAA AUAUUAAUAU UAA~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.cer.6 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Saccharomyces cerevisiae. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Saccharomyces cerevisiae. ORGANISM Mitochondrion Saccharomyces cerevisiae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: J01459 V00704 DEFINITION yeast (s.cerevisiae) mt 15s rrna gene with paromomycin-resistant mutation ds80. SOURCE yeast (saccharomyces cerevisiae; omega(+) strains d273-10b, ds80 (from d273-10b/a121), kl14-4a) mitochondrial dna, clone pym132 (see comment). ORGANISM Mitochondrion Saccharomyces cerevisiae Eukaryota; Fungi; Eumycota; Hemiascomycetes; Endomycetales; Saccharomycetaceae. REFERENCE 1 (bases 256 to 2081) AUTHORS Li,M., Tzagoloff,A., Underbrink-Lyon,K. and Martin,N.C. TITLE identification of the paromomycin-resistance mutation in the 15 s rrna gene of yeast mitochondria JOURNAL J. Biol. Chem. 257, 5921-5928 (1982) REFERENCE 2 (bases 1 to 412) AUTHORS Osinga,K.A. and Tabak,H.F. TITLE initiation of transcription of genes for mitochondrial ribosomal rna in yeast: comparison of the nucleotide sequence around the 5'-ends of both genes reveals a homologous stretch of 17 nucleotides JOURNAL Nucleic Acids Res. 10, 3617-3626 (1982) COMMENT ds80 is a paromomycin-resistant strain that contains only the par locus. The mutation in the 15S rRNA gene indicates that the par locus is a genetic marker of the gene [1]. [2] also sequenced the 5' end of the 21S rRNA gene. Complete source information: yeast (saccharomyces cerevisiae; omega(+) strains d273-10b [1], ds80 (from d273-10b/a121) [1], kl14-4a [2]) mitochondrial dna, clone pym132 [1]. NCBI gi: 343907 FEATURES Location/Qualifiers unsure 23..27 /note="[2] uncertain about length of g-tract" misc_RNA 279..>2041 /note="15S rRNA precursor (15.5S) [2]" rRNA 356..2041 /note="15S rRNA" mutation 1869 /note="c in wild-type; g in ds80" source 1..2081 /organism="Saccharomyces cerevisiae" /mitochondrion BASE COUNT 707 a 158 c 221 g 600 t 3527 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------a guaaaaaauu uauaaGAAUA 661 (UGA-)U-GU U|GGUUC-AG AUUAAGCGCU -A-AAUA-AG |GA-CA--UG ACGC-A-UAC 721 -GAGUCA-UA CGuuu|auua uu-------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- --gauaa--- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -gauaaua|a 961 aua-U-GU|G GUGUAAACGU GAGUAA-uuU U|AUUAGGAA --UUaauGAA CUAUA-GAAU 1021 AAGc------ -------(ua aa-u)----- ---------a CUUAAUA--- ---------- 1081 ---------- ---------- ---------- ---------- --uauuauua uauaaa(aau 1141 aa---)uuua uauaauaaaa a--(----)- ----ggauau auau(aua-) auauauauuu 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------AUCU AUAGUCAAG- --CCAAU-AA |--------- -UGGUUUA-- 1321 -GGUAGUAGG UU-UA(UUAA GAGU------ ---------- ---------- ------)UAA 1381 ACCUA|---- GCCAA--CGA U|CCAUA-AU CG|--AUAAU (GAAA--)GU UAGAACGAU| 1441 CACGUU-GAC UC(UGAAA-- UA-)UAGUCA A|UAUCU--( au-a-)--AG AUA----C-A 1501 GCA|GUG-AG GAAUAUUGGA C-AAUGAUC( ---------- ----GAAA)G AUUGA-UCC| 1561 A|-GUUA-C- UU-AUU---- -AGGAUGAUA --UAUA-AAA (--------- -aua------ 1621 --------)u uuuauu--uU -AUU|uaguu ccggggcccg gccacggaac cggacccg-- 1681 ---------- ---------- ---------- ---------- ---------a aaggag-aaa 1741 uauuaaauau uuauaauaau aauaauaaua auauau-aua uauaaauuga uuaaaaauaa 1801 aauccauaaa uaauuaaaau aaugauauua auuaccauau auauuuu--a uauggauaua 1861 uauauuaaua auaauauuaa uuu-auuauu auuaauaaua uauuuuaaua GUCCU|-GAC 1921 -UAA-U--AU UUGU-G(-CC AGCAGUC-GC -GGU-AA)-C ACAAAG|--- -AGG-GCG-- 1981 AGCGU-UAAU CAU--AAU-- ---GGU|UUA AAGGAUCCGU -AGAAUG|AA UUAUA----- 2041 |--------- ---------- -------(-- ----uau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- UAUAAUU-UA 2281 G-----AGUU -AA-UAaaau -UAAUU--AA -----|AGAA UUAUAA-UAG ---UAAAG(A 2341 UGAAA)UAAU AAU---AAUA AUUA-UAA-G ACU------- ----AAUAUA -UGU(-GAAA 2401 -)AU|A---- ----UUAAUU A-AAUAU-U- AA---CUGAC AUU--GAGGG AUUAA-AACU 2461 A-GAG---UA GCGAAACGG( AUUCGAUAC) CCGU-GUAG| -UUCU-AGU- AGUAAA-CUA 2521 U--GAAU-AC |AA|UUAUUU AUAAUA(-ua uau------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)uauaUA UAAAUAA-UA AAU(GAAA)A UG-AAAGUAU 2701 U-C|--C|AC C-UGAA-GAG UACGUUA(-- -GCAA--)UA AUG--AAACU CAAAACAA-U 2761 AG|ACGGUU- ACAGAC---U UAAGCAGU|G GAACAUGU-U |AUUUAA-UU CG(AUAAUCC 2821 A--------- ----)CGACU A-ACUUUACC AUAUUUUGAA uauuauaa-- ---uaauua- 2881 (--------u ua-)-uaauu a--------- -------<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->uua-uauu a--C---AGG CGU-UA|CA- 3121 |UU|-GU--U |G------UC UU-UA|G-UU CGU-|GCU(G --CAA)AGUU UUAGA(UUA- 3181 AAU)GUGCAU A-AACGACCA AAA-CUCCAU auauauaau- uuuuuaau-- -----(auau 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-auuaa aaauauua-- ----uuu-au (-uaa-u)au aaa---ga-- 3781 ------AA-G GAAUUA-AGA C-AAAUCAUA A|UGAU|CCU UAU------- ---------A 3841 A-U-AU-GGG UA-AUA--GA -CGUGCUAUA AU--AAAAUG A-UAAU-AAA AU--UAUau- 3901 aaaa(--- -----)uuuu -UAAUA-UAU UUUU-UUAUU AUA-UAUUAA 4021 ---------- -----UAUCA --AUUAU-AA U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-uc) G-AU-U--AU -A--UGAAA- -AAAGAAUUG 4141 C-U--AGUAA UACGUAAA(- UUAGU-AU-- --)GUUACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--U-CU 4261 AACUGU-UU- CGCACUAA-U -CACUCAUCA C-GCG--UUG AAA-CAUAUU AUU------- 4321 ---------- ---------- ---------- ---------- ---------< ---------a 4381 ucuua-uuau uuauauaaua uuuuuuaaua aau(auua)a uaauuauuaa uuuauauuua 4441 uuuauaucag a--------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------a auaauAUGAA UUAA-UGC-G AAGUUGAAAU ACAGUUAC-C GUA-GG(GGA 4621 -A)CCU-GC- GGUGGGCUUA ---------| uaaauaucuu aaauauucuu aca~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.cer.7 5213 bp RNA RNA 06-JUL-1989 DEFINITION Mitochondrion Saccharomyces cerevisiae.; 15S ribosomal RNA; ribosomal RNA. ACCESSION V00702 M25039 KEYWORDS 15S ribosomal RNA; ribosomal RNA. SOURCE Mitochondrion Saccharomyces cerevisiae. ORGANISM Mitochondrion Saccharomyces cerevisiae. REFERENCE 1 (bases 1 to 1826) AUTHORS Sor,F. and Fukuhara,H. TITLE ribosomal RNA of yeast Nucleotide sequence of the gene for the mitochondrial 15S JOURNAL C. R. Acad. Sci., D, Sci. Nat. 291 (12), 933-936 (1980) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: V00702 BASE COUNT 709 a 154 c 232 g 613 t 3505 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------a guaaaaaauu uauaaGAAUA 661 (UGA-)U-GU U|GUUUC-AG AUUAAGCGCU -A-AAUA-AG |GA-CA--UG ACGC-A-UAC 721 -GAGUCA-UA CGuuu|auua uu-------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- --gauaa--- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -gauaaua|a 961 aua-U-GU|G GUGUAAACGU GAGUAA-uuU U|AUUAGGAA --UUaauGAA CUAUA-GAAU 1021 AAGc------ -------(ua aa-u)----- ---------a CUUAAUA--- ---------- 1081 ---------- ---------- ---------- ---------- --uauuauua uauaaa(aau 1141 aa---)uuua uauaauaaaa a--(----)- ----ggauau auau(aua-) auauauauuu 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------AUCU AUAGUCAAG- --CCAAU-AA |--------- -UGGUUUA-- 1321 -GGUAGUAGG UU-UA(UUAA GAGU------ ---------- ---------- ------)UAA 1381 ACCUA|---- GCCAA--CGA U|CCAUA-AU CG|--AUAAU (GAAA--)GU UAGAACGAU| 1441 CACGUU-GAC UC(UGAAA-- UA-)UAGUCA A|UAUCU--( au-a-)--AG AUA----C-A 1501 GCA|GUG-AG GAAUAUUGGA C-AAUGAUC( ---------- ----GAAA)G AUUGA-UCC| 1561 A|-GUUA-C- UU-AUU---- -AGGAUGAUA --UAUA-AAA (--------- -aua------ 1621 --------)u uuuauu--uU -AUU|uaguu ccggggcccg gccacggagc cgaacccg-- 1681 ---------- ---------- ---------- ---------- ---------a aaggag-aaa 1741 uauuaaauau uuauaauaau aauaauaaua auauau-aua uauaaauuga uuaaaaauaa 1801 aauccauaaa uaauuaaaau aaugauauua auuaccauau auauuuu--a uauggauaua 1861 uauauuaaua auaauauuaa uuu-auuauu auuaauaaua uauuuuaaua GUCCU|-GAC 1921 -UAA-U--AU UUGU-G(-CC AGCAGUC-GC -GGU-AA)-C ACAAAG|--- -AGG-GCG-- 1981 AGCGU-UAAU CAU--AAU-- ---GGU|UUA AAGGAUCCGU -AGAAUG|AA UUAUA----- 2041 |--------- ---------- -------(-- ----uau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- UAUAAUU-UA 2281 G-----AGUU -AA-UAaaau -UAAUU--AA -----|AGAA UUAUAA-UAG ---UAAAG(A 2341 UGAAA)UAAU AAU---AAUA AUUA-UAA-G ACU------- ----AAUAUA -UGU(-GAAA 2401 -)AU|A---- ----UUAAUU A-AAUAU-U- AA---CUGAC AUU--GAGGG AUUAA-AACU 2461 A-GAG---U- GCGAAACGG( AUUCGAUAU) UCGU-GUAG| UUUCU-AGU- AGUAAA-CUA 2521 U--GAAU-AC |AA|UUAUUU AUAAUA(-ua uau------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)uauaUA UAAAUAA-UA AAU(GAAA)A UG-AAAGUAU 2701 U-C|--C|AC C-UGAA-GAG UACGUUA(-- -GCAA--)UA AUG--AAACU CAAAACAA-U 2761 AG|ACGGUU- ACAGAC---U UAAGCAGU|G GAACAUGU-U |AUUUAA-UU CG(AUAAUCC 2821 A--------- ----)CGACU A-ACUUUACC AUAUUUUGAA uauuauaa-- ---uaauua- 2881 (--------u ua-)-uaauu a--------- -------<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->uua-uauu a--C---AGG CGU-UA|CA- 3121 |UU|-GU--U |G------UC UU-UA|G-UU CGU-|GCU(G --CAA)AGUU UUAGA(UUA- 3181 AAU)GUGCAU A-AACGAGCA AAA-CUCCAU auauauaau- uuu------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ --auauua-- ----uuu-au (-uaa-u)au aaa---ga-- 3781 ------AA-G GAAUUA-AGA C-AAAUCAUA A|UGAU|CCU UAU------- ---------A 3841 A-U-AU-GGG UA-AUA--GA -CGUGCUAUA AU--AAAAUG A-UAAU-AAA AU--UAUau- 3901 aaaa(--- -----)uuuu -UAAUA-UAU UUUU-UUAUU AUA-UAUUAA 4021 ---------- -----UAUGA --AUUAU-AA U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-uc) G-AU-U--AU -A--UGAAA- -AAAGAAUUG 4141 C-U--AGUAA UACGUAAA(- UUAGU-AU-- --)GUUACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--U-CU 4261 AACUGU-UU- CGCACUAA-U -CACUCAUCA G-GCG--UUG AAA-CAUAUU AUU------- 4321 ---------- ---------- ---------- ---------- ---------< ---------a 4381 ucuua-uuau uuauauaaua uuuuuuaaua aau(auua)a uaauuauuaa uuuauauuua 4441 uuuauaucag a--------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------a auaauAUGAA UUAA-UGC-G AAGUUGAA-U ACAGUUAC-C GUA-GG(GGA 4621 -A)CCU-GC- GGUGGGCUUA ---------| uaaauaucuu aaauauucuu acauagguau 4681 uaaucuaaau auugaauaug agguguungu agu~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.cer.8 5213 bp RNA RNA 15-JAN-1999 DEFINITION Mitochondrion Saccharomyces cerevisiae.; . ACCESSION AJ0118 6 KEYWORDS . SOURCE Mitochondrion Saccharomyces cerevisiae. ORGANISM Mitochondrion Saccharomyces cerevisiae. REFERENCE 1 (bases 1 to 85779) AUTHORS Foury,F., Roganti,T., Lecrenier,N. and Purnelle,B. TITLE The complete sequence of the mitochondrial genome of Saccharomyces cerevisiae JOURNAL FEBS Lett. 440 (3), 325-331 (1998) STANDARD No information REFERENCE 2 (bases 1 to 85779) AUTHORS MIPS. TITLE Direct Submission JOURNAL Submitted (16-DEC-1998) Data collected by MIPS on behalf of the European yeast mitochondrial genome sequencing project. MIPS at the Max-Planck-Institut fuer Biochemie, Am Klopferspitz 18a D-82152 Martinsried, Germany; E-mail: Mewes@mips.biochem.mpg.de STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AJ011856 BASE COUNT 697 a 144 c 206 g 602 t 3564 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- guaaaaaauu uauaaGAAUA 661 (UGA-)U-GU U|GGUUC-AG AUUAAGCGCU -A-AAUA-AG |GA-CA--UG ACAC-A-UGC 721 -GAAUCA-UA CGuuu|auua uu-------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- --gauaa--- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -gauaaua|a 961 aua-U-GU|G GUGUAAACGU GAGUAA-uuU U|AUUAGGAA --UUaauGAA CUAUA-GAAU 1021 AAGc------ -------(ua aa-u)----- ---------a CUUAAUA--- ---------- 1081 ---------- ---------- ---------- ---------- --uauuauua uauaaa(aau 1141 aa---)uuua uauaauaaaa a--(----)- ----ggauau auau(aua-) auauauauuu 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------AUCU AUAGUCAAG- --CCAAU-AA |--------- -UGGUUUA-- 1321 -GGUAGUAGG UU-UA(UUAA GAGU------ ---------- ---------- ------)UAA 1381 ACCUA|---- GCCAA--CGA U|CCAUA-AU CG|--AUAAU (GAAA--)GU UAGAACGAU| 1441 CACGUU-GAC UC(UGAAA-- UA-)UAGUCA A|UAUCU--( au-a-)--AG AUA----C-A 1501 GCA|GUG-AG GAAUAUUGGA C-AAUGAUC( ---------- ----GAAA)G AUUGA-UCC| 1561 A|-GUUA-C- UU-AUU---- -AGGAUGAUA --UAUA-AAA (--------- -aua------ 1621 --------)u uuuauu--uU -AUU|ua--- ---------- --uaaauauu ---------- 1681 ---------- ---------- ---------- ---------- ---------- -------aaa 1741 uauu-uaua- --auaauaau aauaauaaua uauauauaua aauugauuaa aaauaaaauc 1801 cauaaauaau uaaaauaaug auauuaauua ccauauauau -uuuuauaug gauauauaua 1861 u-uaauaaua auauua-au- uuu-auuauu auuaauaaua uauuuuaaua GUCCU|-GAC 1921 -UAA-U--AU UUGU-G(-CC AGCAGUC-GC -GGU-AA)-C ACAAAG|--- -AGG-GCG-- 1981 AGCGU-UAAU CAU--AAU-- ---GGU|UUA AAGGAUCCGU -AGAAUG|AA UUAUA----- 2041 |--------- ---------- -------(-- ----uau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- UAUAAUU-UA 2281 G-----AGUU -AA-UAaaau aUAAUU--AA -----|AGAA UUAUAA-UAG ---UAAAG(A 2341 UGAAA)UAAU AAU---AAUA AUUA-UAA-G ACU------- ----AAUAUA -UGU(-GAAA 2401 -)AU|A---- ----UUAAUU A-AAUAU-U- AA---CUGAC AUU--GAGGG AUUAA-AACU 2461 A-GAG---UA GCGAAACGG( AUUCGAUAC) CCGU-GUAG| -UUCU-AGU- AGUAAA-CUA 2521 U--GAAU-AC |AA|UUAUUU AUAAUA(-ua uau------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)UAUaUA UAAAUAA-UA AAU(GAAA)A UG-AAAGUAU 2701 U-C|--C|AC C-UGAA-GAG UACGUUA(-- -GCAA--)UA AUG--AAACU CAAAACAA-U 2761 AG|ACGGUU- ACAGAC---U UAAGCAGU|G GAGCAUGU-U |AUUUAA-UU CG(AUAAUCC 2821 A--------- ----)CGACU A-ACCUUACC AUAUUUUGAA uauuauaa-- ---uaauua- 2881 (--------u ua-)-uaauu a--------- -------<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->uua-uauu a--C---AGG CGU-UA|CA- 3121 |UU|-GU--U |G------UC UU-UA|G-UU CGU-|GCU(G --CAA)AGUU UUAGA(UUA- 3181 A--)GUUCAU A-AACGAACA AAA-CUCCAU auauauaau- uuuaauua-- -----(uaua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-uaauu uuauauua-- ----uuu-au (-uaa-u)au aaa---ga-- 3781 ------AA-G GAAUUA-AGA C-AAAUCAUA A|UGAU|CCU UAU------- ---------A 3841 A-U-AU-GGG UA-AUA--GA -CGUGCUAUA AU--AAAAUG A-UAAU-AAA AU--UAUau- 3901 aaaa(--- -----)uuuu -UAAUA-UAU UUUU-UUAUU AUA-UAUUAA 4021 ---------- -----UAUGA --AUUAU-AA U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-uc) G-AU-U--AU -A--UGAAA- -AAAGAAUUG 4141 C-U--AGUAA UACGUAAA(- UUAGU-AU-- --)GUUACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--U-CU 4261 AACUGU-UU- CGCACUAA-U -CACUCAUCA C-GCG--UUG AAA-CAUAUU AUU------- 4321 ---------- ---------- ---------- ---------- ---------< ---------a 4381 ucuua-uuau uuauauaaua uuuuuuaaua aau(auua)a uaauuauuaa uuuauauuua 4441 uuuauaucag a--------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------a auaauAUGAA UUAA-UGC-G AAGUUGAAAU ACAGUUAC-C GUA-GG(GGA 4621 -A)CCU-GC- GGUGGGCUUA ---------| uaaauaucuu aaauauucuu aca------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.cer.9 5213 bp RNA RNA 26-MAY-1995 DEFINITION Mitochondrion Saccharomyces cerevisiae.; 15S ribosomal RNA; transfer RNA-Trp. 11 of 19. ACCESSION L36895 M62622 KEYWORDS 15S ribosomal RNA; transfer RNA-Trp. 11 of 19. SOURCE Mitochondrion Saccharomyces cerevisiae. ORGANISM Mitochondrion Saccharomyces cerevisiae. REFERENCE 1 (bases 1 to 4350) AUTHORS de Zamaroczy,M. and Bernardi,G. TITLE Saccharomyces cerevisiae--a review The primary structure of the mitochondrial genome of JOURNAL Gene 47 (2-3), 155-177 (1986) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L36895 BASE COUNT 697 a 154 c 222 g 597 t 3543 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------a guaaaaaauu uauaaGAAUA 661 (UGA-)U-GU U|GUUUC-AG AUUAAGCGCU -A-AAUA-AG |GA-CA--UG ACGC-A-UAC 721 -GAGUCA-UA CGuuu|auua uu-------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- --gauaa--- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -gauaaua|a 961 aua-U-GU|G GUGUAAACGU GAGUAA-uuU U|AUUAGGAA --UUaauGAA CUAUA-GAAU 1021 AAGc------ -------(ua aa-u)----- ---------a CUUAAUA--- ---------- 1081 ---------- ---------- ---------- ---------- --uauuauua uauaaa(aau 1141 aa---)uuua uauaauaaaa a--(----)- ----ggauau auau(aua-) auauauauuu 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------AUCU AUAGUCAAG- --CCAAU-AA |--------- -UGGUUUA-- 1321 -GGUAGUAGG UU-UA(UUAA GAGU------ ---------- ---------- ------)UAA 1381 ACCUA|---- GCCAA--CGA U|CCAUA-AU CG|--AUAAU (GAAA--)GU UAGAACGAU| 1441 CACGUU-GAC UC(UGAAA-- UA-)UAGUCA A|UAUCU--( au-a-)--AG AUA----C-A 1501 GCA|GUG-AG GAAUAUUGGA C-AAUGAUC( ---------- ----GAAA)G AUUGA-UCC| 1561 A|-GUUA-C- UU-AUU---- -AGGAUGAUA --UAUA-AAA (--------- -aua------ 1621 --------)u uuuauu--uU -AUU|uaguu ccggggcccg gccacggagc cgaacccg-- 1681 ---------- ---------- ---------- ---------- ---------a aaggag-aaa 1741 uauuaaauau uuauaauaau aauaauaaua auauau-aua uauaaauuga uuaaaaauaa 1801 aauccauaaa uaauuaaaau aaugauauua auuaccauau auauuuu--a uauggauaua 1861 uauauuaaua auaauauuaa uuu-auuauu auuaauaaua uauuuuaaua GUCCU|-GAC 1921 -UAA-U--AU UUGU-G(-CC AGCAGUC-GC -GGU-AA)-C ACAAAG|--- -AGG-GCG-- 1981 AGCGU-UAAU CAU--AAU-- ---GGU|UUA AAGGAUCCGU -AGAAUG|AA UUAUA----- 2041 |--------- ---------- -------(-- ----uau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- UAUAAUU-UA 2281 G-----AGUU -AA-UAaaau -UAAUU--AA -----|AGAA UUAUAA-UAG ---UAAAG(A 2341 UGAAA)UAAU AAU---AAUA AUUA-UAA-G ACU------- ----AAUAUA -UGU(-GAAA 2401 -)AU|A---- ----UUAAUU A-AAUAU-U- AA---CUGAC AUU--GAGGG AUUAA-AACU 2461 A-GAG---U- GCGAAACGG( AUUCGAUAU) UCGU-GUAG| UUUCU-AGU- AGUAAA-CUA 2521 U--GAAU-AC |AA|UUAUUU AUAAUA(-ua uau------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)uauaUA UAAAUAA-UA AAU(GAAA)A UG-AAAGUAU 2701 U-C|--C|AC C-UGAA-GAG UACGUUA(-- -GCAA--)UA AUG--AAACU CAAAACAA-U 2761 AG|ACGGUU- ACAGAC---U UAAGCAGU|G GAACAUGU-U |AUUUAA-UU CG(AUAAUCC 2821 A--------- ----)CGACU A-ACUUUACC AUAUUUUGAA uauuauaa-- ---uaauua- 2881 (--------u ua-)-uaauu a--------- -------<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->uua-uauu a--C---AGG CGU-UA|CA- 3121 |UU|-GU--U |G------UC UU-UA|G-UU CGU-|GCU(G --CAA)AGUU UUAGA(UUA- 3181 AAU)GUGCAU A-AACGAGCA AAA-CUCCAU auauauaau- uuu------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ --auauua-- ----uuu-au (-uaa-u)au aaa---ga-- 3781 ------AA-G GAAUUA-AGA C-AAAUCAUA A|UGAU|CCU UAU------- ---------A 3841 A-U-AU-GGG UA-AUA--GA -CGUGCUAUA AU--AAAAUG A-UAAU-AAA AU--UAUau- 3901 aaaa(--- -----)uuuu -UAAUA-UAU UUUU-UUAUU AUA-UAUUAA 4021 ---------- -----UAUGA --AUUAU-AA U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-uc) G-AU-U--AU -A--UGAAA- -AAAGAAUUG 4141 C-U--AGUAA UACGUAAA(- UUAGU-AU-- --)GUUACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--U-CU 4261 AACUGU-UU- CGCACUAA-U -CACUCAUCA C-GCG--UUG AAA-CAUAUU AUU------- 4321 ---------- ---------- ---------- ---------- ---------< ---------a 4381 ucuua-uuau uuauauaaua uuuuuuaaua aau(auua)a uaauuauuaa uuuauauuua 4441 uuuauaucag a--------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------a auaauAUGAA UUAA-UGC-G AAGUUGAAAU ACAGUUAC-C GUA-GG(GGA 4621 -A)CCU-GC- GGUGGGCUUA ---------| uaaauaucuu aaauauucuu aca------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.W.satur 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Williopsis saturnus var. mrakii. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Williopsis saturnus var. mrakii. ORGANISM Mitochondrion Williopsis saturnus var. mrakii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X71392 ID MIWMTRNAV standard; DNA; ORG; 3709 BP. XX AC X71392; XX DT 16-APR-1993 (Rel. 35, Created) DT 16-APR-1993 (Rel. 35, Last updated, Version 2) XX DE W.mrakii mitochondrial DNA for tRNA-Val, 15S rRNA and 21S rRNA DE (partial) XX KW 15S ribosomal RNA; 21S ribosomal RNA; ribosomal RNA; KW small subunit ribosomal RNA; transfer RNA; transfer RNA-Val. XX OS Williopsis mrakii OC Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; OC Endomycetales; Saccharomycetaceae. XX OG Mitochondrion XX RN [1] RP 1-3709 RA Drissi R.; RT ; RL Submitted (07-APR-1993) on tape to the EMBL Data Library by: RL R. Drissi, Institut Curie Biologie, Bat 110 Centre Universitaire, RL 91405 Orsay Cedex 13, FRANCE XX RN [2] RP 1-3709 RA Drissi R., Sor F., Fukuhara H.; RT "DNA sequences coding for the ribosomal small subunit RNA and Vayl RT tRNA from the lineard mitochondrial genome of Williopsis mrakii"; RL Unpublished. XX FH Key Location/Qualifiers FH FT source 1..3709 FT /organism="Williopsis mrakii" FT /mitochondrion FT /strain="CBS 1707" FT promoter 42..50 FT /note="15S rRNA promoter" FT rRNA 50..1666 FT /product="15S ribosomal RNA" FT tRNA 1822..1895 FT /product="tRNA-Val" FT promoter 1955..1963 FT /note="21S rRNA promoter" FT rRNA 1963..>3709 FT /product="21S ribosomal RNA" XX SQ Sequence 3709 BP; 1530 A; 324 C; 497 G; 1358 T; 0 other; BASE COUNT 644 a 152 c 225 g 596 t 3596 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 -----aaaua uaauaauaau uaaauuauua uuuuagagga auuauaaaau auagaGAAUA 661 (UGA-)U-GU U|AGUUC-AG ACUUAAUACU -A-UAUA-GA |GA-CA--UA ACAC-A-UGC 721 -AAAUCA-AA CGauu|auu- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ----uaauug auauauaauu auauaauauu aauauuauau aauucaaaua au-------- 901 ---------- ---------- ---------- ---------- ---------- ----aaua|a 961 uua-A-GU|G GUGUAUCCGU GAGUAA---u a|AAU-AGAA --UUa--GAA CUAAU-AUAU 1021 CUUu------ -------(ua aa-u)----- ---------g AGGAAUA--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---aua(aau 1141 -----)aaa- ----gauaau uau(uaau)u aauuauu--- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GAUA UUAGUCAAG- --CUAUU-ag |--------- -CAGUAUA-- 1321 -GGUAUUAUG UA-GG(AUAA UAGC------ ---------- ---------- ------)CAU 1381 ACAUA|---- GCCGA--UAA U|CUGUA-GC AA|--UUAAU (UAAC--)GU UAUAAUUGU| 1441 CACGUC-GAU UA(UCAAA-- UA-)CAAUCG A|UAUCU--( au-a-)--UG AUA----C-A 1501 GCA|GUG-AG GAAUAUUGGG C-UUAGAUC( ---------- ----GAAA)G AUUGA-CCC| 1561 A|-GUUA-U- CU-AUA---- -AUAAUGAAA --Uuuc-aau ---------- -uuu------ 1621 ---------- -cuuau--uU -AUU|uuuuu uuaaaauuua aauauaguaa agaaaaaauu 1681 guuauaaauu aaaguuauag acuagcgaga auaaugauag uagcuaucau cagauuauga 1741 ugaauauaaa auuuauuuuu uuauaugucg ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ------auUA GUACC|-GAU 1921 -UAA-G--AU AUGU-G(-CC AGCAUUC-GC -GGU-UA)-U ACAUAG|--- -GGU-GCA-- 1981 AGUAU-UAGU UAU--AUU-- ---GGU|UUA AAGGAUCCGU -AGAAUU|UA UAUAU----- 2041 ---------- ---------- -------(-- ----aau)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- -------a|u AUAUAUA-UA 2281 G-----AGUU -AA-CA-aua gUAAUA--AA -----|UGAA UUAUAA-UAG ---UAAUG(A 2341 UGAAA)UAU- UAU---GAUA AUUA-UAG-G ACA------- ----GUCAAA -AUU(-GAAA 2401 -)AU|A---- ----UUUAUU A-UAUGU-U- AA---CUGAC AUU--GAGGG AUGAA-GGCU 2461 A-AAU---UA AUGAAAUGG( AUUCGAUAC) CCAA-GUAA| -UUUU-AGC- AGUAAA-CUA 2521 U--GAGU-AC |UG|AAUAUU UAU---(-aa uaa------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)----AU AAAUAUU-UA AGA(GAAA)U CA-AUAGUAU 2701 U-C|--C|AC C-AGGA-GAG UAUAAUA(-- -ACUC--)AA UGG--AAACC CAAUACAA-U 2761 AG|ACGGUU- AUAAUC---A AUAGCAGU|G GAGUAUGU-U |AUUUAA-UU UG(AUAAUCC 2821 C--------- ----)CAAAA A-UC-UUACC ACAUCUUGAA uauuaucuuu aa-------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- --uga-uauu a--C---AGG CGU-UA|CA- 3121 |UA|-GU--U |G------UC UU-CA|G-UU CGU-|GCU(G --UGA)AGUU UAAGG(UUA- 3181 GUU)CCG-U- A-AACGAACG CAU-UCCUGU au---aaaua uauuaa---- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-uauuu aua-auuc-- u-uuauu-ua (aaug-c)au aaa---gag- 3781 -----AAU-A GGUUUA-AGA C-AAAUCAUU A|UGAC|CCU AAU------- ---------G 3841 U-U-GU-GGG CU-AUA--GA -CGUACUAUA AA--auaaua u-auaa-aau uu--aauua- 3901 aaua-gugau auuuaaugau aaauacaacu uauuaaaaua uguu------ ---------- 3961 ---------- ---------- ---------- --------au --------au auu-aauaua 4021 uaauuu---u ag---UAUGA --AUUAU-AU C-C(------ ---------- ---------- 4081 ---------- ---------- UGUAAu-uc) G-GA-U--AU -A--UGAAA- -CAAGAAUUG 4141 C-U--AGUAA UCUGUAAU(- UAAGU-AU-- --)AUUACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--UAUU 4261 AAUUGU-UU- CGCACUAA-U -UACUCGUCA C-GCG---UA Aau-uaaaau aaauaacaaa 4321 aauaaa---- ---------- ---------- ---------- ---------< uauuauauu- 4381 auuaa-ucuu uuauuauuua auaauugu-- uuug-auuuu uua-a----- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ------uuuu 4561 auuuaguuau cuguuuuaua UUAU-UGC-G AAGUCGAAAU ACAGUUAC-U GUA-GG(GGA 4621 -A)CCU-GC- AGUGGGCUAU ---------| auuuaaucuu uauucauauu caca~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (6)-MITOSP 5213 bp RNA RNA 25-JAN-1994 DEFINITION MITOSPORIC ASCOMYCOTA. ACCESSION No information KEYWORDS No information. SOURCE MITOSPORIC ASCOMYCOTA. ORGANISM MITOSPORIC ASCOMYCOTA. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.B.bassi 5213 bp RNA RNA 23-MAR-1997 DEFINITION Mitochondrion Beauveria bassiana.; . ACCESSION U91338 KEYWORDS . SOURCE Mitochondrion Beauveria bassiana. ORGANISM Mitochondrion Beauveria bassiana. REFERENCE 1 (bases 1 to 1561) AUTHORS Hegedus,D.D., Pfeifer,T.A., Mulyk,D.S. and Khachatourians,G.G . TITLE Nucleotide sequence and secondary structure prediction of the Beauveria bassiana mitochondrial small ribosomal RNA JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1561) AUTHORS Hegedus,D.D., Pfeifer,T.A., Mulyk,D.S. and Khachatourians, G.G. TITLE Direct Submission JOURNAL Submitted (26-FEB-1997) Zoology, University of British Columbia, 6270 University Blvd., Vancouver, BC V6T 1Z4, Canada STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U91338 BASE COUNT 528 a 216 c 326 g 483 t 3660 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ------aaua uaguuGAGU- 661 (UUG-)U-GA U|-GCUC-UG AUUGAACACU -G--UCA-AG |UG-CU--UG ACAC-A-UGC 721 -UAAUCG-AA CGuuu|uaau uaagagu--- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ----gguuua gcuuaucaug uaaguaauag gccu------ ---------- ---------- 901 ---------- ---------- ---------- ---------- -cnccucuuc auaauuaa|a 961 a---A-GU|G GUGUACAGGU GAGUAUaaua a|uau-uuau -gcc---GNC CUUAG-AGUG 1021 AAGA------ -------(ua aa-u)----- ---------U CUUCAUA--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- --uaau(aaa 1141 ggg--)auua ---------- agu(auu-)g gg-------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- -----nG-nU UAAGAggau- gauaaauauu |--------u uCGGGAUA-- 1321 -GGUAGUAGU GA-AG(GUUA UGU------- ---------- ---------- ------)CUU 1381 CACUA|---- GCCuu-aacU C|UCGUA-GU CG|--AAGCU (GAAA--)GG UUGAUCGAC| 1441 CACAUU-GGG UC(UGAAA-- AA-)AGCCCA A|UGCA---( ag-uu)---A GUA----C-A 1501 GCA|GUG-AG -AAUAUUGGU C-AAUGGCC( ---------- ----UAAC)G GCUGA-ACU| 1561 G|-GCAA-C- UU-GGA---- -GAAGUGUUA -agucuuuau u-----unn- guauu----- 1621 ---------- guaaua---g -acu-acguu uuaauaagcu au-------- ------augu 1681 aaauauagug cuuaggcgga gcuuauuaac acacaaauua aagauuaaau uaguauugaa 1741 ugaaacuuug uuuauauauc gauaa----- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ugacgauau- auauauua-U GUCUU|-GAC 1921 -CAA-U---U ACGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGUAA|--- -GAG-ACU-- 1981 AGUGU-UAUU CAU--cuuaa uuaGGU|NUA AAGGGUACUC -A-AACG|Gu cuguu----- 2041 ---------- ---------- -------(-- uugcacc)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- aa-agaC-UA 2281 G-----AGUU -AU-AU--ag aAGAAG--GU -----|AGUA CCUUAA-GUG ---UAGAG(A 2341 UAAAA)UUU- ugu---UAUA CAGG-AGG-G ACUu------ ----AGAAAA -GGC(-GUAG 2401 -)NC|A---- ----ACCUUC U-AAGUAAU- AA---CUGAC GUU--GAAGG ACGAA-GGCA 2461 U-AGG---UC ACGAACAGG( ACUAGUAAC) CCAA-GUAG| -UCUU-UGC- AGUCAA-UGA 2521 U--GAAU-GC |CA|UAGGUU AGA---(-ua aaaau----- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)----UU AAGUCUA-UA AAU(GAAA)A UG-UAAGCAU 2701 U-U|--C|AC C-UCAA-GAG UAAUGUG(-- -GCAA--)CG CAG--GAACU GAAAUCAC-U 2761 AG|ACCGUU- UCUGAC---A CCAGUAGU|G AAGUAUGU-U |GUUUAA-UU CG(AUGAUCC 2821 A--------- ----)CGAAA A-ACCUUACC ACAAUUUGUa uau------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -------uuu a--C---AGG AGU-UG|CA- 3121 |CG|-GC--U |G------UC UU-CA|G-UU GAU-|GUU(G --UGA)AACU -GUGG(UU-- 3181 --U)CCA-U- G-AAUUAACG CAA-UCCCUU -----gcuu- uau------- -----(---- 3241 --)<-uuuug uucguacaaa cuaaggcuua guuaaagcua uauuuaguua c--------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|-----u aua-aagcau uugaccc-ua (-uaa-u)uu gggaagaaa- 3781 -----AAA-G GGAGUA-AGA C-AAGUCAUC A|UGGC|CUU AAU------- ---------A 3841 C-U-GU-GGG CU-AUA--GA -CGUGCCACA UA--agccua u-acaa-aga ga--ugcga- 3901 aaau------ ---------- ---------- ---------- ---------- ---------- 3961 ---------- ------(--G UGA--)auuc -uagcaaauc ucaa---aau agg-aaauaa 4021 a--------- -----AAGGA --AUUCU-AG U-C(------ ---------- ---------- 4081 ---------- ---------- UGUUUa-ac) G-AC-U--AU -A--UGAAU- -AAGUAAUUA 4141 C-U--AGUAA U-CGUGAA(- UAAGG-AU-- --)GUCACGG A-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--U--u 4261 aUGGGA-UU- GGUACUAA-C -CACUCGUC- G-AUG--CUG AAA-GGAgu- ---------- 4321 ---------- ---------- ---------- ---------- ---------< uuauacaauu 4381 aaguu-ugcu cuuuuauuag uaaaaaaaua aaa(uaa-)u uagauuuugu auauauuauu 4441 auaaaauucu ucgcauguau a--------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---gCUCUAA UUAG-UGU-U AAGUCGAAAU ACGGUUCG-C GUA-GU(GGA 4621 -A)GUU-GC- GCGGGAuauu aag------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (5)-BASIDI 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.A.aeger 5213 bp RNA RNA 12-JUN-1996 DEFINITION Mitochondrion Agrocybe aegerita.; . ACCESSION U54637 KEYWORDS . SOURCE Mitochondrion Agrocybe aegerita. ORGANISM Mitochondrion Agrocybe aegerita. REFERENCE 1 (bases 1 to 3948) AUTHORS Gonzalez,P., Barroso,G. and Labarere,J. TITLE aegerita Complete sequence and secondary structure of the mitochondrial small subunit ribosomal RNA and evidence of its group-IC2 intron from the cultivated basidiomycete Agrocybe JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 3948) AUTHORS Labarere,J. TITLE Direct Submission JOURNAL Submitted (10-APR-1996) Jacques Labarere, Molecular Genetics and Improvement of Edible Mushrooms, Bordeaux II University, I.N.R.A. CRA de Bordeaux BP 81, Villenave d'Ornon Cedex 33883, France STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U54637 BASE COUNT 672 a 251 c 335 g 642 t 3313 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ------cuuu uggaaGAAUU 661 (UAA-)U-UU U|GGUUC-UG AUUGAACGUU -U-UUCA-GU |AG-UU-UUA AGAC-A-UGC 721 -Aaaucg--u uauuu|u--- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)agaaaaaa 841 guauagaa-- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- --------|- 961 ----u-aa|g guguaaaggu gaguaa--UG A|UAA-AUAa --ga---uac cuuaucaguc 1021 uuuu------ ---------- cg-aa---au agaggauacu uauauaauau aaauuauaug 1081 cuaauauagc uaaauuauga agaaaggaau uuuucu---- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------acua uaagagucg- --auuua-uu |--------- -UUGUUUAau 1321 uGGUAGUUGG UA-GG(GUAA AGG------- ---------- ---------- ------)CCU 1381 ACCAA|---- GCCUA--CGA U|CAAUA-GC CA|--AGUUU (GAAA--)GA ACAAAUGGC| 1441 CACAUU-GGG AA(UGAAA-- A--)GCCCCA A|AUUGC--( -uuaa)--GC AAU----C-U 1501 GCA|GUC-AA GAAUAUUAGU C-AAUGCUC( ---------- ----GCAA)G AGUGA-ACU| 1561 A|-GCUA-A- CU-GAA---- -aucacaaaa ucac------ (-------uu aauc------ 1621 --------)- -gugguuauu -gug|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ------auaa cguaagggaa 1801 aaaaaugaua uuaccuuacu au-------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- --------AA GUGUU|-GUC 1921 -UAA-AuuAC UGGU-G(-CC AGAAGAC-UC -GGU-AA)-C ACCAGA|--- -AAC-GCG-- 1981 AACGU-UAGU CGU--CUUAA ACAGGC|GUA AAGGGUAAGU -A-GGCU|gc uuuaaa--uu 2041 |uucua--uu uuuaaacuaa auuuacu(-- --uuua-)ag uaaauaagcu cuaaauuuaa 2101 uaaauaaaaa uaaaauuuuc aacucgcaau ccucaggauu uuuaugagaa aauuaaauaa 2161 auuugaccug uaauuuuauu aagaucagua aaaauagaau ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------aa|a uuaaagc-UA 2281 G-----AAUC -Au-aaug-g -agaua--aa c-caa|AUAA UACUUAUGUG ---UAAGG(A 2341 UGAUA)UCU- AAA---GAUA CUAA-GUA-G AAU------- ----ACUAAU -GGU(-GAAA 2401 -)AC|UU--- ----uuuauc uaguaa--u- ga---uuGAC GCUc-GAGGA ACGAA-AGUG 2461 --GAA---UA GGGAAUAGG( AUUAGAUAC) CCACgUUAC| -CUCU-CAC- CGUCAA-CGA 2521 U--GAAU-GG |UA|guuauu aguuua(--- ---------- ---------- ----aua--- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-uaaau uaguaac-GA UGU(UAAC)G CGAUAACCAU 2701 U-C|--C|GC C-UUGA-GAG UACGGUU(-- -GCAA--)AA CUG--AAACC AAAAAAAU-U 2761 AG|UCGGUC- UCGGAG--CA AACGAAGU|G AAGCAUGU-U |AUUUAA-UA CG(AAAGUAC 2821 G--------- ----)CGUAA A-AUCUUACC AGUUCUUG-C AUA------- ---------- 2881 ---------- ---------- ---------- --------------U A--C---AGG UGU-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-UC CGU-|AUU(G --UGA)AAAG UGAGG(UUA- 3181 ACU)CCA-C- U-AACGGACG AAA-UCCCUG -----UUGUU AAuuu----- -----(auac 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ uua-acuauu gaugauu-au (uaaa-u)au uuu-ca---- 3781 -----UUU-G GGGCUA-AGA C-AAGUCGUU A|UGGC|CCU CAU------- ---------G 3841 A-A-CU-GGG CU+AUA--GA -CGUGCUGCA AA--AACUUU U-ACAA-UGU GA--CGCAA- 3901 AAcu(--- -----)gguu -uaGCUAAUC AAU--AAAAA AAG-UUAuuu 4021 uuauuauuuu uaua-AACGG --AUUGU-UG C-C(------ ---------- ---------- 4081 ---------- ---------- UGGAAu-uc) G-GC-A--AC -A--UGAAG- -AAGGCCUUU 4141 C-G--AGUAA U-CGUUGA(- UUAGU-AUU- --)GCAACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -gau--ugaa 4261 -uccgu-GA- UGAACUAA-C -UGUCUGUCG C-UGG--GGA GGA-GUUCcg auugggccaa 4321 auccccuuua auaaau-aug aag------- ---------- -(------)< ---------- 4381 ---aa-caaa aguauacacu auauuaaauu uauauuaaaa auauuuguua aauauuuuuc 4441 uaauuau(uu uuaauu)aag uguaguuauu cuuauuuguu acuuauguaa cuuuauauag 4501 ugcaguuuaa cucuuuuguu -->------- ---------- -----gagau uuauuaauau 4561 cgauuaaccc uuCUGAGUAA CAUU-UCA-A AAGUCAUAGC AAGGUAGCUU GUA-CU(GGA 4621 -A)AGUCGC- UGCUGGAAAA UAUA-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.sinus 5213 bp RNA RNA 11-JAN-191 DEFINITION Suillus sinuspaulianus. ACCESSION No information KEYWORDS No information. SOURCE Suillus sinuspaulianus. ORGANISM Suillus sinuspaulianus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Thesis; Yunan Li, University of California at Berkeley BASE COUNT 1006 a 300 c 408 g 958 t 2541 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|gagcu cucauuuaaa aaauuugggg 541 cugaaauaau aaaaaaaaua aauagauaaa uauuaaaaau auaaaagaga uauuaaauau 601 ugcauuaaag caaauaaaau acgacaauaa aaaaaaauug uuuaauaaaa agaaaGAAUU 661 (UAA-)U-UU U|GGUUC-CG AUUGAACGUU -U-UUCA-GU |AG-UU-UUA AGAC-A-UGC 721 -AAAUCG--U UAuuu|c--- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)ugaaagua 841 aauuuuuauu uaaaauuau( auaa)auaau aacuaaauaa aaaugauaau au-------- 901 ---------- ---------- ---------- ---------- ---------- -------g|a 961 a--au-AA|G GUGUAGAGGU GAg-ga--UA G|UAA-AUaa --ga---uac ccugu-aguc 1021 uuca------ -------(ua ga-u)----- ---------a gaagaua--- -uuauucuaa 1081 guaaauuuuu uaaauuuauu acuaguauuu uuaaauuaau uugcuugcau uauauaaaau 1141 uauaauuguu uuucauuaau ugcaaaaauu uaaauaaaaa ugacuaaagc aaaaaaauua 1201 uuuaaauaac aauaauguaa aauaaaugaa uaaaauaaaa aagcuauuuu uauuaaaaaa 1261 aggaaauuuu cu----GCUA UAGGAUUCU- --AUUUA-UU |--------- -UUGAUUA-- 1321 -GGUAGUUGG UAuGG(GUAA AGG------- ---------- ---------- ------)CCU 1381 ACCAA|---- GCCGA--CAA U|CAAUA-GC CA|--uGCUU (GACA--)GA GCAGAUGGC| 1441 CACAUU-GGG AA(UGaaa-- u--)CUCCCA A|GUAGU--( uuuau)--AC UAC----C-A 1501 GCA|GUC-AA GAAUAUUAGU C-AAUGCUC( ---------- ----GUAA)G AGUGA-ACU| 1561 A|-GCUA-A- CU-GAA---- -aucgcaaau ---------- (-------gu guc------- 1621 --------)- -----a-uuu -gug|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ------auaa aguaagagaa 1801 aauuaugaua uuaucuuacu ac-------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- --------UA GUGCU|-GUC 1921 -CAA-A--AC UGGU-G(-CC AGAAGAC-UC -GGU-AA)-G GCCAGA|--- -GGC-GCA-- 1981 AACGU-UAGU CGU--CCUAA UCAGGC|GUA AAGGGUUUGU -A-GGCU|gc uuugaa--ag 2041 |ucuua--uu auua------ -uaau--(-- --agcu-)-- auua------ ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------a augauaagau ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------ga|a uugaagc-UA 2281 G-----AAUC -Ua-auag-a -gggua--aa a-caa|AUAA UAUUUA-AAG ---UAAGG(A 2341 UUAAA)UCU- CAA---GAGU UUAG-AUG-G AAU------- ----ACUAAC -GGU(-UAAA 2401 -)GC|U---- ----uuuauc uaucuac-A- GA---UUGAC GCU--GAGAA ACGAA-AGGG 2461 A-GGU---AA GGAAACAGG( AUUAGAUAC) CCAA-CUAC| -UGCU-CCC- UGUCAA-CGA 2521 U--GAAU-GG |UG|GUUGCU AGUuau(aac uacuuuaagu aaauauuuua uauuauauaa 2581 gauaaaaua- aguaguuaaa ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-augAC UGGUAGC-GA UGC(UAAC)G CGUUAACCAU 2701 U-C|--C|GC C-UUGU-GAG UACGACU(-- -GCAA--)AG UUG--AAAAC AAAAAAAU-U 2761 AG|UCGGUU- UCGAAG--CA AACGAAGU|G AAGCAUGU-U |AUUUAA-UA CG(AUAAUCC 2821 G--------- ----)CGUAA A-AUCUUACC AGUUCUUG-C AUA------- ---------- 2881 ---------- ---------- ---------- --------------U A--C---AGG UGU-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-UC CGU-|gcu(G --UGA)gaaG UUUGG(UUA- 3181 AAU)CCG-C- U-AACGGACA AAA-UCCCUG -----UUGUU AAuuu----- -----(auac 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ UUA-ACAAUu aaugaua-cu (gaua-g)ag cau-ca---- 3781 -----UUU-G GGGCGA-AGA C-AAGUCGUU A|UGGC|CCU CAU------- ---------G 3841 A-A-CU-GGG CU-AUA--GA -CGUGCCACA AA--GACUUU A-ACAA-AGU GA--AGCGA- 3901 Uacu(--- -----)ggaG -GAGCUAAUC AUU--AAAAA AAG-UCAAAC 4021 uauuaa---a uaua-GUCGG --AUUGU-CA U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-uc) G-GG-G--AC -A--UGAAG- -AAGGAAUUU 4141 C-G--AGUAA U-CGUUGA(- UCACU-AC-- --)GCAACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCU--AGCA 4261 -UUCGG-AA- UGAACUAA-C -CGUCUGUCG C-UGG--GAA GGA-GCUUAA cuugguggaa 4321 acuggaauga aguuuu-aac uuuuacaaa- aauuaaa--- -(------)< -uuuuuauu- 4381 uagua-ucuu ugauauuuua uuuuuaau-- uuau-uaguu uuu-uuuucg uuagauuuuu 4441 uuuaauu(ua uugcuu)aau uaaaaaguau uauuuuuguu uaaagaau-a aauacuuguc 4501 uaacaauguu aaauuuaaaa -->------- ----cgau-- uuuguuaagc aaauuagcuc 4561 uaguuaaacc aaUUAAGUAA CAUC-UCA-A AAGUCAUAGC AAGGUAGC-C GUA-CU(GGA 4621 -A)AGU-GC- UGCUGUAAAA UAAA-----| ACGAAUAGUU UAUAACCCCC CUAUAAACUA 4681 UCAUUUUUUG UAUUAAUUAC CUUUUUAAUA CAAUUUUUUA AAUUAUAUAC UUAUUAAUAC 4741 UUUACGUCCU AAUAUACAUA UAUUUUUUUU AACAAAUUAU CAAUCCUUAU UAAUUUAAAU 4801 GUAAAAUAUU UAUUUAUUUU AUAAUUUUUG UUUUUUAUUA UUUUUAUAUU AUUUUUAUAU 4861 UAUUUUUAAG GGGUUAGCUG AGUGGUUUAG CAGUAAAUUU ACACUUUACA GACAGGGUUU 4921 CGAUUACUCU ACUCCUUAUU UUUUGUUAAG AUUAAAGUUA UAUCUUUAAA UAUGAGGUAU 4981 AAUAUCUAAA CUAAUUUAUU UAUUAUUUUU AAAUUUAAUU AUAUAAAUAU UUAGGAAAAA 5041 UAAUUUAUUU AAUAUAAAAA GUAUAAUUUU UAUGAUUAAA UUUUAGUAUA AAUUAUUUUA 5101 UCACAAAAUA UAAUAUUUUA AUUUAUAUGU AUUUUCUCAU GAAACUACAG AGUUAAUUAC 5161 UGGAAUGUUA UUAAGUGAUG GUAAUUUAGA CUUAUCAAAU UCUGCAG~|| ||| // LOCUS (5)-CHYTRI 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.All.mac 5213 bp RNA RNA 11-JAN-191 DEFINITION Allomyces macrogynus. ACCESSION No information KEYWORDS No information. SOURCE Allomyces macrogynus. ORGANISM Allomyces macrogynus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U23935 U41288(complete mt. genomic seq.) LOCUS AMU23935 1723 bp DNA PLN 20-APR-1995 DEFINITION Allomyces macrogynus small subunit ribosomal RNA (rns) gene, mitochondrial gene encoding mitochondrial rRNA subunit, complete sequence. ACCESSION U23935 KEYWORDS . SOURCE Allomyces macrogynus. ORGANISM Mitochondrion Allomyces macrogynus Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group; Eumycota; Chytridomycotina; Chytridiomycetes; Blastocladiales; Blastocladiaceae; Allomyces. REFERENCE 1 (bases 1 to 1723) AUTHORS Paquin,B., Forget,L., Roewer,I. and Lang,B. TITLE Molecular phylogeny of Allomyces macrogynus: congruency between nuclear ribosomal RNA- and mitochondrial protein-based trees JOURNAL J. Mol. Evol. (1995) In press REFERENCE 2 (bases 1 to 1723) AUTHORS Lang,B. TITLE Direct Submission JOURNAL Submitted (31-MAR-1995) B. Franz Lang, Biochimie, Universite de Montreal, C.P. 6128, succ. Centre-Ville, Montreal, Quebec H3C 3J7, Canada COMMENT NCBI gi: 777406 FEATURES Location/Qualifiers source 1..1723 /mitochondrion /strain="Allomyces macrogynus his1 3-35 (35oC)" /organism="Allomyces macrogynus" /cell_line="ATCC 46923" rRNA 1..1723 /gene="rns" /note="SSU rRNA" /product="small subunit ribosomal RNA" BASE COUNT 547 a 305 c 417 g 454 t ORIGIN BASE COUNT 547 a 305 c 417 g 454 t 3490 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------uua auuuuGAGUU 661 (UGA-)U-CU U|GGCUC-UG AAUGAACGCU -A-GCUA-UU |GA-CU--UA ACAC-A-UGC 721 -UAGUC-A-G AAu--|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuu u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- --------|- 961 ---aU-UC|G GCGUAAAGGU GAGUAA--au c|uag-gaga --aa---aac caaug-aaGU 1021 GAGCCCC--- ---C---(UU CG--)---G- -------GGG UUUUACA-uu uucguuugga 1081 aaaacuaccu uauaaauaga g--------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 --------ua cggaaacgug uacguauga- -aucauguaa ca-------- -GGGUUAA-- 1321 -auc--ucug uaugguuaau acguuaugaa cucguuuaua agaugugccu agaaaggauu 1381 agaga|---- aaucga-UGA U|CCUU-AGC UG|---AUCU (GAAA--)GG AUGGUCAGU| 1441 CACAGU-GGA AC(UGAA-AU AA-)GGACCA C|ACAAUc-( agag-)-uAU UGG----C-A 1501 GCA|GUG-GG GAAUCUUGGA C-AAUCAGC( ---------- --caaugc)G CUGGA-UCC| 1561 A|-GUCA-A- AU-AGC---- -AUGGAGAAA --AAgc-aa- (--------- -ugc------ 1621 --------)- uuga----UC -UCC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -----UAAAG GAAAUGAGGA UAA------- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- UGACUGAAAU UUCCUGAAUA GUCCC|-GGC 1921 -AAA-U---C UCGU-G(-CC AGCAGCC-GC -GGU-AA)-U ACGAGA|--- -GGG-GCG-- 1981 AGCG-UGAGU CCU--AAUUA UUCGGC|GUA AAGAGUAAA- -AAGGCG|gu aaug------ 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- -gaaggcauc cccugcccgg 2221 gggugucucc uguaauacau auacggucuu uuggucc--- -gugugag|a uguaaac-u- 2281 ------AGAG -UAAAAUAGA -GGAGA--GU -----|AGAA UUGAAA-GUG ---UAAGG(A 2341 UGAAA)UCU- AGA---AAUA UUUU-CAG-G AAU------- ----AUCAAU -AGC(-GAAG 2401 -)GC|A---- ----ACUCUC U-UGGUU-AU UA---CUGAC GCU--GAAUU ACGAA-AGUG 2461 U-GGG---GA GCAAAUCAG( AUUAGAGAC) CUGA-GUAG| -UCCA-CAC- CCUAAA-CGA 2521 U--GAA-UGU |UC|GAAGAG GAU---(-AA UA-------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)----AU CCCCUUC-CU ACC(UAAC)G GGUUAAACAU 2701 U-C|--C|GC C-UGAG-GAG UAAGAUC(-- -GCAA--)GA UUG--AAACU CAAAAGAU-U 2761 AG|UCGGUC- UCUCAC---A CCAGCAGU|G AAGCAUGA-A |GUUUAA-UU UG(AUGAUAC 2821 G--------- ----)CAAAG A-ACCUUACC UAUCUUUGAC A--------- ---------- 2881 (-------au u-u)------ ---------- -------<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->-------- ---C---AGG CGU-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-UU CGU-|GUU(G --UGA)AACG U----(-u-u 3181 uau)------ ---ACGAACA AAA-CCCCAG ---------- ---------- ---------- 3241 ------ ---|------ --------GU -CAGAGAcCA (ACAU-U)UG UCU-UUUGAA 3781 U----UCA-G GGACUA-CGU C-AAGUCAUU A|UGAC|CCA UAU------- ---------A 3841 G-A-UA-GGG CU-AAA--UU -CGUGCCACU AG--AAGAAA U-ACAA-AGG GA--AACAA- 3901 Uaga<----- -----ggaua auugaacucc guuga----- ---------- ---------- 3961 ---------- ----->(--- -----)acuG -GAGGAAAUC CCU--AAAAU UUC-UUagg- 4021 ---------- -----UUCAG --ACAGG-AC C-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-uc) A-GG-U--CC -U--CGAAG- -UAGGAAUUG 4141 C-U--AGUAA U-CGUGAA(- UCAGCCAC-- --)GUCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--AAUC 4261 -UGAGA-GA- UGAACUAA-C -CGUCCGUCA U-AGU--CUG GGA-AUCAAU Cug-guu-ug 4321 aaguaggaaa gagacc-aag aaauauca-a aaugg----- --------<- auugaaaa-a 4381 uc-cg-agca cacccguagg guguuuuc-- uaaa-ucucg guc-auggua ucgaaucaaa 4441 ccuc-gaaag ggguguaaga caucaacacc uucaaggcga cguaacacgu cgauuuuugg 4501 gcagauugau ggaugcuuag a>---ggauu guuuuga--a auaagcuuau cgucgauguu 4561 cuauuauuau uGAUUGGUGA CUGG-AUU-A AAGUCGUAGC AAGGUCGG-G UUA-CG(GG- 4621 AA)CGU-GG- UCCGGAAUGG UUAAAUGA-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (4)-METAZO 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (5)-EUMETA 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (6)-BILATE 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (7)-COELOM 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (8)-DEUTER 5213 bp RNA RNA 25-JAN-1994 DEFINITION DEUTEROSTOMIA. ACCESSION No information KEYWORDS No information. SOURCE DEUTEROSTOMIA. ORGANISM DEUTEROSTOMIA. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (9)-CHORDA 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (10)-CEPHA 5213 bp RNA RNA 25-JAN-1994 DEFINITION CEPHALOCHORDATA. ACCESSION No information KEYWORDS No information. SOURCE CEPHALOCHORDATA. ORGANISM CEPHALOCHORDATA. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.B.lance 5213 bp RNA RNA 03-JUL-1998 DEFINITION Mitochondrion Branchiostoma lanceolatum.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase 6 gene; ATPase 8 gene; COII gene; COIII gene; cytb gene; cytochrome b; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; tRNA-Ala gene; tRNA-Arg gene; tRNA-Asn gene; tRNA-Asp gene; tRNA-Cys gene; tRNA-Gln gene; tRNA-Glu gene; tRNA-Gly gene; tRNA-His gene; tRNA-Ile gene; tRNA-Leu gene; tRNA-Lys gene; tRNA-Met gene; tRNA-Phe gene; tRNA-Pro gene; tRNA-Ser gene; tRNA-Thr gene; tRNA-Trp gene; tRNA-Tyr gene; tRNA-Val gene. ACCESSION Y16474 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase 6 gene; ATPase 8 gene; COII gene; COIII gene; cytb gene; cytochrome b; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; tRNA-Ala gene; tRNA-Arg gene; tRNA-Asn gene; tRNA-Asp gene; tRNA-Cys gene; tRNA-Gln gene; tRNA-Glu gene; tRNA-Gly gene; tRNA-His gene; tRNA-Ile gene; tRNA-Leu gene; tRNA-Lys gene; tRNA-Met gene; tRNA-Phe gene; tRNA-Pro gene; tRNA-Ser gene; tRNA-Thr gene; tRNA-Trp gene; tRNA-Tyr gene; tRNA-Val gene. SOURCE Mitochondrion Branchiostoma lanceolatum. ORGANISM Mitochondrion Branchiostoma lanceolatum. REFERENCE 1 (bases 1 to 15076) AUTHORS Spruyt,N., Delarbre,C., Gachelin,G. and Laudet,V. TITLE mitochondrial genome : relations to vertebrates Complete sequence of the amphioxus (Branchiostoma lanceolatum) JOURNAL Nucleic Acids Res. 26, 3279-3285 (1998) STANDARD No information REFERENCE 2 (bases 1 to 15076) AUTHORS Laudet,V. TITLE Direct Submission JOURNAL Submitted (11-FEB-1998) V. Laudet, Ecole Normale Superieure de Lyon, CNRS UMR 49, 46 Allee d'Italie, 69364 Lyon Cedex 07, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y16474 Related sequence: Y09524. BASE COUNT 257 a 126 c 192 g 269 t 4369 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- -gugcAGAUU 661 (UGA-)U-UC U|GGUUU-CA AUU-AUAAAG -G-GGUU-AC |UG-AU--GA -UAC-A-UGC 721 -UAAU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cgu u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- AUGCACCAGU GAGAG---au g|ggg-gcgc --uaaga--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----guu uaag-)---- 1261 ---------- ---------- --uc--uuaa -cgcaaauug |--------- aAGCAUAU-- 1321 ---------- -----(uauu g--------- ---------- ---------- ------)--- 1381 -----|---- ---uu--auu u|GCUUU-GU --|------- (-cuu--)-- -------AC| 1441 CACU------ ---------- ---------- -|-cuau--( acag-)--ca ag-------A 1501 GCA|GUA-CU UAAUAUUGGU G-AAGGUGU( ---------- ----GAGA)G CAUGC-UUC| 1561 A|-GCA--G- UG-GUUauac u--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- agugu|-GGC 1921 -aaa-g---A UUGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACcuga---- -aca-aau-- 1981 AUUUA-UAAU A--------- -cacguaucu ------guaa -uuuucaua- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ------gcaa guuaag--au ------u--- --aucu-aa- -----gag-g 2341 ugaug--ucg uau---gcuu ucuc-guuug uaa------- ---------- ---------- 2401 ---------- ----aucuua aaag------ ---------u guu-aauuac ACGAA--GUA 2461 A-AGG---UA UAAACCAGG( AUUAGAGAC) CCUG-CUAU| -UCUU-UAC- ---------- 2521 ---------- |--|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- ---------- -----uaguu 2701 a-a|--C|AG U-UGGU-UAG UACGAAU(-- --uau--)GU UUG--AAAAC UAAAGAUU-U 2761 UG|GCAGUG- GGUAAUG-UC UAUUCAGA|G GAGUUUGU-U |CAGUAaaaU CG(AUAAUCC 2821 G--------- ----)CGAGG A--UCUUACU CUAUUUGGUG ---------- ---------- 2881 (--------- uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AAC UUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU AAU-|guc(a --uaa)ggg- -----(ugu- 3181 aa-)------ G-AAUUAGCU AAG-agau-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ggau--- 3781 ---------A UCUAAA-CGU C-AGGUCAGG G|UGUA|GUC AAU------- ---------A 3841 G-U-AG-AG- GU-UGG--AA -UGAAUUACA GU--uauu-- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- uag-caaua- 4021 ---------- ------CCGG --AUAUU-AC UcA(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) U-AG-U--AA -U--UGAAG- -UUGGAUUUG 4141 G-U--UGUAA A-UUUGUA(- UUAUG-AU-- --)GAUAUAU U-GAC----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ugu--agcg 4261 cUUAUC-UA- UGCACACA-C -CGCCCGUCA U-UUU--CCU g--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< --aaaucau- 4381 aa-------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- -AGG-AAA-G AAGUCGUAAC AAGGUAGG-G CAU-CC(GGA 4621 -A)GGA-UC- CCCUGGGGAA UUAUA----| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- -------~|| ||| // LOCUS (10)-VERTE 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (11)-AGNAT 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.Pet.mar 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Petromyzon marinus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Petromyzon marinus. ORGANISM Mitochondrion Petromyzon marinus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U11880 DEFINITION Petromyzon marinus mitochondrion, complete genome. SOURCE sea lamprey ORGANISM Mitochondrion Petromyzon marinus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Petromyzontiformes; Petromyzontidae; Petromyzon. REFERENCE 1 (bases 1 to 16201) AUTHORS Lee,W.-J. and Kocher,T.D. TITLE Complete sequence of a sea lamprey (Petromyzon marinus) mitochondrial genome: A unique gene order and significance for the evolution of mitochondrial genome structure JOURNAL Unpublished REFERENCE 2 (bases 1 to 16201) AUTHORS Lee,W.-J. TITLE Direct Submission JOURNAL Submitted (06-JUL-1994) Woo-Jai Lee, Zoology, University of New Hampshire, Spaulding Life Science Building, Durham, NH 03824, USA COMMENT NCBI gi: 515484 FEATURES Location/Qualifiers tRNA complement(1195..1265) /product="tRNA-Pro" /anticodon=(pos:1231..1233,aa:Pro) tRNA 1276..1343 /product="tRNA-Phe" /anticodon=(pos:1309..1311,aa:Phe) rRNA 1344..2243 /product="12S ribosomal RNA" tRNA 2244..2314 /product="tRNA-Val" /anticodon=(pos:2276..2278,aa:Val) rRNA 2315..3935 /product="16S ribosomal RNA" tRNA 3936..4009 /product="tRNA-Leu" /anticodon=(pos:3971..3973,aa:Leu) /note="UUR" tRNA 5003..5071 /product="tRNA-Ile" /anticodon=(pos:5033..5035,aa:Ile) tRNA complement(5074..5144) /product="tRNA-Gln" /anticodon=(pos:5110..5112,aa:Gln) tRNA 5145..5212 /product="tRNA-Met" /anticodon=(pos:5176..5178,aa:Met) tRNA 6256..6323 /product="tRNA-Trp" /anticodon=(pos:6285..6287,aa:Trp) tRNA complement(6325..6393) /product="tRNA-Ala" /anticodon=(pos:6334..6336,aa:Ala) tRNA complement(6397..6465) /product="tRNA-Asn" /anticodon=(pos:6434..6436,aa:Asn) tRNA complement(6467..6532) /product="tRNA-Cys" /anticodon=(pos:6502..6504,aa:Cys) tRNA complement(6538..6608) /product="tRNA-Tyr" /anticodon=(pos:6574..6576,aa:Tyr) tRNA complement(8154..8224) /product="tRNA-Ser" /anticodon=(pos:8189..8191,aa:Ser) /note="UCN" tRNA 8226..8294 /product="tRNA-Asp" /anticodon=(pos:8256..8258,aa:Asp) tRNA 8996..9061 /product="tRNA-Lys" /anticodon=(pos:9024..9026,aa:Lys) tRNA 10695..10764 /product="tRNA-Gly" /anticodon=(pos:10725..10727,aa:Gly) tRNA 11120..11185 /product="tRNA-Arg" /anticodon=(pos:11150..11152,aa:Arg) tRNA 12856..12924 /product="tRNA-His" /anticodon=(pos:12886..12888,aa:His) tRNA 12925..12994 /product="tRNA-Ser" /anticodon=(pos:12952..12954,aa:Ser) /note="AGY" tRNA 12995..13066 /product="tRNA-Leu" /anticodon=(pos:13028..13030,aa:Leu) /note="CUN" D-loop 15368..15858 tRNA 15859..15930 /product="tRNA-Thr" /anticodon=(pos:15891..15893,aa:Thr) tRNA complement(15932..16002) /product="tRNA-Glu" /anticodon=(pos:15968..15970,aa:Glu) repeat_region 16003..16201 source 1..16201 /organism="Petromyzon marinus" /dev_stage="adult" /mitochondrion CDS 1..1191 /note="NCBI gi: 515485" /product="cytochrome b" /codon_start=1 /translation="MSHQPSIIRKTHPLLSLGNSMLVDLPSPANISAWWNFGSLLSLC LILQIITGLILAMHYTANTELAFSSVMHICRDVNNGWLMRNLHANGASMFFICIYAHI GRGIYYGSYLYKETWNVGVILFALTAATAFVGYVLPWGQMSFWGATVITNLISAMPYV GNDIVVWLWGGFSVSNATLTRFFTFHFILPFILAAMTMIHIMFLHQTGSSNPMGINSN LDKIQFHPYFSFKDILGFVILLGILFMISLLAPNALGEPDNFIYANPLSTPPHIKPEW YFLFAYAILRSVPNKLGGVVALAAAIMILLIIPFTHTSKQRGMQFRPLAQITFWILIA DLALLTWLGGEPAEYPFILMTQIASTVYFMIFILVFPILGYLENKMLLMSKNTGKFNW KLVY" CDS 4014..4979 /note="NCBI gi: 515486" /product="NADH dehydrogenase subunit 1" /codon_start=1 /translation="MLIMLTSTLILVLMVLLAVAFLTMVERKTLGYMQLRKGPNVVGF MGLLQPIADGVKLFLKEPVWPLAASPILFIVAPIMALTLALSLWMLIPMPQSISTINI TLLVIMAISSLSVYAILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLCLVILTG SFSLQAFIYTQEHTWFLLSSWPLAAMWFVSTLAETNRTPFDLTEGESELVSGFNVEYA GGPFALFFLAEYSNILFMNTLTAIMFLGPLGSNNLNILPIINIMMKATPLIILFLWIR ASYPRFRYDQLMHLMWKNFLPLNLALFTLQLSLAVSFGGAGVPQM" CDS 5214..6257 /note="NCBI gi: 515487" /product="NADH dehydrogenase subunit 2" /codon_start=1 /translation="MLSPLIQSTLLMTLGLGTLVTFSSTSWILAWIGLEINTIAIIPL MAKTHHPRSIEATTKYFIAQSAGSATLLITACLTAWYSGNWAISPSNDPIILNAMTLA LMLKLGMAPMHFWLPEVMVGLDFITGMILATWQKLAPITLLIQIAQDQNNMFILIPAL LSVFVGGWGGLNQTQTRKILAYSSIAHMGWITSMAPFNPTITWLTTLIYCLITSATFI NLHILKANKITALTMNKHNQISQMLLLLLLLSLGGLPPLTGFINKLLASIELANQNLI IYLFMMMMGSLLSLFFYTRMCYLSIILSPPCSTTNLILWRVVSNKPMTLITMLSTNLF IMTPQLLAVFTLH" CDS 6610..8163 /note="GTG start codon. NCBI gi: 515488." /product="cytochrome oxidase subunit I" /codon_start=1 /translation="MTHIRWLFSTNHKDIGTLYLIFGAWAGMVGTALSILIRAELSQP GTLLGDDQIFNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMSF WLLPPSLLLLLASAGVEAGAGTGWTVYPPLAGNLAHTGASVDLTIFSLHLAGVSSILG AVNFITTIFNMKPPTMTQYQTPLFVWSVLITAVLLLLSLPVLAAAITMLLTDRNLNTS FFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVVAYYAGKKEPFGYMGMVWA MMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGKIVW HTPMLWALGFIFLFTVGGLTGIVLSNSSLDIILHDTYYVVAHFHYVLSMGAVFAIMAG FVHWFPLFTGYTLNETWAKAHFIIMFAGVNLTFFPQHFLGLAGMPRRYSDYPDAYTTW NIISSIGSTVSLIAVMLFMFILWEAFSAKRKAIATDLLNTNLEWLHGCPPPYHTYEEP AFVQTNFKK" CDS 8298..8987 /note="NCBI gi: 515489" /product="cytochrome oxidase subunit II" /codon_start=1 /translation="MAQQAQLGLQDAASPIMEELIHFHDHTLTVVFLISVLIFYLIIV MVTTTFMNKHSLDSQEVEIVWTVMPAIVLITIALPSLRILYLTDEISNPHLTIKAVGH QWYWSYEYTDYHQMEFDSYMIPTNELEPGGIRLLDVDHRIVVPMESPVRMLITSEDVI HSWTIPSLGTKVDAVPGRLNQATFITTRPGLFFGQCSEICGANHSFMPIALEAVPLSN FENWTTKVLAS" CDS 9064..9231 /note="NCBI gi: 515490" /product="ATPase 8" /codon_start=1 /translation="MPQLDPAPWFSMLTVSWLIIFLLIMPTILFYQPQNTISTKQVTK PKQSTWTWPWH" CDS 9222..9935 /note="NCBI gi: 515491" /product="ATPase 6" /codon_start=1 /translation="MTLDIFDQFTSPTMFGLPLAWLAMLAPSLMLVSQTPKFIKSRYH TLLTPILTSIAKQLFLPMNQQGHKWALICMASMMFILMINLLGLLPYTYTPTTQLSMN MGLAVPLWLATVLIGLQKKPTEALAHLLPEGTPAALIPMLIIIETISLFIRPIALGVR LTANLTAGHLLMQLVSMTTFVMIPVISISIITSLLLLLLTILELAVAVIQAYVFILLL TLYLQENVYVPPSSCMPHG" CDS 9901..10686 /note="NCBI gi: 515492" /product="cytochrome oxidase subunit III" /codon_start=1 /translation="MSHQAHAYHMVDPSPWPLTGAGAALLMTSGLAMWFHKNSCILMT LGLILMLLTMYQWWRDIVREGTFLGHHTSPVQQGLRYGMILFIISEVCFFAGFFWAFY HASLAPTPELGLTWPPTGINPLNPFEVPLLNTAVLLASGVSVTWAHHSITEKNRTETT QALTLTVLLGLYFTALQIMEYYETPFTMADGVYGSTFFVATGFHGLHVIIGSLFLLTC LLRHLQYHFTSKHHFGFEAAAWYWHFVDVVWLFLYISIYWWGS" CDS 10765..11115 /note="NCBI gi: 515493" /product="NADH dehydrogenase subunit 3" /codon_start=1 /translation="MNSFMVMIMLTLTLSSIMALLAFWLPIMKPDSEKLSPYECGFDP QGSARLPFSLRFFLVAILFLLFDLEIALLLPSPWATNISNPEFTLLWASLFVLLLTLG LIYEWLQGGLDWAE" CDS 11194..11484 /note="NCBI gi: 515494" /product="NADH dehydrogenase subunit 4L" /codon_start=1 /translation="MPTTLIFTSFFLALLGLSLQRKHLLSLLLTLESMALALYVSTAL WALNNTSLPIMAAPLIILTFSACEAGMGLSLMIATARTHNTDQLKALNLLKC" CDS 11478..12854 /note="NCBI gi: 515495" /product="NADH dehydrogenase subunit 4" /codon_start=1 /translation="MLKLIIPSIMLIPMTFLINKKSLLWTATTFFSFLIAALSTLTLN MDVAEHNSTNPLLSIDQFSCPLIMLSCWLLPLTIMGSQAHMKTEPITRQKTMISLLIL LQVLLCITFGASNLLMFYIAFETTLIPTLLIITRWGNQKERLTAGLYFLFYTLSASLP LLLALIMIQTHLNSLSIYIIPLSNLTLLLNTPWSETLWWIACFLAFLIKMPLYIFHLW LPKAHVEAPIAGSMILAAILLKLGGYGMIRMSSLFIPLTKDLAVPFMIIAMWGMIVTS SICLRQTDLKSMIAYSSVSHMGLVVAGIFTMTPWAWSGALAMMIAHGLVSSGLLCLAN ITYERTHTRSIFMNRGLKTLFPLMSFWWLMMTFANMALPPFPNFMAEILIITSLFNWS NWTILLLGLSMTLTALFSLNMLIMTQHEHPNKHAPVNPSTTREHLLMLMHMAPIILLI ANPSAIMI" CDS 13068..14864 /note="NCBI gi: 515496" /product="NADH dehydrogenase subunit 5" /codon_start=1 /translation="MNSHYLTLIMNSGALLTIIVLLPPIIMPKPSMILTTKLVKISMF ISLIPLTIYLNENMETTLTMKPWMDWALFNIALSFKIDKYTVIFTPIALMITWSIMEF SQWYMAKERHMDKFFKYLLLFLITMITFISANNLLQLFIGWEGVGIMSFLLISWWSGR TKANISALQAVAYNRIGDIGLMMSMVWMCSNTNSWDLQQITMLLSDQQYLIPTLGFLI AATGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGVFLLIRLHPLFQNYPLMLEM TLCLGAMTTICAALCATTQNDIKKIIAFSTSSQLGLMMVAVGLNHPHIAFLHMCTHAF FKAMLFLCSGSIIHNMNNEQDIRKFSCLNNNLPLTTTCMTIGSAALMGLPFLAGFFTK DLILEALNTSYTNAWALMVTLMAVTLTTAYSSRLIIMSASGTPRYLPLTPTHENNFIK NPLKRLAWGSLISGLILTSTLPPMKPQIFTMPTYIKTIALMMFIISLIISMELTNKKI NQTTFSFFTQLAFYPHIIHRLTSHLSLIWSQKLMTQVMDVSWLEKIGPKGLANHQLKP STTLTEAHHLNSATLPLMAFALTLITLSLTAR" CDS complement(14849..15367) /note="NCBI gi: 515497" /product="NADH dehydrogenase subunit 6" /codon_start=1 /translation="MLSLVLCFFVMFLLGVAVVVLSPSPYFSALGLVFVAVSGCFIVL YHGGTFLSLVLVLLYLGGMMVVFVYSAALAADPYPEVLGGRVIWFFVICVLCICFAGY MSFNDFFLDVSVACEGADYTGGIFGAEWLGVTTFYEVGLILVLAGWALLVCLFSVLVV VRGVNRGALRAV" BASE COUNT 301 a 234 c 168 g 197 t 4313 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGAU 661 (UAG-)U-UC C|AGCCU-UA AUA-UCAACU ---AUAU-AU |GAaau--ua -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACUCCCGU GAGGA--cCU C|CUU-Uaa- --cu-au--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----aa ac---)---- 1261 ---------- ---------- --au--aa-- --aAAAGAGA |--------- uGGUAUCA-- 1321 -GGCuc-ac- -----(aaaa a--------- ---------- ---------- ------)--- 1381 --guc|---A GCCCA--CAA C|ACCUA-gc --|------- (--ca--)-- -------cC| 1441 CACA------ ---------- ---------- -|-CCCU--( CAAG-)--GG UAcu---C-A 1501 GCA|GUG-AU AAACCUUAAG C-AAUGGGC( ---------- ----GCAA)G CCCGA-CUA| 1561 A|-GUU--A- CA-UAUuuua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCU|-GGU 1921 -AAA-C---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAGG|--- -AGC-UCA-- 1981 AGCUG-AUAU C--------- ucCGGC|acA AAGCGUGAUU -A-aaa---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --uauuuagc -uuaauuaau acuaua--ga -----|Agcc aucaug-ccu ----gCUA(G 2341 UUAAA)UAGG UA-------u gccu-aagua --u------- ----cccaac -aUC(-GAAA 2401 -)GA|a---- ----ucuaua uuaauaagc- -ucac----- uuu-gauaUC ACGAA-Agca 2461 aaacu---CA CAAACCGGG( AUUAGAUAC) CCCG-CUAU| -gccu--gc- CAUAAA--ua 2521 a--------- |--|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a caa-ccgu-- ---------- 2701 ---|--C|GC C-aGGG-CAC UACGAAC(-- -AAUC--)GU UUA--AAACC CAAAGAAC-U 2761 UG|ACGGCA- CCCUAAA-CC CACCUAGA|G GAGCCUGU-C |CUAUAA-CC CG(AUACUCC 2821 A--------- ----)CGUUU U-ACCCAACC GCCUCUCGCC ---------- ---------- 2881 (--------- cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC AAC-|CUU(A --UAA)AAG- -----(aau- 3181 aa-)------ c-cGUAGGCA AAA-aagu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -cuaucuau- 3781 ---------a caaauA-CGU C-AGGUCGAG G|UGCA|ACC UAU------- ---------G 3841 A-G-GC-AG- GC-AGA--GA -UGGGCUACA CU--CUCU-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ccc--)---- ---------- ---------- -AG-AGua-- 4021 ---------- -----uaCGA --AUaau-uu a-a(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) a-aa-u--uu -u--GAAGG- --UGGAUUUA 4141 G-C--AGUAA A-CAAGAA(- -uagu-uu-- --)GUCUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -guu--gcca 4261 cUAGGG-UG- CGUACACA-C -CGCCCGUCA C-UCU--CC- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< ----cccca- 4381 caccc----- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- --gG-AGA-A AAGUCGUAAC AUGGUAAG-C GUA-CC(GGA 4621 -A)GGU-GC- GCUUGGAaaa ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (11)-GNATH 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (12)-CHOND 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.S.canic 5213 bp RNA RNA 17-SEP-1998 DEFINITION Mitochondrion Scyliorhinus canicula.; 12S rRNA; 16S rRNA; ATPase 6; ATPase 8; COI gene; COII gene; COIII gene; complete genome; control region; cytb gene; mitochondrial; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; origin of replication; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. ACCESSION Y16067 KEYWORDS 12S rRNA; 16S rRNA; ATPase 6; ATPase 8; COI gene; COII gene; COIII gene; complete genome; control region; cytb gene; mitochondrial; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; origin of replication; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Mitochondrion Scyliorhinus canicula. ORGANISM Mitochondrion Scyliorhinus canicula. REFERENCE 1 (bases 1 to 16697) AUTHORS Delarbre,C., Spruyt,N., Delmarre,C., Gallut,C., Barriel,V., Janvier,P., Laudet,V. and Gachelin,G. TITLE The complete nucleotide sequence of the mitochondrial DNA of the dogfish, scyliorhinus canicula JOURNAL Genetics 150 (1), 331-344 (1998) STANDARD No information REFERENCE 2 (bases 1 to 16697) AUTHORS Gachelin,G. TITLE Direct Submission JOURNAL Submitted (30-DEC-1997) G. Gachelin, Institut Pasteur, Dept. of Immunology, 25 rue du Docteur ROUX, 75015 Paris Cedex, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y16067 Related sequence Y09526. BASE COUNT 308 a 225 c 190 g 237 t 4253 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- -uguUAGGUU 661 (UGG-)U-CC U|GACCU-UA GUG-UUAAUU -G-CAAC-UA |AA-AU--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAGAA---UG C|CCU-Aa-- --gu-auu-- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cuauua- -----)---- 1261 ---------- ---------- -aau--aa-- --uUAGGGGC |--------- GGGCAUCA-- 1321 -GGCACACAU -----(uuua c--------- ---------- ---------- ------)--- 1381 -AUGU|---G GCCCA--AGA C|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|--CCC--( UAAG-)--GG uuuu---C-A 1501 GCA|GUA-AU AAACAUUGAU uaCAUAAGC( ---------- ----GUAA)G CUUGA-AUC| 1561 A|-GUUA-A- AG-UCG---a ca-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAGU|--- -GAC-UCA-- 1981 CAUUA-ACAC U--------u ccCGGC|GUA AAGUGUGAuu -u-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----gauga ccuccaaaua acuaua--gu -----|uaug accuca-uca ----aGCU(G 2341 UUAUA)CGCA U-------uc guga-ac--g gaa------- -uaaucaaca --AC(-GAAA 2401 -)GU|g---- ----acucua --aauuacca gg---aau-- cuu-gaugUC ACGAC-AGUU 2461 G-GGC---CC CAAACUAGG( AUUAGAUAC) CCUA-CUAU| -GCCC-UAC- CAUAAA-CUU 2521 A--GACA-AU |AC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(cuac)u a---U-AUUG 2701 U-C|--C|GC C-AGAG-UAC UACAAGC(-- -GCUA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CCCCACA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AC CG(AUAAUCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUUGCC ---------- ---------- 2881 (-------au ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGU CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU CAC-|CCC(G --UGA)GGG- -----(uua- 3181 aa-)------ a-aGUAAGCA AAA-aGAA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuaaac 3781 ---------U CCuaAA-CGU C-AGGUCGAG G|UGUA|GCG AAU------- ---------G 3841 A-A-GU-GG- AA-AGA--AA -UGGGCUACA UU--UU-U-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- ccA-AAaaa- 4021 ---------- -----UACGG --ACAGU-AA A-C(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) A-AU-U--AC -C--CAAAG- -GUGGAUUUA 4141 G-C--AGUAA G-AGAAGG(- UCAGA-GU-- --)ACUUCUC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACU--GGCU 4261 CUGGGG-CG- CGCACACA-C -CGCCCGUCA C-UCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aauaaaua- 4381 cac-u--uau (u-uuu)aua aaaau---uu u-accaaaac a--------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------a GAGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAACC AA-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.manaz 5213 bp RNA RNA 12-SEP-1998 DEFINITION Mitochondrion Mustelus manazo.; . ACCESSION AB0159 2 KEYWORDS . SOURCE Mitochondrion Mustelus manazo. ORGANISM Mitochondrion Mustelus manazo. REFERENCE 1 (sites) AUTHORS Cao,Y., Waddell,P.J., Okada,N. and Hasegawa,M. TITLE The complete mitochondrial DNA sequence of the shark (Mustelus manazo): Evaluating rooting contradictions to living bony vertebrates JOURNAL Mol. Biol. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 16707) AUTHORS Cao,Y. TITLE Direct Submission JOURNAL Submitted (07-JUL-1998) to the DDBJ/EMBL/GenBank databases. Ying Cao, The Institute of Statistical Mathematics; 4-6-7 Minami-Azabu, Minato-ku, Tokyo 106-8569, Japan (E-mail:cao@ism.ac.jp, Tel: +81-3-5421-8748, Fax: +81-3-5421-8796) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB015962 BASE COUNT 316 a 215 c 184 g 241 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- -uacaAGGUU 661 (UGG-)U-CC U|GGCCU-UA GUG-UUAAUU -G-UAAC-UA |GA-AU--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCUCCUGU GAGAA---UG C|CCU-Aa-- --uu-aau-- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cuauua- -----)---- 1261 ---------- ---------- -aau--aa-- --uUAGGAGC |--------- AGGUAUCA-- 1321 -GGCACA--- -----(cgca cgu------- ---------- ---------- ------)--- 1381 ----A|---- GCCCA--AGA C|ACCUU-GC --|------- (-uaa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG auuu---C-A 1501 GCA|GUA-AU AAACAUUAAU u-CAUGAGC( ---------- ----GAAA)G CUUGA-AUU| 1561 A|-GUUA-A- AG-UCG---a ca-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -UAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAGU|--- -AAC-UCA-- 1981 UAUUA-ACAC A--------c ccCGGC|GUA AAGAGUGGuu -u-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----aauga ccuuuuaaua acuaaa--gu -----|uuag accuca-uaa ----aGCU(G 2341 UUAUA)CGCA C-------uc auga-gu--g gaa------- -uaaucaaca --AC(-GAAA 2401 -)GU|g---- ----acuuua --cauauuaa gg---agc-- cuu-gaugCC ACGAU-AGUU 2461 G-AGA---CC CAAACUAGG( AUUAGAUAC) CCUA-CUAU| -GCCC-AAC- CAUAAA-CUU 2521 A--GACA-AU |AC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(ucac)c a---U-AUUG 2701 U-U|--C|GC C-AGAG-UAC UACAAGC(-- -GCUA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUA- UCCCACA-CC CACCUAGA|G GAGCCUGU-U |CUAUG--AC CG(AUAAUCC 2821 C--------- ----)CGUUC A-ACCUCACC ACUUCUUGCC ---------- ---------- 2881 (-------au ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGU CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU CAC-|CCU(G --UGA)AGG- -----(guc- 3181 aa-)------ a-aGUAAGCA AAA-aGAA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuaaac 3781 ---------U CCaaAA-CGU C-AGGUCGAG G|UGUA|GCA AAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UU-U-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u -a---)---- ---------- ---------- ccA-AAaaca 4021 ---------- -----UACGA --AUGGU-AA A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) A-UA-U--AC -C--UAAAG- -GUGGAUUUA 4141 G-C--AGUAA G-AGAAGA(- UCAGA-GU-- --)ACUUCCC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCU 4261 CUGGGA-UG- CGCACACA-C -CGCCCGUCA C-UCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aa-aaacc- 4381 uac-u--uau (u-uuu)uua uaaauacauu u--cuuuaac a--------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------a GAGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAAUC AA-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (12)-bony 5213 bp RNA RNA 25-JAN-1994 DEFINITION bony vertebrates. ACCESSION No information KEYWORDS No information. SOURCE bony vertebrates. ORGANISM bony vertebrates. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (13)-Actin 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (14)-CHOND 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.P.ornat 5213 bp RNA RNA 30-DEC-1997 DEFINITION Mitochondrion Polypterus ornatipinnis.; . ACCESSION U62532 KEYWORDS . SOURCE Mitochondrion Polypterus ornatipinnis. ORGANISM Mitochondrion Polypterus ornatipinnis. REFERENCE 1 (bases 1 to 16624) AUTHORS Noack,K., Zardoya,R. and Meyer,A. TITLE The complete mitochondrial DNA sequence of the bichir (Polypterus ornatipinnis), a basal ray-finned fish: ancient establishment of the consensus vertebrate gene order JOURNAL Genetics 144 (3), 1165-1180 (1996) STANDARD No information REFERENCE 2 (bases 1 to 16624) AUTHORS Noack,K., Zardoya,R. and Meyer,A. TITLE Direct Submission JOURNAL Submitted (28-JUN-1996) Ecology & Evolution, State University of New York at Stony Brook, 661 Life Sciences, Stony Brook, NY 11794-5245, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U62532 BASE COUNT 295 a 228 c 203 g 224 t 4263 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGAUU 661 (UGG-)U-CC U|AGUCU-UA CUA-UCAUUU cU-CGAC-UA |AA-CU--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCUCCGGU GAAAA---UG C|CCU-Caau --cu-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-cuagua -----)---- 1261 ---------- ---------- --ga--gga- --uAAGGAGC |--------- UGGCAUCA-- 1321 -GGCUCGU-- -----(gucc ---------- ---------- ---------- ------)--- 1381 ---AC|--gG CCCCA--AAA C|GCCUU-GC --|------- (-uuu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG Auuu---C-A 1501 GCA|GUA-GU AAACAUUAGG C-AAUCAGC( ---------- ----GAAA)G CUAGA-CCU| 1561 A|-GUUA-U- AG-UUA---a uua------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAGG|--- -GGC-UCC-- 1981 AAAUG-AUGG U-------ua uaCGGC|GUA UGGCGUGGUU -A-aca---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a-uu -acaauaaaa acugag--aa -----|CAAA AUACCU-UUA ----AGCU(G 2341 UCAUA)CGCU AA------u- aagu-ccAUG AAA------- ----aucaac -AAC(-GAAA 2401 -)GU|U---- ----aucuca u---uaua-- ---------- ugu-gaacCC ACGAA-AACC 2461 A-AGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-GGU- CUUAAA-CUA 2521 A--GGCG-GC |AC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -uu(auac)- u--AA-GCCG 2701 C-U|--C|GC C-AGGU-UAC UACGAGC(-- -GCAA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUCAGA-AC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAUCC 2821 U--------- ----)CGUUC A-ACCUCACC GCAUCUUGC- ---------- ---------- 2881 (-------au uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-UC UAC-|CUU(U --UGA)GAG- -----(acc- 3181 au-)------ A-AGUAGGCC CAA-UAAG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaaaa- 3781 ---------C UUAACA-CGU C-AGGUCAAG G|UGUA|GCU UAU------- ---------G 3841 A-U-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g au---)---- ---------- ---------- UAG-AAua-- 4021 ---------- -----CACGA --AAGAC-AC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) C-UG-U--GU -C--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UGGGGA(- guaga-gu-- --)GCCC-AC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -gcuu-GGCG 4261 CUGAAG-CG- CGCACACA-C -CGCCCGUCA C-UCU--CCU CC-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaacauuu- 4381 uauaa-uuuu uaauaaaaca cuuccgacaa ua-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGGAAUA ACC------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (14)-Neopt 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (15)-TELEO 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (16)-EUTEL 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (17)-ACANT 5213 bp RNA RNA 25-JAN-1994 DEFINITION ACANTHOPTERYGII. ACCESSION No information KEYWORDS No information. SOURCE ACANTHOPTERYGII. ORGANISM ACANTHOPTERYGII. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (18)-PERCO 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.H.velif 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Histiodraco velifer.; 12S ribosomal RNA. ACCESSION Z32710 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Histiodraco velifer. ORGANISM Mitochondrion Histiodraco velifer. REFERENCE 1 (bases 1 to 373) AUTHORS Battaglia,B. and Meyer,A. Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., TITLE Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of antifreeze glycopeptides JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32710 NCBI gi: 530394 BASE COUNT 103 a 99 c 89 g 82 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~GC- CGUAAA-CAU 2521 U--GAUA-GA |UU|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- --a(auac)a ac--C-CCUA 2701 U-C|--C|GC C-CGGG-AAC UACGAGC(-- -AC-ca-)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUACUAGA|G GAGCCUGU-U |CUAAA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCU(A --UGA)AGG- -----(uuu- 3181 aaa)------ --AGUAGGCU CAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAGAA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-GA-GGG -A-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u cu---)---- ---------- ---------- UAG-GGCAC- 4021 ---------- ------ACGA --AUGGU-GU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) G-CA-C--AU -Cu-UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGGAA(- gua-gagc-- --)GUCCCGC U-gaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCU 4261 C~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.antar 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Cryodraco antarcticus.; 12S ribosomal RNA. ACCESSION Z32705 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Cryodraco antarcticus. ORGANISM Mitochondrion Cryodraco antarcticus. REFERENCE 1 (bases 1 to 372) AUTHORS Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., Battaglia,B. and Meyer,A. TITLE Antarctica (suborder Notothenioidei) and the evolution of antifreeze glycopeptides Mitochondrial and nuclear phylogenies of fishes from JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 372) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32705 NCBI gi: 530365 BASE COUNT 105 a 96 c 89 g 82 t 4841 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~C- CGUAAA-CAU 2521 U--GAUA-GA |UU|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- --a(auac)a ac--C-CCUA 2701 U-C|--C|GC C-CGGG-AAC UACGAGC(-- -AC-ca-)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCU(A --UGA)AGG- -----(acu- 3181 a--)-----a a-AGUAGGCU AAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAGAA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-AAGG-GG- -A-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-GGCAC- 4021 ---------- ------ACGA --AUGGU-GU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) G-CA-C--AU -Cu-UGAAG- -GAGGAUUUA 4141 G-C--AGUAA --gcagga(- -agua-ga-- --)gcguucu g-cug----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AAA--CUGG 4261 CUC~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.scott 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Pogonophryne scotti.; 12S ribosomal RNA. ACCESSION Z32716 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Pogonophryne scotti. ORGANISM Mitochondrion Pogonophryne scotti. REFERENCE 1 (bases 1 to 373) AUTHORS Battaglia,B. and Meyer,A. Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., TITLE Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of antifreeze glycopeptides JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32716 NCBI gi: 530763 BASE COUNT 104 a 99 c 88 g 82 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~GC- CGUAAA-CAU 2521 U--GAUA-GA |UU|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- --a(auac)a ac--C-CCUA 2701 U-C|--C|GC C-CGGG-AAC UACGAGC(-- -AC-ca-)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCU(A --UGA)AGG- -----(uuu- 3181 aaa)------ --AGUAGGCU CAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAGAA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-AA-GGG -A-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u cu---)---- ---------- ---------- UAG-GGCAC- 4021 ---------- ------ACGA --AUGGU-GU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) G-CA-C--AU -Cu-UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGGAA(- aua-gagc-- --)GUCCCGC U-Gaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCU 4261 C~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.mawso 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Cygnodraco mawsoni.; 12S ribosomal RNA. ACCESSION Z32706 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Cygnodraco mawsoni. ORGANISM Mitochondrion Cygnodraco mawsoni. REFERENCE 1 (bases 1 to 373) AUTHORS Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., Battaglia,B. and Meyer,A. TITLE antifreeze glycopeptides Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32706 NCBI gi: 530373 BASE COUNT 104 a 98 c 88 g 83 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~GC- CGUAAA-CAU 2521 U--GAUA-GA |UU|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- --a(guac)a ac--C-CCUA 2701 U-C|--C|GC C-CGGG-AAC UACGAGC(-- -AC-ca-)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUACUAGA|G GAGCCUGU-U |CUGCA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC CUUCCUUGUU ---------- ---------- 2881 (-------uu cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCU(A --UGA)GGG- -----(ucu- 3181 aaa)------ --AGUAAGCU AAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAAAA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-AG-GGG -A-AGA--AA -UGGGCUACA UU--CCCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-GGcau- 4021 ---------- ------ACGA --AUCGU-GU G-U(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) A-CA-C--AU -Cu-UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGGAA(- aua-gagc-- --)GUCCUGC U-gaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCU 4261 C~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.G.acuti 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Gymnodraco acuticeps.; 12S ribosomal RNA. ACCESSION Z32709 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Gymnodraco acuticeps. ORGANISM Mitochondrion Gymnodraco acuticeps. REFERENCE 1 (bases 1 to 373) AUTHORS Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., Battaglia,B. and Meyer,A. TITLE antifreeze glycopeptides Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32709 NCBI gi: 530379 BASE COUNT 104 a 97 c 89 g 83 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~~~GC- CGUAAA-CAU 2521 U--GAUA-GA |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a ---ccccCUA 2701 U-C|--C|GC C-CGGG-AAC UACGAGC(-- -ACCA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCU(A --UGA)AGG- -----(ucu- 3181 aa-)------ a-aGUAGGCU AAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAGAA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-AG-GG- GA-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-GGCAC- 4021 ---------- ------ACGA --AUGGU-AU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) G-CA-C--AU CU--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGGAA(- guaga-gc-- --)GUCCUGC U-GAAA---- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UU---GGCU 4261 C~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.charc 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Parachaenichthys charcoti.; 12S ribosomal RNA. ACCESSION Z32714 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Parachaenichthys charcoti. ORGANISM Mitochondrion Parachaenichthys charcoti. REFERENCE 1 (bases 1 to 373) AUTHORS Battaglia,B. and Meyer,A. Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., TITLE Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of antifreeze glycopeptides JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32714 NCBI gi: 530749 BASE COUNT 102 a 99 c 91 g 81 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~~~GC- CGUAAA-CAU 2521 U--GAUA-GA |uu|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a ---acccCUA 2701 U-C|--C|GC C-CGGG-AAC UACGAGC(-- -ACCA--)GC UUG--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUACUAGA|G GAGCCUGU-U |CUAUA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------cc cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCU(A --UGA)AGG- -----(ucu- 3181 aa-)------ a-aGUAGGCU AAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAAAA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-AG-GG- GA-AGA--AA -UGGGCUACA UU--CCCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u gu---)---- ---------- ---------- CAG-GGCAU- 4021 ---------- ------ACGA --AUGGU-GU G-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) A-CA-C--AU CU--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGGGA(- gcaga-gc-- --)GUCCUGC U-GAAA---- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UU---GGCU 4261 C~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.B.varie 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Bovichtus variegatus.; 12S ribosomal RNA. ACCESSION Z32702 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Bovichtus variegatus. ORGANISM Mitochondrion Bovichtus variegatus. REFERENCE 1 (bases 1 to 374) AUTHORS Battaglia,B. and Meyer,A. Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., TITLE Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of antifreeze glycopeptides JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 374) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32702 NCBI gi: 530362 BASE COUNT 105 a 99 c 80 g 90 t 4839 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- -~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~-~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~C- CCUAAA-CAU 2521 U--UAUA-GU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(cuac)a ---accUCUA 2701 U-U|--C|GC C-UGGA-AAC UACGAGC(-- -GCGA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CUUCUAGA|G GGACACGU-C |CUAGA--AC CG(ACAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---c---CGC CUA-UA|UA- 3121 |CC|-AC--C |G------UC GU-AA|G-CU GAC-|CCU(G --UGA)AGG- -----(aau- 3181 c--)-----a u-aGUAAGCU CAA-CUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GUG UAU------- ---------G 3841 G-A-AA-GG- GA-AGA--AA -CGCGUCCCA UU--UUCU-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au uaa--)---- ---------- ---------- -AG-AAccc- 4021 ---------- ------cCCG --AUAAU-GU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) G-CA-U--GU UUuaUGAAG- -UAGAAUUUA 4141 G-C--AGUAA G-CAGGAA(- gcaga-gc-- --)GUCCUGC U-GAAA---- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UU---GGCU 4261 C~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~-~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.acera 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Chaenocephalus aceratus.; 12S ribosomal RNA. ACCESSION Z32703 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Chaenocephalus aceratus. ORGANISM Mitochondrion Chaenocephalus aceratus. REFERENCE 1 (bases 1 to 373) AUTHORS Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., Battaglia,B. and Meyer,A. TITLE Antarctica (suborder Notothenioidei) and the evolution of antifreeze glycopeptides Mitochondrial and nuclear phylogenies of fishes from JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32703 NCBI gi: 530364 BASE COUNT 105 a 96 c 90 g 82 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~GC- CGUAAA-CAU 2521 U--GAUA-GA |UU|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- --a(auac)a ac--C-CCUA 2701 U-C|--C|GC C-CGGG-AAC UACGAGC(-- -AC-ca-)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCU(A --UGA)AGG- -----(acu- 3181 aaa)------ --AGUAGGCU AAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAGAA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-AG-GGG -A-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-GGCAC- 4021 ---------- ------ACGA --AUGGU-GU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) G-CA-C--AU -Cu-UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGGAA(- gua-gagc-- --)GUUCUGC U-gaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACU--GGCU 4261 C~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.hamat 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Chionodraco hamatus.; 12S ribosomal RNA. ACCESSION Z32704 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Chionodraco hamatus. ORGANISM Mitochondrion Chionodraco hamatus. REFERENCE 1 (bases 1 to 373) AUTHORS Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., Battaglia,B. and Meyer,A. TITLE antifreeze glycopeptides Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32704 NCBI gi: 530371 BASE COUNT 106 a 97 c 89 g 81 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~GC- CGUAAA-CAU 2521 U--GAUA-GA |UU|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- --a(auac)a ac--C-CCUA 2701 U-C|--C|GC C-CGGG-AAC UACGAGC(-- -AC-ca-)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCU(A --UGA)AGG- -----(acu- 3181 aaa)------ --AGUAGGCU AAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAGAA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-AG-GGG -A-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-GGCAC- 4021 ---------- ------ACGA --AUGGU-GU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) A-CA-C--AU -Cu-UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGGAA(- gua-gagc-- --)GUCCUGC U-gaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACU--GGCU 4261 C~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.macro 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Pagetopsis macropterus.; 12S ribosomal RNA. ACCESSION Z32748 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Pagetopsis macropterus. ORGANISM Mitochondrion Pagetopsis macropterus. REFERENCE 1 (bases 1 to 373) AUTHORS Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., Battaglia,B. and Meyer,A. TITLE antifreeze Glycopeptides Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32748 NCBI gi: 530754 BASE COUNT 104 a 97 c 90 g 82 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~GC- CGUAAA-CAU 2521 U--GAUA-GA |UU|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- --a(auac)a ac--C-CCUA 2701 U-C|--C|GC C-CGGG-AAC UACGAGC(-- -AC-ca-)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUACCCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCU(A --UGA)AGG- -----(acu- 3181 aaa)------ --AGUAGGCU AAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAGAA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-AG-GGG -A-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ac---)---- ---------- ---------- UAG-GGuac- 4021 ---------- ------ACGA --AUGGU-GU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) G-UA-C--AU -Cu-UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGGAA(- gua-gagc-- --)GUCCUGC U-Gaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACU--GGCU 4261 C~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.mawso 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Dissostichus mawsoni.; 12S ribosomal RNA. ACCESSION Z32707 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Dissostichus mawsoni. ORGANISM Mitochondrion Dissostichus mawsoni. REFERENCE 1 (bases 1 to 373) AUTHORS Battaglia,B. and Meyer,A. Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., TITLE Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of antifreeze glycopeptides JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32707 NCBI gi: 530375 BASE COUNT 106 a 94 c 88 g 85 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~GC- CGUAAA-CAU 2521 U--GAUA-GA |UU|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- --a(auac)a ac--C-CCUA 2701 U-C|--C|GC C-CGGG-AAC UACGAGC(-- -AC-ca-)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCU(A --UGA)AGG- -----(uuu- 3181 aaa)------ --AGUAGGCU AAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cauag- 3781 ---------C CCAGAA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-AG-GGG -A-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- UAG-GGcaa- 4021 ---------- ------ACGA --AUGAU-AU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) G-CA-C--AU -Cu-UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGGAA(- gua-gagc-- --)GUCCCGC U-gaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCU 4261 C~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.G.gibbe 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Gobionotothen gibberifrons.; 12S ribosomal RNA. ACCESSION Z32708 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Gobionotothen gibberifrons. ORGANISM Mitochondrion Gobionotothen gibberifrons. REFERENCE 1 (bases 1 to 373) AUTHORS Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., Battaglia,B. and Meyer,A. TITLE antifreeze glycopeptides Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32708 NCBI gi: 530381 BASE COUNT 106 a 96 c 87 g 84 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~GC- CGUAAA-CAU 2521 U--GAUA-GA |CC|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- --a(auac)a ac--C-CCUA 2701 U-C|--C|GC C-CGGG-AAC UACGAGC(-- -AC-ca-)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCU(A --UGA)AGG- -----(uuu- 3181 aaa)------ --AGUAGGCU AAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cauag- 3781 ---------C CCAGCA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-AA-GGG -A-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a uu---)---- ---------- ---------- UAG-GGCAC- 4021 ---------- ------ACGA --AUGAU-AU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) G-CA-C--AU -Cu-UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-UAGGAA(- gua-gagc-- --)GUCCUGC U-gaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCU 4261 C~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.N.corii 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Notothenia coriiceps.; 12S ribosomal RNA. ACCESSION Z32712 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Notothenia coriiceps. ORGANISM Mitochondrion Notothenia coriiceps. REFERENCE 1 (bases 1 to 373) AUTHORS Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., Battaglia,B. and Meyer,A. TITLE Antarctica (suborder Notothenioidei) and the evolution of antifreeze glycopeptides Mitochondrial and nuclear phylogenies of fishes from JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32712 NCBI gi: 530731 BASE COUNT 103 a 94 c 89 g 87 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- -~~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~~~GC- CGUAAA-CAU 2521 U--GAUA-GA |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a ---ccccCUA 2701 U-C|--C|GC C-CGGG-AAA UACGAGC(-- -ACCA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCU(A --UGA)AGG- -----(uuu- 3181 aa-)------ a-aGUAGGCU UAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAAAA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-AA-GG- GA-AGA--AA -UGGGCUACA UU--CCCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- UAG-GGCAC- 4021 ---------- ------ACGA --AUGGU-GU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) G-CA-C--AU CU--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-UAGGAA(- guaga-gc-- --)GUCCUGC U-GAAA---- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UU---GGCU 4261 C~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.borch 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Pagothenia borchgrevinki.; 12S ribosomal RNA. ACCESSION Z32715 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Pagothenia borchgrevinki. ORGANISM Mitochondrion Pagothenia borchgrevinki. REFERENCE 1 (bases 1 to 373) AUTHORS Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., Battaglia,B. and Meyer,A. TITLE antifreeze glycopeptides Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32715 NCBI gi: 530744 BASE COUNT 102 a 96 c 89 g 86 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~~~GC- CGUAAA-CAU 2521 U--GAUA-GG |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a ---accCCUA 2701 U-C|--C|GC C-CGGG-AAC UACAAGC(-- -ACAA--)GC UUG--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCC(G --UGA)GGG- -----(cuu- 3181 aa-)------ a-aGUAGGCU UAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAAUA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-AA-GG- GA-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- UAG-GGCAC- 4021 ---------- ------ACGA --AUGAU-AU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) G-CA-U--AU CU--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGGAA(- guaga-gc-- --)GUCCUGC U-GAAA---- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UU---GGCU 4261 C~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.T.eulep 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Trematomus eulepidotus.; 12S ribosomal RNA. ACCESSION Z32717 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Trematomus eulepidotus. ORGANISM Mitochondrion Trematomus eulepidotus. REFERENCE 1 (bases 1 to 373) AUTHORS Battaglia,B. and Meyer,A. Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., TITLE Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of antifreeze glycopeptides JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32717 NCBI gi: 529996 BASE COUNT 101 a 95 c 90 g 87 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~~~GC- CGUAAA-CAU 2521 U--GAUA-GG |uu|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a ---accCCUA 2701 U-C|--C|GC C-CGGG-AAC UACAAGC(-- -ACAA--)GC UUG--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCC(G --UGA)GGG- -----(cuu- 3181 aa-)------ a-aGUAGGCU UAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAAUA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-AA-GG- GA-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- UAG-GGCAC- 4021 ---------- ------ACGA --AUGAU-GU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) G-CA-U--GU CU--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGAAA(- guaga-gc-- --)GUUCUGC U-GAAA---- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UU---GGCU 4261 C~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.T.hanso 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Trematomus hansoni.; 12S ribosomal RNA. ACCESSION Z32718 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Trematomus hansoni. ORGANISM Mitochondrion Trematomus hansoni. REFERENCE 1 (bases 1 to 373) AUTHORS Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., Battaglia,B. and Meyer,A. TITLE antifreeze glycopeptides Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32718 NCBI gi: 529998 BASE COUNT 102 a 94 c 90 g 87 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~~~GC- CGUAAA-CAU 2521 U--GAUA-GG |uu|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a ---accCCUA 2701 U-C|--C|GC C-CGGG-AAC UACAAGC(-- -ACAA--)GC UUG--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCC(G --UGA)GGG- -----(cua- 3181 aa-)------ a-aGUAGGCU UAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cauaa- 3781 ---------C CCAAUA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-AG-GG- GA-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- UAG-GGCAC- 4021 ---------- ------ACGA --AUGAU-GU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) G-CA-U--AU CU--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGGAA(- guaga-gc-- --)GUUCUGC U-GAAA---- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UU---GGCU 4261 C~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.T.nicol 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Trematomus nicolai.; 12S ribosomal RNA. ACCESSION Z32719 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Trematomus nicolai. ORGANISM Mitochondrion Trematomus nicolai. REFERENCE 1 (bases 1 to 373) AUTHORS Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., Battaglia,B. and Meyer,A. TITLE Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of antifreeze glycopeptides JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32719 NCBI gi: 530000 BASE COUNT 101 a 93 c 90 g 89 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~~~GC- CGUAAA-CAU 2521 U--GAUA-GG |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a ---accCCUA 2701 U-C|--C|GC C-CGGG-AAC UACAAGC(-- -ACAA--)GC UUG--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCC(G --UGA)GGG- -----(uuu- 3181 aa-)------ a-aGUAGGCU UAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAAUA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-AA-GG- GA-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- UAG-GGUAC- 4021 ---------- ------ACGA --AUGAU-AU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) G-CA-U--GU CU--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGGAA(- guaga-gc-- --)GUUCUGC U-GAAA---- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UU---GGCU 4261 C~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.T.penne 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Trematomus pennellii.; 12S ribosomal RNA. ACCESSION Z32720 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Trematomus pennellii. ORGANISM Mitochondrion Trematomus pennellii. REFERENCE 1 (bases 1 to 373) AUTHORS Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., Battaglia,B. and Meyer,A. TITLE antifreeze glycopeptides Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32720 NCBI gi: 530002 BASE COUNT 100 a 96 c 90 g 87 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~~~GC- CGUAAA-CAU 2521 U--GAUA-GG |uu|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a ---accCCUA 2701 U-C|--C|GC C-CGGG-UAC UACAAGC(-- -ACAA--)GC UUG--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-UC CUCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CCC(G --UGA)GGG- -----(cua- 3181 aa-)------ a-aGUAGGCU UAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAAUA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-A-AA-GG- GA-AGA--AA -UGGGCUACA UU--CCCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- UAG-GGCAC- 4021 ---------- ------ACGA --AUGCU-AU G-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) G-CA-U--AU CU--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGGAA(- guaga-gc-- --)GUUCUGC U-GAAA---- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UU---GGCU 4261 C~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.L.dearb 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Lycodichthys dearborni.; 12S ribosomal RNA. ACCESSION Z32711 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Lycodichthys dearborni. ORGANISM Mitochondrion Lycodichthys dearborni. REFERENCE 1 (bases 1 to 371) AUTHORS Battaglia,B. and Meyer,A. Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., TITLE antifreeze glycopeptides Mitochondrial and nuclear phylogenies of fishes from Antarctica (suborder Notothenioidei) and the evolution of JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 371) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32711 NCBI gi: 530405 BASE COUNT 100 a 99 c 91 g 81 t 4842 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~~~~C- CCUAAA-CAU 2521 U--GAUA-GU |AC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(ccac)a ---cccACUA 2701 U-C|--C|GC C-UGGG-GAC UACGAGC(-- -AGCA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAGCCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu ac-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(uuu- 3181 aa-)------ u-aGUAAGCA AAA-CUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cuugg- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 G-G-AG-GG- GA-AGA--AA -UGGGCUACA UU--CGCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ug---)---- ---------- ---------- CAG-CGAAU- 4021 ---------- ------ACGG --ACGAU-GC A-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) G-UU-C--AU C---UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGAAA(- auaga-gu-- --)GUUCCGC U-GAAA---- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UU---GGCC 4261 C~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.brach 5213 bp RNA RNA 10-AUG-1994 DEFINITION Mitochondrion Pachycara brachycephalum.; 12S ribosomal RNA. ACCESSION Z32713 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Pachycara brachycephalum. ORGANISM Mitochondrion Pachycara brachycephalum. REFERENCE 1 (bases 1 to 371) AUTHORS Bargelloni,L., Ritchie,P., Patarnello,T., Lambert,D., Battaglia,B. and Meyer,A. TITLE Antarctica (suborder Notothenioidei) and the evolution of antifreeze glycopeptides Mitochondrial and nuclear phylogenies of fishes from JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 371) AUTHORS Bargelloni,L. TITLE Direct Submission JOURNAL Submitted (25-APR-1994) to the EMBL/GenBank/DDBJ databases. Luca Bargelloni, Biology, University of Padova, Via Trieste 75, Padova, 35121, Italy STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z32713 NCBI gi: 530743 BASE COUNT 101 a 101 c 89 g 80 t 4842 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~C- CCUAAA-CAU 2521 U--GAUA-GU |AC|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- --c(ccac)a cc--C-ACUA 2701 U-C|--C|GC C-UGGG-AAC UACGAGC(-- -A-gca-)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC UUUCCUUGUU ---------- ---------- 2881 (-------uu ac-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(uuu- 3181 aau)------ --AGUAAGCU AAA-CUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cuugg- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 G-G-AG-GGG -A-AGA--AA -UGGGCUACA UU--CGCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ug---)---- ---------- ---------- CAG-CGaau- 4021 ---------- ------ACGG --ACGAU-GC A-C(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) G-UC-C--AU -C--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CAGAAA(- aua-gagu-- --)GUUCCGC U-gaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACU--GGCC 4261 C~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.oliva 5213 bp RNA RNA 04-MAR-1997 DEFINITION Mitochondrion Paralichthys olivaceus.; 16S ribosomal RNA; tRNA, Val; 12S ribosomal RNA; tRNA, Phe; tRNA, Pro; tRNA, Thr; Cyt-b; cytochrome b. ACCESSION AB0006 7 KEYWORDS 16S ribosomal RNA; tRNA, Val; 12S ribosomal RNA; tRNA, Phe; tRNA, Pro; tRNA, Thr; Cyt-b; cytochrome b. SOURCE Mitochondrion Paralichthys olivaceus. ORGANISM Mitochondrion Paralichthys olivaceus. REFERENCE 1 (bases 1 to 3576) AUTHORS Saitoh,K. TITLE Direct Submission JOURNAL Kenji Saitoh, Tohoku National Fisheries Research Institute, Hachinohe Branch; Shimo-mekurakubo 25-259, Same, Hachinohe, Aomori 031, Japan (Tel:178-33-1500, Fax:178-34-1357) Submitted (24-JAN-1997) to the DDBJ/EMBL/GenBank databases. STANDARD No information REFERENCE 2 (bases 1 to 3576) AUTHORS Saitoh,K. TITLE Characterization of cloned Japanese flounder mitochondrial DNA fragments JOURNAL Unpublished (1997) STANDARD No information REFERENCE 3 (sites) AUTHORS Saitoh,K. TITLE Length variable mitochondrial control region from the Japanese flounder JOURNAL Unpublished (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB000667 BASE COUNT 295 a 247 c 219 g 188 t 4264 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGCU 661 (UGG-)U-CC U|GACUU-UA CUG-UCGACU -C-UAAC-UA |GA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAGAA---UG C|CCA-Uaac --gc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-ugcuc- -----)---- 1261 ---------- ---------- --gg--gaa- --cAAGGAGC |--------- UGGCAUCA-- 1321 -GGCACAGA- -----(caua ---------- ---------- ---------- ------)--- 1381 --UCU|---G GCCCA--CGA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCU--( CAAG-)--GG AAcu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GCAA)A CUUGA-CUU| 1561 A|-GUUA-A- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAGA|--- -GGC-CCG-- 1981 AGUUG-ACAG A--------c agCGGC|GUA AAGGGUGGUU -A-ggg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -guugaccaa acuaag--gc -----|CGAA CGCUCC-CAA ----AGCU(G 2341 UUAUA)AGCA CC------C- GGGA-GUAUG AAA------- ----cccaau -UAC(-GAAA 2401 -)GU|a---- ----gccuua u---ucac-- ---------- ccu-gaacCC ACGAA-AGCU 2461 A-AGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 C--GAUU-GU |AC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(uuac)a c--uc-aacA 2701 U-C|--C|GC C-CGGG-AAU UACAAAC(-- -GUUA--)GU UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUAACA-UC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC CUCUCUUGCC ---------- ---------- 2881 (-------uc au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-AC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(cuu- 3181 aa-)------ c-AGUAAGCA AAG-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caaag- 3781 ---------C CCAAAA-CGU C-AGGUCGAG G|UGUA|GUG AAU------- ---------G 3841 A-G-GG-GG- GA-AGA--AA -UGGGCUACA UU--UGCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa gc---)---- ---------- ---------- UAG-CAAA-- 4021 ---------- -----UACGA --AUAAU-GC A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) A-UG-C--AA -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA G-CAGGGA(- auaga-gu-- --)GUCCCGC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCC 4261 CUAAAG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCC CA-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -agcccuac- 4381 aagac-uaaa cuaacuaaaa ccaacaaccc gcga------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-A AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGGAAAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (17)-OSTAR 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (18)-CYPRI 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (19)-CYPRI 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (20)-CYPRI 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.C.anoma 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Campostoma anomalum.; . ACCESSION AF023184 KEYWORDS . SOURCE Mitochondrion Campostoma anomalum. ORGANISM Mitochondrion Campostoma anomalum. REFERENCE 1 (bases 1 to 956) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Creek Chubs and the Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 956) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023184 BASE COUNT 296 a 249 c 222 g 189 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -U-UAAC-CU |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCCGU GAGUA---CG C|CCU-Caa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- AGGUAUCA-- 1321 -GGCACAA-- -----(accc ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUUA-A- GG-UUA---a aa-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-G ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------au aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -uacugagac aauaaa--gc -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGa-guccG AAG------- ---accaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----agga gucca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CGUAAA-CUU 2521 A--GACG-UC |AA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(cuac)a a--uaaGACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUAU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA A-GAGGAA(- gcaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaac-aaga uuaccuaaua cuagagccau gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUAA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.aurat 5213 bp RNA RNA 04-JUL-1998 DEFINITION Mitochondrion Carassius auratus.; NADH dehydrogenase subunit 1; tRNA-Pro; tRNA-Thr; cytochrome b; tRNA-Glu; NADH dehydrogenase subunit 6; NADH hydrogenase subunit 5; tRNA-Leu(CUN); tRNA-Ser(AGY) ; tRNA-His; NADH dehydrogenase subunit 4; tRNA-Arg; tRNA-Gly; cytochrome c oxidase subunit III; ATPase 6; ATPase 8; tRNA-Lys; cytochrome c oxidase subunit II; tRNA-Asp; tRNA-Ser(UCN); cytochrome c oxidase subunit I; tRNA-Tyr; tRNA-Cys; tRNA-Asn; tRNA-Ala; tRNA-Trp; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 2; tRNA-Met; tRNA-Gln; tRNA-Ile; tRNA-Leu(UUR); 16S ribosomal RNA; tRNA-Val; 12S ribosomal RNA; tRNA-Phe. ACCESSION AB0069 3 KEYWORDS NADH dehydrogenase subunit 1; tRNA-Pro; tRNA-Thr; cytochrome b; tRNA-Glu; NADH dehydrogenase subunit 6; NADH hydrogenase subunit 5; tRNA-Leu(CUN); tRNA-Ser(AGY); tRNA-His; NADH dehydrogenase subunit 4; tRNA-Arg; tRNA-Gly; cytochrome c oxidase subunit III; ATPase 6; ATPase 8; tRNA-Lys; cytochrome c oxidase subunit II; tRNA-Asp; tRNA-Ser(UCN); cytochrome c oxidase subunit I; tRNA-Tyr; tRNA-Cys; tRNA-Asn; tRNA-Ala; tRNA-Trp; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 2; tRNA-Met; tRNA-Gln; tRNA-Ile; tRNA-Leu(UUR); 16S ribosomal RNA; tRNA-Val; 12S ribosomal RNA; tRNA-Phe. SOURCE Mitochondrion Carassius auratus. ORGANISM Mitochondrion Carassius auratus. REFERENCE 1 (sites) AUTHORS Murakami,M., Yamashita,Y. and Fujitani,H. TITLE ) The complete sequence of mitochondrial genome from a gynogenetic triploid 'ginbuna' (Carassius auratus langsdorfi JOURNAL Zool. Sci. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 16578) AUTHORS Murakami,M. TITLE Direct Submission JOURNAL Submitted (29-AUG-1997) to the DDBJ/EMBL/GenBank databases. Masaru Murakami, Azabu University School of Veterinary Medicine, Laboratory of Molecular Biology; 1-17-71 Fuchinobe, Sagamihara, Kanagawa 229-8501, Japan (E-mail:murakami@azabu-u.ac.jp, Tel: 0427-54-7111, Fax: 0427-53-3395) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB006953 BASE COUNT 305 a 253 c 209 g 187 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGCA 661 (UGG-)U-CC C|GACCU-UA UUA-UCAGCU -U-UAAC-UC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GAAUA---UG C|CCU-Caa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(ccuaccc g----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(aua- ---------- ---------- ---------- ------)--- 1381 ---UU|---a GCCCA--AGA C|GCCUA-GC --|------- (-cga--)-- -------GC| 1441 CACa------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAACAUUAAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUUA-G- UG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-G ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAU U-------AC AACGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- --uaaacaaa aauaaa--gu -----|CAAA uggccc-cuu ----GGCC(G 2341 UCAUA)CGCU UC------ua ggcg-uc-cG AAG------- ----cccuaa -uAC(-GAAA 2401 -)GU|a---- ----acuuua a-----uaaa ccca------ ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CGUAAA-CUU 2521 A--GACA-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a--uA-GAUG 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- UCUCAGA-UC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC ACUCCUAGCC ---------- ---------- 2881 (-------aa cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(uaa- 3181 uaa)------ A-AGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uacaa- 3781 ---------C CCAAAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ca---)---- ---------- ---------- UAG-AAuau- 4021 ---------- -----CACGA --ACAUG-CA C-C(------ ---------- ---------- 4081 ---------- ---------a UGAAAC---) A-GU-G---C -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AGGGAA(- auaga-gu-- --)GUCCCUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcacc-agaa auaucuaaua uaauagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC ACGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGGAUCA AACC-----| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.carpi 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Cyprinus carpio. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Cyprinus carpio. ORGANISM Mitochondrion Cyprinus carpio. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X61010 DEFINITION C.carpio complete mitochondrial genome DNA SOURCE Mitochondrion Cyprinus carpio DNA. ORGANISM Mitochondrion Cyprinus carpio Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Osteichthyes; Actinopterygii; Cypriniformes; Cyprinoidei; Cyprinidae. REFERENCE 1 (bases 1 to 16364) AUTHORS Chang,Y.S. and Huang,F.l. TITLE The cDNA and primary structure of pregrowth hormones of three species o cyprinadae: silver carp, bighead carp andd grass carp JOURNAL Unpublished (1991) COMMENT See X00918 and X17006 for overlapping sequences From EMBL entry MICCCG; dated 15-AUG-1991. FEATURES Location/Qualifiers tRNA 928..996 /gene="tRNA-Phe" rRNA 997..1947 /gene="12S rRNA" tRNA 1948..2019 /gene="tRNA-Val" rRNA 2020..3489 /gene="16S rRNA" tRNA 3490..3566 /gene="tRNA-Leu (UUR)" CDS 3567..4541 /product="NADH ubiquinone oxidoreductase subunit 1" /codon_start=1 tRNA 4545..4617 /gene="tRNA-Ile" tRNA complement(4615..4685) /gene="tRNA-Gln" tRNA 4688..4756 /gene="tRNA-Met" CDS 4757..5803 /product="NADH ubiquinone oxidoreductase subunit 2" /codon_start=1 tRNA 5802..5872 /gene="tRNA-Trp" tRNA complement(5875..5942) /gene="tRNA-Ala" tRNA complement(5944..6016) /gene="tRNA-Asn" tRNA complement(6049..6117) /gene="tRNA-Cys" tRNA complement(6116..6185) /gene="tRNA-Tyr" CDS 6187..7737 /product="cytochrome c oxidasesubunit I" /gene="CoxI" /codon_start=1 tRNA complement(7738..7808) /gene="tRNA-Ser (UCN)" tRNA 7812..7883 /gene="tRNA-Asp" CDS 7897..8586 /product="cytochrome c oxidase subunit II" /gene="CoxII" /codon_start=1 tRNA 8588..8661 /gene="tRNA-Lys" CDS 8665..8829 /product="ATPase 8" /codon_start=1 CDS 8823..9506 /product="ATPase 6" /codon_start=1 CDS 9506..10291 /product="cytochrome c oxidase subunit III" /gene="CoxIII" /codon_start=1 tRNA 10291..10362 /gene="tRNA-Gly" CDS 10363..10713 /product="NADH ubiquinone oxidoreductase subunit 3" /codon_start=1 tRNA 10712..10781 /gene="tRNA-Arg" CDS 10782..11078 /product="NADH ubiquinone oxidoreductase subunit4L" /codon_start=1 CDS 11072..12454 /product="NADH ubiquinone oxidoreductase subunit 4" /codon_start=1 tRNA 12453..12521 /gene="tRNA-His" tRNA 12522..12590 /gene="tRNA-Ser (AGY)" tRNA 12592..12664 /gene="tRNA-Leu (CUN)" CDS 12668..14491 /product="NADH ubiquinone oxidoreductase subunit 5" /codon_start=1 CDS complement(14488..15006) /product="NADH ubiquinone oxidoreductase subunit 6" /codon_start=1 tRNA complement(15007..15075) /gene="tRNA-Glu" CDS 15081..16223 /product="cytochrome b" /codon_start=1 tRNA 16222..16293 /gene="tRNA-Thr" tRNA complement(16292..16363) /gene="tRNA-Pro" BASE COUNT 309 a 256 c 204 g 182 t 4262 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGCA 661 (UGG-)U-CC C|GACCU-UA UUA-UCAGCU -C-UAAC-UC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCAGU GAAUA---UG C|CCU-Caa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cccaccc -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(aca- ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCC-A--AGA C|GCCUA-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAA--)--GG AAuu---C-A 1501 GCA|GUG-AU AAACAUUAAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUUA-G- UG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-AC AGCCACC-GC -GGU-UA)-G ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAU U-------AC AACGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- --uaaacaaa aauaaa--gu -----|CAAA uggccc-cuu ----GGCC(G 2341 UCAUA)CGCU UC------ua ggag-uc-cG AAG------- ----cccuaa -uAC(-GAAA 2401 -)GU|a---- ----acuuua a-----uaaa ccca------ ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CGUAAA-CUC 2521 A--GACA-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --g(cuac)a au-uA-GAUG 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- UCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(uaa- 3181 uaa)------ A-AGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAAAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ua---)---- ---------- ---------- UAG-AAuau- 4021 ---------- -----UACGA --ACAUG-CA CCA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) CAAU-G---C -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AGGGAA(- guaga-gu-- --)GUCCCUU UUGAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaac- 4381 gcacc-aaaa auacauaaua caacagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC ACGGUAAG-U -UA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUCA AACC-----| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.H.fla.1 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Hemitremia flammea.; . ACCESSION AF023189 KEYWORDS . SOURCE Mitochondrion Hemitremia flammea. ORGANISM Mitochondrion Hemitremia flammea. REFERENCE 1 (bases 1 to 952) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) Phylogenetic Relationships of the Creek Chubs and the JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 952) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023189 BASE COUNT 284 a 238 c 222 g 208 t 4261 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC C|GACCU-UA UUA-UCAGCU -U-UAAC-CC |GA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCUGU GAGUA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUA-GC --|------- (-cuu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUUA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-G ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAU G--------u aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- --augcaaac aauaaa--gu -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-gccuG AAG------- ---cccagua -UAC(-GAAA 2401 -)GU|C---- ----acuuua a-----aaua gccca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGU- CAUAAA-CUU 2521 A--GACG-UU |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a--uuAGACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CCUUA A-ACCUCACC ACUUUUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cau--- 3781 ---------A GCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAuac- 4021 ---------- -----UACGG --AUGUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UAAAG- -GAGGAUUUA 4141 G-u--AGUAA A-AAGGAA(- guagc-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-auua auaccuaaua cuaacgcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.H.fla.2 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Hemitremia flammea.; . ACCESSION AF023190 KEYWORDS . SOURCE Mitochondrion Hemitremia flammea. ORGANISM Mitochondrion Hemitremia flammea. REFERENCE 1 (bases 1 to 952) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Fishes (Actinopterygii: Cyprinidae) Phylogenetic Relationships of the Creek Chubs and the Spine-Fins: an Enigmatic Group of North American Cyprinid JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 952) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023190 BASE COUNT 284 a 238 c 223 g 207 t 4261 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC C|GACCU-UA UUA-UCAGCU -U-UAAC-CC |GA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCUGU GAGUA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUA-GC --|------- (-cuu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUUA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-G ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAU G--------u aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- --augcaaac aauaaa--gu -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-gccuG AAG------- ---cccagca -UAC(-GAAA 2401 -)GU|C---- ----acuuua a-----aaua gccca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGU- CAUAAA-CUU 2521 A--GACG-UU |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a--uuaGACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUUUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cau--- 3781 ---------A GCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAuac- 4021 ---------- -----UACGG --AUGUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UAAAG- -GAGGAUUUA 4141 G-u--AGUAA A-AAGGAA(- guagc-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-auua auaccuaaua cuaacgcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.L.vitta 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Lepidomeda vittata.; . ACCESSION AF023191 KEYWORDS . SOURCE Mitochondrion Lepidomeda vittata. ORGANISM Mitochondrion Lepidomeda vittata. REFERENCE 1 (bases 1 to 952) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Creek Chubs and the Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 952) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023191 BASE COUNT 285 a 247 c 226 g 194 t 4261 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |GA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCCGU GAGUA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GA A-uu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUGU U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -acgcaagau aauaaa--gc -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----gaaa gccca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GAU--UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --g(cuac)a a--uuaGACA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cau--- 3781 ---------A GCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAuac- 4021 ---------- -----UACGG --AUAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-GG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA A-GAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaacau- 4381 gcaau-aaag auaccuaacc caaacgcgcc gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.bjoer 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Abramis bjoerkna.; . ACCESSION AF0384 8 KEYWORDS . SOURCE Mitochondrion Abramis bjoerkna. ORGANISM Mitochondrion Abramis bjoerkna. REFERENCE 1 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038468 BASE COUNT 294 a 250 c 219 g 189 t 4261 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UNNNNU -U-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCCGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(ccacccc g----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(guuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-cga--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)G CUUGA-CUC| 1561 A|-AUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCC-- 1981 AGUUA-AUAA U-------ac -aCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aaguauaac gauaaa--gc -----|CGAA uaacCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---uccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----uaga gccca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CGUAAA-CCC 2521 A--GACA-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CG|A-CU UAC-|CCU(G --UGA)AGG- -----(uga- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aa---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- gcaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaag uuacuuaaca ccaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGACUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.aluta 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Acrocheilus alutaceus.; . ACCESSION AF023183 KEYWORDS . SOURCE Mitochondrion Acrocheilus alutaceus. ORGANISM Mitochondrion Acrocheilus alutaceus. REFERENCE 1 (bases 1 to 955) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) Phylogenetic Relationships of the Creek Chubs and the JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 955) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023183 BASE COUNT 295 a 246 c 222 g 191 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)G CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aa-gcaaac aauaaa--gc -----|CAAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-gcccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gacaCC ACGAA-AaCU 2461 G-AGA---AA CGAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CGUAAA-CCU 2521 A--GAUG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a--uuaGACA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AACAC- 4021 ---------- -----UACGG --AUAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA G-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAAc---- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CC---GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaag auucuuaaca cnaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.plu.1 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Couesius plumbeus.; . ACCESSION AF023185 KEYWORDS . SOURCE Mitochondrion Couesius plumbeus. ORGANISM Mitochondrion Couesius plumbeus. REFERENCE 1 (bases 1 to 955) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) Phylogenetic Relationships of the Creek Chubs and the JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 955) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023185 BASE COUNT 291 a 249 c 221 g 194 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCCGU GAGUA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACGA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUUA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -acgcauaac aauaaa--gc -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---uccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 U--GACG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a---uUGACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAAGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGA --AUAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA A-AGGGAA(- gcaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-auag auaccuaaca ccaacgcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAAUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.plu.2 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Couesius plumbeus.; . ACCESSION AF023185 KEYWORDS . SOURCE Mitochondrion Couesius plumbeus. ORGANISM Mitochondrion Couesius plumbeus. REFERENCE 1 (bases 1 to 955) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Creek Chubs and the Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 955) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023186 BASE COUNT 291 a 249 c 221 g 194 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCCGU GAGUA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACGA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUUA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -acgcauaac aauaaa--gc -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---uccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 U--GACG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a---uUGACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAAGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGA --AUAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA A-AGGGAA(- gcaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-auag auaccuaaca ccaacgcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAAUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.venus 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Cyprinella venusta.; . ACCESSION AF023187 KEYWORDS . SOURCE Mitochondrion Cyprinella venusta. ORGANISM Mitochondrion Cyprinella venusta. REFERENCE 1 (bases 1 to 954) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Fishes (Actinopterygii: Cyprinidae) Phylogenetic Relationships of the Creek Chubs and the Spine-Fins: an Enigmatic Group of North American Cyprinid JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 954) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023187 BASE COUNT 285 a 258 c 230 g 181 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGCA 661 (UGG-)U-CC C|GACCU-UA CCA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCCGU GAGUA---GG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- AGGCAUCA-- 1321 -GGCACAA-- -----(aucu ---------- ---------- ---------- ------)--- 1381 ---UU|---G GCCCA--AGA C|GCCGA-GC --|------- (-cca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUU| 1561 A|-GUCA-G- GG-CUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCGCC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUGG A-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -uagugaaac aauaaa--gu -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u GGGa-gccuG AAG------- ---cccacua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----cagc gucca----- ccu-gaccCC ACGAA-AACU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGU- UAUAAA-CCC 2521 A--GACG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a---uAGGCG 2701 U-C|--C|GC C-UGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUG A-ACCUCACC GCUUCUAGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(A --UGA)AGG- -----(uaa- 3181 uaa)------ a-aGUAAGCA AGA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 G-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aa---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --AUUUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-a--AGUAA A-GAGGAA(- gcagc-gu-- --)GUCCUCU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgaaau- 4381 gcaau-caag uuaccuaaca ccaaagcucu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGACGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.E.acros 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Eremichthys acros.; . ACCESSION AF0384 1 KEYWORDS . SOURCE Mitochondrion Eremichthys acros. ORGANISM Mitochondrion Eremichthys acros. REFERENCE 1 (bases 1 to 2655) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2655) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038471 BASE COUNT 298 a 240 c 221 g 197 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUUA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-G ACGAGA|--- -GGC-CCU-- 1981 AGUUA-AUAA U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aagca-aac aauaaa--gc -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----gaag gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GAUG-UC |AA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ua(uuac)a a-uuA-GAUA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 G-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAuac- 4021 ---------- -----UACGA --ACAUC-GA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaag auauuuaaca ucaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.atrar 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila atraria.; . ACCESSION AF0384 2 KEYWORDS . SOURCE Mitochondrion Gila atraria. ORGANISM Mitochondrion Gila atraria. REFERENCE 1 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038472 BASE COUNT 297 a 246 c 220 g 192 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aagca-aac aauaaa--gu -----|CAAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GAUG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GCCA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaag auacuuaaca ccaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.coe.1 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila coerulea.; . ACCESSION AF0384 3 KEYWORDS . SOURCE Mitochondrion Gila coerulea. ORGANISM Mitochondrion Gila coerulea. REFERENCE 1 (bases 1 to 2716) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2716) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038473 BASE COUNT 298 a 246 c 220 g 191 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aagca-aac aauaaa--gc -----|CAAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaga gccca----- ccu-gacaCC ACGAA-AGCU 2461 A-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GAUG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GAUA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaag auacuuaaca ccaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.coe.2 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila coerulea.; . ACCESSION AF0384 4 KEYWORDS . SOURCE Mitochondrion Gila coerulea. ORGANISM Mitochondrion Gila coerulea. REFERENCE 1 (bases 1 to 2716) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2716) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038474 BASE COUNT 298 a 246 c 221 g 190 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aagca-aac aauaaa--gc -----|CAAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGa-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaga gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GAUG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GAUA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaag auacuuaaca ccaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.consp 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila conspersa.; . ACCESSION AF0384 5 KEYWORDS . SOURCE Mitochondrion Gila conspersa. ORGANISM Mitochondrion Gila conspersa. REFERENCE 1 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038475 BASE COUNT 296 a 249 c 219 g 191 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAAUCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -acgca-aac aauaaa--gc -----|CAAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GAUG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GCCA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acagc-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcagu-aaag auacuuaaca ccaaagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.cypha 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Gila cypha.; . ACCESSION AF023188 KEYWORDS . SOURCE Mitochondrion Gila cypha. ORGANISM Mitochondrion Gila cypha. REFERENCE 1 (bases 1 to 954) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Creek Chubs and the Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 954) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023188 BASE COUNT 297 a 246 c 219 g 192 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GA A-uu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- --aagcaaac aauaaa--gu -----|CAAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GAUG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a--uuaGCCA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA A-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaag auacuuaaca ccaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.ditae 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila ditaenia.; . ACCESSION AF0384 6 KEYWORDS . SOURCE Mitochondrion Gila ditaenia. ORGANISM Mitochondrion Gila ditaenia. REFERENCE 1 (bases 1 to 2720) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2720) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038476 BASE COUNT 294 a 248 c 223 g 190 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(guuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUCGA-CUC| 1561 A|-GUUA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAU U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aagca-agc aauaaa--gc -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GAUG-UG |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GCCA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGCCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ca---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaag auacuuaaca ccaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.nigre 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila nigrescens.; . ACCESSION AF0384 8 KEYWORDS . SOURCE Mitochondrion Gila nigrescens. ORGANISM Mitochondrion Gila nigrescens. REFERENCE 1 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038478 BASE COUNT 294 a 248 c 221 g 192 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aagca-aac aauaaa--gc -----|CAAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GAUG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GCCA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acagc-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcagu-aaag auacuuaacu ccaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.orcut 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila orcutti.; . ACCESSION AF0384 9 KEYWORDS . SOURCE Mitochondrion Gila orcutti. ORGANISM Mitochondrion Gila orcutti. REFERENCE 1 (bases 1 to 2719) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2719) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038479 BASE COUNT 294 a 250 c 221 g 190 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-cga--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)G CUUGA-CUC| 1561 A|-GUUA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aagca-aau aauaaa--gc -----|CAAA uggcCC-CUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----agaa gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GAUG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-ACCA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ca---)---- ---------- ---------- CAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acagc-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgaaau- 4381 gcaau-aaag auaucuaacu ccaaagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.pando 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila pandora.; . ACCESSION AF0384 0 KEYWORDS . SOURCE Mitochondrion Gila pandora. ORGANISM Mitochondrion Gila pandora. REFERENCE 1 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038480 BASE COUNT 297 a 247 c 219 g 192 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aagca-aac aauaaa--gc -----|CAAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AAC- CAUAAA-CCU 2521 A--GAUG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GCCA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- auagc-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaag auacuuaaca ccaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.robus 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Gila robusta.; . ACCESSION AF0384 1 KEYWORDS . SOURCE Mitochondrion Gila robusta. ORGANISM Mitochondrion Gila robusta. REFERENCE 1 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038481 BASE COUNT 293 a 249 c 222 g 190 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAA--)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -gagca-cgc aauaaa--gc -----|CAAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccgaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GAUG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GCCA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ca---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaag auacuuaaca ccaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.L.exi.1 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Lavinia exilicauda.; . ACCESSION AF0384 2 KEYWORDS . SOURCE Mitochondrion Lavinia exilicauda. ORGANISM Mitochondrion Lavinia exilicauda. REFERENCE 1 (bases 1 to 2716) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2716) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038482 BASE COUNT 297 a 244 c 220 g 193 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(a-uu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAA U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -acgca-aau aauaaa--gc -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GACG-UU |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGA --AUAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaag auauuuaaca ccaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.L.exi.2 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Lavinia exilicauda.; . ACCESSION AF0384 3 KEYWORDS . SOURCE Mitochondrion Lavinia exilicauda. ORGANISM Mitochondrion Lavinia exilicauda. REFERENCE 1 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038483 BASE COUNT 297 a 245 c 220 g 192 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(a-uu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAA U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -acgca-aau aauaaa--gc -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GACG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGA --AUAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaag auauuuaaca ccaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.L.rutil 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Leuciscus rutilus.; . ACCESSION AF0384 4 KEYWORDS . SOURCE Mitochondrion Leuciscus rutilus. ORGANISM Mitochondrion Leuciscus rutilus. REFERENCE 1 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038484 BASE COUNT 292 a 248 c 223 g 193 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UUAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCCGU GAGUA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-cga--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUA-AUAA U-------ac -aCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -aagcacaau aauaaa--gc -----|CAAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----uaaa gccca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- UAUAAA-CCU 2521 A--GACG-UU |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --g(cuac)a a-uuA-GACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uc aa---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --AUAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- gcaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-gaag uuaccuaaca cuaaagcgcu gacg------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.L.chr.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Luxilus chrysocephalus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Luxilus chrysocephalus. ORGANISM Mitochondrion Luxilus chrysocephalus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U09469 DEFINITION Luxilus chrysocephalus chrysocephalus Whitewater R., Bollinger Co., MO, USA, mitochondrion 12S rRNA and 16S rRNA genes, partial sequence, and tRNA-Val gene, complete sequence. SOURCE striped shiner ORGANISM Mitochondrion Luxilus chrysocephalus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Actinopterygii; Actinopteri; Holostei; Halecostomi; Teleostei; Elopocephala; Clupeocephala; Euteleostei; Ostariophysi; Otophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Luxilus. REFERENCE 1 (bases 1 to 2007) AUTHORS Duvernell,D.D. and Aspinwall,N. TITLE Introgression of Luxilus cornutus mtDNA into allopatric populations of Luxilus chrysocephalus (Teleostei:Cyprinidae) in Missouri and Arkansas JOURNAL Unpublished REFERENCE 2 (bases 1 to 2007) AUTHORS Aspinwall,N. TITLE Direct Submission JOURNAL Submitted (06-MAY-1994) Nevin Aspinwall, Saint Louis University, Biology, 3507 Laclede, St. Louis, MO 63103-2010, USA COMMENT NCBI gi: 488578 FEATURES Location/Qualifiers rRNA <1..469 /product="12S rRNA" tRNA 470..540 /product="tRNA-Val" rRNA 541..>2007 /product="16S rRNA" source 1..2007 /mitochondrion /organism="Luxilus chrysocephalus" /sub_species="chrysocephalus" /isolate="Collection site: Whitewater R., Bollinger Co., MO, USA" /haplotype="CHRC" /tissue_type="muscle, skeletal" /dev_stage="adult" BASE COUNT 142 a 117 c 114 g 96 t 4744 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- -~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~-~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~g(cuac)a ----auCAGA 2701 C-G|--U|CC G-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 ---------- ----)CGUUA A-ACCUCACC GCUUCUAGCC ---------- ---------- 2881 (--------a uc-)------ ------(--- --)----<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->-------- ---c--cAGC -UA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGC- -----(aau- 3181 aa-)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----acaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UCUA-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- -UA-GAauac 4021 ---------- -----UACGG --ACAUGGCA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGA-UUA 4141 G-U--AGU-- A-AAGGAA(- gcagu-gu-- --)GUCCUUU --GAC----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ------GGCU 4261 CU-AGA-CG- CGUACACA-C -CGC-CGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgaaau- 4381 gcagu-aaag uuaccuaaca ccauagcucu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C -AGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUAA AAUU-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.L.chr.2 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Luxilus chrysocephalus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Luxilus chrysocephalus. ORGANISM Mitochondrion Luxilus chrysocephalus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U09472 DEFINITION Luxilus chrysocephalus isolepis mitochondrion 12S rRNA and 16S rRNA genes, partial sequence, and tRNA-Val gene, complete sequence. SOURCE striped shiner ORGANISM Mitochondrion Luxilus chrysocephalus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Actinopterygii; Actinopteri; Holostei; Halecostomi; Teleostei; Elopocephala; Clupeocephala; Euteleostei; Ostariophysi; Otophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Luxilus. REFERENCE 1 (bases 1 to 2008) AUTHORS Duvernell,D.D. and Aspinwall,N. TITLE Introgression of Luxilus cornutus mtDNA into allopatric populations of Luxilus chrysocephalus (Teleostei:Cyprinidae) in Missouri and Arkansas JOURNAL Unpublished REFERENCE 2 (bases 1 to 2008) AUTHORS Aspinwall,N. TITLE Direct Submission JOURNAL Submitted (06-MAY-1994) Nevin Aspinwall, Saint Louis University, Biology, 3507 Laclede, St. Louis, MO 63103-2010, USA COMMENT NCBI gi: 488581 FEATURES Location/Qualifiers rRNA <1..469 /product="12S rRNA" tRNA 470..540 /product="tRNA-Val" rRNA 541..>2008 /product="16S rRNA" source 1..2008 /mitochondrion /organism="Luxilus chrysocephalus" /sub_species="isolepis" /isolate="Collection site: Saline R., Grant Co., AR, USA" /haplotype="CHRI" /tissue_type="muscle, skeletal" /dev_stage="adult" BASE COUNT 142 a 117 c 113 g 97 t 4744 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- -~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~-~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~a(cuac)a ----auCAGG 2701 C-G|--U|CC G-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 ---------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (--------a uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---c--cAGC -UA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGC- -----(aau- 3181 aa-)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----acaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UCUA-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- -UA-GAauac 4021 ---------- -----UACGG --ACAUGGCA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGA-UUA 4141 G-U--AGU-- A-AAGGAA(- gcagu-gu-- --)GUCCUUU --GAC----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ------GGCU 4261 CU-AGA-CG- CGUACACA-C -CGC-CGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgaaau- 4381 gcagu-aaag uuaccuaaca ccauagcucu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C -AGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUAA AAUU-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.L.chr.3 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Luxilus chrysocephalus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Luxilus chrysocephalus. ORGANISM Mitochondrion Luxilus chrysocephalus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U09473 DEFINITION Luxilus chrysocephalus chrysocephalus Meramec R., Jefferson Co., MO, USA, mitochondrion 12S rRNA and 16S rRNA genes, partial sequence, and tRNA-Val gene, complete sequence. SOURCE striped shiner ORGANISM Mitochondrion Luxilus chrysocephalus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Actinopterygii; Actinopteri; Holostei; Halecostomi; Teleostei; Elopocephala; Clupeocephala; Euteleostei; Ostariophysi; Otophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Luxilus. REFERENCE 1 (bases 1 to 2003) AUTHORS Duvernell,D.D. and Aspinwall,N. TITLE Introgression of Luxilus cornutus mtDNA into allopatric populations of Luxilus chrysocephalus (Teleostei:Cyprinidae) in Missouri and Arkansas JOURNAL Unpublished REFERENCE 2 (bases 1 to 2003) AUTHORS Aspinwall,N. TITLE Direct Submission JOURNAL Submitted (06-MAY-1994) Nevin Aspinwall, Saint Louis University, Biology, 3507 Laclede, St. Louis, MO 63103-2010, USA COMMENT NCBI gi: 488582 FEATURES Location/Qualifiers rRNA <1..469 /product="12S rRNA" tRNA 470..540 /product="tRNA-Val" rRNA 541..>2003 /product="16S rRNA" source 1..2003 /mitochondrion /organism="Luxilus chrysocephalus" /sub_species="chrysocephalus" /isolate="Collection site: Meramec R., Jefferson Co., MO, USA" /haplotype="CORN3" /tissue_type="muscle, skeletal" /dev_stage="adult" /note="mtDNA sequence is an introgressed haplotype from L. cornutus" BASE COUNT 142 a 118 c 115 g 94 t 4744 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- -~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~-~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~a(cuac)a ----auCAGG 2701 C-G|--U|CC G-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 ---------- ----)CGUUA A-ACCUCACC GCUUCUAGCC ---------- ---------- 2881 (--------a uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---c--cAGC -UA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGC- -----(aau- 3181 aa-)------ a-aGUAAGCA GAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----acaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UCUA-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- -UA-GAauac 4021 ---------- -----UACGG --ACAUGGCA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGA-UUA 4141 G-U--AGU-- A-AAGGAA(- gcagc-gu-- --)GUCCUUU --GAC----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ------GGCU 4261 CU-AGA-CG- CGUACACA-C -CGC-CGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgaaau- 4381 gcagu-aaag uuaccuaaca ccaaagcucu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C -AGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUAA AAUU-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.L.chr.4 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Luxilus chrysocephalus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Luxilus chrysocephalus. ORGANISM Mitochondrion Luxilus chrysocephalus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U09474 DEFINITION Luxilus chrysocephalus chrysocephalus Fourche A Du Clos Cr., Ste. Genevieve, MO, USA, mitochondrion 12S rRNA and 16S rRNA genes, partial sequence, and tRNA-Val gene, complete sequence. SOURCE striped shiner ORGANISM Mitochondrion Luxilus chrysocephalus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Actinopterygii; Actinopteri; Holostei; Halecostomi; Teleostei; Elopocephala; Clupeocephala; Euteleostei; Ostariophysi; Otophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Luxilus. REFERENCE 1 (bases 1 to 2006) AUTHORS Duvernell,D.D. and Aspinwall,N. TITLE Introgression of Luxilus cornutus mtDNA into allopatric populations of Luxilus chrysocephalus (Teleostei:Cyprinidae) in Missouri and Arkansas JOURNAL Unpublished REFERENCE 2 (bases 1 to 2006) AUTHORS Aspinwall,N. TITLE Direct Submission JOURNAL Submitted (06-MAY-1994) Nevin Aspinwall, Saint Louis University, Biology, 3507 Laclede, St. Louis, MO 63103-2010, USA COMMENT NCBI gi: 488583 FEATURES Location/Qualifiers rRNA <1..470 /product="12S rRNA" tRNA 470..540 /product="tRNA-Val" rRNA 541..>2006 /product="16S rRNA" source 1..2006 /mitochondrion /organism="Luxilus chrysocephalus" /sub_species="chrysocephalus" /isolate="Collection site: Fourche A Du Clos Cr., Ste. Genevieve, MO, USA" /haplotype="CORN4" /tissue_type="muscle, skeletal" /dev_stage="adult" /note="mtDNA sequence is an introgressed haplotype from L. cornutus" BASE COUNT 142 a 119 c 115 g 94 t 4743 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- -~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~-~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~a(cuac)a ----auCAGG 2701 C-G|--U|CC G-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 ---------- ----)CGUUA A-ACCUCACC GCUUCUAGCC ---------- ---------- 2881 (--------a uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---c--cAGC -UA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGC- -----(aau- 3181 aa-)------ a-aGUAAGCA GAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----acaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UCUA-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- -UA-GAauac 4021 ---------- -----UACGG --ACAUGGCA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGA-UUA 4141 G-U--AGU-- A-AAGGAA(- gcagc-gu-- --)GUCCUUU --GAC----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ------GGCU 4261 CU-AGA-CG- CGUACACA-C -CGC-CGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgaaau- 4381 gcagu-aaag uuaccuaaca ccaaagcucu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C -AGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUAA AAUUC----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.L.cor.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Luxilus cornutus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Luxilus cornutus. ORGANISM Mitochondrion Luxilus cornutus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U09470 DEFINITION Luxilus cornutus Yellow R., Chippewa Co., WI, USA, mitochondrion 12S rRNA and 16S rRNA genes, partial sequence, and tRNA-Val gene, complete sequence. SOURCE common shiner ORGANISM Mitochondrion Luxilus cornutus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Actinopterygii; Actinopteri; Holostei; Halecostomi; Teleostei; Elopocephala; Clupeocephala; Euteleostei; Ostariophysi; Otophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Luxilus. REFERENCE 1 (bases 1 to 2004) AUTHORS Duvernell,D.D. and Aspinwall,N. TITLE Introgression of Luxilus cornutus mtDNA into allopatric populations of Luxilus chrysocephalus (Teleostei:Cyprinidae) in Missouri and Arkansas JOURNAL Unpublished REFERENCE 2 (bases 1 to 2004) AUTHORS Aspinwall,N. TITLE Direct Submission JOURNAL Submitted (06-MAY-1994) Nevin Aspinwall, Saint Louis University, Biology, 3507 Laclede, St. Louis, MO 63103-2010, USA COMMENT NCBI gi: 488579 FEATURES Location/Qualifiers rRNA <1..469 /product="12S rRNA" tRNA 470..540 /product="tRNA-Val" rRNA 541..>2004 /product="16S rRNA" source 1..2004 /mitochondrion /organism="Luxilus cornutus" /isolate="Collection site: Yellow R., Chippewa Co., WI, USA" /haplotype="CORN1" /tissue_type="muscle, skeletal" /dev_stage="adult" BASE COUNT 142 a 118 c 115 g 94 t 4744 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- -~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~-~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~a(cuac)a ----auCAGG 2701 C-G|--U|CC G-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 ---------- ----)CGUUA A-ACCUCACC GCUUCUAGCC ---------- ---------- 2881 (--------a uc-)------ ------(--- --)----<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->-------- ---c--cAGC -UA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGC- -----(aau- 3181 aa-)------ a-aGUAAGCA GAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----acaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UCUA-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- -UA-GAauac 4021 ---------- -----UACGG --ACAUGGCA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGA-UUA 4141 G-U--AGU-- A-AAGGAA(- gcagc-gu-- --)GUCCUUU --GAC----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ------GGCU 4261 CU-AGA-CG- CGUACACA-C -CGC-CGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgaaau- 4381 gcagu-aaag uuaccuaaca ccaaagcucu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C -AGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUAA AAUU-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.L.cor.2 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Luxilus cornutus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Luxilus cornutus. ORGANISM Mitochondrion Luxilus cornutus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U09471 DEFINITION Luxilus cornutus Perche Cr., Boone Co., MO, USA, mitochondrion 12S rRNA and 16S rRNA genes, partial sequence, and tRNA-Val gene, complete sequence. SOURCE common shiner ORGANISM Mitochondrion Luxilus cornutus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Actinopterygii; Actinopteri; Holostei; Halecostomi; Teleostei; Elopocephala; Clupeocephala; Euteleostei; Ostariophysi; Otophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Luxilus. REFERENCE 1 (bases 1 to 2004) AUTHORS Duvernell,D.D. and Aspinwall,N. TITLE Introgression of Luxilus cornutus mtDNA into allopatric populations of Luxilus chrysocephalus (Teleostei:Cyprinidae) in Missouri and Arkansas JOURNAL Unpublished REFERENCE 2 (bases 1 to 2004) AUTHORS Aspinwall,N. TITLE Direct Submission JOURNAL Submitted (06-MAY-1994) Nevin Aspinwall, Saint Louis University, Biology, 3507 Laclede, St. Louis, MO 63103-2010, USA COMMENT NCBI gi: 488580 FEATURES Location/Qualifiers rRNA <1..470 /product="12S rRNA" tRNA 470..540 /product="tRNA-Val" rRNA 541..>2004 /product="16S rRNA" source 1..2004 /mitochondrion /organism="Luxilus cornutus" /isolate="Collection site: Perche Cr., Boone Co., MO, USA" /haplotype="CORN2" /tissue_type="muscle, skeletal" /dev_stage="adult" BASE COUNT 142 a 119 c 115 g 94 t 4743 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- -~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~-~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~a(cuac)a ----auCAGG 2701 C-G|--U|CC G-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 ---------- ----)CGUUA A-ACCUCACC GCUUCUAGCC ---------- ---------- 2881 (--------a uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---c--cAGC -UA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGC- -----(aau- 3181 aa-)------ a-aGUAAGCA GAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----acaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UCUA-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- -UA-GAauac 4021 ---------- -----UACGG --ACAUGGCA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGA-UUA 4141 G-U--AGU-- A-AAGGAA(- gcagc-gu-- --)GUCCUUU --GAC----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ------GGCU 4261 CU-AGA-CG- CGUACACA-C -CGC-CGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgaaau- 4381 gcagu-aaag uuaccuaaca ccaaagcucu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C -AGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUAA AAUUC----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.marga 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Margariscus margarita.; . ACCESSION AF023192 KEYWORDS . SOURCE Mitochondrion Margariscus margarita. ORGANISM Mitochondrion Margariscus margarita. REFERENCE 1 (bases 1 to 955) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Fishes (Actinopterygii: Cyprinidae) Phylogenetic Relationships of the Creek Chubs and the Spine-Fins: an Enigmatic Group of North American Cyprinid JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 955) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023192 BASE COUNT 284 a 252 c 224 g 195 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAGC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCCGU GAGUA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUUA-G- AG-CUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-G ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- --cgcacaau aauaaa--gc -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----gaga gccca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GACG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a--uuaGACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cauac- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA A-AAGGAA(- gcaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcgac-uuaa auauuuaaua ccaacgcgcc gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- UCUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.N.chrys 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Notemigonus chrysoleucas.; . ACCESSION AF023194 KEYWORDS . SOURCE Mitochondrion Notemigonus chrysoleucas. ORGANISM Mitochondrion Notemigonus chrysoleucas. REFERENCE 1 (bases 1 to 953) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) Phylogenetic Relationships of the Creek Chubs and the JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 953) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023194 BASE COUNT 292 a 249 c 224 g 188 t 4260 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UUAGCU -U-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCCGU GAGUA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a aa-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCC-- 1981 AGUUA-AUAA U--------a caCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aagcauggu aauaaa--gc -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaacg -UAC(-GAAA 2401 -)GU|A---- ----acuuua g-----uaaa accca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CGUAAA-CCC 2521 A--GACG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --g(cuac)a a--uuaGACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(aaa- 3181 uaa)------ a-aGUAAGCA AGA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cac--- 3781 ---------A GCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aa---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA A-AAGGAA(- gcaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcagu-aaag uuaccuaaca cuaaagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.N.ather 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Notropis atherinoides.; . ACCESSION AF023195 KEYWORDS . SOURCE Mitochondrion Notropis atherinoides. ORGANISM Mitochondrion Notropis atherinoides. REFERENCE 1 (bases 1 to 955) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Creek Chubs and the Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 955) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023195 BASE COUNT 291 a 252 c 225 g 187 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGCA 661 (UGG-)U-CC C|GACCU-UA CUA-UCAGCU -C-UAGC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCCGU GAGUA---AG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- AGGCAUCA-- 1321 -GGCACAA-- -----(auu- ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCAG-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUUA-G- AG-CUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------au aaCGGC|GUA AAGGGUGGUU -A-ugg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--u -agcgaaa-u aauaaa--gu -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGa-guccG AAG------- ---cccagua -UAC(-GAAA 2401 -)GU|A---- ----acuuua a-----gaaa gccca----- ccu-gaccCC ACGAA-AACU 2461 G-AGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGU- CAUAAA-CCC 2521 A--GACG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --g(cuac)a a--ucaGGCG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC GCUUCUAGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA A-AAGGAA(- gcagc-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgaaau- 4381 gcaau-aaag uuaccuaacg cuaaagcucu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUAA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.N.rubel 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Notropis rubellus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Notropis rubellus. ORGANISM Mitochondrion Notropis rubellus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U09475 DEFINITION Notropis rubellus mitochondrion 12S rRNA and 16S rRNA genes, partial sequence, and tRNA-Val gene, complete sequence. SOURCE rosyface shiner ORGANISM Mitochondrion Notropis rubellus Eukaryotae; Hyperchondria; Eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Actinopterygii; Actinopteri; Holostei; Halecostomi; Teleostei; Elopocephala; Clupeocephala; Euteleostei; Ostariophysi; Otophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Notropis. REFERENCE 1 (bases 1 to 2003) AUTHORS Duvernell,D.D. and Aspinwall,N. TITLE Introgression of Luxilus cornutus mtDNA into allopatric populations of Luxilus chrysocephalus (Teleostei:Cyprinidae) in Missouri and Arkansas JOURNAL Unpublished REFERENCE 2 (bases 1 to 2003) AUTHORS Aspinwall,N. TITLE Direct Submission JOURNAL Submitted (06-MAY-1994) Nevin Aspinwall, Saint Louis University, Biology, 3507 Laclede, St. Louis, MO 63103-2010, USA COMMENT NCBI gi: 488584 FEATURES Location/Qualifiers rRNA <1..469 /product="12S rRNA" tRNA 470..540 /product="tRNA-Val" rRNA 541..>2003 /product="16S rRNA" source 1..2003 /mitochondrion /organism="Notropis rubellus" /isolate="Collection site: Meramec R., Franklin Co., MO, USA" /haplotype="RUBE" /tissue_type="muscle, skeletal" /dev_stage="adult" BASE COUNT 142 a 118 c 114 g 95 t 4744 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- -~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)---- 1261 ---------- ---------- --~~--~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~-~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~a(cuac)a ----auCAGG 2701 C-G|--U|CC G-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 ---------- ----)CGUUA A-ACCUCACC GCUUCUAGCC ---------- ---------- 2881 (--------a uc-)------ ------(--- --)----<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->-------- ---c--cAGC -UA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGC- -----(agu- 3181 aa-)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----acaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UCUA-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- -UA-GAacac 4021 ---------- -----UACGG --ACAUGGCA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGA-UUA 4141 G-U--AGU-- A-AAGGAA(- gcagu-gu-- --)GUCCUUU --GAC----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ------GGCU 4261 CU-AGA-CG- CGUACACA-C -CGC-CGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgaaau- 4381 gcaau-aaag uuaccuaaca ccaaagcucu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C -AGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUAA AAUU-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.O.mic.1 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Orthodon microlepidotus.; . ACCESSION AF0384 8 KEYWORDS . SOURCE Mitochondrion Orthodon microlepidotus. ORGANISM Mitochondrion Orthodon microlepidotus. REFERENCE 1 (bases 1 to 2721) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2721) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038488 BASE COUNT 297 a 249 c 224 g 188 t 4255 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAGC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCCGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu u--------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-cga--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAACAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUUA-G- GG-CCA---a aa-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-G ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aagcaaaac aauaaa--gu -----|CAAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---uccaacu aUAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GAUG-UC |AA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GACA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA GAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --AUACG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgaaau- 4381 gcaau-gaag auaauuaaca cuaaagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.O.mic.2 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Orthodon microlepidotus.; . ACCESSION AF0384 9 KEYWORDS . SOURCE Mitochondrion Orthodon microlepidotus. ORGANISM Mitochondrion Orthodon microlepidotus. REFERENCE 1 (bases 1 to 2721) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2721) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038489 BASE COUNT 296 a 246 c 225 g 191 t 4255 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAGC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gUAGUCCCGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu u--------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-cga--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAACAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUUA-G- GG-UUA---a aa-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-G ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aagcaaaac aauaaa--gu -----|CAAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---uccaacu aUAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GAUG-UC |AA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GACA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA GAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --AUACG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgaaau- 4381 gcaau-gaag auaauuaaca cuaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.catos 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Phenacobius catostomus.; . ACCESSION AF023196 KEYWORDS . SOURCE Mitochondrion Phenacobius catostomus. ORGANISM Mitochondrion Phenacobius catostomus. REFERENCE 1 (bases 1 to 953) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Creek Chubs and the Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 953) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023196 BASE COUNT 293 a 249 c 218 g 193 t 4260 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC C|GACCU-UC CUG-UCAGCU -U-UAGC-CU |AA-UU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCUGU GAGUA---CG C|CCU-Caa- --cc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(ccgcccg -----)---- 1261 ---------- ---------- --gg---u-- --c-AGGAGC |--------- AGGUAUCA-- 1321 -GGCGCAA-- -----(acc- ---------- ---------- ---------- ------)--- 1381 ---UA|---A GCCCA--AGA C|GCCAA-GC --|------- (-aaa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUUAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-C- GG-CUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG C-------gu aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -uaacacaac aauaaa--gu -----|CAAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGa-guccG AAG------- -cccaguuuc -UAC(-GAAA 2401 -)GU|A---- ----acuuua g-----aaga guuua----- ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-UCU 2521 A--GACG-UC |CU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(cuac)a a--uuaGGCG 2701 U-C|--C|G- C-CGGG-UAC UAUGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(aaa- 3181 ua-)------ a-aGUAAGCA AAA-CGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --AUUUG-UA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA A-AAGGAA(- acagc-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gugau-aaag cuaccuaaca agaaagcuaa gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUAA AAC------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.mirab 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Phenacobius mirabilis.; . ACCESSION AF0384 2 KEYWORDS . SOURCE Mitochondrion Phenacobius mirabilis. ORGANISM Mitochondrion Phenacobius mirabilis. REFERENCE 1 (bases 1 to 2705) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2705) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038492 BASE COUNT 298 a 247 c 215 g 198 t 4255 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC C|GACCU-UA CCA-UCAGCU -U-UAGC-CU |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCGGU GAGUG---UG C|CCU-Caa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(ccgcccg -----)---- 1261 ---------- ---------- --gg---a-- --uAAGGAGC |--------- AGGUAUCA-- 1321 -GGCGCAG-- -----(accc cuc------- ---------- ---------- ------)--- 1381 ---CA|---A GCCCA--AGA C|GCCAA-GU --|------- (-aau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-A- AG-CUA---a uaa------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUUA A-------au agCGGC|GUA AAGGGUGGUU -A-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -uaacauaau gauaaa--gu -----|CAAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGa-guccG AAG------- ---cccacua aCAC(-GAAA 2401 -)GU|A---- ----acuuua a-----gcaa gucua----- ucu-gaccCC ACGAA-ACCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-UCU 2521 A--GACG-UC |CU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(uuac)a a--uU-AGGC 2701 G-U|--C|CG C-CGGG-UAC UACGAGC(-- -ACUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- UCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUG A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(uaa- 3181 u-a)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ca---)---- ---------- ---------- UAG-AAuac- 4021 ---------- -----UACGA --AUUUG-UA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- gcagc-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 guaau-aaag cuaccuaaua agaauacuug gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUAA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.neoga 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Phoxinus neogaeus.; . ACCESSION AF0384 3 KEYWORDS . SOURCE Mitochondrion Phoxinus neogaeus. ORGANISM Mitochondrion Phoxinus neogaeus. REFERENCE 1 (bases 1 to 2714) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2714) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038493 BASE COUNT 297 a 244 c 218 g 197 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UUAGCU -C-UAAC-CC |GA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCCGU GAGUA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGUAUCA-- 1321 -GGCACAA-- -----(auuu u--------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUGAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-A- GG-CUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUA-AUGA U-------ac aaCGGC|AUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aagcaauau aauaaa--gu -----|CAAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaca -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gaucCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GACG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- CAG-AAuac- 4021 ---------- -----UACGG --AUAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--AC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- gcaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaauu- 4381 gcaac-aaaa auauuuaaug ccaaagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.eryth 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Phoxinus erythrogaster.; . ACCESSION AF0384 0 KEYWORDS . SOURCE Mitochondrion Phoxinus erythrogaster. ORGANISM Mitochondrion Phoxinus erythrogaster. REFERENCE 1 (bases 1 to 2661) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2661) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038490 BASE COUNT 278 a 236 c 213 g 178 t 4308 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~C 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCCGU GAGUA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGUAUCA-- 1321 -GGCACAA-- -----(acuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--GGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUU| 1561 A|-GUCA-G- GG-CUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUA-ACAA U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -gugcaaaac aauaaa--gc -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaca -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----caaa aucca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GACG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAG-AAuac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- gcagc-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaauu- 4381 gcaau-aaua auauuuaaug ccaaagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.graci 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Platygobio gracilis.; . ACCESSION AF023197 KEYWORDS . SOURCE Mitochondrion Platygobio gracilis. ORGANISM Mitochondrion Platygobio gracilis. REFERENCE 1 (bases 1 to 955) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Creek Chubs and the Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 955) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023197 BASE COUNT 294 a 255 c 222 g 184 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGCA 661 (UGG-)U-CC C|GACCU-UA CUA-UCAGCU -C-UAGC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCCGU GAGUA---AG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(ccgccc- -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- AGGCAUCA-- 1321 -GGCACAA-- -----(accu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCAG-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- AG-CUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------gc aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -uagugaaac aauaaa--gu -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGa-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----gaaa gucca----- ccu-gaccCC ACGAA-AACU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGU- CAUAAA-CCC 2521 A--GACG-UC |CG|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a--uuaGACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAuac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA A-AAGGAA(- gcaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgaaau- 4381 gcaau-aaag cuucuuaaca ccaaagcucu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUAA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.orego 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Ptychocheilus oregonensis.; . ACCESSION AF0384 4 KEYWORDS . SOURCE Mitochondrion Ptychocheilus oregonensis. ORGANISM Mitochondrion Ptychocheilus oregonensis. REFERENCE 1 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2718) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038494 BASE COUNT 294 a 247 c 222 g 191 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -acgca-agc aauaaa--gc -----|CGAA cggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----aaaa gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GAUG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(cuac)a a-uuA-GACA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaag auauuuaaua ccaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.solit 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Relictus solitarius.; . ACCESSION AF0384 6 KEYWORDS . SOURCE Mitochondrion Relictus solitarius. ORGANISM Mitochondrion Relictus solitarius. REFERENCE 1 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Mitochondrial 12S and 16S Ribosomal RNA Sequences Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2717) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038496 BASE COUNT 292 a 243 c 226 g 194 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- --gaguaaac aauaaa--gc -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----gaaa gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CUU 2521 A--GACG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --AUAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaauu- 4381 gcagu-aaaa auacuuaaua auaaagcgcu gacg------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.atrat 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Rhinichthys atratulus.; . ACCESSION AF023198 KEYWORDS . SOURCE Mitochondrion Rhinichthys atratulus. ORGANISM Mitochondrion Rhinichthys atratulus. REFERENCE 1 (bases 1 to 956) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Creek Chubs and the Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 956) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023198 BASE COUNT 291 a 252 c 227 g 186 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCCGU GAGUA---CG C|CCU-Caa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- AGGCAUCA-- 1321 -GGCACAA-- -----(acau ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GACA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -uaauaaauu aauaaa--gu -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGa-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----gaaa gccca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GGCG-UC |GA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a --guuaGACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --AUGUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -C--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA A-AAGGAA(- gcaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaagu- 4381 gcaau-aaag cuaccuaaca ucauagcagu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.bicol 5213 bp RNA RNA 02-JUN-1998 DEFINITION Mitochondrion Siphateles bicolor.; . ACCESSION AF0384 7 KEYWORDS . SOURCE Mitochondrion Siphateles bicolor. ORGANISM Mitochondrion Siphateles bicolor. REFERENCE 1 (bases 1 to 2712) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Western North American Phoxinins (Actinopterygii: Cyprinidae) as Inferred from Mitochondrial 12S and 16S Ribosomal RNA Sequences JOURNAL Mol. Phylogenet. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2712) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038497 BASE COUNT 295 a 249 c 221 g 189 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCUGU GAGUA---CG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUUA-G- GG-UUG---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAA U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -acgca-aac aauaaa--gc -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----gaac gccca----- ccu-gacaCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GAUG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --g(cuac)a a-uuA-GACA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----CACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaag auaucuaaca cnaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.copei 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Snyderichthys copei.; . ACCESSION AF023201 KEYWORDS . SOURCE Mitochondrion Snyderichthys copei. ORGANISM Mitochondrion Snyderichthys copei. REFERENCE 1 (bases 1 to 956) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Creek Chubs and the Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 956) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023201 BASE COUNT 286 a 251 c 229 g 190 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -C-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCCGU GAGUA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUGC U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -gcgcaaaac aauaaa--gc -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------U AGGu-gcccG AAG------- ---cccaaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----gaga gccca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GAUG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --g(cuac)a g--uuaGACA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUCCUAGCC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(aaa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cauaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 G-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAuac- 4021 ---------- -----UACGG --AUAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA A-AAGGAA(- gcaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaac-aaag auaccuaacc cagacgcgcc gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGAUUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.fulgi 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Meda fulgida.; . ACCESSION AF023193 KEYWORDS . SOURCE Mitochondrion Meda fulgida. ORGANISM Mitochondrion Meda fulgida. REFERENCE 1 (bases 1 to 953) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Creek Chubs and the Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 953) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023193 BASE COUNT 280 a 252 c 226 g 195 t 4260 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC U|GACCU-UA UUA-UCAGCU -A-UAAC-CU |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCUGU GAGUA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUG-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GA A-uu---C-A 1501 GCA|GUG-AU AGAUAUUGAG C-UAUAAGC( ---------- ----GAAA)G CUUGA-CUC| 1561 A|-GUCA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-G ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUUC U-------ac aaCGGC|GUA AAGAGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -gcgcauaau aauaaa--gc -----|CGAA cggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGc-gcccG AAG------- ---cccgaua -UAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----uaaa gccca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CGUAAA-CCU 2521 A--GAUG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(cuac)g a----uGACA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cauaa- 3781 ---------C CCAAAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAuac- 4021 ---------- -----UACGG --AUAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-UG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA A-AAGGAA(- gcagc-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUUAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcgau-aaag auacuuaacc cgaacgcgcc gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGACUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.a.atr 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus atremius atremius.; . ACCESSION AB0166 7 KEYWORDS . SOURCE Rhodeus atremius atremius. ORGANISM Rhodeus atremius atremius. REFERENCE 1 (bases 1 to 699) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 699) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016687 BASE COUNT 220 a 179 c 161 g 139 t 4514 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUGG-AUAG U-------au caCGGC|GUA AAGGGUGGUC -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cuuaaacuu gauaaa--gc -----|UAAA UGGCCC-CUC ----GGCC(G 2341 UCAUA)CGCU UC-------u AGGu-gcuaG AGA------- ---cccaa-c auAC(-GAAA 2401 -)GU|G---- ----gcuuua a-----uaaa ccccg----- ccu-gacuCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(guac)a a-auA-ACUG 2701 U-C|--C|GC C-AGGG-CAC UACGAGC(-- -ACCA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAAA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUGGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(aua- 3181 u-a)------ a-aGUAAGCA AAA-UGGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caaac- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ug---)---- ---------- ---------- AAG-AAuac- 4021 ---------- -----UACGA --AUGUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-AG-U--GC -C--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AGGGAA(- caaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-uaac auaccuaaua caaaagcacu gaua------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.a.s.1 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus atremius suigensis.; . ACCESSION AB0166 6 KEYWORDS . SOURCE Rhodeus atremius suigensis. ORGANISM Rhodeus atremius suigensis. REFERENCE 1 (bases 1 to 699) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 699) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016686 BASE COUNT 220 a 177 c 160 g 142 t 4514 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUAG U-------au caCGGC|GUA AAGGGUGGUC -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cuuaaacuu aauaaa--gc -----|UAAA UGGCCC-CUC ----GGCC(G 2341 UCAUA)CGCU UC-------u AGGu-g-cuA GAG------- ---acccgac aUAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----uaac ccccg----- ccu-gacuCC ACGAA-AGCU 2461 G-AGA---GA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a a-auA-ACUG 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -ACUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUGGAC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(gua- 3181 u-a)------ a-aGUAAGCA AAA-UGGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cagac- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ua---)---- ---------- ---------- AAG-AAuac- 4021 ---------- -----UACGA --AUGUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-AG-U--GC -C--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- caaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-uaau auaccuaaua caaaagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.a.s.2 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus atremius suigensis.; . ACCESSION AB0166 8 KEYWORDS . SOURCE Rhodeus atremius suigensis. ORGANISM Rhodeus atremius suigensis. REFERENCE 1 (bases 1 to 700) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 700) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016688 BASE COUNT 219 a 175 c 161 g 145 t 4513 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUAG U-------au caCGGC|GUA AAGGGUGGUC -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cuuaaacuu aauaaa--gc -----|UAAA UGGCCC-CUC ----GGCC(G 2341 UCAUA)CGCU UC-------u AGGu-guuaG AGA------- ---cccaa-u aUAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----uaac ccccg----- ccu-gacuCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a a-cuA-ACUG 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC GCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUGACC ACUUCUGGCC ---------- ---------- 2881 (-------gu cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(aua- 3181 uaa)------ a-aGUAAGCA AAA-UGGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caaac- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ug---)---- ---------- ---------- AAG-AAcac- 4021 ---------- -----UACGA --AUGUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-AG-U--GC -C--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- caaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-uauu auaccuaaug caaaagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.a.s.3 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus atremius suigensis.; . ACCESSION AB0166 9 KEYWORDS . SOURCE Rhodeus atremius suigensis. ORGANISM Rhodeus atremius suigensis. REFERENCE 1 (bases 1 to 699) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 699) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016689 BASE COUNT 219 a 179 c 161 g 140 t 4514 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUGG-AUAG U-------au caCGGC|GUA AAGGGUGGUC -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cuuaaacuu gauaaa--gc -----|UAAA UGGCCC-CUC ----GGCC(G 2341 UCAUA)CGCU UC-------u AGGu-gcuaG AGA------- ---cccaa-c auAC(-GAAA 2401 -)GU|G---- ----gcuuua a-----uaaa ccccg----- ccu-gacuCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(guac)a a-auA-ACUG 2701 U-C|--C|GC C-AGGG-CAC UACGAGC(-- -ACCA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAAA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUGGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(gua- 3181 u-a)------ a-aGUAAGCA AAA-UGGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cagac- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ua---)---- ---------- ---------- AAG-AAuac- 4021 ---------- -----UACGA --AUGUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-AG-U--GC -C--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- caaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-uaau auaccuaaua caaaagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- UCUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.fan.1 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus fangi.; . ACCESSION AB0166 0 KEYWORDS . SOURCE Rhodeus fangi. ORGANISM Rhodeus fangi. REFERENCE 1 (bases 1 to 700) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 700) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016690 BASE COUNT 218 a 177 c 160 g 145 t 4513 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUAG U-------au caCGGC|GUA AAGGGUGGUC -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cuuaaacuu aauaaa--gc -----|UAAA UGGCCC-CUC ----GGCC(G 2341 UCAUA)CGCU UC-------u AGGu-g-cuA GAG------- ---acccgau aUAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----uaac ccccg----- ccu-gacuCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a a-cuA-ACUG 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-UC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUGGCC ---------- ---------- 2881 (-------gu cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(aua- 3181 uaa)------ a-aGUAAGCA AAA-UGGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caaac- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ug---)---- ---------- ---------- AAG-AAcac- 4021 ---------- -----UACGA --AUGUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-AG-U--GC -C--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- caaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-uauu auaccuaaug caaaagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.fan.2 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus fangi.; . ACCESSION AB0166 1 KEYWORDS . SOURCE Rhodeus fangi. ORGANISM Rhodeus fangi. REFERENCE 1 (bases 1 to 700) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 700) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016691 BASE COUNT 218 a 178 c 160 g 144 t 4513 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUAG U-------au caCGGC|GUA AAGGGUGGUC -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cuuaaacuu aauaaa--gc -----|UAAA UGGCCC-CUC ----GGCC(G 2341 UCAUA)CGCU UC-------u AGGu-g-cuA GAG------- ---acccgau aUAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----uaac ccccg----- ccu-gacuCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a a-cuA-ACUG 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUGGCC ---------- ---------- 2881 (-------gu cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(aua- 3181 uaa)------ a-aGUAAGCA AAA-UGGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caaac- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ug---)---- ---------- ---------- AAG-AAcac- 4021 ---------- -----UACGA --AUGUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-AG-U--GC -C--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- caaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 cgaau-uauu auaccuaaug caaaagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.lig.1 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus lighti.; . ACCESSION AB0166 2 KEYWORDS . SOURCE Rhodeus lighti. ORGANISM Rhodeus lighti. REFERENCE 1 (bases 1 to 698) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 698) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016692 BASE COUNT 216 a 176 c 168 g 138 t 4515 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-ACGG U-------gg uaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -caacaa-uu aauaaa--gc -----|UGAA UAGCCC-CCC ----AGCC(G 2341 UCAUA)CGCU UC-------u GGGc-gcuaG AAA------- ---cccaa-c auGC(-GAAA 2401 -)gu|g---- ----gcuuua ------auag ccucg----- ccu-gaacCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- UGUAAA-CCU 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a g-ccA-CAUG 2701 U-C|--c-GC C-aGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAUGGA-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAAUCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUGGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(uaa- 3181 uaa)------ g-aGUAAGCA AAA-UGGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caaaa- 3781 ---------U CCAAAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 G-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ag---)---- ---------- ---------- CAG-AAuac- 4021 ---------- -----UACGG --ACGCG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -C--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- aaaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgaaau- 4381 gcaau-auag auaacuaaug ccaacgcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.lig.2 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus lighti.; . ACCESSION AB0166 3 KEYWORDS . SOURCE Rhodeus lighti. ORGANISM Rhodeus lighti. REFERENCE 1 (bases 1 to 699) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 699) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016693 BASE COUNT 226 a 179 c 160 g 134 t 4514 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUAG U-------gc caCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aaauaacua aauaaa--gc -----|UGAU CAGCCC-CUC ----GGCC(G 2341 UCAUA)CGCU UC-------u AGGu-gcuaG AAA------- ---accaa-a gUAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----uaac cccca----- ccu-gaacCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AAC- UGUAAA-CCC 2521 A--GACA-UU |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --g(auac)a g-ccA-CAUG 2701 U-C|--C|GC C-AGGG-UAC UACAAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAAUCC 2821 C--------- ----)CGUUA A-ACCUCACC ACCUCUGGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(aaa- 3181 ua-)------ u-aGUAAGCA AAA-UGGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caaaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 A-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ac---)---- ---------- ---------- CAG-AAuac- 4021 ---------- -----UACGG --ACGCG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -C--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- agaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaac-aaaa auauuuaauc caagagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.lig.3 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus lighti.; . ACCESSION AB0166 4 KEYWORDS . SOURCE Rhodeus lighti. ORGANISM Rhodeus lighti. REFERENCE 1 (bases 1 to 698) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 698) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016694 BASE COUNT 215 a 177 c 169 g 137 t 4515 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGG|--- -GGC-CCC-- 1981 AGUUG-ACAG U-------ag uaCGGC|GUA AAGGGUGGUU -A-ggg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -caacaa-uu aauaaa--gc -----|UGAA UAGCCC-CCC ----GGCC(G 2341 UCAUA)CGCU UC-------u GGGc-gcugG AAA------- ---cccaac- auGC(-GAAA 2401 -)GU|A---- ----gcuuua ------auag ccuca----- ccu-gaacCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- UGUAAA-CCU 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a g-ccA-CAUG 2701 U-C|--c-GC C-aGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAAUCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUGGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(uaa- 3181 uaa)------ g-aGUAAGCA AAA-UGGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caaaa- 3781 ---------U CCAAAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 G-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ag---)---- ---------- ---------- CAG-AAuac- 4021 ---------- -----UACGG --ACGCG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -C--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- gaaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgaaau- 4381 gcaau-auag auaacuaaug ccaacgcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.notat 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus notatus.; . ACCESSION AB0166 5 KEYWORDS . SOURCE Rhodeus notatus. ORGANISM Rhodeus notatus. REFERENCE 1 (bases 1 to 700) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 700) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016695 BASE COUNT 219 a 177 c 160 g 144 t 4513 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUAG U-------au caCGGC|GUA AAGGGUGGUC -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cuuaaacuu aauaaa--gc -----|UAAA UGGCCC-CUC ----GGCC(G 2341 UCAUA)CGCU UC-------u AGGu-gcuaG AGA------- ---cccaa-u aUAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----uaac ccccg----- ccu-gacuCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a a-cuA-ACUG 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUGGCC ---------- ---------- 2881 (-------gu cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(aua- 3181 uaa)------ a-aGUAAGCA AAA-UGGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caaac- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ug---)---- ---------- ---------- AAG-AAcac- 4021 ---------- -----UACGA --AUGUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-AG-U--GC -C--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- caaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCGUGCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-uauu auaccuaaug caaaagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.oce.k 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus ocellatus kurumeus.; . ACCESSION AB0166 6 KEYWORDS . SOURCE Rhodeus ocellatus kurumeus. ORGANISM Rhodeus ocellatus kurumeus. REFERENCE 1 (bases 1 to 700) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 700) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016696 BASE COUNT 218 a 177 c 160 g 145 t 4513 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUGA U-------au ugCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cugcaaccu aauaaa--gc -----|UGAA UAGCCC-UCC ----GGCC(G 2341 UCAUA)CGCU UC-------c AGGc-gcuaG AAA------- ---cccaauc aAAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----ugaa auuca----- ccu-gaccCC ACGAA-AGCU 2461 A-AGA---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCC 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a a--cA-CAUG 2701 U-C|--c-GC C-AGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAGGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUAGUC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(ca-- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cauaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ca---)---- ---------- ---------- CAG-AAcac- 4021 ---------- -----UACGA --AUACG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- agaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaauuaaau auuccuaaug cuagagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.o.o.1 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus ocellatus ocellatus.; . ACCESSION AB0166 7 KEYWORDS . SOURCE Rhodeus ocellatus ocellatus. ORGANISM Rhodeus ocellatus ocellatus. REFERENCE 1 (bases 1 to 701) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 701) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016697 BASE COUNT 218 a 175 c 162 g 146 t 4512 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUGG U-------au ugCGGC|GUA AAGGGUGGUU -A-ggg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cuguaaccu aauaaa--gc -----|UGAA UAGCCC-UCC ----GGCC(G 2341 UCAUA)CGCU UC-------c AGGc-gcuaG AAA------- ---cccaauu aAAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----uaaa auuca----- ccu-gaccCC ACGAG-AGCU 2461 A-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCC 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a a--cA-CAUG 2701 U-C|--c-GC C-AGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUAGUC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ g-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cauaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ua---)---- ---------- ---------- CAG-AAcac- 4021 ---------- -----UACGA --AUACG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- agaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaauuaaau auuccuaaug cuagagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.o.o.2 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus ocellatus ocellatus.; . ACCESSION AB0166 8 KEYWORDS . SOURCE Rhodeus ocellatus ocellatus. ORGANISM Rhodeus ocellatus ocellatus. REFERENCE 1 (bases 1 to 701) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 701) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016698 BASE COUNT 218 a 176 c 161 g 146 t 4512 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUGG U-------au ugCCGC|GUA AAGGGUGGUU -A-ggg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cuguaaccu aauaaa--gc -----|UGAA UAGCCC-UCC ----GGCC(G 2341 UCAUA)CGCU UC-------c AGGc-gcuaG AAA------- ---cccaauu aAAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----uaaa auuca----- ccu-gaccCC ACGAG-AGCU 2461 A-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCC 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a a--cA-CAUG 2701 U-C|--c-GC C-AGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUAGUC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ g-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cauaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ua---)---- ---------- ---------- CAG-AAcac- 4021 ---------- -----UACGA --AUACG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- agaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaauuaaau auuccuaaug cuagagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.o.o.3 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus ocellatus ocellatus.; . ACCESSION AB0166 9 KEYWORDS . SOURCE Rhodeus ocellatus ocellatus. ORGANISM Rhodeus ocellatus ocellatus. REFERENCE 1 (bases 1 to 701) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 701) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016699 BASE COUNT 218 a 174 c 162 g 147 t 4512 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUGG U-------au ugCGGU|GUA AAGGGUGGUU -A-ggg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cuguaaccu aauaaa--gc -----|UGAA UAGCCC-UCC ----GGCC(G 2341 UCAUA)CGCU UC-------c AGGc-gcuaG AAA------- ---cccaauu aAAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----uaaa auuca----- ccu-gaccCC ACGAG-AGCU 2461 A-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCC 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a a--cA-CAUG 2701 U-C|--c-GC C-AGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUAGUC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 uaa)------ g-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cauaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ua---)---- ---------- ---------- CAG-AAcac- 4021 ---------- -----UACGA --AUACG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- agaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaauuaaau auuccuaaug cuagagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.s.a.1 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus sericeus amarus.; . ACCESSION AB0167 0 KEYWORDS . SOURCE Rhodeus sericeus amarus. ORGANISM Rhodeus sericeus amarus. REFERENCE 1 (bases 1 to 697) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 697) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016700 BASE COUNT 215 a 181 c 160 g 141 t 4516 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-ACAG U-------ac ugCGGC|GUA AAGGGUGGUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------c--- -cugcaacuu aauaaa--ga -----|UAAA UAGUCC-CCC ----GGCC(G 2341 UCAUA)CGCU UC-------u AGGc-gcuaG AAA------- ---cccaa-u aUAC(-GAAA 2401 -)GU|A---- ----gcuuua g------cau caccg----- ccu-gaccCC ACGAA-AGCU 2461 G-AGg---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GACA-UU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(auac)a a--cA-CAUG 2701 U-C|--c-GC C-AGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-- 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUGGUC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|C-GU UAC-|CCU(G --UGA)AGG- -----(uaa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ug---)---- ---------- ---------- CAG-AAcac- 4021 ---------- -----UACGG --AUGCG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- aaaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-caau auacguaauu ccacagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.s.a.2 5213 bp RNA RNA 08-JAN-1999 DEFINITION Rhodeus sericeus amarus.; . ACCESSION AB0167 1 KEYWORDS . SOURCE Rhodeus sericeus amarus. ORGANISM Rhodeus sericeus amarus. REFERENCE 1 (bases 1 to 697) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 697) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016701 BASE COUNT 214 a 182 c 160 g 141 t 4516 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-ACAG U-------ac ugCGGC|GUA AAGGGUGGUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------c--- -cugcaacuu aauaaa--gc -----|UAAA UAGUCC-CCC ----GGCC(G 2341 UCAUA)CGCU UC-------u AGGc-gcuaG AAA------- ---cccaa-u aUAC(-GAAA 2401 -)GU|A---- ----gcuuua g------cau caccg----- ccu-gaccCC ACGAA-AGCU 2461 G-AGg---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GACA-UU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(auac)a a--cA-CAUG 2701 U-C|--c-GC C-AGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-- 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUGGUC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(uaa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ug---)---- ---------- ---------- CAG-AAcac- 4021 ---------- -----UACGG --AUGCG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- aaaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-caau auacguaauu ccacagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.atrom 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Semotilus atromaculatus.; . ACCESSION AF023199 KEYWORDS . SOURCE Mitochondrion Semotilus atromaculatus. ORGANISM Mitochondrion Semotilus atromaculatus. REFERENCE 1 (bases 1 to 955) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Phylogenetic Relationships of the Creek Chubs and the Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 955) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023199 BASE COUNT 281 a 242 c 225 g 207 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGCA 661 (UGG-)U-CC C|GACCU-UA UUA-UCAGCU -U-UAAC-CC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCUGU GAGUA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGUAUCA-- 1321 -GGCACAA-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUA-GC --|------- (-cuu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GUUA-G- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG U-------ac aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- ---ugaacaa aauaaa--gc -----|CGAA uggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-gccuG AAG------- ---cccaaca -UAC(-GAAA 2401 -)GU|C---- ----gcuuua a-----agua gccua----- ccu-gaucCC ACGAA-AACU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGU- CGUAAA-CUU 2521 A--GACG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a--uuaGACG 2701 U-U|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUGGCC ---------- ---------- 2881 (-------cc cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -C-C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(uaa- 3181 uag)------ a-aGUAAGCA GAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAAAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --ACAUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA A-AAGGAA(- gcagc-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CUC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucuaaau- 4381 gcaau-auaa auacuuaaua ucacugcgcu gacg------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GU- ACUUGGACUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.thore 5213 bp RNA RNA 20-OCT-1997 DEFINITION Mitochondrion Semotilus thoreauianus.; . ACCESSION AF023200 KEYWORDS . SOURCE Mitochondrion Semotilus thoreauianus. ORGANISM Mitochondrion Semotilus thoreauianus. REFERENCE 1 (bases 1 to 954) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Spine-Fins: an Enigmatic Group of North American Cyprinid Fishes (Actinopterygii: Cyprinidae) Phylogenetic Relationships of the Creek Chubs and the JOURNAL Cladistics 13 (3) (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 954) AUTHORS Simons,A.M. and Mayden,R.L. TITLE Direct Submission JOURNAL Submitted (08-SEP-1997) Department of Biological Sciences, The University of Alabama, Box 870344, Tuscaloosa, AL 35487-0344, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF023200 BASE COUNT 283 a 242 c 221 g 208 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCA 661 (UGG-)U-CC C|GUCCU-UA UUA-UCAGCU -C-UAAC-CC |GA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCUGU GAGUA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGUAUCA-- 1321 -GGCACAA-- -----(auu- ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|ACCUA-GC --|------- (-cuu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)G CUUGA-CUU| 1561 A|-GUCA-A- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUAG U-------au aaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- ---ugcacga aauaaa--gc -----|CAAA aggcCC-UUU ----GGCU(G 2341 UCAUA)CGCU UC-------u AGGu-gccuG AAG------- ---cccaaca -UAC(-GAAA 2401 -)GU|C---- ----gcuuua a-----aaua gccug----- ccu-gaccCC ACGAA-AACU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGU- UGUAAA-CUU 2521 A--GACG-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a--uuaGACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAAUCC 2821 U--------- ----)CGUUA A-ACCUCACC ACUUCUGGCC ---------- ---------- 2881 (-------cc uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -C-C---AGC CUG-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(uaa- 3181 uaa)------ a-aGUAAUCA AAA-UGGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cauag- 3781 ---------C CCAAGA-CGU C-AGGUCAAG G|UGUA|GCG UAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGG --AUCUG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-u--AGUAA A-AAGGAA(- gcagc-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucuuaau- 4381 gcaau-auaa auacuuaaua ccaacgcgcu gacg------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GU- ACUUGGACUA AAU------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.himan 5213 bp RNA RNA 08-JAN-1999 DEFINITION Tanakia himantegus.; . ACCESSION AB0167 2 KEYWORDS . SOURCE Tanakia himantegus. ORGANISM Tanakia himantegus. REFERENCE 1 (bases 1 to 698) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 698) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016702 BASE COUNT 225 a 176 c 154 g 143 t 4515 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCU-- 1981 AGUUA-AUAG U-------au uaCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -guuacaucc aauaaa--gc -----|CAAA UAGCCC-UCU ----GGCC(G 2341 UCAUA)CGCU UC-------c AGGc-gcuaG AAA------- --uccaaauu acAC(-GAAA 2401 -)GU|A---- ----gcuuua ------auaa uauua----- ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CGUAUA-CCC 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --g(acac)a --ucA-CAUG 2701 U-C|--c-GC C-AGGG-UAC UACAAGC(-- -AUUA--)GC UUA--AAACC CAAAGGA--C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUCCUGGUC ---------- ---------- 2881 (-------ac cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(uaa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAAAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 G-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ua---)---- ---------- ---------- CAG-AAcac- 4021 ---------- -----UACGA --AUACG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- aaaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaac-aaac auauuuaaua ccaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.lan.1 5213 bp RNA RNA 08-JAN-1999 DEFINITION Tanakia lanceolata.; . ACCESSION AB0167 3 KEYWORDS . SOURCE Tanakia lanceolata. ORGANISM Tanakia lanceolata. REFERENCE 1 (bases 1 to 698) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 698) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016703 BASE COUNT 214 a 185 c 164 g 135 t 4515 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUAA U-------ac cgCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cuccaa-cc aauaaa--gc -----|UAAA UAGCCC-UCC ----GGCC(G 2341 UCAUA)CGCU UC-------c AGGc-gcuaG AGA------- ---cccaauu uUAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----uaac acuca----- ccu-gaccCC ACGAA-AGCU 2461 A-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGU- CAUAAA-CCC 2521 A--GACA-UC |GA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a a-uuG-UAUG 2701 U-C|--C|GC C-AGGG-CAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-- 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-C |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUGGUC ---------- ---------- 2881 (-------uc cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)GGG- -----(aaa- 3181 -ca)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 A-A-GU-GG- GA-AGA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u cg---)---- ---------- ---------- CAG-AAuac- 4021 ---------- -----UACGA --AUGCG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-A--AGUAA A-AAGGAA(- gaaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaac-aaac uuaccuaacc acaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.lan.2 5213 bp RNA RNA 08-JAN-1999 DEFINITION Tanakia lanceolata.; . ACCESSION AB0167 4 KEYWORDS . SOURCE Tanakia lanceolata. ORGANISM Tanakia lanceolata. REFERENCE 1 (bases 1 to 699) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 699) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016704 BASE COUNT 211 a 191 c 166 g 131 t 4514 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUAA U-------ac cgCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cuccaa-cc aauaaa--gc -----|UAAA UAGCCC-CCC ----GGCC(G 2341 UCAUA)CGCU UC-------c AGGc-gcuaG AGA------- ---cccaauu cCAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----uaac acuca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GACA-UC |GA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(guac)a a-uuG-UGUG 2701 U-C|--C|GC C-AGGG-CAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-C |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUGGUC ---------- ---------- 2881 (-------uc cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)GGG- -----(aaa- 3181 -ca)------ a-aGUAAGCA AAA-aGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 A-A-GU-GG- GA-AGA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u cg---)---- ---------- ---------- CAG-AAuac- 4021 ---------- -----UACGA --AUGCG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- caaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaac uuaccuaacc acaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.lan.3 5213 bp RNA RNA 08-JAN-1999 DEFINITION Tanakia lanceolata.; . ACCESSION AB0167 5 KEYWORDS . SOURCE Tanakia lanceolata. ORGANISM Tanakia lanceolata. REFERENCE 1 (bases 1 to 699) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 699) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016705 BASE COUNT 212 a 187 c 165 g 135 t 4514 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUAA U-------ac cgCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cuccaa-cc aauaaa--gc -----|UAAA UAGCCC-CCC ----GGCC(G 2341 UCAUA)CGCU UC-------c GGGc-gcuaG AGA------- ---cccaauu gCAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----uaau acuca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GACA-UC |GA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a a-uuG-UAUG 2701 U-C|--C|GC C-AGGG-CAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-C |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUU A-ACCUCACC ACUUCUGGUC ---------- ---------- 2881 (-------uc cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(aaa- 3181 -ca)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 A-A-GU-GG- GA-AGA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ca---)---- ---------- ---------- UAG-AAuac- 4021 ---------- -----UACGA --AUGCG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- gaaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaac uuaccuaacc acaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.limba 5213 bp RNA RNA 08-JAN-1999 DEFINITION Tanakia limbata.; . ACCESSION AB0167 6 KEYWORDS . SOURCE Tanakia limbata. ORGANISM Tanakia limbata. REFERENCE 1 (bases 1 to 701) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 701) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016706 BASE COUNT 217 a 181 c 164 g 139 t 4512 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUAA U-------au cgCGGC|GUA AAGGGUGGUC -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cugcaaccu aauaaa--gc -----|GAAA UAGCCC-UCC ----GGCC(G 2341 UCAUA)CGCU UC-------c AGGc-gcuaG AAA------- ---cccaauu aCAC(-GAAG 2401 -)GU|A---- ----gcuuua g-----caau auuca----- ccu-gacuCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CCC 2521 A--GACA-UC |AA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(auac)a g-uuA-UAUG 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUGGUC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(aaa- 3181 gca)------ g-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAAAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ug---)---- ---------- ---------- CAG-AAcac- 4021 ---------- -----UACGG --AUGCG-UA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- gcaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aaau uuaccuaauc acaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.signi 5213 bp RNA RNA 08-JAN-1999 DEFINITION Tanakia signifer.; . ACCESSION AB0167 7 KEYWORDS . SOURCE Tanakia signifer. ORGANISM Tanakia signifer. REFERENCE 1 (bases 1 to 699) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 699) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016707 BASE COUNT 218 a 181 c 163 g 137 t 4514 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUUG U-------au cgCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -cugcaa-cc aauaaa--gc -----|CAAA UAGCCC-UCC ----GGCC(G 2341 UCAUA)CGCU UC-------c AGGc-gcuaG AGA------- ---cccaauu aCAC(-GAAG 2401 -)GU|A---- ----gcuuua a-----uuau auaca----- ccu-gacuCC ACGAA-AGCU 2461 G-AGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GACA-UU |AA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(guac)a g-auA-UAUG 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -AUUA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUGGAC ---------- ---------- 2881 (-------cu cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(aaa- 3181 -ca)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ua---)---- ---------- ---------- CAG-AAcac- 4021 ---------- -----UACGA --AUACG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- aaaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucgauau- 4381 gcaaa-aaac uuaucuaaac acaaagcgcu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.tanag 5213 bp RNA RNA 08-JAN-1999 DEFINITION Tanakia tanago.; . ACCESSION AB0167 8 KEYWORDS . SOURCE Tanakia tanago. ORGANISM Tanakia tanago. REFERENCE 1 (bases 1 to 702) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 702) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016708 BASE COUNT 223 a 174 c 157 g 148 t 4511 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUAA U-------au caCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -uugaaauuu aauaaa--gu -----|CCAA AUAGCC-UUC ----GGCC(G 2341 UCAUA)CGCU UC-------u AGGu-guuaG AAA------- --cccaaucu gcAC(-GAAA 2401 -)GU|A---- ----gcuuua g-----cuau aucca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCC 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(guac)a a-ucA-CAUG 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -AUUA--)GC UUA--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUGGUC ---------- ---------- 2881 (-------au uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(uaa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ua---)---- ---------- ---------- CAG-AAcac- 4021 ---------- -----UACGA --AUACG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- aaaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaau- 4381 gcaau-aagc auauuuaaua ccaaagcgcc gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.Z.platy 5213 bp RNA RNA 08-JAN-1999 DEFINITION Zacco platypus.; . ACCESSION AB0167 9 KEYWORDS . SOURCE Zacco platypus. ORGANISM Zacco platypus. REFERENCE 1 (bases 1 to 700) AUTHORS Okazaki,M. TITLE Phylogenetic relationships of Acheilognathinae (Cyprinidae) JOURNAL Published Only in DataBase (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 700) AUTHORS Okazaki,M. TITLE Direct Submission JOURNAL Submitted (01-AUG-1998) to the DDBJ/EMBL/GenBank databases. Masahiro Okazaki, University of Tokyo, Depertment of Biological Sciences, Graduate School of Science; Hongo 7-3-1, Bunkyo-ku, Tokyo 113, Japan (E-mail: ss87193@Hongo.ecc.u-tokyo.ac.jp, Tel: 03-3812-2111) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB016709 BASE COUNT 216 a 185 c 164 g 135 t 4513 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~C -GGU-UA)-U ACGAGA|--- -GGC-CCC-- 1981 AGUUG-AUAA C-------ac caCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -gagcagcau gauaaa--gc -----|cgAA uggcCC-UUU ----GGCC(G 2341 UCAUA)CGCU UC-------u AGGu-guccG AAG------- ---cccaauc aCAC(-GAAA 2401 -)GU|A---- ----gcuuua a-----uaaa gccca----- ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CAUAAA-CCU 2521 A--GACA-UC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a a-uuA-GACG 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -AUCA--)GC UUG--AAACC CAAAGGAC-C 2761 UG|ACGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(uaa- 3181 uaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcac- 4021 ---------- -----UACGA --AUACG-CA ACA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- acaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gucaaaac- 4381 gcaau-gaag auuccuaacg ccaaagcacu gaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGG---- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (20)-Homal 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.C.lacus 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Crossostoma lacustre. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Crossostoma lacustre. ORGANISM Mitochondrion Crossostoma lacustre. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M91245 DEFINITION Crossostoma lacustre mitochondrion, complete genome. SOURCE Mitochondrion Crossostoma lacustre (chromosome Mitochondrion Crossostoma lacustre) female DNA. ORGANISM Mitochondrion Crossostoma lacustre Eukaryota; Animalia; Chordata; Vertebrata; Osteichthyes; Actinopterygii; Cypriniformes; Cyprioidei; Homalopteridae. REFERENCE 1 (bases 1 to 16558) AUTHORS Tzeng,C.-S., Shen,S.-C. and Huang,P.-C. TITLE Mitochondrial DNA identity of Crossostoma (Homalopteridae, Pisces) from two river systems of the same geographical origin JOURNAL Bull. Inst. Zool. Acad. Sin. 29, 11-19 (1990) REFERENCE 2 (bases 1 to 16558) AUTHORS Tzeng,C.-S., Hui,C.-F., Shen,S.-C. and Huang,P.-C. TITLE The complete nucleotide sequence of the Crossostoma lacustre mitochondrial genome: Conservation and variations among vertebrates JOURNAL Nucleic Acids Res. 20, 4853-4858 (1992) FEATURES Location/Qualifiers D-loop 1..896 tRNA 898..967 /note="anticodon unspecified" rRNA 968..1918 /product="12S ribosomal RNA" /note="putative" tRNA 1919..1990 /note="anticodon location unspecified; amino acid = Val" rRNA 1991..3670 /product="16S ribosomal RNA" tRNA 3671..3744 /note="anticodon location unspecified; amino acid = Leu (UUC)" /note="putative" tRNA 4728..4801 /note="anticodon location unspecified; amino acid = Ile" /note="putative" tRNA complement(4799..4869) /note="anticodon location unspecified; amino acid = Gln" /note="putative" tRNA 4871..4939 /note="anticodon location unspecified; amino acid = Met" /note="putative" tRNA 5985..6055 /note="anticodon location unspecified; amino acid = Trp" /note="putative" tRNA complement(6058..6126) /note="anticodon location unspecified; amino acid = Ala" /note="putative" tRNA complement(6128..6200) /note="anticodon location unspecified; amino acid = Asn" /note="putative" tRNA complement(6231..6298) /note="anticodon location unspecified; amino acid = Cys" /note="putative" tRNA complement(6298..6365) /note="anticodon location unspecified; amino acid = Tyr" /note="putative" tRNA complement(7920..7988) /note="anticodon location unspecified; amino acid = Ser" /note="putative" tRNA 7992..8064 /note="anticodon location unspecified; amino acid = Asp" /note="putative" tRNA 8769..8844 /note="anticodon location unspecified; amino acid = Lys" /note="putative" tRNA 10472..10543 /note="anticodon location unspecified; amino acid = Gly" /note="putative" tRNA 10893..10962 /note="anticodon location unspecified; amino acid = Arg" /note="putative" tRNA 12634..12704 /note="anticodon location unspecified; amino acid = His" /note="putative" tRNA 12704..12773 /note="anticodon location unspecified; amino acid = Ser" /note="putative" tRNA 12774..12846 /note="anticodon location unspecified; amino acid = Leu" /note="putative" tRNA complement(15205..15271) /note="anticodon location unspecified; amino acid = Glu" /note="putative" tRNA 16419..16490 /note="anticodon location unspecified; amino acid = Thr" /note="putative" tRNA complement(16489..16558) /note="anticodon location unspecified; amino acid = Pro" /note="putative" CDS 3746..4720 /note="putative" /product="NADH dehydrogenase subunit 1" /codon_start=1 /translation="MLNTLLTHLINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPN IVGPYGLLQPIADGVKLFIKEPIRPSTASPTLFLVTPMLALTLAMTLWAPMPMPHPII DLNLGVLFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILRSII IFWGGYTVQTFNTTQEALWLLLPACPLAAMWYISTLAETNRAPFDLTEGESELAPGFN VEYAGGPFALLFLAEYANILLMNTLSAILFLGASHMPAIPELTTINLMTKAALLSVVF LWVRASYPRFRYDQLMHLVWKNFLPLTLALVLWHTALPIAFAGLPPQL" CDS 4940..5986 /note="putative" /product="NADH dehydrogenase subunit 2" /codon_start=1 /translation="MNPYVLMILISSLGLGTTLTFASSHWLLAWMGLEINTLAILRLM AQQHHPRAVEATTKYFLTQATAAAMILFAATTNAWATGEWDINNLTHPLASSLTMMAL ALKVGLAPMHFWMPEVLQGLDLTMGLILSTWQKLAPFALITQMAPNTNPMLLTTLGLL STLIGGWGGLNQTQLRKILAYSSIAHMGWMIIILQYTPQLTLIALGLYIFMTSAAFLS LKMASATKMNTLTAAWSKSPVLVSTTALTLLSLGGLPPLTGFMPKWLILQELTKQDLP ATATIMALAALLSLYFYLRLSYAMALTIYPNTTNALTPWRTNTTQSTLALALMMIGAL GLLPLTPTIMALFF" CDS 6367..7917 /note="putative" /product="cytochrome c oxidase subunit I" /codon_start=1 /translation="MAITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELNQP GALLGDDQIYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMIGAPHMAFPRMNNMSF WLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILG AINFITTTINMKPPALSQYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTT FFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVVAYYAGKKEPFGYMGMVWA MMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGTIKW DTPMLWALGFIFLFTVGGLTGIVLSNSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAG FVHWFPLFTGFSLHDTWTKIHFGVMFIGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLW NTVSSIGSLISLVAVIIFLFILWEAFASKRQVMSVELTMTNVEWLHGCPPPYHTFEEP AFVQVRSN" CDS 8078..8768 /note="putative" /product="cytochrome c oxidase subunit II" /codon_start=1 /translation="MAHPTQLGFQDAASPVMEELLHFHDHALMIVFLISALVLYVIIT TVSTKLTNMYILDSQEIEIVWTVLPALILILIALPSLRILYLMDEINDPHLTIKAMGH QWYWSYEYTDYENLSFDSYMIPTQDLTPGQFRLLETDHRMVVPMESPIRILVSAEDVL HSWALPAMGVKMDAVPGRLNQTAFIASRPGVFYGQCSEICGANHSFMPIVVEAVPLSH FENWSTLMLKDA" CDS 8846..9013 /note="putative" /product="ATPase 8" /codon_start=1 /translation="MPQLNPAPWFTILVFSWMIFLAIIPTKVMGHTSPNDSSPLSTEK HKTESWDWPWQ" CDS 9004..9687 /note="putative" /product="ATPase 6" /codon_start=1 /translation="MAMSFFDQFASPSYLGIPLIAIAIALPWVLFPLPSLRWVNNRLI TIQGWLINRFTNQLMLPLNTGGHKWALLLASLMVFLITINMLGLLPYTFTPTTQLSLN MGLAIPLWLATVIIGLRNQPTVALGDLLPEGTPLPLIPVLIIIETISLFIRPLALGVR LTANLTAGHLLIQLIATAVFVLLPMMPTVAILTATVLFLLTLLEVAVAMIQAYVFVLL LSLYLQENV" CDS 9687..10472 /note="putative" /product="cytochrome c oxidase III" /codon_start=1 /translation="MAHQAHAYHMVDPSPWPLTGAIRALFLTSGLAIWFHFQSVTLLT LGLILLLLTMYQWWRDIIREGTFQGHHTPPVQKGLRYGMILFITSEVFFFLGFFWAFY HSSLAPTPELGGCWPPTGITPLDPFEVPLLNTAVLLASGVTVTWAHHSLMEGARKQAI QALALTIILGVYFTALQAMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSSFLAVC LLRQIQYHFTSEHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS" CDS 10544..10894 /note="putative" /product="NADH dehydrogenase subunit 3" /codon_start=1 /translation="MNLVISILAITIILSSILAVVSFWLPQMNPDAEKLSPYECGFDP LGSARLPFSIRFFLVAILFLLFDLEIALLLALPWGDQLYSATGTFFWATAVLILLTLG LIYEWTQGGLEWAE" CDS 10963..11259 /note="putative" /product="NADH dehydrogenase subunit 4L" /codon_start=1 /translation="MTPVHFSFTSAFILGLMGLAFYRTHLLSALLCLEGMMLSLFIAL ALWALQFESTGFSTAPMLLLAFSACEASAGPGLLVATARTHGTDRLQNLNLLQC" CDS 11253..12635 /note="putative" /product="NADH dehydrogenase subunit 4" /codon_start=1 /translation="MLKVLIPTIMLFPTIWLTPPKWLWSTTTAHGLLIALISLTWLKW SSEVGSATSSLYLASDPLSTPLLGLTCWLLPLMVLASQNHITPEPIIRQRLYITLLAS LQTFLIMAFGATEIIMFYIMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLP LLVALLLLQQTNGTLSLLILQHSQPLALTSWGHKIWWAGCLIAFLVKMPLYGVHLWLP KAHVEAPVAGSMVLAAVLLKLGGYGMMRMMVVLDPLSKELAYPFIILALWGIIMTGSI CLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGAIILMIAHGLVSSALFCLANTA YERTHSRTMILARGLQMIFPLTAVWWFIANLANLALPPLPNLMGELMIITTLFNWSPL TIILTGTGTLITAGYSLYLFLMSQRGPTPKHIVGLPPFHTREHLLMALHLIPVLLLMT KPEIMWGWCY" CDS 12847..14683 /note="putative" /product="NADH dehydrogenase subunit 5" /codon_start=1 /translation="MHPTPLILSSSLLLVIIILIYPVLTSLNPNPQNPKWATSHVKTA VSSAFLISLLPLAVFLDQGTETIVTNWHWMNTTMFDINISFKFDYYSLVFTPIALYVT WSILEFASWYMHADPYVNRFFKYLLTFLIAMITLVTANNMFQLFIGWEGVGIMSFLLI GWWYGRADANTAALQAWIYNRVGDIGLIMSMAWLAMNLNSWEIQQIFFLSKDFDMTLP LMGLILAATGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRLHAIMENN QLALTTCLCLGALTSLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLH ICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLQNLLPFTSTCLTIGSLALTGTPFL AGFFSKDAIIEAMNTSYLNAWALTLTLIATSFTAVYSFRVVFFVSMGTPRFLPLSPIN ENNPAVINPIKRLAWGSIIAGLIITSNLLPSKSPVMTMPPTLKMAALMVTAIGLFTAM ELATLTSKQYKTNPITQTHHFSNMLGFFPSVVHRLMKKLNLTLGQLAATQMVDQTWFE AAGPKGASSTQIKMAKITSDTQRGMIKTYLTIFLLTTALATRLATI" CDS complement(14682..15203) /note="putative" /product="NADH dehydrogenase subunit 6" /codon_start=1 /translation="MTYLVSLLLMALIVGLIAVASNPAPYFAALGLVVAAGVGCGVLV SHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPFPEAWGDRSVVGYVMIYLLGVGLMV GVFWEGWYEGSWVVIDGLKEFSVLRGDTSGVAEMYSYGGGMLVICAWVLLLTLFVVLE LTRGLSRGTIRAV" CDS 15278..16418 /note="putative" /product="cytochrome b" /codon_start=1 /translation="MASLRKTHPLIKIANDALVDLPAPSNISVWWNFGSLLGLCLITQ ILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNIHANGASFFFICLYLHIARGL YYGSYLYKETWNIGVVLFLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDML VQWIWGGFSVDNATLTRFFAFHFLFPFIVAAVTILHLLFLHETGSNNPAGLNSDADKI SFHPYFSYKDLLGFVVMLLGLTTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLF AYAILRSIPNKLGGVLALLFSILVLMVVPVLHTSKQRGLTFRPATQFLFWTLVADMII LTWIGGMPVEHPYIIIGQIASILYFALFLILIPLAGWLENKALEWV" BASE COUNT 292 a 245 c 222 g 192 t 4262 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGCU 661 (UGG-)U-CC U|GACUU-UA CUA-UCAGCC -G-UAGC-AC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCCGU GAGGA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(u-gcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- GGGCAUCA-- 1321 -GGCUCAA-- -----(uuau ---------- ---------- ---------- ------)--- 1381 ---UU|---A GCCCA--AGA C|GCCUU-GC --|------- (-cac--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAcu---C-A 1501 GCA|GUG-AU AAAAAUUAAG C-CAUGAGC( ---------- ---ACUAA)G CUUGA-CUU| 1561 A|-GUUA-G- UG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAG G--------- ugCGGC|GUA AAGGGUGGUU -A-agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- --gagcaaga auuaaa--gc -----|CAAG ggaccu-cuu ----GGCC(G 2341 UCAUA)CGCU UC-------u gaguauc-cA AAG------- -----ccaaa -uAC(-GAAA 2401 -)GU|a---- ----gcuuua a----uaaaa ccca------ ccu-gaccCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- UAUAAA-CCU 2521 A--GACG-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(ucac)a a--cA-AACG 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -GUCA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CCUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUAGUC ---------- ---------- 2881 (-------au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(cuc- 3181 aa-)------ U-AGUAAGCA AAG-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAAAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GU-GG- GA-AGA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAG-AAuaa- 4021 ---------- -----GACGA --AUAGC-AU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAa-cu) U-AA-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- auaga-gu-- --)GUCCUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGAGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gu--aaua- 4381 gcaau-caau guaaauaaca acaaagcacc aaca------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGGAUCA AACC-----| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (18)-Gymno 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.Dist.sp 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Distocyclus sp.; . ACCESSION U15270 KEYWORDS . SOURCE Mitochondrion Distocyclus sp. ORGANISM Mitochondrion Distocyclus sp. REFERENCE 1 (bases 1 to 318) AUTHORS Meyer,A. Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and TITLE and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic system: a synthesis based on morphology, electrophysiology, JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 318) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15270 BASE COUNT 95 a 86 c 71 g 66 t 4895 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-U|--C|GC C-CGAG-UAC UACGAGC(-- -ACCA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUCCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAAUCC 2821 C--------- ----)CGUUC A-ACCUCACC ACCUCUUGUU ---------- ---------- 2881 (-------uu ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --CAA)AGG- -----(-uc- 3181 aaa)------ c-aGUAAGCA AAA-CGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cauag- 3781 ---------C CCAAAA-CGU C-AGGCCGAG G|UGUA|GCG UAC------- ---------G 3841 A-G-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aa---)---- ---------- ---------- UAG-AAuau- 4021 ---------- ---uuuaCAA --ACGGC-GC C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAC-u-) A-GG-C--GC -C--CGAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGCAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Eige.sp 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Eigenmannia sp.; . ACCESSION U15269 KEYWORDS . SOURCE Mitochondrion Eigenmannia sp. ORGANISM Mitochondrion Eigenmannia sp. REFERENCE 1 (bases 1 to 318) AUTHORS Meyer,A. Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and TITLE and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic system: a synthesis based on morphology, electrophysiology, JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 318) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15269 BASE COUNT 95 a 92 c 71 g 60 t 4895 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-U|--C|GC C-CGAG-UAC UACGAGC(-- -ACCA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUCCAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC ACCUCUUGUU ---------- ---------- 2881 (-------ca ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --CAA)AGG- -----(cca- 3181 -aa)------ c-aGUAAGCA AAA-CGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacag- 3781 ---------C CCAAAA-CGU C-AGGCCGAG G|UGUA|GCG UAC------- ---------G 3841 A-G-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aa---)---- ---------- ---------- UAG-AAuau- 4021 ---------- ---ucuaCAG --ACGGC-GC C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAU-c-) A-UG-C--GC -C--CGAAG- -guggaUUUA 4141 G-c--AGUAA A-AAGCAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Rhab.sp 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Rhabdolichops sp.; . ACCESSION U15258 KEYWORDS . SOURCE Mitochondrion Rhabdolichops sp. ORGANISM Mitochondrion Rhabdolichops sp. REFERENCE 1 (bases 1 to 318) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 318) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15258 BASE COUNT 93 a 91 c 71 g 63 t 4895 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-CGAG-UAC UACGAGC(-- -ACUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUCCAGA-CC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAAUCC 2821 C--------- ----)CGUUU A-ACCUCACC AUCCCUUGCU ---------- ---------- 2881 (--uu---uu cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C----GC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --CAA)AGG- -----(c-c- 3181 uaa)------ u-aGUAAGCA AAA-CGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cauag- 3781 ---------C CCAAAA-CGU C-AGGCCGAG G|UGUA|GCG CAC------- ---------G 3841 A-G-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAG-AAuau- 4021 ---------- ---ccuaCAA --ACGGC-GC C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) G-CG-C--GC -C--CGAAG- -guggaUUUA 4141 G-c--AGUAA A-AAGCAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.E.elect 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Electrophorus electricus.; . ACCESSION U15268 KEYWORDS . SOURCE Mitochondrion Electrophorus electricus. ORGANISM Mitochondrion Electrophorus electricus. REFERENCE 1 (bases 1 to 314) AUTHORS Meyer,A. Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and TITLE and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic system: a synthesis based on morphology, electrophysiology, JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 314) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15268 BASE COUNT 100 a 80 c 66 g 68 t 4899 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-CGGG-UAC UACAAGC(-- -A-CA--)GC UUG--AAACU CAAAGGAC-U 2761 UG|GCGGUC- UCUCAGA-UC CAUCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUACCCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUCCUUGCU ---------- ---------- 2881 (-------uc cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(-uu- 3181 aaa)------ a-aGUGAGCA AAA-AGAG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uacac- 3781 ---------C CCAAAA-CGU C-AGGCCAAG G|UGUA|GCA UAU------- ---------G 3841 G-A-GC-GG- -AUUGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- CAG-AAuau- 4021 ---------- -----uaCGA --ACCAC-AC A-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) A-UG-U--GU -A--UGAAG- -gcggaUUUA 4141 G-u--AGUAA A-AAGCAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Gym.sp1 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Gymnotus sp.; . ACCESSION U15266 KEYWORDS . SOURCE Mitochondrion Gymnotus sp. ORGANISM Mitochondrion Gymnotus sp. REFERENCE 1 (bases 1 to 316) AUTHORS Meyer,A. Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and TITLE and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic system: a synthesis based on morphology, electrophysiology, JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 316) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15266 BASE COUNT 103 a 72 c 68 g 73 t 4897 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-U|--C|GC C-AGAG-UAC UACAAGC(-- -GAAA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- UUUCAGA-CC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAAUAC 2821 U--------- ----)CGUUU A-ACCUCACC ACUUCUUGUU ---------- ---------- 2881 (-------uc cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(-uc- 3181 aaa)------ a-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uauag- 3781 ---------C CCAAAA-CGU C-AGGCCGAG G|UGUA|GCG CAC------- ---------G 3841 A-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au aa---)---- ---------- ---------- UAG-AAuac- 4021 ---------- -----uaCGC --ACGAC-AC A-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) G-UG-U--AU -C-uUAAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGCAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Adon.sp 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Adontosternarchus sp.; . ACCESSION U15274 KEYWORDS . SOURCE Mitochondrion Adontosternarchus sp. ORGANISM Mitochondrion Adontosternarchus sp. REFERENCE 1 (bases 1 to 316) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 316) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15274 BASE COUNT 97 a 84 c 70 g 65 t 4897 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-CGAU-UAC UACGAGC(-- -CCCA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGCG- UCU-cca-CC CGACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC AUCCCUUGUU ---------- ---------- 2881 (-------uu ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(-ua- 3181 aaa)------ u-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAAAA-CGU C-AGGCCGAG G|UGCA|GCA CAU------- ---------G 3841 G-G-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aa---)---- ---------- ---------- UAG-AAuau- 4021 ---------- ---uuaaCGA --ACGGCAGC A--(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) A-UG-C--GC -C--CGAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGCAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.albif 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Apteronotus albifrons.; . ACCESSION U15275 KEYWORDS . SOURCE Mitochondrion Apteronotus albifrons. ORGANISM Mitochondrion Apteronotus albifrons. REFERENCE 1 (bases 1 to 317) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 317) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15275 BASE COUNT 98 a 83 c 70 g 66 t 4896 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-CGAU-UAC UACGAGC(-- -CCCA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGCG- UCU-cca-CC CGACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC ACCCCUUGUU ---------- ---------- 2881 (-------uu ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(-ua- 3181 aaa)------ u-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAAAA-CGU C-AGGCCGAG G|UGCA|GCA CAU------- ---------G 3841 G-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aa---)---- ---------- ---------- UAG-AAuau- 4021 ---------- --uuuaaCGA --ACGGUAGC A--(------ ---------- ---------- 4081 ---------- ---------- UGAAAU---) A-UG-C--AC -C--CGAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGCAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.lepto 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Apteronotus leptorhynchus.; . ACCESSION U15273 KEYWORDS . SOURCE Mitochondrion Apteronotus leptorhynchus. ORGANISM Mitochondrion Apteronotus leptorhynchus. REFERENCE 1 (bases 1 to 316) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 316) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15273 BASE COUNT 99 a 82 c 69 g 66 t 4897 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-CGAU-UAC UACGAGC(-- -CCCA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGCG- UCU-cca-CC CGACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUU A-ACCUCACC ACCCCUUGUU ---------- ---------- 2881 (-------uu ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(-aa- 3181 uaa)------ u-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAAAA-CGU C-AGGCCGAG G|UGCA|GCA CAU------- ---------G 3841 A-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAG-AAuau- 4021 ---------- ---uuaaCGA --ACGGCAGC A--(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) A-UG-C--GC -C--CAAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGUAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.O.taman 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Orthosternarchus tamandua.; . ACCESSION U15259 KEYWORDS . SOURCE Mitochondrion Orthosternarchus tamandua. ORGANISM Mitochondrion Orthosternarchus tamandua. REFERENCE 1 (bases 1 to 316) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 316) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15259 BASE COUNT 99 a 80 c 68 g 68 t 4898 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-AGAC-UAC UACGAGC(-- -CUCA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGCA- UCU-cca-CC CGACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAAUCC 2821 C--------- ----)CGUUC A-ACCUCACC ACCCCUUGUU ---------- ---------- 2881 (-------uu ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(uua- 3181 un-)------ u-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAAAA-CGU C-AGGCCGAG G|UGCA|GCA CAU------- ---------G 3841 G-G-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aa---)---- ---------- ---------- UAG-AAuau- 4021 ---------- ---uaaaCGA --AUGACAGC A--(------ ---------- ---------- 4081 ---------- ---------- UGAAAA---) A-UG-C--GC -C--UGAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGCAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Ste.sp1 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Sternarchella sp.; . ACCESSION U15254 KEYWORDS . SOURCE Mitochondrion Sternarchella sp. ORGANISM Mitochondrion Sternarchella sp. REFERENCE 1 (bases 1 to 316) AUTHORS Meyer,A. Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and TITLE and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic system: a synthesis based on morphology, electrophysiology, JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 316) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15254 BASE COUNT 99 a 84 c 70 g 63 t 4897 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-CGAU-UAC UACGAGC(-- -CCCA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGCG- UCU-cca-CC CGACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC ACCCCUUGUU ---------- ---------- 2881 (-------uu ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 -aa)------ u-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAAAA-CGU C-AGGCCGAG G|UGCA|GCA CAU------- ---------G 3841 G-G-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aa---)---- ---------- ---------- UAG-AAuau- 4021 ---------- ---uuaaCGA --ACGGCAGC A--(------ ---------- ---------- 4081 ---------- ---------- UGAAAU---) A-UG-C--GC -C--CGAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGAAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Ste.sp2 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Sternarchogiton sp.; . ACCESSION U15255 KEYWORDS . SOURCE Mitochondrion Sternarchogiton sp. ORGANISM Mitochondrion Sternarchogiton sp. REFERENCE 1 (bases 1 to 316) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 316) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15255 BASE COUNT 98 a 84 c 70 g 64 t 4897 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-CGAU-UAC UACGAGC(-- -CCCA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGCG- UCU-cca-CC CGACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC ACCCCUUGUU ---------- ---------- 2881 (-------uu ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(caa- 3181 -aa)------ u-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAAAA-CGU C-AGGCCGAG G|UGCA|GCA CAU------- ---------G 3841 G-G-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aa---)---- ---------- ---------- UAG-AAuau- 4021 ---------- ---uuaaCGA --ACGGCAGC A--(------ ---------- ---------- 4081 ---------- ---------- UGAAAU---) A-UG-C--GC -C--CGAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGAAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.muell 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Sternarchorhamphus muelleri.; . ACCESSION U15256 KEYWORDS . SOURCE Mitochondrion Sternarchorhamphus muelleri. ORGANISM Mitochondrion Sternarchorhamphus muelleri. REFERENCE 1 (bases 1 to 316) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 316) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15256 BASE COUNT 100 a 79 c 66 g 71 t 4897 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-AGAC-UAC UACGAGC(-- -CUCA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGCA- UCU-cca-CC CGACUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAAUCC 2821 C--------- ----)CGUUC A-ACCUCACC ACCCCUUGUU ---------- ---------- 2881 (-------uu ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(uuu- 3181 ua-)------ u-aGUAAGCA AAA-UGGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacaa- 3781 ---------C CCAAAA-CGU C-AGGCCGAG G|UGCA|GCA UAU------- ---------G 3841 G-G-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aa---)---- ---------- ---------- UAG-AAuau- 4021 ---------- ---uuaaCGA --AUAGC-AA C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAA---) A-CG-U--GC -C--UGAAG- -guggaUUUA 4141 G-u--AGUAA A-AAAGCA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Brac.sp 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Brachyhypopomus sp.; . ACCESSION U15262 KEYWORDS . SOURCE Mitochondrion Brachyhypopomus sp. ORGANISM Mitochondrion Brachyhypopomus sp. REFERENCE 1 (bases 1 to 316) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 316) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15262 BASE COUNT 96 a 84 c 73 g 63 t 4897 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-CGAG-UAC UACGAGC(-- -ACUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- ACUCAGA-CC CACCUAGA|G GAGCCUGC-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUU A-ACCUCACC ACCUCUUGUU ---------- ---------- 2881 (-------uu uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC AU-CA|G-CC AAC-|CCC(A --UGA)AGG- -----(gau- 3181 aa-)------ u-aGUAGGCA AGA-AGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----accac- 3781 ---------C CCAAAA-UGU C-AGGCCGAG G|UGUA|GCG UAC------- ---------G 3841 A-G-GU-GG- GAuAGA--AG -UGGGCUACA UU--cucua- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ga---)---- ---------- ---------- uag-acuau- 4021 ---------- -----caCAA --AAGAC-GC C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAU---) A-AG-C--GU -C--CGAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGCAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.H.leptu 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Hypopygus lepturus.; . ACCESSION U15264 KEYWORDS . SOURCE Mitochondrion Hypopygus lepturus. ORGANISM Mitochondrion Hypopygus lepturus. REFERENCE 1 (bases 1 to 314) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 314) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15264 BASE COUNT 91 a 90 c 69 g 64 t 4899 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -AUUC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- UCUCCGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AU CG(AUACCCC 2821 C--------- ----)CGUUC A-ACCUCACC ACCCCUUGUC ---------- ---------- 2881 (---c---cu cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C----GC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU CAC-|CCU(G --UGA)AGG- -----(aaa- 3181 -aa)------ c-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cccac- 3781 ---------C CCAGAA-CGU C-AGGCCAAG G|UGUA|GCG UAU------- ---------G 3841 A-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-ACCAC- 4021 ---------- ------aCGA --AUAGC-AC C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) G-UA-U--GC -U--CAAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGCAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.bilin 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Microsternarchus bilineatus.; . ACCESSION U15260 KEYWORDS . SOURCE Mitochondrion Microsternarchus bilineatus. ORGANISM Mitochondrion Microsternarchus bilineatus. REFERENCE 1 (bases 1 to 315) AUTHORS Meyer,A. Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and TITLE and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic system: a synthesis based on morphology, electrophysiology, JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 315) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15260 BASE COUNT 93 a 90 c 72 g 60 t 4898 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-CGAG-UAC UACAAGC(-- -ACUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- UCUCAGA-CC CAUCUAGA|G GAGCCUGC-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUU A-ACCUCACC ACCCCUUGUU ---------- ---------- 2881 (---u---uc cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C----GC CUA-UA|UA- 3121 |CC|-GC--C |G------UC AU-CA|G-CC AAC-|CCC(A --UGA)AGG- -----(-ga- 3181 caa)------ u-aGUAGGCA AGA-AGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----accgc- 3781 ---------C CCCAAA-UGU C-AGGCCGAG G|UGUA|GCG CAC------- ---------G 3841 A-G-GU-GG- AU-AGA--AG -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ac---)---- ---------- ---------- UAG-AAUAC- 4021 ---------- -----UACgg --aAGGC-AC C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) A-CA-U--GC -C--UGAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGCAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.elega 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Steatogenys elegans.; . ACCESSION U15253 KEYWORDS . SOURCE Mitochondrion Steatogenys elegans. ORGANISM Mitochondrion Steatogenys elegans. REFERENCE 1 (bases 1 to 315) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 315) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15253 BASE COUNT 87 a 83 c 75 g 70 t 4898 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-CGAG-UAC UACGAGC(-- -AU-A--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- UCUCCGA-CC CAUCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUACCCC 2821 C--------- ----)CGUUU A-ACCUCACC ACCCCUUGUU ---------- ---------- 2881 (---u---uu au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---c---cGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU CAC-|CCU(G --UGA)AGG- -----(-aa- 3181 uaa)------ c-aGUAAGCA GAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cccuac 3781 ---------C CCAGAA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 A-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-ACCA-- 4021 ---------- -----uaCGA --ACGGU-GC C-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAU---) A-CG-C--GC -C--UGAAG- -gaggaUUUA 4141 G-u--AGUAA A-AAGCAA(- g~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Gym.sp2 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Gymnorhamphichthys sp.; . ACCESSION U15267 KEYWORDS . SOURCE Mitochondrion Gymnorhamphichthys sp. ORGANISM Mitochondrion Gymnorhamphichthys sp. REFERENCE 1 (bases 1 to 315) AUTHORS Meyer,A. Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and TITLE and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic system: a synthesis based on morphology, electrophysiology, JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 315) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15267 BASE COUNT 97 a 84 c 73 g 61 t 4898 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-CGAG-UAC UACGAGC(-- -AGAA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- ACUCAGA-CC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUACUCC 2821 C--------- ----)CGUUC A-ACCUCACC GCCCCUUGUU ---------- ---------- 2881 (-------aa au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---cGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC AAC-|CCU(G --UGA)AGG- -----(-ac- 3181 uaa)------ c-aGUAAGCA ACA-AGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----auugc- 3781 ---------C CACAAA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 G-G-GC-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aau--)---- ---------- ---------- UAG-ACcac- 4021 ---------- ------aCGA --AAGGC-AC C-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) A-UG-U--GC -C--UAAAG- -gcggaUUUA 4141 G-u--AGUAA A-AAGCAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Rham.sp 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Rhamphichthys sp.; . ACCESSION U15257 KEYWORDS . SOURCE Mitochondrion Rhamphichthys sp. ORGANISM Mitochondrion Rhamphichthys sp. REFERENCE 1 (bases 1 to 314) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 314) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15257 BASE COUNT 93 a 82 c 71 g 68 t 4899 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-CGAG-UAC UACAAGC(-- -AUUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- UCUCCGA-CC CAUCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUACCCC 2821 C--------- ----)CGUUC A-ACCUCACC ACCUCUUGUU ---------- ---------- 2881 (-------uu au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU CAC-|CCU(G --UGA)AGG- -----(aaa- 3181 -aa)------ c-aGUAAGCA AAA-AGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ucuac- 3781 ---------C CCAAAA-CGU C-AGGCCGAG G|UGUA|GCG UAU------- ---------G 3841 A-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAG-A-cua- 4021 ---------- -----uaCGA --ACGGC-AC C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) G-CG-U--GC -C--UGAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGCAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Ste.sp3 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Sternopygus sp.; . ACCESSION U15252 KEYWORDS . SOURCE Mitochondrion Sternopygus sp. ORGANISM Mitochondrion Sternopygus sp. REFERENCE 1 (bases 1 to 316) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 316) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15252 BASE COUNT 101 a 80 c 69 g 66 t 4897 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-CGAG-UAC UACAAGC(-- -AUAA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- UCUCAGA-CC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACCCCUUGUU ---------- ---------- 2881 (---u---uc cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---c----GC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(-ac- 3181 aaa)------ c-aGUAAGCA AAA-UGGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaaaa- 3781 ---------C CCGAAA-CGU C-AGGCCGAG G|UGUA|GCG AAC------- ---------G 3841 A-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ca---)---- ---------- ---------- UAG-AAuau- 4021 ---------- ----ucaCGA --ACGGC-AC C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAU---) A-UA-U--GC -C--UGAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGAAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (18)-Silur 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.Cory.sp 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Corydoras sp.; . ACCESSION U15271 KEYWORDS . SOURCE Mitochondrion Corydoras sp. ORGANISM Mitochondrion Corydoras sp. REFERENCE 1 (bases 1 to 314) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 314) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15271 BASE COUNT 105 a 78 c 67 g 64 t 4899 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -AU-A--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- UCUCAGA-CC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUUGUU ---------- ---------- 2881 (---a---au cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C----GC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(A --UGA)AGG- -----(caa- 3181 -aa)------ c-aGUAAGCA AAA-UGGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caaaa- 3781 ---------C CCAAAA-CGU C-AGGUCGAG G|UGUA|GCG CAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- CAG-AAAAU- 4021 ---------- -----CACgA --AUGGUUUA C--(------ ---------- ---------- 4081 ---------- ---------- UGAAAU---) A-CA-C--AC -C--UGAAG- -gaggaUUUA 4141 G-u--AGUAA A-AAGCAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Ceto.sp 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Cetopsis sp.; . ACCESSION U15272 KEYWORDS . SOURCE Mitochondrion Cetopsis sp. ORGANISM Mitochondrion Cetopsis sp. REFERENCE 1 (bases 1 to 316) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 316) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15272 BASE COUNT 101 a 79 c 67 g 69 t 4897 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -A-UA--)GC UUG--AAACC CAAAGGAC-U 2761 UG|GCGGUA- UCUCAGA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUUGUC ---------- ---------- 2881 (--ca---cu cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C----GC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-UU UAC-|CCU(G --UAA)AGG- -----(-ac- 3181 uaa)------ u-aGUAAACA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cucac- 3781 ---------C CAAAAA-CGU C-AGGUCGAG G|UGUA|GCG AAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c au---)---- ---------- ---------- CAG-AAUAA- 4021 ---------- -----UACgA --ACGGC-AC C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAU-a-) U-AG-U--GC -C--CAAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGUAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Hemi.sp 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Hemicetopsis sp.; . ACCESSION U15265 KEYWORDS . SOURCE Mitochondrion Hemicetopsis sp. ORGANISM Mitochondrion Hemicetopsis sp. REFERENCE 1 (bases 1 to 316) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 316) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15265 BASE COUNT 101 a 81 c 68 g 66 t 4897 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -AU-A--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUA- UCUCAGA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(ACAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUUCUGGCC ---------- ---------- 2881 (---c---gc cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C----GU CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-UU UAC-|CCU(G --UAA)AGG- -----(-ac- 3181 uaa)------ c-aGUAAACA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cucac- 3781 ---------C CAAAAA-CGU C-AGGUCAAG G|UGUA|GCG AAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c au---)---- ---------- ---------- CAG-AAuau- 4021 ---------- ----auaCGA --ACGGC-AC C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAU-a-) U-AG-U--GC -C--CAAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGUAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Hypo.sp 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Hypostomus sp.; . ACCESSION U15263 KEYWORDS . SOURCE Mitochondrion Hypostomus sp. ORGANISM Mitochondrion Hypostomus sp. REFERENCE 1 (bases 1 to 316) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 316) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15263 BASE COUNT 94 a 80 c 74 g 68 t 4897 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-AGGG-AAC UACAAGC(-- -A-CA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CCUCAGA-CC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAAUCC 2821 C--------- ----)CGUUA A-ACCUCACC ACCCCUUGUU ---------- ---------- 2881 (---u---uu cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C----GC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(-uu- 3181 uaa)------ c-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uucaa- 3781 ---------C CCAGAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 G-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ca---)---- ---------- ---------- CAG-AAUAU- 4021 ---------- -----UACgA --AUGGU-GU C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAU-a-) U-GA-C--AC -C-uGGAAG- -gaggaUUUA 4141 G-u--AGUAA A-AAGCAA(- a~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Mala.sp 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Malapterurus sp.; . ACCESSION U15261 KEYWORDS . SOURCE Mitochondrion Malapterurus sp. ORGANISM Mitochondrion Malapterurus sp. REFERENCE 1 (bases 1 to 317) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 317) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15261 BASE COUNT 102 a 81 c 69 g 65 t 4896 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -A-CA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- UCUCAGA-CC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUCACC ACUCCUUGUU ---------- ---------- 2881 (---u---ua cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C----GC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(ca-- 3181 caa)------ c-aGUAAGCA AAA-UAGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uucac- 3781 ---------C CAAAAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-A-GU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ac---)---- ---------- ---------- acu-aagaa- 4021 ---------- --aauuaCGA --ACGGC-AC A-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAA---) U-AG-U--GC -C--CGAAG- -guggaUUUA 4141 G-u--AGUAA A-AAGCAA(- g~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Tric.sp 5213 bp RNA RNA 28-MAY-1998 DEFINITION Mitochondrion Trichomycterus sp.; . ACCESSION U15251 KEYWORDS . SOURCE Mitochondrion Trichomycterus sp. ORGANISM Mitochondrion Trichomycterus sp. REFERENCE 1 (bases 1 to 300) AUTHORS Alves-Gomes,J.A., Orti,G., Haygood,M., Heiligenberg,W. and Meyer,A. TITLE system: a synthesis based on morphology, electrophysiology, and mitochondrial sequence data Phylogenetic analysis of the South American electric fishes (order Gymnotiformes) and the evolution of their electrogenic JOURNAL Mol. Biol. Evol. 12, 298-318 (1995) STANDARD No information REFERENCE 2 (bases 1 to 300) AUTHORS Alves-Gomes,J.A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1994) Jose A. Alves-Gomes, Marine Biology Research Division, Scripps Institution of Oceanography, 8604 La Jolla Shores Dr., La Jolla, CA 92093, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U15251 BASE COUNT 91 a 80 c 66 g 63 t 4913 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~- --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~--)-- -------~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~-------~~ ~~~~~~|~~~ ~~~~~~~~~~ -~-~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~-------~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~--~~~~~~~ 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -A-CA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- C-ucagA-UC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUA A-ACCUUACC AUCCCUUGUU ---------- ---------- 2881 (-------ua cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UAA)AGG- -----(-ac- 3181 aaa)------ c-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ucaac- 3781 ---------C CCAAAA-CGU C-AGGUCGAG G|UGUA|GCG UAC------- ---------G 3841 A-G-AU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- CAG-AAUAC- 4021 ---------- -----CACag --auAGC-GU C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAU---) A-AA-C--GC -U--UGAAG- -gcggaUUUA 4141 G-c------- --------(- -~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)-~~-~~- ~~~~~~~~~~ ~~~------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (17)-Parac 5213 bp RNA RNA 25-JAN-1994 DEFINITION Paracanthopterygii. ACCESSION No information KEYWORDS No information. SOURCE Paracanthopterygii. ORGANISM Paracanthopterygii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.G.morhu 5213 bp RNA RNA 08-AUG-1996 DEFINITION Mitochondrion Gadus morhua.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase; cytochrome C; cytochrome oxidase; NADH dehydrogenase; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val; tRNA-Ala gene; tRNA-Arg gene; tRNA-Asn gene; tRNA-Asp gene; tRNA-Cys gene; tRNA-Gln gene; tRNA-Glu gene; tRNA-Gly gene; tRNA-His gene; tRNA-Ile gene; tRNA-Leu gene; tRNA-Lys gene; tRNA-Met gene; tRNA-Phe gene; tRNA-Pro gene; tRNA-Ser gene; tRNA-Thr gene; tRNA-Trp gene; tRNA-Tyr gene; tRNA-Val gene. ACCESSION X99772 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase; cytochrome C; cytochrome oxidase; NADH dehydrogenase; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val; tRNA-Ala gene; tRNA-Arg gene; tRNA-Asn gene; tRNA-Asp gene; tRNA-Cys gene; tRNA-Gln gene; tRNA-Glu gene; tRNA-Gly gene; tRNA-His gene; tRNA-Ile gene; tRNA-Leu gene; tRNA-Lys gene; tRNA-Met gene; tRNA-Phe gene; tRNA-Pro gene; tRNA-Ser gene; tRNA-Thr gene; tRNA-Trp gene; tRNA-Tyr gene; tRNA-Val gene. SOURCE Mitochondrion Gadus morhua. ORGANISM Mitochondrion Gadus morhua. REFERENCE 1 (bases 1 to 16696) AUTHORS Johansen,S. and Bakke,I. TITLE Gadus morhua: relevance to taxonomic studies among cod-fishes The complete mitochondrial DNA sequence of Atlantic cod, JOURNAL Mol. Marine Biol. Biotechnol. In press STANDARD No information REFERENCE 2 (bases 1 to 16696) AUTHORS Johansen,S. TITLE Direct Submission JOURNAL Submitted (01-AUG-1996) S. Johansen, Institute of Medical Biology, University of Tromso, MH-Building, Breivika, 9037 Tromso, NORWAY STANDARD No information COMMENTS Organism information Culture collection: X99772 Sequence information (bases 1 to 5213) Corresponding GenBank entry: X99772 BASE COUNT 302 a 225 c 208 g 215 t 4263 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GACUU-UA CUA-UCAAUU -G-UACC-CU |AA-UU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCUCCCCGU GAGAA---UG C|CCU-Uaa- --ug-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cugcccg -----)---- 1261 ---------- ---------- --ga--au-- --uAAGGAGC |--------- AGGUAUCA-- 1321 -GGCACAU-- -----(cuaa uaguuua--- ---------- ---------- ------)--- 1381 ---CU|---A GCCCA--UAA C|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( UACG-)--GG UAuu---C-A 1501 GCA|GUG-AU AAAAUUUAAG C-CAUAAGU( ---------- ----GAAA)G CUUGA-CUU| 1561 A|-GUUA-A- GG-GAA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAGA|--- -GGC-CCA-- 1981 AAUUG-AUGA A--------a aaCGGC|GUA AAGCGUGGUU -A-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aaaagagaa aauaug--gc -----|CGAA cagcUU-CAA ----AGCA(G 2341 UUAUA)CGCa UC-------C GAAG-ucacG AAG------- ----aacaau -cAC(-GAAA 2401 -)GU|u---- ----gcccua a-----aacc ---------- ucc-gauuCC ACGAA-AGCC 2461 A-UAA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GUAU-GGU- CGUUAA-CAU 2521 U--GAUG-GU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(auac)c c---AAACCA 2701 U-C|--C|GC C-UGGG-AAC UACGAGC(-- -AAUA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAGA--AC UG(AUAACCC 2821 C--------- ----)CGUUU A-ACCUCACC AUCCUUUGUU ---------- ---------- 2881 (-------uu cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-AC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(aaa- 3181 a--)------ u-aGUAAGCA UAA-AUGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aaag- 3781 ---------C CAAAAA-CGU C-AGGUCGAG G|UGUA|GCG UAU------- ---------G 3841 G-G-AU-GG- GA-AGA--AA -UGGGCUACA UU--CUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- CAG-AGaa-- 4021 ---------- -----UACGA --AUUGU-AA U-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAa-a-) A-AU-U--AC -C--UGAAG- -gaggaUUUA 4141 G-C--AGUAA G-UAGGGA(- cuaga-gu-- --)GCCCUGC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AAC--GGCC 4261 CUGAAG-CG- CGCACACA-C -CGCCCGUCA C-UCU--CUC CA-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aauaaaccc- 4381 --uag-auau uaccu-aaaa ugcuuuuuau aaua------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-C GUA-CC(GGA 4621 -A)GGU-GC- GCUUGGAUGA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.O.mykis 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Oncorhynchus mykiss. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Oncorhynchus mykiss. ORGANISM Mitochondrion Oncorhynchus mykiss. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L29771 DEFINITION Oncorhynchus mykiss mitochondrion complete genome. SOURCE Mitochondrion Oncorhynchus mykiss (organelle Mitochondrion Oncorhynchus mykiss) adult liver DNA. ORGANISM Mitochondrion Oncorhynchus mykiss Eukaryota; Animalia; Chordata; Vertebrata; Osteichthyes; Actinopterygii; Salmoniformes; Salmonoidei; Salmonidae. REFERENCE 1 (bases 1 to 16660) AUTHORS Zardoya,R., Bautista,J.M. and Garrido-Pertierra,A. TITLE The complete nucleotide sequence of the mitochondrial DNA of the Rainbow trout, Oncorhynchus mykiss JOURNAL Unpublished (1994) COMMENT NCBI gi: 463153 FEATURES Location/Qualifiers D-loop 1..1003 /note="control region" tRNA 1004..1071 /anticodon=(pos:1034..1036,aa:Phe) /product="transfer RNA-Phe" /gene="tRNA-Phe" /note="putative" rRNA 1072..2015 /product="12S ribosomal RNA" /gene="12S rRNA" /note="putative" tRNA 2016..2087 /anticodon=(pos:2049..2051,aa:Val) /product="transfer RNA-Val" /gene="tRNA-Val" /note="putative" rRNA 2088..3767 /product="16S ribosomal RNA" /gene="16S rRNA" /note="putative" tRNA 3768..3843 /anticodon=(pos:3804..3806,aa:Leu) /product="transfer RNA-Leu" /gene="tRNA-Leu" /note="putative" tRNA 4819..4890 /anticodon=(pos:4851..4853,aa:Ile) /product="transfer RNA-Ile" /gene="tRNA-Ile" /note="putative" tRNA complement(4888..4958) /anticodon=(pos:4924..4926,aa:Gln) /product="transfer RNA-Gln" /gene="tRNA-Gln" /note="putative" tRNA 4958..5026 /anticodon=(pos:4988..4990,aa:Met) /product="transfer RNA-Met" /gene="tRNA-Met" /note="putative" tRNA 6079..6147 /anticodon=(pos:6111..6113,aa:Trp) /product="transfer RNA-Trp" /gene="tRNA-Trp" /note="putative" tRNA complement(6149..6217) /anticodon=(pos:6185..6187,aa:Ala) /product="transfer RNA-Ala" /gene="tRNA-Ala" /note="putative" tRNA complement(6219..6291) /anticodon=(pos:6257..6259,aa:Asn) /product="transfer RNA-Asn" /gene="tRNA-Asn" /note="putative" rep_origin complement(6292..6328) /standard_name="OriL" /note="Origin of L-strand replication; putative" tRNA complement(6329..6395) /anticodon=(pos:6365..6367,aa:Cys) /product="transfer RNA-Cys" /gene="tRNA-Cys" /note="putative" tRNA complement(6396..6466) /anticodon=(pos:6432..6434,aa:Tyr) /product="transfer RNA-Tyr" /gene="tRNA-Tyr" /note="putative" tRNA complement(8019..8089) /anticodon=(pos:8055..8057,aa:Ser) /product="transfer RNA-Ser" /gene="tRNA-Ser" /note="(UCN); putative" tRNA 8094..8166 /anticodon=(pos:8129..8131,aa:Asp) /product="transfer RNA-Asp" /gene="tRNA-Asp" /note="putative" tRNA 8872..8945 /anticodon=(pos:8906..8908,aa:Lys) /product="transfer RNA-Lys" /gene="tRNA-Lys" /note="putative" tRNA 10561..10630 /anticodon=(pos:10592..10594,aa:Gly) /product="transfer RNA-Gly" /gene="tRNA-Gly" /note="putative" tRNA 10981..11049 /anticodon=(pos:11011..11013,aa:Arg) /product="transfer RNA-Arg" /gene="tRNA-Arg" /note="putative" tRNA 12721..12789 /anticodon=(pos:12751..12753,aa:His) /product="transfer RNA-His" /gene="tRNA-His" /note="putative" tRNA 12790..12858 /anticodon=(pos:12817..12819,aa:Ser) /product="transfer RNA-Ser" /gene="tRNA-Ser" /note="(AGY); putative" tRNA 12860..12931 /anticodon=(pos:12893..12895,aa:Leu) /product="transfer RNA-Leu" /gene="tRNA-Leu" /note="(CUN); putative" tRNA complement(15307..15375) /anticodon=(pos:15343..15345,aa:Glu) /product="transfer RNA-Glu" /gene="tRNA-Glu" /note="putative" tRNA 16520..16591 /anticodon=(pos:16552..16554,aa:Thr) /product="transfer RNA-Thr" /gene="tRNA-Thr" /note="putative" tRNA complement(16591..16660) /anticodon=(pos:16627..16629,aa:Pro) /product="transfer RNA-Pro" /gene="tRNA-Pro" /note="putative" source 1..16660 /organism="Mitochondrion Oncorhynchus mykiss" /mitochondrion="Mitochondrion Oncorhynchus mykiss" /cell_type="hepatocyte" /dev_stage="adult" /sequenced_mol="DNA" /tissue_type="liver" CDS 3844..4815 /gene="NADH-1" /note="putative; NCBI gi: 463154." /product="NADH dehydrogenase subunit 1" /codon_start=1 /translation="MITLITHVINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNI VGPYGLLQPIADGLKLFIKETVRPSTSSPFLFLATPMLALTLALTLWAPMPIPYPVTD LNLGVLFVLALSSLAVYSILGSGWASNSKYALIGELRAVAQTISYEVSLGLILLSVII ITGGFTLQTFNVAQESIWLLVPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNV EYAGGPFALFFLAEYANILLMNTLSAVLFLGASHIPAFPELTALNLMTKAALLSVVFL WVRASYPRFRYDQLMHLVWKSFLPLTLALVLWHLALPIALAGLPPQL" CDS 5027..6076 /gene="NADH-2" /note="putative; NCBI gi: 463155." /product="NADH dehydrogenase subunit 2" /codon_start=1 /translation="MNPYVLTILLSSLGLGTVLTFASSHWLLAWMGLEINTLAIIPIM AQQHHPRAIEATTKYFLTQATAAAMILFASTTNAWLVGEWEIHQLSHPLATTTVMLAL ALKLGLAPVHFWLPEVLQGLELTTGLILSTWQKLAPFALMIQVAPTINSSLLVTIGLL STLVGGWGGLNQTQLRKILAYLPIAHLGWMVLILQFAPSLTLLSLSLYIVMTSSAFLT LKTNNSLTINTLATSWTKSPTLAALTALVLLSLGGLPPLSGFMPKWLILQELTKQGLP LSATLAAMTALLSLYFYLRLCYALTLTIYPNTLTATAPWRLNFTMITLPLSITTIMAL GLLPLTPAVTAMLAL" CDS 6468..8018 /transl_except=(pos:6468..6470,aa:Met) /gene="COI" /note="putative; NCBI gi: 463156." /product="cytochrome oxidase subunit 1" /codon_start=1 /translation="MAITRWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQP GALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSF WLLPPSFLLLLSSSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILG AINFITTIINMKPPAISQYQTPLFVWAVLVTAVLLLLSLPVLAAGITMLLTDRNLNTT FFDPAGGGDPILYQHLFWFFSHPEVYILILPGFGMISHIVAYYSGKKEPFGYMGMVWA MMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGSIKW ETPLLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGA FVHWFPLFTGYTLHSTWTKIHFGIMFIGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLW NTVSSIGSLVSLVAVIMFLFILWEAFAAKREVASIELTSTNVEWLHGCPPPYHTFEEP AFVQVQAN" CDS 8181..8871 /gene="COII" /note="putative; NCBI gi: 463157." /product="cytochrome oxidase subunit 2" /codon_start=1 /translation="MAHPSQLGFQDAASPVMEELLHFHDHALMIVLLISTLVLYIIVA MVSTKLTNMYILDSQEIEIVWTVLPAVILILIALPSLRILYLMDEINDPHLTIKAMGH QWYWSYEYTDYEDLGFDSYMVPTQDLVPGQFRLLETDHRMVVPVESPIRVLVSAEDVL HSWAVPSLGVKMDAVPGRLNQTAFIASRPGVFYGQCSEICGANHSFMPIVVEAVPLEH FEKWSTMMLEDA" CDS 8947..9114 /gene="ATPase8" /note="putative; NCBI gi: 463158." /product="adenosine triphosphatase subunit 8" /codon_start=1 /translation="MPQLNPAPWFAILVFSWLVFLTVIPPKVLGHTFTNEPTSQSTEK AKPEPWNWPWH" CDS 9105..9776 /gene="ATPase6" /note="putative; NCBI gi: 463159." /product="adenosine triphosphatase subunit 6" /codon_start=1 /translation="MTLSFFDQFMSPTYLGIPLIAVALTLPWILFPTPSARWLNNRLI TLQGWFINRFTQQLLLPLNLGGHKWAALLTSLMLFLITLNMLGLLPYTFTPTTQLSLN MGLAVPLWLATVIIGMRNQPTAALGHLLPEGTPVPLIPVLIIIETISLFIRPALGVRL TANLTAGHQLIATAAFVLLPMMPTVAILTSIVLFLLTLLEIAVAMIQAYVFVLLLSLY LQENV" CDS 9776..10561 /gene="COIII" /note="putative; NCBI gi: 463160." /product="cytochrome oxidase subunit 3" /codon_start=1 /translation="MAHQAHAYHMVDPSPWPLTGAIAALLLTSGTAVWFHFHSLTLLT LGNILLLLTMYQWWRDIIREGTFQGHHTPPVQKGLRYGMILFITSEVFFFLGFFWAFY HASLAPTPELGGCWPPAGITTLDPFEVPLLNTAVLLASGVTVTWAHHSIMEGERKQTI QALTLTILLGFYFTFLQGMEYYEAPFTIADGVYGSTFFVATGFHGLHVIIGSTFLAVC LLRQVQYHFTSEHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS" CDS 10631..10979 /gene="NADH-3" /note="putative; NCBI gi: 463161." /product="NADH dehydrogenase subunit 3" /codon_start=1 /translation="MNLITTIITITITLSAVLATISFWLPQISPDAEKLSPYECGFDP LGSARLPFSLRFFLIAILFLLFDLEIALLLPLPWGDQLHTPTLTLIWSTAVLALLTLG LIYEWTQGGLEWAE" CDS 11050..11346 /gene="NADH-4L" /note="putative; NCBI gi: 463162." /product="NADH dehydrogenase subunit 4L" /codon_start=1 /translation="MTPVHFSFTSAFILGLMGLAFHRTHLLSALLCLEGMMLSLFIAL SLWALQMEATGYSVAPMLLLAFSACEASAGLALLVATARTHGTDRLQSLNLLQC" CDS 11340..12720 /gene="NADH-4" /note="putative; NCBI gi: 463163." /product="NADH dehydrogenase subunit 4" /codon_start=1 /translation="MLKILIPTLMLFPTIWLSPAKWLWTTSIAQSLIIALASLSWLKW SSETGWSSSNLYLATDPLSTPLLVLTCWLLPLMILASQSHLSPEPLNRQRAYISLLVS LQTFLVLAFGATEIIMFYVMFEATLLPTLIIITRWGNQTERLNAGTYFLFYTLAGSLP LLVALLLMQNDNGTLSMFTLQYTQPLHLLTWGDKLWWAACLLAFLVKMPLYGVHLWLP KAHVEAPIAGSMILAAVLLKLGGYGMMRMMVMLDPLTKELAYPFIVLALWGIIMTGSI CLRQTDLKSLIAYSSVGHMGLVAGGILIQTPWGFTGAIILMIAHGLASSALFCLANTS YERTHSRTMLLARGMQMILPLMTTWWFVASLANLALPPLPNLMGELMIITSMFNWSYW TLILTGLGTLITASYSLYLFLMTQRGPLPSHIIALEPTHTREHLLIILHLIPIVLLIL KPELMWGWCF" CDS 12932..14770 /gene="NADH-5" /note="putative; NCBI gi: 463164." /product="NADH dehydrogenase subunit 5" /codon_start=1 /translation="MHPTTLILSSSLLMIFTLLIYPLITTLTPTPQHKNWALTHVKTA IKMAFLVSLLPLFVFLDQGTETIVTNWQWMNTTTFDINLSFKFDHYSIIFTPIALYVT WSILEFASWYMHADPNMNRFFKYLLLFLIAMIILVTANNMFQLFIGWEGVGIMSFLLI GWWHGRADANTAAMQAVIYNRVGDIGLILSMAWFATNLNSWEIQQMFASSKGLDLTLP LMGLILAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRLHPLMEDN QTALTVCLCLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLH ICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGMHNLTPSTSSCLTIGSLALTGTPFL AGFFSKDAIIEALNTSHLNAWALTLTLLATSFTAIYSLRVIFFVSMGHPRFTATAPVN ENNPSVINPIKRLAWGSIIAGLLITSNFLPTNTPVMTMPTHLKLAALLVTISGLLIAL ELASLTNKQFKLHPTLTLHNFSNMLGFFPAIIHRLTPKLNLTLGQTIASQMVDHTWFE KVGPKELFQLTCLMVTTTSNIQQGMIKTYLTLFFLSTTLAVLLTLT" CDS complement(14767..15306) /gene="NADH-6" /note="putative; NCBI gi: 463165." /product="NADH dehydrogenase subunit 6" /codon_start=1 /translation="MTYLVSLFLLGLVLGLVAVASNPAPYFAALGLVVAAGVGCGVLV GHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPFPESWGDRSVLGDRSVLGYVVVYTV GVVLVAGLFWGGWYETSWVAVDEFKEFSVLRGDTSGVALMYSHGGGMLIACAWVLLLT LFVVLELTRGLSRGALRAV" CDS 15379..16519 /gene="Cyt b" /note="putative; NCBI gi: 463166." /product="cytochrome b" /codon_start=1 /translation="MANLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLATQ ILTGLFLAMHYTSDISTAFSSVCHICRDVSYGWLIRNIHANGASFFFICIYMHIARGL YYGSYLYKETWNIGVVLLLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGGAL VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATVLHLLFLHETGSNNPAGINSDADKI SFHPYFSYKDLLGFVAMLLGLTSLALFAPNLLGDPDNFTPANPLVTPPHIKPEWYFLF AYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWALVADMLI LTWIGGMPVEHPFIIIGQVASVIYFTIFLVLSPLAGWAEIKALQWA" BASE COUNT 285 a 259 c 215 g 185 t 4269 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGCU 661 (UGG-)U-CC U|GACUU-UA CUA-UCAGCU -C-UAAC-UG |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUUCCUGU GAGGA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(u-gcccg -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- CGGCAUCA-- 1321 -GGCACGC-- -----(ccag ---------- ---------- ---------- ------)--- 1381 ---GC|---A GCCCA--CGA C|GCCUU-GC --|------- (-uaa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GA AAcu---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGC( ---------- ----GAAA)G CUUGA-CUU| 1561 A|-GUUA-A- GG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAGA|--- -GAC-CCU-- 1981 AGUUG-AUAA C--------u acCGGC|GUA AAGAGUGGUU -A-ugg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- --aaauauuu aauaaa--gc -----|CGAA CACCCC-CUC ----AGCC(G 2341 UCAUA)CGCA CC-------U GGGA-GCACG AAG------- ----accuac -uGC(-GAAA 2401 -)GC|a---- ----gcguuu a-----acua ug-------- ccu-gaccCC ACGAC-AGCU 2461 A-AGA---AA CAAACUGGG( AUUAGAUA-) CCCA-CUAU| -GCCU-AGC- CGUAAA-CCU 2521 U--GAUA-GA |AA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(auac)a a--uU-GAUA 2701 U-C|--C|GC C-AGGG-AAC UACAAGC(-- -GCCA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CCUCAGA-CC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC ACCCCUUGUU ---------- ---------- 2881 (-------uu ac-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-AC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(ccc- 3181 ca-)------ U-AGU-AGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----caaa- 3781 ---------A CCAAAA-CGU C-AGGUCGAG G|UGUA|GCG CAU------- ---------G 3841 A-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a au---)---- ---------- ---------- UAG-AGcac- 4021 ---------- -----UACGA --AC-CA-CG CUG(------ ---------- ---------- 4081 ---------- ---------- UGAAAU---) CAGC-G--UC -C--GAAGG- -UGAAAUUUA 4141 G-C--AGUAA A-CAGAAA(- acaga-ga-- --)GUUCUCU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACU--GGCU 4261 CUGAGG-CG- CGCACACA-C -CGCCCGUCA C-UCU--CCC CA-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aguucaaccu 4381 gu--c-cuuc uaacuaagaa guua-acc-g aacaa----- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- GCUUGGAAUA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.salar 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Salmo salar. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Salmo salar. ORGANISM Mitochondrion Salmo salar. REFERENCE 1 (bases 1 to 16696) AUTHORS Hurst,C.D., Bartlett,S.E. and Davidson,W.S. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U12143 LOCUS SSMITOCH1 2841 bp DNA VRT 07-FEB-1996 DEFINITION Salmo salar mitochondrion tRNA-Phe, 12S rRNA, tRNA-Val, 16S rRNA, and tRNA-Leu genes, NADH-ubiquinone oxidoreductase subunit 1 gene, partial cds. ACCESSION U12143 NID g1181629 KEYWORDS . SEGMENT 1 of 4 SOURCE Atlantic salmon. ORGANISM Mitochondrion Salmo salar Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmo. REFERENCE 1 (bases 1 to 2841) AUTHORS Hurst,C.D., Bartlett,S.E. and Davidson,W.S. TITLE Mitochondrial DNA sequence of Atlantic salmon (Salmo salar) JOURNAL Unpublished REFERENCE 2 (bases 1 to 2841) AUTHORS Hurst,C.D. TITLE Direct Submission JOURNAL Submitted (09-JUL-1994) Carolyn D. Hurst, Norwood Laboratory, School of Chemical and Life Sciences, University of Greenwich, Wellington Street, Woolwich, London, SE18 6PF COMMENT NCBI gi: 1181629 FEATURES Location/Qualifiers source 1..2841 /clone="CH52" /mitochondrion /organism="Salmo salar" /tissue_type="liver" tRNA 1..68 /anticodon=(pos:31..33,aa:Phe) /product="tRNA-Phe" rRNA 69..1016 /product="12S rRNA" tRNA 1017..1087 /anticodon=(pos:1049..1051,aa:Val) /product="tRNA-Val" rRNA 1088..2759 /product="16S rRNA" tRNA 2760..2832 /anticodon=(pos:2794..2796,aa:Leu) /product="tRNA-Leu" CDS 2833..>2841 /note="NCBI gi: 1181634" /codon_start=1 /transl_table=2 /product="NADH-ubiquinone oxidoreductase subunit 1" /db_xref="PID:g1181634" BASE COUNT 908 a 736 c 631 g 562 t 4 others ORIGIN BASE COUNT 290 a 257 c 211 g 188 t 4267 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGCU 661 (UGG-)U-CC U|GACUU-UA CUA-UCAGCU -C-UAAC-UG |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUUCCUGU GAGGA---UG C|CCU-Uaa- --uc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-ugcc-- -----)---- 1261 ---------- ---------- --gg--ga-- --cGAGGAGC |--------- CGGCAUCA-- 1321 -GGCACGC-- -----(ccaa ---------- ---------- ---------- ------)--- 1381 ---GC|---A GCCCA--AGA C|GCCUU-GC --|------- (-uaa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GA AAcc---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUAAGC( ---------- ----GAAA)G CUUGA-CUU| 1561 A|-GUUA-A- AG-UUA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-A---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAGA|--- -GGC-CCU-- 1981 AGUUG-AUAA C--------u acCGGC|GUA AAGAGUGGUU -A-CGG---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aaaauauuu aauaaa--gc -----|Cgaa cacccc-cuc ----AGCC(G 2341 UCAUA)CGCA CC-------u gggg-gcacG AAG------- ----aucuac -uAC(-GAAA 2401 -)GC|a---- ----gcuuua a-----uuau a--------- ccu-gaacCC ACGAC-AGCU 2461 A-CGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CGUAAA-CUU 2521 U--GAUG-GA |AA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(auac)a ---acuGACA 2701 U-C|--C|GC C-AGGG-GAC UAUAAGC(-- -GCCA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CCUCAGA-CC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAACCC 2821 C--------- ----)CGUUC A-ACCUCACC ACCUCUUGUU ---------- ---------- 2881 (-------uu cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-AC--C |G------UC GU-CA|G-CU UAC-|CCU(G --UGA)AGG- -----(ccu- 3181 ua-)------ u-aGUAAGCA AAA-UGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caaaa- 3781 ---------C CCAAAA-CGU C-AGUCGGAG G|UGUA|GCG CAU------- ---------G 3841 G-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a au---)---- ---------- ---------- UAG-AGCAC- 4021 ---------- -----UACGA --ACCAC-GC U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) C-AG-C--GU -C--CAAAG- -GUGGAUUUA 4141 G-C--AGUAA A-UAGAAA(- auaga-ga-- --)GUUCUCU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACU--GGCU 4261 CUGAGG-CG- CGCACACA-C -CGCCCGUCA C-UCU--CCC CA-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aguuc-aa-- 4381 uuaac-ccuu cuaacuaaga aau-uaaccg aacaaanna- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGGAAUA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (13)-lobe 5213 bp RNA RNA 25-JAN-1994 DEFINITION lobe-finned fish and tetrapod clade. ACCESSION No information KEYWORDS No information. SOURCE lobe-finned fish and tetrapod clade. ORGANISM lobe-finned fish and tetrapod clade. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (14)-Coela 5213 bp RNA RNA 25-JAN-1994 DEFINITION Coelacanthiformes. ACCESSION No information KEYWORDS No information. SOURCE Coelacanthiformes. ORGANISM Coelacanthiformes. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.L.cha.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Latimeria chalumnae. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Latimeria chalumnae. ORGANISM Mitochondrion Latimeria chalumnae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z21921 ID MTLC12SRA standard; DNA; ORG; 2734 BP. XX AC Z21921; XX DT 14-JUN-1993 (Rel. 36, Created) DT 14-JUN-1993 (Rel. 36, Last updated, Version 2) XX DE L.chalumnae mitochondrion 12S and 16S rRNA genes, and tRNA-Val and DE -Leu genes. XX KW 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; KW transfer RNA-Val. XX OS Latimeria chalumnae OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Osteichthyes; OC Coelacanthiformes; Latimeriidae. XX OG Mitochondrion XX RN [1] RC (sites) RA Hedges S., Hass C.A., Maxson L.R.; RT "Relations of fish and tetrapods"; RL Nature 363:501-502(1993). XX RN [2] RP 1-2734 RA Hedges S.; RT ; RL Submitted (05-MAR-1993) on tape to the EMBL Data Library by: RL Hedges S., Pennsylvania State University, Biology, 208 Mueller Lab, RL University Park, PA, USA, 16802 XX FH Key Location/Qualifiers FH FT source 1..2734 FT /organism="Latimeria chalumnae" FT /mitochondrion FT rRNA 1..975 FT /product="12S rRNA" FT /citation=[1] FT tRNA 976..1042 FT /product="tRNA-Val" FT /citation=[1] FT rRNA 1043..2705 FT /product="16S rRNA" FT /citation=[1] FT tRNA 2706..2734 FT /product="tRNA-Leu" FT /citation=[1] XX SQ Sequence 2734 BP; 997 A; 676 C; 505 G; 556 T; 0 other; BASE COUNT 351 a 262 c 187 g 175 t 4238 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGGUU 661 (UGG-)U-CC C|AGCCU-UG CUA-UCAAUU ---UAAC-CA |GG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCUACCCAGU GAGAA---UG C|CCC-Ugac --uu-au--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(ccgucaa ag---)---- 1261 ---------- ---------- --au--aa-- --cAGGGAGU |--------- AGGUAUCA-- 1321 -GGCACAC-- -----(aaca uuaacg---- ---------- ---------- ------)--- 1381 ---CU|---A GCCCA--AGA C|ACCUU-GU --|------- (-cca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAcu---C-A 1501 GCA|GUG-AU AGACAUUGAA U-AAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GCCA-U- GG-UUA---c aa-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -CAA-C---U CCGU-G(-CC AGCCACC-GC -GGU-UA)-C ACGGAA|--- -GAC-CCA-- 1981 AAAUG-AUAA C------acu acCGGC|GUA AAGCGUGAUU -Aaagg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--c -acccaccau aaugga--gc -----|CACA aauaac-uaa ----AGCU(G 2341 UUAUA)CGCa c-------uu aaaa-a-aaU AUG------- ---cucauca -cAC(-GAAA 2401 -)GU|a---- ----acucca g---caccca aaggaac--- ccu-gaacCC ACGAA-AGCU 2461 A-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CCUAAA-CAC 2521 A--AACA-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(aaac)a c--aC-ACUG 2701 U-U|--C|GC C-AGGG-AAC UACAAGC(-- -GCCA--)GC UUC--AAACC CAAAGGAC-U 2761 UG|GCGGCA- CUUCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAAA--AC UG(ACAACCC 2821 C--------- ----)CACCU A-ACCUCACC AUCCCUAGCC ---------- ---------- 2881 (-auu---aa ac-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CCU(G --UGA)AGG- -----(aaa- 3181 ua-)------ C-AAUGGGCA AAA-AUAA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aaaaa- 3781 ---------U UAAAAA-CGU C-AGGUCGAG G|UGUA|GCA AAU------- ---------G 3841 A-G-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa ua---)---- ---------- ---------- UAG-AAuau- 4021 ---------- -----UACGA --A-AAA-UA C-A(------ ---------- ---------- 4081 ---------- ---------g CGAAAC-c-) U-GU-A--CU -U--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-AGGGGA(- auaga-ga-- --)GCCCCUC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACC--GGCC 4261 CUGAAA-UG- CGCACACA-C -CGCCCGUCA C-UCU--CCU CA-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< cccaaaaucg 4381 gccca-u-cu uu-aauaaa- caaaaacc-- aagcauacaa gu-------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAGG-AGG-C AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUGGACUA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.L.cha.2 5213 bp RNA RNA 02-APR-1997 DEFINITION Mitochondrion Latimeria chalumnae.; . ACCESSION U82228 KEYWORDS . SOURCE Mitochondrion Latimeria chalumnae. ORGANISM Mitochondrion Latimeria chalumnae. REFERENCE 1 (bases 1 to 16407) AUTHORS Zardoya,R. and Meyer,A. TITLE relationships among living sarcopterygians The complete nucleotide sequence of the mitochondrial genome of the coelacanth, Latimeria chalumnae and the phylogenetic JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 16407) AUTHORS Zardoya,R. TITLE Direct Submission JOURNAL Submitted (13-DEC-1996) Ecology & Evolution, State University of New York, 662 Life Sciences, Stony Brook, NY 11794-5245, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U82228 BASE COUNT 352 a 265 c 189 g 177 t 4230 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caAAGGUU 661 (UGG-)U-CC C|AGCCU-UG CUA-UCAAUU -U-UAAC-CA |GG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCUcCCCAGU GAGAA---UG C|CCC-Ugac --uu-au--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(ccgucaa ag---)---- 1261 ---------- ---------- --au--aa-- --cAGGGAGU |--------- AGGUAUCA-- 1321 -GGCACAC-- -----(aaca uuaacg---- ---------- ---------- ------)--- 1381 ---CU|---A GCCCA--AGA C|ACCUU-GU --|------- (-cca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAcu---C-A 1501 GCA|GUG-AU AGACAUUGAA U-AAUAAGU( ---------- ----GAAA)A CUUGA-CUC| 1561 A|-GCCA-U- GG-UUA---c aa-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -CAA-C---U CCGU-G(-CC AGCCACC-GC -GGU-UA)-C ACGGAA|--- -GAC-CCA-- 1981 AAAUG-AUAA C------acu acCGGC|GUA AAGCGUGAUU -Aaagg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--c -acccaccau aaugga--gc -----|CACA aauaac-uaa ----AGCU(G 2341 UUAUA)CGCa c--------u uaaa-aaaaU AUG------- ---cucauca -cAC(-GAAA 2401 -)GU|a---- ----acucca g---caccca aaggaac--- ccu-gaacCC ACGAA-AGCU 2461 A-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CCUAAA-CAC 2521 A--AACA-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(aaac)a c---aCACUG 2701 U-U|--C|GC C-AGGGgAAC UACAAGC(-- -GCCA--)GC UUC--AAACC CAAAGGAc-U 2761 UG|GCGGCA- CUUCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAAA--AC UG(ACAACCC 2821 C--------- ----)CACCU A-ACCUCACC AUCCCUAGCC ---------- ---------- 2881 (-auu---aa ac-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CCU(G --UGA)AGG- -----(aaa- 3181 ua-)------ c-aAUGGGCA AAA-AUAA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aaaaa- 3781 ---------U UAAAAA-CGU C-AGGUCGAG G|UGUA|GCA AAU------- ---------G 3841 A-G-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa ua---)---- ---------- ---------- UAG-AAuau- 4021 ---------- -----UACGA --AAAAA-UA C-A(------ ---------- ---------- 4081 ---------- ---------g CGAAAC-c-) U-GU-A--CU -U--UGAAG- -GAGGaUUUA 4141 G-C--AGUAA A-AGGGGa(- auaga-ga-- --)GCCCCUC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACC--GGCC 4261 CUGAAA-UG- CGCACACA-C -CGCCCGUCA C-UCU--CCU CA-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< cccaaaaucg 4381 gcccc-aucu uuuaauaaac aaaaaacc-- aagcauacaa gu-------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAGG-AGG-C AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGGACUA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (14)-Dipno 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.N.forst 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Neoceratodus forsteri. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Neoceratodus forsteri. ORGANISM Mitochondrion Neoceratodus forsteri. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z21927 Z21926 ID MTNF12SRB standard; DNA; ORG; 2730 BP. XX AC Z21927; XX DT 14-JUN-1993 (Rel. 36, Created) DT 14-JUN-1993 (Rel. 36, Last updated, Version 3) XX DE N.forsteri mitochondrion 12S and 16S rRNA genes, and tRNA-Val and DE -Leu genes. XX KW 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; KW transfer RNA-Val. XX OS Neoceratodus foresteri OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Osteichthyes; OC Sarcopterygii; Lepidosireniformes; Ceratodidae. XX OG Mitochondrion XX RN [2] RP 1-2730 RA Hedges S.; RT ; RL Submitted (05-MAR-1993) on tape to the EMBL Data Library by: RL Hedges S., Pennsylvania State University, Biology, 208 Mueller Lab, RL University Park, PA, USA, 16802 XX RN [3] RP 1-2730 RA Hedges S., Hass C.A., Maxson L.R.; RT "Relations of fish and tetrapods"; RL Nature 363:501-502(1993). XX FH Key Location/Qualifiers FH FT source 1..2730 FT /organism="Neoceratodus foresteri" FT /mitochondrion FT rRNA 1..951 FT /product="12S rRNA" FT /citation=[1] FT tRNA 952..1022 FT /product="tRNA-Val" FT /citation=[1] FT rRNA 1023..2701 FT /product="16S rRNA" FT /citation=[1] FT tRNA 2702..2730 FT /product="tRNA-Leu" FT /citation=[1] XX SQ Sequence 2730 BP; 989 A; 633 C; 530 G; 574 T; 4 other; BASE COUNT 322 a 238 c 194 g 195 t 4264 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUA-UCAUUU -U-CAGC-UA |AA-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCCGU GAGAA---UG C|CCU-Uagu --ug-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-cuacca -----)---- 1261 ---------- ---------- --gg--caa- --aAAGGAGC |--------- AGGCAUCA-- 1321 -GGCUCACU- -----(uuau ---------- ---------- ---------- ------)--- 1381 --AGC|-acA ACCCA--AAA C|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAc----C-A 1501 GCA|GUG-AU UAACAUUGAG C-AAUAAGC( ---------- ----GAAA)G CUUGA-CUC| 1561 A|-GCCA-U- AG-CCU---u cc-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-C---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAAG|--- -GAC-CCG-- 1981 AAUUG-AUAG U-------cu a-CGGC|GUA AAGCGUGAUU -A-gau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--a -gacuaaaaa auuaga--gu -----|UAAA ACCCCA-UCC ----AGCC(G 2341 UCAUA)CGCA UC------C- AUGG-GCCAU AAA------- ---------- -aua(-cagc 2401 -)ua|g---- ----acucua a---acaacu agacua---- cuu-gaauUC ACGAA-AGCU 2461 A-AGA---UA CAAACUGGG( AUUAGAUAN) CCNA-CUAU| -GCUC-AGC- CAUAAA-CUU 2521 U--GACA-AG |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(guac)a a--aG-CUUG 2701 U-C|--C|GC C-AGGG-UAC UACGAGG(-- -GCCA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CCUCACA-CC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAAUCC 2821 A--------- ----)CGUUA A-ACCUCACC GCUUCUUGCC ---------- ---------- 2881 (-------ac ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGU CUA-UA|UA- 3121 |CC|-AC--C |G------UC GC-CA|G-CU UAC-|CCC(G --UGA)GGG- -----(uga- 3181 aa-)------ A-AGUAAGCA CAA-UUGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uacaa- 3781 ---------C CAAAAA-CGU C-AGGUCGAG G|UGUA|GCG AAU------- ---------G 3841 A-A-GC-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- AAG-AAua-- 4021 ---------- -----UACGA --AAGAC-CU A-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-AA-A--GU -C--AGAAG- -GUGGAUUUA 4141 G-C--AGUAA G-AAAAAC(- caaga-au-- --)AUUUUUC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCC 4261 AUGAGG-CGC CGCACACACC -GGCCCGUCA C-UCU--CCU CA-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -auaacaau- 4381 cuaaa-cagu aaauaacuaa acauaauuaa aaua------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAGG-AGG-C AAGUCGUAAC AUGGUAAG-C GUA-CC(GGA 4621 -A)-GU--C- CGUUGGAAUA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.L.parad 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Lepidosiren paradoxa. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Lepidosiren paradoxa. ORGANISM Mitochondrion Lepidosiren paradoxa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z48715 LOCUS MTLPTRRNA 2606 bp DNA VRT 15-MAR-1995 DEFINITION L.paradoxa mitochondrial genes for 12S rRNA, 16S rRNA, tRNA-Val and tRNA-Leu. ACCESSION Z48715 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; tRNA-Leu; tRNA-Val. SOURCE South American lungfish. ORGANISM Mitochondrion Lepidosiren paradoxa Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Osteichthyes; Sarcopterygii; Lepidosireniformes; Lepidosirenidae. REFERENCE 1 (bases 1 to 2606) AUTHORS Hedges,S.B., Hass,C.A. and Maxson,L.R. TITLE Relations of fish and tetrapods [letter] JOURNAL Nature 363 (6429), 501-502 (1993) MEDLINE 93281180 REMARK (sites) REFERENCE 2 (bases 1 to 2606) AUTHORS Hedges,S. TITLE Direct Submission JOURNAL Submitted (14-MAR-1995) to the EMBL/GenBank/DDBJ databases. Hedges S., Pennsylvania State University, Biology, 208 Mueller Lab, University Park, PA, USA, 16802 COMMENT NCBI gi: 732849 FEATURES Location/Qualifiers source 1..2606 /organism="Lepidosiren paradoxa" /mitochondrion rRNA 1..929 /gene="12S rRNA" /citation=[1] /product="12S ribosomal RNA" tRNA 930..997 /citation=[1] /product="tRNA-Val" rRNA 998..2577 /gene="16S rRNA" /citation=[1] /product="16S ribosomal RNA" tRNA 2578..2606 /citation=[1] /product="tRNA-Leu" BASE COUNT 923 a 506 c 501 g 675 t 1 others ORIGIN BASE COUNT 314 a 196 c 179 g 237 t 4287 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUG-UCAAUU -U-UUAC-UG |AU-CU--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACACCUGU GAAAA---UG C|UCU-Uaa- --ga-ac--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(c-aagcg -----)---- 1261 ---------- ---------- --gu--uu-- --uAAGAAGC |--------- CGGCAUCA-- 1321 -GACACA--- -----(aaau ---------- ---------- ---------- ------)--- 1381 ----U|---A GUCCA--AGA C|GCCUU-GC --|------- (-aaa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( -AAG-)--GG AAA----C-A 1501 GCA|GUA-AU UAAUCUUAGG C-AAUAAGU( ---------- ----GAAA)A CUUGA-CCU| 1561 A|-GUUA-C- AG-UUA---u ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- AAAUC|-GGC 1921 -CAA-U---C UCGU-G(-CC AGCCGCC-GC -GGU-UA)-U ACGAGA|--- -GAU-UUU-- 1981 -AUUG-AUAA A--------- uuCGGC|GUA UAGGGUGAUU -A-gga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------u--- -auacuuaau uuuaaa--au -----|UUAA CUUUAG-CCA ----AGCU(G 2341 UUAUA)CGCU UC------C- GCUA-AUAAG AAA------- ---------- ---a(-ucau 2401 -)u-|----- ----auuuua a---uuaaag aguuau---- ucu-gaccUC ACGAA-AGCC 2461 A-AGA---AA CAAACUAGG( AUUAGAUAC) CCUA-CUAU| -GCUU-GGC- UAUAAA-CUA 2521 U--AGUG-AA |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u-uuac-a u--cA-UUCA 2701 C-U|--C|GC C-AGAG-GAC UACUAGC(-- -ACAA--)GC UAA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCUCAAA-CC CACCUAGA|G GAGCCUGU-C |CUAAA--AC CG(AUAAUCC 2821 A--------- ----)CGUUU U-ACCUAACC ACUUUUUGCC ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC AAC-|CCC(G --UGA)GAG- -----(aaa- 3181 ua-)------ a-aCUAGGCA AAA-Uuaa-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cuuag- 3781 ---------u uaAAUA-CGU C-AGGUCGAG G|UGUA|GCA UAU------- ---------G 3841 A-A-GU-GG- -A-AGA--GA -UGGGCUACA UU--UUCU-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u gu---)---- ---------- ---------- -AG-AAua-- 4021 ---------- -----UACGA --AUAGC-UA A-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AA-A--GC -U--GGAAG- -GUGGAUUUA 4141 G-C--AGUAA A-GAAAAA(- ucaua-au-- --)AUUUUCC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCC 4261 AUGAGG-CG- CGCACACA-C -CGCCCGUCA C-UCU--CCU CA-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -acagccca- 4381 aaaac-auua uuuaauauaa aauagcuaca a--------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- GCUUGGAGU- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.dollo 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Protopterus dolloi. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Protopterus dolloi. ORGANISM Mitochondrion Protopterus dolloi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L42813 LOCUS PRRMTCG 16646 bp DNA VRT 11-JAN-1996 DEFINITION Protopterus dolloi complete mitochondrial genome. ACCESSION L42813 NID g1161203 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; NADH dehydrogenase; complete genome; mitochondrial DNA; transfer RNA. SOURCE Mitochondrion Protopterus dolloi adult eggs DNA. ORGANISM Mitochondrion Protopterus dolloi Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Dipnoi; Lepidosireniformes; Protopteridae; Protopterus. REFERENCE 1 (bases 1 to 16646) AUTHORS Zardoya,R. and Meyer,A. TITLE The complete nucleotide sequence of the mitochondrial genome of the lungfish (Protopterus dolloi), supports its phylogenetic position as a close relative of land vertebrates JOURNAL Unpublished (1995) COMMENT NCBI gi: 1161203 FEATURES Location/Qualifiers source 1..16646 /organism="Mitochondrion Protopterus dolloi" /mitochondrion /dev_stage="adult" /sequenced_mol="DNA" /tissue_type="eggs" tRNA 1..67 /gene="tRNA-Phe" /note="putative" /anticodon=(pos:31..33,aa:Phe) /product="transfer RNA-Phe" rRNA 68..1000 /gene="12S rRNA" /note="putative" /product="12S ribosomal RNA" tRNA 1001..1072 /gene="tRNA-Val" /note="putative" /anticodon=(pos:1034..1036,aa:Val) /product="transfer RNA-Val" rRNA 1073..2663 /gene="16S rRNA" /note="putative" /product="16S ribosomal RNA" tRNA 2664..2738 /gene="tRNA-Leu(UUR)" /note="putative" /anticodon=(pos:2699..2701,aa:Leu) /product="transfer RNA-Leu" CDS 2739..3707 /note="NCBI gi: 1161204" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 1" /db_xref="PID:g1161204" /translation="MNPLPTITNSLMYIVPILLAVAFLTLVERKIIGYMQHRKGPNVV GPYGLLHPIADGVKLFIKEPVRPTASSTTLFILAPTLALTLALLIWTPLPMPFPMANV NLTLLFIMAVSSLSVYSILTSGWASNSKYALIGALRAIAQTISYEVSLGLILLAAIIF MGNFSMLTFSTGQEAIWLIIPAWPLATMWYVSTLAETNRSPFDLTEGESELASGFNVE YAGGPLASFYLAEYANIMLMNTISVIIFLGDSLNLLLPEMMTSLLMFKTTALSLVFLW VRASYPRFRYDQLMHLIWKNFLPLTLSLIILHISAPLAFTGLPPQF" tRNA 3706..3777 /gene="tRNA-Ile" /note="putative" /anticodon=(pos:3738..3740,aa:Ile) /product="transfer RNA-Ile" tRNA complement(3775..3845) /gene="tRNA-Gln" /note="putative" /anticodon=(pos:3811..3813,aa:Gln) /product="transfer RNA-Gln" tRNA 3845..3913 /gene="tRNA-Met" /note="putative" /anticodon=(pos:3875..3877,aa:Met) /product="transfer RNA-Met" CDS 3914..4942 /note="putative; NCBI gi: 1161205" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 2" /db_xref="PID:g1161205" /translation="MSPTILSVLIMSLGLGTTVTFMSSNWLLAWIGLEINTMSIIPLM SQQHHPRATEAATKYFLAQAAASIMILFSSMINAWVAGEWNITNLLSPTSATLITLAL AIKIGLAPMHFWLPEVLQGVTLMTGAILVTWQKLAPFILLYQISDTVNPTLLLVLALS TLTGGWSGLNQTQLRKILAYSSIAHMGWMTMILPFAPNLALLNLMIYITLTLPLFFTL NICSSTSIPSLALNWTKSPLLMTMLLITLLSLGGLPPLTGFMPKWLILQELTNNDLYI FATAAALSALLSLYFYLRLCYTTSLTTSPNTLNNNHWRPNAGTYQILSMILIFATALL PLTPGLIM" tRNA 4945..5014 /gene="tRNA-Trp" /note="putative" /anticodon=(pos:4976..4978,aa:Trp) /product="transfer RNA-Trp" tRNA complement(5015..5083) /gene="tRNA-Ala" /note="putative" /anticodon=(pos:5051..5053,aa:Ala) /product="transfer RNA-Ala" tRNA complement(5084..5156) /gene="tRNA-Asn" /note="putative" /anticodon=(pos:5121..5123,aa:Asn) /product="transfer RNA-Asn" tRNA complement(5182..5248) /gene="tRNA-Cys" /note="putative" /anticodon=(pos:5218..5220,aa:Cys) /product="transfer RNA-Cys" tRNA complement(5249..5317) /gene="tRNA-Tyr" /note="putative" /anticodon=(pos:5284..5286,aa:Tyr) /product="transfer RNA-Tyr" CDS 5319..6866 /note="putative; NCBI gi: 1161206" /codon_start=1 /transl_table=2 /product="cytochrome oxidase subunit 1" /db_xref="PID:g1161206" /translation="MTLTRWLFSTNHKDIGTLYMVFGAWAGMVGTALSLLIRAELSQP GALLGDDQVYNVLVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSF WLLPPSFLLLLAGSGVEAGAGTGWTVYPPLASNLAHAGASVDLTIFSLHLAGVSSILG SINFITTIINMKPPAASQYQTPLFIWSVMITTVLLVLSLPVLAAGITMLLTDRNLNTT FFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVGFYSGKKEPFGYMGMVWA MMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGAIKW ETPLLWALGFIFLFTVGGLTGIVLANSSLDIMLHDTYYVVAHFHYVLSMGAVFAIMGG LMHWFPLMTGYTLHDTWTKIHFGVMFLGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLW NTLSSVGSLISLVAVILLLFIIWEAFASKREVNSIELIYTNVEWMHGCPPPYHTFEEP AFVQIQR" tRNA complement(6871..6941) /gene="tRNA-Ser(UCN)" /note="putative" /anticodon=(pos:6907..6909,aa:Ser) /product="transfer RNA-Ser" tRNA 6944..7012 /gene="tRNA-Asp" /note="putative" /anticodon=(pos:6974..6976,aa:Asp) /product="transfer RNA-Asp" CDS 7015..7705 /note="putative; NCBI gi: 1161207" /codon_start=1 /transl_table=2 /product="cytochrome oxidase subunit 2" /db_xref="PID:g1161207" /translation="MAHPSQLGLQDAASPVMEELIHFHDHALMIVFLISTLVLYIIVA MVSTKFTNKFILDSQEIEIVWTILPAVILIMIALPSLRILYLMDEINDPHLTVKAVGH QWYWSYEYSDYETLNFDSYMTPTQDLTPGQFRLLETDYRMVVPMESPIRVLITADDVI HSWAVPALGIKMDAVPGRLNQASFITARPGMFYGQCSEIWGANHSFMPIVVEAAPLQH FENWSSLMLEKA" tRNA 7706..7774 /gene="tRNA-Lys" /note="putative" /anticodon=(pos:7736..7738,aa:Lys) /product="transfer RNA-Lys" CDS 7776..7943 /note="putative; NCBI gi: 1161208" /codon_start=1 /transl_table=2 /product="adenosine triphosphate subunit 8" /db_xref="PID:g1161208" /translation="MPQLNPGPWFNILLISWLTFLLILLPKILSHKTNNCPTPQSQDK LFLPPWNWPWL" CDS 7934..8615 /note="'putative'; NCBI gi: 1161209" /codon_start=1 /transl_table=2 /product="'Adenosine Triphosphatase subunit 6'" /db_xref="PID:g1161209" /translation="MTLSFFDQFLSPTILGIPLIFLSLILPWLLYPTAPNRWLTSRLL TLQNWLILRTAAQLMAPINQQGQKWAVILTSLMLFLISINLLGLLPYTFTPTTQLSMN MGWGVPMWLATVLIGLRNQPTTSIGHLLPEGTPNLLIPALVVIETISLFIRPLALGVR LTANLTGGHLLMQLIATAAFFGASVMPTIALLPYTILFLLTILELAGAMIQAYVCALL LTLYLQENI" CDS 8616..9399 /note="putative; NCBI gi: 1161210" /codon_start=1 /transl_table=2 /product="cytochrome oxidase subunit 3" /db_xref="PID:g1161210" /translation="MAHQAHASHMGDPSPWPLTGATAALLMTSGLAIWFHYHTVILLT IGLILTLLTMYQWWRDVVREGTFQGHHTAPVQKGLRYGMILFITSEVLFFFGFFWAFY HSSLAPTPELGGCWPPTGIVPLDPFEVPLLNTAVLLASGVTVTWAHHSLMEGNRKETT QALIFTVLLGLYFTALQAMEYYEAPFTIADSVYGATFFVATGFHGLHVIIGSTFLLIC LLRQAQYHFTSNHHFGFEASAWYWHFVDVVWLCLYVSIYWWGS" tRNA 9400..9469 /gene="tRNA-Gly" /note="putative" /anticodon=(pos:9431..9433,aa:Gly) /product="transfer RNA-Gly" CDS 9471..9816 /note="putative; NCBI gi: 1161211" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 3" /db_xref="PID:g1161211" /translation="MNLLIVMIISTALPIILMLLGFWLPNLNPDNEKVSPYECGFDPL GSARLPFSLKFFLVAILFLLFDLEIAILLPLPWALQYDTPTTAFLIALLILILLTLGL IYEWLQGGLEWAE" tRNA 9817..9885 /gene="tRNA-Arg" /note="putative" /anticodon=(pos:9847..9849,aa:Arg) /product="transfer RNA-Arg" CDS 9886..10182 /note="putative; NCBI gi: 1161212" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 4L" /db_xref="PID:g1161212" /translation="MTPTLFSIVSAFYSSLMGLALNRSHLILALLCLEGAMLSVFLML SMWSAFQGPYSIAGTPLILLALAACEAGTGLALMVATARTHGTDHLKSLNLLQC" CDS 10176..11559 /note="putative; NCBI gi: 1161213" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 4" /db_xref="PID:g1161213" /translation="MLKILIPTIMLIPTTWLISLPLLWTMPLIYTTLIACASLSFLKW NSISGWSFINLYMTIDSISAPLLVLSCWLLPLMILASQNHMLHEPLQRQRVYLILLMI LQTFLLLTFMASELIMFYVMFEATLIPTLIIITRWGNQAERLQAGTYFLFYTLAGSLP LLIALLLINKNMMTSSIVLLNFFSTDFSSNSYASTLWWAASLFAFLVKMPLYGVHLWL PKAHVEAPIAGSMVLAAILLKLGGYGMLRMIPILPPLAKPLIYPFIILALWGIIMTGM ICLRQSDLKSLIAYSSVSHMGLVISGILIQTPWGLTGAITLMIAHGLTSSLLFCLANT NYERTHSRTMLLARGMQTILPLFGLWWLLANLTNLALPPSINLMGELPIIMATFNWAG LTILLTGIGTLITATYSLYMYMMTQHGQISPQTTMMEPAHTREHLLISLHLIPSFLLI MKPELIWGWFC" tRNA 11560..11628 /gene="tRNA-His" /note="putative" /anticodon=(pos:11590..11592,aa:His) /product="transfer RNA-His" tRNA 11629..11697 /gene="tRNA-Ser(AGY)" /note="putative" /anticodon=(pos:11655..11657,aa:Ser) /product="transfer RNA-Ser" tRNA 11698..11766 /gene="tRNA-Leu(CUN)" /note="putative" /anticodon=(pos:11728..11730,aa:Leu) /product="transfer RNA-Leu" CDS 11767..13602 /note="putative; NCBI gi: 1161214" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 5" /db_xref="PID:g1161214" /translation="MTQQSVMLSSSLLIFFILLAPLALALVPSLITPHWHKFYAKSAV KLAFFISLLPLFLFMDQGIEIVSTNYQWMAINSFTFNIAFKFDFLSITFMSIALFVTW SILDFAAWYMHEDPYINQFFKYLLLFLTAMMVLTSANNLFQLFIGWEGVGIMSFLLIG WWYGRADANTAALQAVLYNRIGDIGLILAISWFTTNFNTLDIQQLFILNTNESSIIPL LGLILAATGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLLRLHPLLQNNE TALTLCLLLGAITTVFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPLLAFLHI CTHAFFKAMLFLCSGSIIHNLNNEQDIRKMGGLNMALPMTTSCLLIGSLALSGGPFLG GFFSKDAIIEAMNSSFLNAWALTWTLIATSFTAAYSLRIIFYVSMNFPRYPALTPILE AQQASTPIMRLAIGSVVAGFLLILNIPPPPPQVMTMPTSAKLAAIGVTIVGLFTAAEL SNITNKQLKTFPYLTPYNFSNMLAYFQSTTHRLFPTLNLKWAQLLATHLIDVIWLEKS GAKSSMKINTTFSTFITNSQQGMIKTYLTLFFMSTATFLMFLLLN" CDS complement(13591..14103) /note="putative; NCBI gi: 1161215" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 6" /db_xref="PID:g1161215" /translation="MSFIFFTLLVGFLVSLIGVASNPAPYFAALGLVFGAGIGCGILI WLGNSFLSLILFLIYLGGMLVVFGYSAALAAEPYPGGWEDWSVLLYSLLLLGAGVGIG WAVVGGWDVFDSASFLGGTILGELSGVGGMYWCGGFILVLVGWSLLLALFVVLEVTRG GVRGAMRPIE" tRNA complement(14104..14172) /gene="tRNA-Glu" /note="putative" /anticodon=(pos:14140..14142,aa:Glu) /product="transfer RNA-Glu" CDS 14175..15318 /note="putative; NCBI gi: 1161216" /codon_start=1 /transl_table=2 /product="cytochrome b" /db_xref="PID:g1161216" /translation="MATNIRKTHPLLKIVNNSLIDLPTPSNISAWWNFGSLLGFCLIT QILTGLFLAMHYTADTSTAFSSIAHIARDVNYGWLLRNIHANGASMFFICIYIHIGRG IYYGSFLYTETWNIGVVLFLLTMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYLGDT LVQWIWGGFSVDNATLTRFFAFHFLLPFIISAMTAAHFLFLHETGSNNPTGLNSNLDK ISFHPYFTMKDLLGFLMLASFLCLLALFSPNLLGDPENFTPANPLVTPTHIKPEWYFL FAYAILRSIPNKLGGVLALMASILILFIIPFLHRAKQRTMSYRPLSQFMFWLLTADML ILTWIGGQPVEHPFILIGQIASATYFLLFLLLFPLITSLENKLLYKY" tRNA 15319..15390 /gene="tRNA-Thr" /note="putative" /anticodon=(pos:15350..15352,aa:Thr) /product="transfer RNA-Thr" tRNA complement(15393..15462) /gene="tRNA-Pro" /note="putative" /anticodon=(pos:15429..15431,aa:Pro) /product="transfer RNA-Pro" D-loop 15463..16646 /note="control region" BASE COUNT 4800 a 4406 c 2616 g 4824 t ORIGIN BASE COUNT 297 a 234 c 195 g 207 t 4280 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cacAGGUU 661 (UGG-)U-CC U|GGCCU-UA AUG-UCAGCU -U-UAAC-UA |AA-CU--UA -UAC-ACUGC 721 CAAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------ccc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GAAAA---UG C|CCU-Cac- --ac-gc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(c-aguag -----)---- 1261 ---------- ---------- --gu--gu-- --aGAGGAGC |--------- UGGCAUCA-- 1321 -GGCCCAC-- -----(acua a--------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-aac--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( -AAG-)--GG ACA----C-A 1501 GCA|GUA-AU UAAAAUUGGA C-UAUAAGU( ---------- ----GUAA)A CUUGA-UCC| 1561 A|-GCCA-U- GG-UUA---a aua------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- AAGUU|-GGC 1921 -CAA-C---C UCGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACGAGG|--- -AAC-UUA-- 1981 AGUUG-AUGC C--------- ucCGGC|GUA UAGGAUGAUU -A-AGA---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- --gaacuuuu acuaaa--au -----|CAAA uaUUGG-CCC ----UGCU(G 2341 UUAUA)CGCG CU------C- GCCA-ACUAG AAA------- ---------- --cu(-caa- 2401 -)a-|----- ----auuuuu a---acuaac aguaca---- ucu-gaacUC AUGAA-AGUC 2461 A-GGA---AA CAAACUAGG( AUUAGAUAC) CCUA-CUAU| -GCCU-GAC- CCUAAA-CUA 2521 U--GACA-AG |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uaa(cuac)a u--AA-CUUG 2701 C-C|--C|GC C-A-GG-AAC UACAAGC(-- -CCAA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CCUCACA-CC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAAUCC 2821 A--------- ----)CGUUU U-ACCCAACC UUCCCUAGCA ---------- ---------- 2881 (--------u uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC AAC-|CCC(C --UGA)GGG- -----(uag- 3181 ac-)------ u-aGUUGGCA GAA-UAGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaaca- 3781 ---------U CUAGCA-CGU C-AGGUCGAG G|UGUA|GCA CAU------- ---------G 3841 A-G-AA-GG- -A-AGA--AA -UGGGCUACA UU--UUCU-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a gu---)---- ---------- ---------- -AG-AAAA-- 4021 ---------- -----CACGG --ACAAU-CC C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) U-GG-G--AU -U--CUAAG- -CUGGAUUUA 4141 G-U--AGUAA G-AGAAAA(- UAAGA-AU-- --)AUUUUUC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 AUGAGG-CG- CGCACACA-C -CGCCCGUCA C-UCU--CCU CA-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -acaaucgua 4381 aacga-uaaa uaauuaauuu agauaaaaa- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUGGUUU- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.Prot.sp 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Protopterus sp.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Protopterus sp. ORGANISM Mitochondrion Protopterus sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z21923 ID MTPS12SRA standard; DNA; ORG; 2621 BP. XX AC Z21923; XX DT 14-JUN-1993 (Rel. 36, Created) DT 14-JUN-1993 (Rel. 36, Last updated, Version 2) XX DE Protopterus sp. mitochondrion 12S and 16S rRNA genes, and tRNA-Val DE and -Leu genes. XX KW 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; KW transfer RNA-Val. XX OS Protopterus sp. OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Osteichthyes; OC Sarcopterygii; Lepidosireniformes. XX OG Mitochondrion XX RN [1] RC (sites) RA Hedges S., Hass C.A., Maxson L.R.; RT "The closest living relative of tetrapods indicated by RT slow-evolving mitochondrial genes"; RL Nature 0:0-0(1993). XX RN [2] RP 1-2621 RA Hedges S.; RT ; RL Submitted (05-MAR-1993) on tape to the EMBL Data Library by: RL Hedges S., Pennsylvania State University, Biology, 208 Mueller Lab, RL University Park, PA, USA, 16802 XX RN [3] RP 1-2621 RA Hedges S., Hass C.A., Maxson L.R.; RT "Relations of fish and tetrapods"; RL Nature 363:501-502(1993). XX FH Key Location/Qualifiers FH FT source 1..2621 FT /organism="Protopterus sp." FT /mitochondrion FT rRNA 1..930 FT /product="12S rRNA" FT /citation=[1] FT tRNA 931..1002 FT /product="tRNA-Val" FT /citation=[1] FT rRNA 1003..2592 FT /product="16S rRNA" FT /citation=[1] FT tRNA 2593..2621 FT /product="tRNA-Leu" FT /citation=[1] XX SQ Sequence 2621 BP; 858 A; 596 C; 534 G; 631 T; 2 other; BASE COUNT 297 a 233 c 194 g 206 t 4283 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---acAGGUU 661 (UGG-)U-CC U|GGCCU-UA AUG-UCAGCU -U-UAAC-UA |aa-CUuaua -CAC---UGC 721 cAAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------ccc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GAAAA---UG C|CCU-Cac- --ac-gc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(c-aguag -----)---- 1261 ---------- ---------- --gu--gu-- --aGAGGAGC |--------- uGGCAUCA-- 1321 -GGCCCAC-- -----(acua a--------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-aac--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( -AAG-)--GG ACA----C-A 1501 GCA|GUA-AU UAAAAUUGGA C-UAUAAGU( ---------- ----GUAA)A CUUGA-UCC| 1561 A|-GCCA-U- GG-UUA---a aua------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- AAGUU|-GGC 1921 -CAA-C---C UCGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACGAGG|--- -AAC-UUA-- 1981 AGUUG-AUGC C--------- ucCGGC|GUA UAGGAUGAUU -A-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- --gaacuuuu acuaaa--au -----|CAAA uaUUGG-CCC ----uGCU(G 2341 UUAUA)CGCG CU------C- GCCA-ACUAG AAA------- ---------- --cu(-caaa 2401 -)a-|----- ----uuuuua a---cuaaca guaca----- ucu-gaacUC AUGAA-AGUC 2461 A-GGA---AA CAAACUAGG( AUUAGAUAC) CCUA-CUAU| -GCCU-GAC- CCUAAA-CUA 2521 U--GACA-AG |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uaa(cuac)a u--aA-CUUG 2701 C-C|--C|GC C-A-GG-AAC UACAAGC(-- -CCAA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CCUCACA-CC CACCUAGA|G GAGCCUGU-U |CUAGA--AC CG(AUAAUCC 2821 A--------- ----)CGUUU U-ACCCAACC UUCCCUAGCA ---------- ---------- 2881 (--------u uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC AAC-|CCC(C --UGA)GGA- -----(gac- 3181 ---)------ U-AGUUGGCA GAA-UAGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaaca- 3781 ---------U CUAGCA-CGU C-AGGUCGAG G|UGUA|GCA CAU------- ---------G 3841 A-G-AA-GG- -A-AGA--AA -UGGGCUACA UU--UUCU-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a gu---)---- ---------- ---------- -AG-AAaa-- 4021 ---------- -----CACGG --ACAAU-CC C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) U-GG-G--AU -U--CUAAG- -CUGGAUUUA 4141 G-U--AGUAA G-AGAAAA(- uaaga-au-- --)AUUUUUC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 AUGAGG-CG- CGCACACA-C -CGCCCGUCA C-UCU--CCU CA-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -acaaucgu- 4381 aaacg-auaa auaauuaauu uagauaaaaa ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAGG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUGGUUU- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (14)-Tetra 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (15)-Amnio 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (16)-Mamma 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (17)-Proto 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.O.anati 5213 bp RNA RNA 11-JAN-191 DEFINITION Ornithorhychus anatinus. ACCESSION No information KEYWORDS No information. SOURCE Ornithorhychus anatinus. ORGANISM Ornithorhychus anatinus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U33498 + X83427 LOCUS OAU33498 944 bp DNA MAM 16-NOV-1995 DEFINITION Ornithorhynchus anatinus 12S rRNA gene, mitochondrial gene encoding mitochondrial rRNA, complete sequence. ACCESSION U33498 KEYWORDS . SOURCE duckbill platypus. ORGANISM Mitochondrion Ornithorhynchus anatinus Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Monotremata; Ornithorhynchidae; Ornithorhynchus. REFERENCE 1 (bases 1 to 944) AUTHORS Springer,M.S., Hollar,L.J. and Burk,A. TITLE Compensatory substitutions and the evolution of the mitochondrial 12S rRNA gene in mammals JOURNAL Mol. Biol. Evol. 12 (1995) In press REFERENCE 2 (bases 1 to 944) AUTHORS Burk,A. TITLE Direct Submission JOURNAL Submitted (09-AUG-1995) Angela Burk, University of California, Biology, Riverside, CA 92521, USA COMMENT NCBI gi: 1065404 FEATURES Location/Qualifiers source 1..944 /mitochondrion /organism="Ornithorhynchus anatinus" rRNA 1..944 /product="12S rRNA" BASE COUNT 344 a 210 c 168 g 222 t ORIGIN BASE COUNT 344 a 210 c 168 g 222 t 4269 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUG-UUAGAU -U-UGAU-UA |GA-UU--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCAGU GAGAA---UA C|CCU-aaaa --ac-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----uu aac--)---- 1261 ---------- ---------- --aa--guu- a-gaAGGAGU |--------- aGAUAUCA-- 1321 -GGCACA--- -----(cuaa ag-------- ---------- ---------- ------)--- 1381 ----u|---A GCCCA--CAA C|AUCUU-GC --|------- (-ccua-)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACA----C-A 1501 GCA|GUA-AU AGAAAUUAGU C-AAUAAAC( ---------- ----GCAA)G UUUGA-ACA| 1561 A|-GUCA-U- AA-UCAAUAA ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUC|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -GAC-UCA-- 1981 ACCUA-ACAA A--------U AACGGU|GUA AAACGUGUUU -A-AAA---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -acuuaaacu aauaag--au -----|uaaa guagaa-cua ----AACU(G 2341 UGAUA)AGUC AU-------a guua-auacu aaa------- ----gccauc -UAC(-GAAA 2401 -)GU|g---- ----aucuua gacua----- ---------- auu-gaauAC ACGAU-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CUC 2521 A--AGUC-GU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a----AACUA 2701 C-U|--C|AC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCA---CC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC AUCUUUUGCC ---------- ---------- 2881 (-------ac ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---UGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CC AAC-|CCU(A --AAA)AGG- -----(aac- 3181 aa-)------ A-AGUAGGCG UAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuuuc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------A 3841 A-G-AU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c au---)---- ---------- ---------- UAG-AAcau- 4021 ---------- ------ACGA --AAaac-uc u-a(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) u-ag-a--gu -a--UUAAG- -GAGGAUUUA 4141 G-U--AGUAA G-CCAAGA(- auaga-ga-- --)GCUUGAC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUG--GGCA 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< --aaucaag- 4381 caaca-caaa cauuccuaaa aucccaacgc uuuucaa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CC(GGA 4621 -A)GGU-GU- GCUUGGAAUA UC-------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (17)-Theri 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (18)-Euthe 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (19)-Artio 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.A.melam 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aepyceros melampus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aepyceros melampus. ORGANISM Mitochondrion Aepyceros melampus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M86496 DEFINITION Aepyceros melampus mitochondrial 12S and 16S ribosomal RNA genes, and Phe-, Val-, and Leu-tRNA genes. SOURCE Mitochondrion Aepyceros melampus (chromosome Mitochondrion Aepyceros melampus) liver DNA. ORGANISM Mitochondrion Aepyceros melampus Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Antilopinae; Aepycerotini. REFERENCE 1 (bases 1 to 2680) AUTHORS Allard,M.W., Miyamoto,M.M., Jarecki,L., Kraus,F. and Tennant,M.R. TITLE DNA systematics and evolution of the artiodactyl family Bovidae JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 3972-3976 (1992) FEATURES Location/Qualifiers tRNA 1..68 /product="transfer RNA-Phe" /gene="Phe-tRNA" rRNA 69..1023 /product="12S ribosomal RNA" /gene="12S rRNA" tRNA 1024..1089 /product="transfer RNA-Val" /gene="Val-tRNA" rRNA 1090..2661 /product="16S ribosomal RNA" /gene="16S rRNA" tRNA 2662..>2680 /product="transfer RNA-Leu" /gene="Leu-tRNA" BASE COUNT 346 a 217 c 175 g 217 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uacAGGUU 661 (UGG-)U-CC U|AGCCU-UC CCG-UUGACU -C-CCAA-UA |AA-CU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCACCCCGGU GAGAA---UG C|CCU-Cuga --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--accaa -----)---- 1261 ---------- ---------- ---g--acu- a-aGAGGAGC |--------- gGGUAUCA-- 1321 -AGCACAC-- -----(acuu ---------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UGA C|ACCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AC AAAAAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AU-UGAcua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUUA-ACGG G-------aa uaCGGC|GUA AAACGUGUUU -A-agc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- --uuacacua aauaga--gu -----|UAAA ucCUAA-UUA ----AACU(G 2341 UAAAA)AGCC AU-------A AUUA-UaguG AAA------- ----guaaac -gAC(-GAAA 2401 -)GU|a---- ----acucua cuac------ -a-------- gcu-ga-cAC ACUAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CCUAAA-CAC 2521 A--AAUA-AU |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ua(aaac)a a---G-AUUA 2701 U-U|--C|GC C-AGAG-UAC UACCGGC(-- -AACG--)GC CCA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-CC CUUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AUUUCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aac- 3181 aa-)------ A-AGUAAGCA CAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aguau- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-A-AU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uc au---)---- ---------- ---------- AAG-AAaacc 4021 caau------ -----aACGA --AAGUC-AC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-U--GA -C--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-CUAAGA(- auaga-gu-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagug-ac- 4381 cauaa-ugc- --------ac uuaaaccu-- auu--aucac gca-uaagua auauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.ameri 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Antilocapra americana. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Antilocapra americana. ORGANISM Mitochondrion Antilocapra americana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M55540 DEFINITION Antilocapra americana mitochondrial Phe-, Val-, and Leu- (5' end) tRNA and 12S, and 16S rRNA genes. SOURCE Antilocapra americana liver mitochondrial cell line DH-alpha-5, clone pAAMMR 3.8-8. ORGANISM Mitochondrion Antilocapra americana Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Antilocapridae. REFERENCE 1 (bases 1 to 2684) AUTHORS Kraus,F. and Miyamoto,M.M. TITLE Rapid cladogenesis among the pecoran ruminants: Evidence from mitochondrial DNA sequences JOURNAL Systematic Zoology (1990) In press FEATURES Location/Qualifiers tRNA 1..67 /gene="Phe-tRNA" /product="transfer RNA-Phe" rRNA 68..1025 /gene="12S rRNA" /product="12S ribosomal RNA" tRNA 1026..1092 /gene="Val-tRNA" /product="transfer RNA-Val" rRNA 1093..2665 /gene="16S rRNA" /product="16S ribosomal RNA" tRNA 2666..2684 /gene="Leu-tRNA" /partial /product="transfer RNA-Leu" BASE COUNT 343 a 218 c 178 g 219 t 4255 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cauAGGUU 661 (UGG-)U-CC C|AGCCU-UC CUA-UUGACU -A-CUAA-UA |GA-CU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GAAGA---CG C|CCU-Uuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--caccu -----)---- 1261 ---------- ---------- ---g--aac- caaAAGGAGC |--------- uGGUAUCA-- 1321 -AGCACAC-- -----(auuu ---------- ---------- ---------- ------)--- 1381 ---GU|---A GCUUA--UGA C|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-UAUGGAC( ---------- ----GAAA)G UCUGA-CUA| 1561 A|-GUCA-U- AU-UGAuaa- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -GAC-CCU-- 1981 AGUUA-AUAG G-------aa uaCGGC|GUA AAGAGUGUUA -A-agc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- --ucacacua aauaga--gu -----|UAAA uuAUAA-CUA ----AGCU(G 2341 UAAAA)AGCC AC-------A GCUG-UaauA AAA------- ----auagac -aAC(-GAAA 2401 -)GU|g---- ----acucua caac------ -c-------- gcu-gaucAC ACUAC-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CAC 2521 A--GGUA-AU |UG|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uau(aaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-CC CUUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AACCCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A A-AAA)AGG- -----(aac- 3181 aa-)------ G-AGUAAGCA UAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----agcac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-G-UU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu uc---)---- ---------- ---------- AAG-AAcacu 4021 caa------- -----cACGA --AAGUU-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-GA-U--GA -C--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-CUAAGA(- auaga-gc-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCU 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua-aa- 4381 cacga-uac- --------ac cuaaacuu-- auu--cacac gua-uuaacc guacaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.kirki 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Madoqua kirki. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Madoqua kirki. ORGANISM Mitochondrion Madoqua kirki. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M86495 DEFINITION Madoqua kirki mitochondrial 12S and 16S ribosomal RNA genes, and Phe-, Val-, and Leu-tRNA genes. SOURCE Mitochondrion Madoqua kirki (chromosome Mitochondrion Madoqua kirki) liver DNA. ORGANISM Mitochondrion Madoqua kirki Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Antilopinae; Neotragini. REFERENCE 1 (bases 1 to 2676) AUTHORS Allard,M.W., Miyamoto,M.M., Jarecki,L., Kraus,F. and Tennant,M.R. TITLE DNA systematics and evolution of the artiodactyl family Bovidae JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 3972-3976 (1992) FEATURES Location/Qualifiers tRNA 1..68 /product="transfer RNA-Phe" /gene="Phe-tRNA" rRNA 69..1025 /product="12S ribosomal RNA" /gene="12S rRNA" tRNA 1026..1092 /product="transfer RNA-Val" /gene="Val-tRNA" rRNA 1093..2657 /product="16S ribosomal RNA" /gene="16S rRNA" tRNA 2658..>2676 /product="transfer RNA-Leu" /gene="Leu-tRNA" BASE COUNT 356 a 219 c 166 g 216 t 4256 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cacAGGUU 661 (UGG-)U-CC C|AGCCU-UC CUG-UUAGCU -U-CUAA-UA |GA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCACUCCAGU GAGAA---UG C|CCU-Ccaa --gu-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--aacaa -----)---- 1261 ---------- ---------- ---g--acc- a-aAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACACA- -----(aca- ---------- ---------- ---------- ------)--- 1381 --UGU|---A GCUCA--CGA C|ACCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AC AAAAAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUCA-U- AU-UUAuua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -GAC-CCA-- 1981 AGCUA-ACAA G-------aa caCGGC|GUA AAACGUGUUU -A-agc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- --ccacacua aauaga--gu -----|UAAA uuAAAA-UUA ----AACU(G 2341 UAAAA)AGCU AU-------A AUUU-UaauA AAA------- ----auaaau -aAC(-GAAA 2401 -)GU|a---- ----acucua aaac------ -a-------- gcu-ga-uAC ACUAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAC 2521 A--AAUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uau(aaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-UAC UACCGGC(-- -AACA--)GC CUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-CC CUUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUUACC AAUCCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aac- 3181 aa-)------ A-AGUAAGCA CAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uauac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-A-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uc uu---)---- ---------- ---------- AAG-AAaauu 4021 caca------ -----uACGA --AAGUU-AC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AG-U--GA -C--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-CUAAGA(- auaga-gu-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gaaua-ac- 4381 caaaa-ugc- --------ac uuaaaccu-- auu--uacac gca-cuaacc acauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUUA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.tauru 5213 bp RNA RNA 23-JAN-1982 DEFINITION Mitochondrion Bovine taurus (cow). ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Bovine taurus (cow). ORGANISM Mitochondrion Bovine taurus (cow). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5213) Corresponding GenBank entry: J01394 and V00654 Phylo:Mitochondria,Animal,Mammal,bovine AUTHORS Anderson,S., de Bruijn,M.H., Coulson,A.R., Eperon,I.C., Sanger,F. and Young,I.G. TITLE Complete sequence of bovine mitochondrial DNA. Conserved features of the mammalian mitochondrial genome JOURNAL J. Mol. Biol. 156 (4), 683-717 (1982) BASE COUNT 351 a 216 c 172 g 216 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cauAGGUU 661 (UGG-)U-CC C|AGCCU-UC CUG-UUAACU -C-UUAA-UA |AA-CU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCACCCCAGU GAGAA---UG C|CCU-Cuag --gu-u---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--auuaa -----)---- 1261 ---------- ---------- ---a--acu- a-aGAGGAGC |--------- uGGCAUCA-- 1321 -AGCACACA- -----(ccc- ---------- ---------- ---------- ------)--- 1381 --UGU|---A GCUCA--CGA C|GCCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( -ACG-)--GG AAa----C-A 1501 GCA|GUG-AC AAAAAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AU-UAAuua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGCUA-ACAG G-------ag uaCGGC|GUA AAACGUGUUA -A-agc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- --ccauacca aauagg--gu -----|UAAA uuCUAA-CUA ----AGCU(G 2341 UAAAA)AGCC AU-------G AUUA-AaauA AAA------- ----auaaau -gAC(-GAAA 2401 -)GU|g---- ----acccua caau------ -a-------- gcc-ga-cGC ACUAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAC 2521 A--GAUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- cau(aaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CUUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AAUUCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aaa- 3181 aa-)------ A-AGUAAGCG UAA-UUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----gauac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 A-A-AU-GG- GA-AGA--AA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ca cc---)---- ---------- ---------- AAG-AGaauc 4021 aag------- -----cACGA --AAGUU-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) C-AA-U--AA -C--CAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-CUAAGA(- auaga-gu-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaua-ga- 4381 uucag-ugc- --------au cuaacccu-- auu--uaaac gca-cuagcu acauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.trago 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Boselaphus tragocamelus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Boselaphus tragocamelus. ORGANISM Mitochondrion Boselaphus tragocamelus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M86494 DEFINITION Boselaphus tragocamelus mitochondrial 12S and 16S ribosomal RNA genes, and Phe-, Val-, and Leu-tRNA genes. SOURCE Mitochondrion Boselaphus tragocamelus (chromosome Mitochondrion Boselaphus tragocamelus) liver DNA. ORGANISM Mitochondrion Boselaphus tragocamelus Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Boselaphini. REFERENCE 1 (bases 1 to 2685) AUTHORS Allard,M.W., Miyamoto,M.M., Jarecki,L., Kraus,F. and Tennant,M.R. TITLE DNA systematics and evolution of the artiodactyl family Bovidae JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 3972-3976 (1992) FEATURES Location/Qualifiers tRNA 1..69 /product="transfer RNA-Phe" /gene="Phe-tRNA" rRNA 70..1025 /product="12S ribosomal RNA" /gene="12S rRNA" tRNA 1026..1092 /product="transfer RNA-Val" /gene="Val-tRNA" rRNA 1093..2666 /product="16S ribosomal RNA" /gene="16S rRNA" tRNA 2667..>2685 /product="transfer RNA-Leu" /gene="Leu-tRNA" BASE COUNT 353 a 209 c 165 g 229 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cauAGGUU 661 (UGG-)U-CC C|AGCCU-UC CUG-UUAACU -U-UUAA-UA |AA-UU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUCCCGGU GAGAA---UG C|CCU-Cuaa --gu-u---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uauaa -----)---- 1261 ---------- ---------- ---a--acc- a-aGAGGAGC |--------- uGGUAUCA-- 1321 -AGCUCAC-- -----(aucu ---------- ---------- ---------- ------)--- 1381 ---GU|---A GCUAA--CGA C|ACCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AU-UAAuua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGCUA-ACAG G-------aa uaCGGC|GUA AAAUGUGUUU -A-agc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -cuuacccca aauaga--gu -----|UAAA uuCUAG-CUA ----AGCU(G 2341 UAAAA)AGCC AU-------A GCUA-CuauA AAA------- ----auaaac -gAC(-GAAA 2401 -)GU|a---- ----acucua caac------ -a-------- gcu-ga-cAC ACUAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAC 2521 A--GAUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uac(aaac)a a---G-AUUA 2701 U-U|--C|GC C-AGAG-UAC UACCGGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AAUUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aau- 3181 aa-)------ A-AGUAAGCA CAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aacac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 A-A-AU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua uu---)---- ---------- ---------- AAG-AAaauc 4021 uua------- -----cACGA --AAGUU-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-C--AA -C--CAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-CUAGGA(- auaga-gu-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaua-aa- 4381 cauga-ugc- --------ac uuaaacuu-- auu--cuaaa gca-cuaauc auauaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.thoms 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Gazella thomsoni. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Gazella thomsoni. ORGANISM Mitochondrion Gazella thomsoni. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M86501 DEFINITION Gazella thomsoni mitochondrial 12S and 16S ribosomal RNA genes, and Phe-, Val-, and Leu-tRNA genes. SOURCE Mitochondrion Gazella thomsoni (chromosome Mitochondrion Gazella thomsoni) liver DNA. ORGANISM Mitochondrion Gazella thomsoni Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Antilopinae; Antilopini. REFERENCE 1 (bases 1 to 2678) AUTHORS Allard,M.W., Miyamoto,M.M., Jarecki,L., Kraus,F. and Tennant,M.R. TITLE DNA systematics and evolution of the artiodactyl family Bovidae JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 3972-3976 (1992) FEATURES Location/Qualifiers tRNA 1..68 /product="transfer RNA-Phe" /gene="Phe-tRNA" rRNA 69..1023 /product="12S ribosomal RNA" /gene="12S rRNA" tRNA 1024..1090 /product="transfer RNA-Val" /gene="Val-tRNA" rRNA 1091..2659 /product="16S ribosomal RNA" /gene="16S rRNA" tRNA 2660..>2678 /product="transfer RNA-Leu" /gene="Leu-tRNA" BASE COUNT 355 a 213 c 171 g 216 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cauAGGUU 661 (UGG-)U-CC C|AGCCU-UU CUG-UUGACU -U-UUAG-UA |AA-CU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCACUCCAGU GAGAA---UG C|CCU-Ucag --gu-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--aacaa -----)---- 1261 ---------- ---------- ---g--acc- a-aAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACAC-- -----(accu ---------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UGA C|GCCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AC AAAAAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-UAAuua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGCUA-ACAG A-------ag caCGGC|GUA AAACGUGUUU -A-agc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- --ccauacua aauaga--gu -----|UAAA uuAAAA-UUA ----AGCU(G 2341 UAAAA)AGCU CU-------A ACUU-UaauA AAA------- ----auaaac -gAC(-GAAA 2401 -)GU|a---- ----acucua aaau------ -a-------- gcu-ga-uAC ACUAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 A--GAUA-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- cau(aaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-UAC UACCGGC(-- -AACA--)GC CUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAUA-CC CUUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AAUCCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G --AAA)AGG- -----(agu- 3181 aa-)------ A-AGUAAGCA CAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aagac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-A-AU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uc uu---)---- ---------- ---------- AAG-AAaacu 4021 caa------- -----uACGA --AAGUU-GC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AG-C--AA -C--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-CUAAGA(- auaga-gu-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UCA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gagua-ac- 4381 uaaag-cau- --------ac ucaaacau-- auu--uaaau aua-acaacu acauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGACAA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.imber 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Tragelaphus imberbis. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Tragelaphus imberbis. ORGANISM Mitochondrion Tragelaphus imberbis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M86493 DEFINITION Tragelaphus imberbis mitochondrial 12S and 16S ribosomal RNAs and Phe-, Val-, and Leu-tRNA genes. SOURCE Mitochondrion Tragelaphus imberbis (chromosome Mitochondrion Tragelaphus imberbis) liver DNA. ORGANISM Mitochondrion Tragelaphus imberbis Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Tragolaphini. REFERENCE 1 (bases 1 to 2686) AUTHORS Allard,M.W., Miyamoto,M.M., Jarecki,L., Kraus,F. and Tennant,M.R. TITLE DNA systematics and evolution of the artiodactyl family Bovidae JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 3972-3976 (1992) FEATURES Location/Qualifiers tRNA 1..68 /product="transfer RNA-Phe" /gene="Phe-tRNA" rRNA 69..1024 /product="12S ribosomal RNA" /gene="12S rRNA" tRNA 1025..1091 /product="transfer RNA-Val" /gene="Val-tRNA" rRNA 1092..2667 /product="16S ribosomal RNA" /gene="16S rRNA" tRNA 2668..>2686 /product="transfer RNA-Leu" /gene="Leu-tRNA" BASE COUNT 352 a 215 c 169 g 220 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cauAGGCU 661 (UGG-)U-CC U|GGCCU-UC CUG-UUGUCU -G-UUAA-CA |AA-CU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCAUCCCAGU GAGAA---UG C|CCU-Ccag --gu-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--aacac -----)---- 1261 ---------- ---------- ---g--acc- a-aAAGGAGC |--------- uGGUAUCA-- 1321 -AGCACAC-- -----(accc ---------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UGA C|ACCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUCGA-CUU| 1561 A|-GUUA-U- GU-UAAuua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGCUA-ACAG G-------ag uaCGGC|GUA AAAUGUGUUA -A-agc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- --ucacacua aauaga--gc -----|UAAA ucUUAA-UUA ----AGCU(G 2341 UAAAA)AGCC AU-------A AUUA-UuauA AAA------- -----uaaau -aAC(-GAAG 2401 -)GU|a---- ----gcucua caac------ -a-------- gcu-ga-cAC ACUAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 A--GAUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uau(aaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAUA-CC CCCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AAUUCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aac- 3181 aa-)------ A-AGUAAGCG UAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aguac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 A-A-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(aga uc---)---- ---------- ---------- AAG-AAaacu 4021 aaua------ -----uACGA --AAGUU-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-AA-U--AA -C--UAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-CUAAGA(- acaga-gu-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaua-aa- 4381 uauaa-ugu- --------cc caaaaccu-- auu--cacau gca-uuaaca auauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.D.pygar 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Damaliscus pygargus str. was Damaliscus dorcas. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Damaliscus pygargus str. was Damaliscus dorcas. ORGANISM Mitochondrion Damaliscus pygargus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M86499 DEFINITION Damaliscus dorcas mitochondrial 12S and 16S ribosomal RNA genes, and Phe-, Val-, and Leu-tRNA genes. SOURCE Mitochondrion Damaliscus dorcas (chromosome Mitochondrion Damaliscus dorcas) liver DNA. ORGANISM Mitochondrion Damaliscus dorcas Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Hippotraginae; Alcelaphini. REFERENCE 1 (bases 1 to 2674) AUTHORS Allard,M.W., Miyamoto,M.M., Jarecki,L., Kraus,F. and Tennant,M.R. TITLE DNA systematics and evolution of the artiodactyl family Bovidae JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 3972-3976 (1992) FEATURES Location/Qualifiers tRNA 1..68 /product="transfer RNA-Phe" /gene="Phe-tRNA" rRNA 69..1021 /product="12S ribosomal RNA" /gene="12S rRNA" tRNA 1022..1088 /product="transfer RNA-Val" /gene="Val-tRNA" rRNA 1089..2655 /product="16S ribosomal RNA" /gene="16S rRNA" tRNA 2656..>2674 /product="transfer RNA-Leu" /gene="Leu-tRNA" BASE COUNT 340 a 230 c 180 g 203 t 4260 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC C|AGCCU-UC CUG-UUAACU -U-UCAA-UA |GG-CU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCGGU GAGAA---UG C|CCU-Cuga --gu-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--aacaa -----)---- 1261 ---------- ---------- ---g--acc- a-uGAGGAGC |--------- gGGUAUCA-- 1321 -AGCACAC-- -----(acuu ---------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UGA C|ACCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AC AAAAAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUCA-U- AU-UGAuua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGCUA-ACAG G-------ag uaCGGC|GUA AAAUGUGUUA -A-agc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- --cuacauca aauaga--gu -----|UAAA ucCUAA-UUA ----AGCC(G 2341 UAAAA)AGCC AU-------A AUUA-UaacA AAA------- -----uaaau -gAC(-GAAA 2401 -)GU|a---- ----acccua caac------ -a-------- gcu-ga-cAC ACUAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 A--AAUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- caa(aaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-UAC UACAGGC(-- -CACA--)GC CCA--AAACU CAAGGGAC-U 2761 UG|GCGGUG- CUUUAUA-CC CUUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AGUCCUUGCU ---------- ---------- 2881 (-------aa ug-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CG AAC-|CCU(A --AAA)AGG- -----(aac- 3181 ag-)------ A-AGUAAGCA UAA-CCAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aacac- 3781 ---------G UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC CAU------- ---------G 3841 G-A-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uc uu---)---- ---------- ---------- AAG-AAaaca 4021 uca------- -----cACGA --AAGUU-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-U--AA -C--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-CUGAAA(- auaga-gu-- --)GCUCAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua-cc- 4381 cagaa-ugc- --------au ucaacccu-- auu---acac gca-ucacuc augcga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGACAA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.hircu 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Capra hircus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Capra hircus. ORGANISM Mitochondrion Capra hircus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M55541 DEFINITION Capra hircus Phe-, Val-, and Leu- (5' end) tRNA, and 12S and 16S ribosomal RNA genes. SOURCE Capra hircus brain mitochondrial cell line JM109 DNA, clone pCHIMR 3.4-15. ORGANISM Mitochondrion Capra hircus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae. REFERENCE 1 (bases 1 to 2682) AUTHORS Kraus,F. and Miyamoto,M.M. TITLE Rapid cladogenesis among the pecoran ruminants: Evidence from mitochondrial DNA sequences JOURNAL Systematic Zoology (1990) In press FEATURES Location/Qualifiers tRNA 1..68 /gene="Phe-tRNA" /product="transfer RNA-Phe" rRNA 69..1024 /gene="12S rRNA" /product="12S ribosomal RNA" tRNA 1025..1091 /gene="Val-tRNA" /product="transfer RNA-Val" rRNA 1092..2663 /gene="16S rRNA" /product="16S ribosomal RNA" tRNA 2664..2682 /gene="Leu-tRNA" /partial /product="transfer RNA-Leu" BASE COUNT 350 a 229 c 172 g 205 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cauAGGUU 661 (UGG-)U-CC C|AGCCU-UC CUG-UUAACU -C-UCAA-CA |GA-CU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCGCCCCGGU GAGUA--aCG C|CCU-Ccaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--aauaa -----)---- 1261 ---------- ---------- ---g--acu- a-aGAGGAGC |--------- aGGUAUCA-- 1321 -AGCACAC-- -----(aucu c--------- ---------- ---------- ------)--- 1381 ---GU|---A GCUUA--CAA C|GCCUC-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( UACG-)--GG AGa----C-A 1501 GCA|GUG-AC AAAAAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCCA-U- GU-UGAcca- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGCUA-ACAG G-------aa uaCGGC|GUA AAACGUGUUA -A-agc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- --cuacauca aauaga--gu -----|UAAA uuCUAA-UUA ----AACU(G 2341 UAAAA)AGCC AU-------A AUUA-CaacA AAA------- ----auagau -gAC(-GAAA 2401 -)GU|a---- ----acccua cugc------ -a-------- gcu-ga-uAC ACUAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAC 2521 A--AAUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- cag(aaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-UAC UACCGGC(-- -AACA--)GC CCG--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-CC CUUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AAUCCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aac- 3181 aa-)------ A-AGUAAGCU CAA-UCAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aacac- 3781 ---------A UAAAGA-CGU U-AGGUCAAG G|UGUA|ACC CAU------- ---------G 3841 G-A-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-cc uu---)---- ---------- ---------- AAG-AAaauu 4021 aa-------- -----uACGA --AAGCC-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-AA-U--GA -C--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-CUAAGA(- auaga-gu-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua-aa- 4381 uacaa-ugc- --------ac ucaagccu-- auu--aacac gca-ucaacu acauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.O.aries 5213 bp RNA RNA 01-AUG-1998 DEFINITION Mitochondrion Ovis aries.; . ACCESSION AF0104 6 KEYWORDS . SOURCE Mitochondrion Ovis aries. ORGANISM Mitochondrion Ovis aries. REFERENCE 1 (bases 1 to 16616) AUTHORS Hiendleder,S., Mainz,K., Plante,Y. and Lewalski,H. TITLE are derived from two different ancestral maternal sources: no evidence for contributions from Urial and Argali sheep Analysis of mitochondrial DNA indicates that domestic sheep JOURNAL J. Hered. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 16616) AUTHORS Hiendleder,S., Wassmuth,R. and Lewalski,H. TITLE Complete mitochondrial DNA sequence of the domestic sheep (Ovis aries) and comparative data from another haplotype JOURNAL Unpublished STANDARD No information REFERENCE 3 (bases 1 to 16616) AUTHORS Hiendleder,S., Wassmuth,R. and Lewalski,H. TITLE Direct Submission JOURNAL Submitted (26-JUN-1997) Animal Breeding and Genetics, Justus-Liebig-University, Ludwigstr. 21B, Giessen 35390, Germany STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF010406 BASE COUNT 353 a 221 c 170 g 214 t 4255 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uauAGGUU 661 (UGG-)U-CC C|AGCCU-UC CUG-UUAACU -U-UCAA-UA |GA-CU--UA -UAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCGCCCCGGU GAGUA--aCG C|CCU-Ucga --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--acaca g----)---- 1261 ---------- ---------- ---g--acu- a-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACAC-- -----(acuc uu-------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--CAA C|GCCuu-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUA-AC AAAAAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUCA-U- AU-UGAcca- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -GAC-CCA-- 1981 AGCUA-ACAG G-------ag uaCGGC|GUA AAGCGUGUUA -A-agc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--u ca-uac-u-a aauaga--gu -----|UAAA uuUUAA-UUA ----AACU(G 2341 UAAAA)AGCC AU-------A AUUA-UaacA AAA------- ----auaaau -gAC(-GAAA 2401 -)GU|a---- ----acccua caau------ -a-------- gcu-ga-uAC ACCAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAC 2521 A--AAUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uaa(aaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-UAC UACC-GC(-- -AACA--)GC CCG--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-CC CUUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AAUCCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AAGg -----(gac- 3181 aa-)------ A-AGUAAGCU CAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aacac- 3781 ---------A UAAAGA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c cc---)---- ---------- ---------- AAG-AAaauu 4021 uaa------- -----uACGA --AAGCC-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-AA-U--AG -C--CAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-CUAAGA(- auaga-gu-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UCA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua-aa- 4381 uauga-uau- --------ac uuaaaccu-- auu--uacau aua-ucaacc acacga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.maxwe 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Cephalophus maxwellii. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Cephalophus maxwellii. ORGANISM Mitochondrion Cephalophus maxwellii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M86498 DEFINITION Cephalophus maxwelli mitochondrial 12S and 16S ribosomal RNA genes, and Phe-, Val-, and Leu-tRNA genes. SOURCE Mitochondrion Cephalophus maxwelli (chromosome Mitochondrion Cephalophus maxwelli) liver DNA. ORGANISM Mitochondrion Cephalophus maxwelli Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Cephalophinae; Cephalophini. REFERENCE 1 (bases 1 to 2681) AUTHORS Allard,M.W., Miyamoto,M.M., Jarecki,L., Kraus,F. and Tennant,M.R. TITLE DNA systematics and evolution of the artiodactyl family Bovidae JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 3972-3976 (1992) FEATURES Location/Qualifiers tRNA 1..69 /product="transfer RNA-Phe" /gene="Phe-tRNA" rRNA 70..1025 /product="12S ribosomal RNA" /gene="12S rRNA" tRNA 1026..1092 /product="transfer RNA-Val" /gene="Val-tRNA" rRNA 1093..2662 /product="16S ribosomal RNA" /gene="16S rRNA" tRNA 2663..>2681 /product="transfer RNA-Leu" /gene="Leu-tRNA" BASE COUNT 351 a 223 c 167 g 215 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cauAGGUU 661 (UGG-)U-CC C|AGCCU-UC CUG-UUAACU -U-UCAA-UA |AG-CU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCACCCCGGU GAGAA---UG C|CCU-Cuaa --gu-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uccaa -----)---- 1261 ---------- ---------- ---g--acu- a-aGAGGAGC |--------- gGGUAUCA-- 1321 -AGCUCAC-- -----(auuc ---------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--CAA C|ACCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AC AAAAAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AU-UGAuua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGCUA-ACAG G-------aa uaCGGC|GUA AAACGUGUUA -A-agc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- --cuauacca aauaga--gu -----|UAAA uuCUAA-UUA ----AACU(G 2341 UAAAA)AGUC AU-------A AUUA-CaauA AAA------- ----auaaac -gAC(-GAAA 2401 -)GU|a---- ----gcucua caau------ -a-------- gcu-ga-uAC ACUAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CCUAAA-CAC 2521 A--AAUA-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- caa(aaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-UAC UACCGGC(-- -AACA--)GC CUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-CC CUUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA G-ACCUCACC AAUUCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(agc- 3181 aa-)------ A-AGUAAGCG CAA-UCAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aacac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 A-A-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu uc---)---- ---------- ---------- AAG-AAaacc 4021 caca------ -----uACGA --AAGUU-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-U--AA -C--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-CUAAGA(- auaga-gu-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaua-ac- 4381 uacaa-cgc- --------ac uuaaaccu-- acu--uacac gcg-ucaauc auauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.K.ellip 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Kobus ellipsiprymnus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Kobus ellipsiprymnus. ORGANISM Mitochondrion Kobus ellipsiprymnus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M86497 DEFINITION Kobus ellipsiprymnus mitochondrial 12S and 16S ribosomal RNA genes, and Phe-, Val-, and Leu-tRNA genes. SOURCE Mitochondrion Kobus ellipsiprymnus (chromosome Mitochondrion Kobus ellipsiprymnus) liver DNA. ORGANISM Mitochondrion Kobus ellipsiprymnus Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Hippotraginae; Reduncini. REFERENCE 1 (bases 1 to 2678) AUTHORS Allard,M.W., Miyamoto,M.M., Jarecki,L., Kraus,F. and Tennant,M.R. TITLE DNA systematics and evolution of the artiodactyl family Bovidae JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 3972-3976 (1992) FEATURES Location/Qualifiers tRNA 1..66 /product="transfer RNA-Phe" /gene="Phe-tRNA" rRNA 67..1019 /product="12S ribosomal RNA" /gene="12S rRNA" tRNA 1020..1086 /product="transfer RNA-Val" /gene="Val-tRNA" rRNA 1087..2659 /product="16S ribosomal RNA" /gene="16S rRNA" tRNA 2660..>2678 /product="transfer RNA-Leu" /gene="Leu-tRNA" BASE COUNT 352 a 218 c 169 g 214 t 4260 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cauAGGUU 661 (UGG-)U-CC C|AGCCU-UC CUG-UUAACU -C-CCAA-UA |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCACCCCGGU GAGAA---UG C|CCU-Cuga --gu-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--aacag -----)---- 1261 ---------- ---------- ---g--acu- a-gGAGGAGU |--------- aGGUAUCA-- 1321 -AGCACAC-- -----(acuc ---------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UGA C|ACCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AC AAAAAUUAAG C-CAUAAAC( ---------- ----GGAA)G UUUGA-CUA| 1561 A|-GUUA-U- AU-UGAcaa- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGCUA-ACAG G-------aa aaCGGC|GUA AAACGUGUUU -A-agc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- --ccuuacca aauaga--gu -----|UAAA ucUUAA-UUA ----AACU(G 2341 UAAAA)AGUC AU-------A AUUA-UaacA AAA------- ----auaaac -aAC(-GAAA 2401 -)GU|a---- ----acucua caac------ -a-------- gcu-ga-cAC ACUAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 A--AAUG-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ac(aaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-UAC UACCGGC(-- -AAUA--)GC CUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AAUCCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(aau- 3181 aa-)------ A-AGUAAGCA UAA-UCAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aacgc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 G-A-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uc uc---)---- ---------- ---------- AAG-AAaauu 4021 uaa------- -----uACGA --AAGUU-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) C-AA-U--AA -C--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-CUAAGA(- auaga-gu-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UCA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaua-ac- 4381 uacgg-uau- --------ac ccaaaacu-- auu---auac aca-ccaagu auauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.O.gazel 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Oryx gazella. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Oryx gazella. ORGANISM Mitochondrion Oryx gazella. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M86500 DEFINITION Oryx gazella mitochondrial 12S and 16S ribosomal RNA genes, and Phe-, Val-, and Leu-tRNA genes. SOURCE Mitochondrion Oryx gazella (chromosome Mitochondrion Oryx gazella) liver DNA. ORGANISM Mitochondrion Oryx gazella Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Cephalophinae; Hippotragini. REFERENCE 1 (bases 1 to 2680) AUTHORS Allard,M.W., Miyamoto,M.M., Jarecki,L., Kraus,F. and Tennant,M.R. TITLE DNA systematics and evolution of the artiodactyl family Bovidae JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 3972-3976 (1992) FEATURES Location/Qualifiers tRNA 1..68 /product="transfer RNA-Phe" /gene="Phe-tRNA" rRNA 69..1023 /product="12S ribosomal RNA" /gene="12S rRNA" tRNA 1024..1090 /product="transfer RNA-Val" /gene="Val-tRNA" rRNA 1091..1661 /product="16S ribosomal RNA" /gene="16S rRNA" tRNA 2662..>2680 /product="transfer RNA-Leu" /gene="Leu-tRNA" BASE COUNT 348 a 222 c 170 g 215 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cauAGGUU 661 (UGG-)U-CC C|AGCCU-UC UUG-UUAACU -U-UCAA-UA |GA-CU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCGCCCCGGU GAGAA---UG C|CCU-Cuaa --gu-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--aacua -----)---- 1261 ---------- ---------- ---g--acc- a-uGAGGAGC |--------- gGGUAUCA-- 1321 -AGCACACU- -----(acu- ---------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--UGA C|ACCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAa----C-A 1501 GCA|GUG-AC AAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCCA-U- AU-UGAcua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGCUA-ACAA G-------aa uaCGGC|GUA AAACGUGUUA -A-agc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- --cuacacca aauaga--gu -----|UAAG uuUUUA-UUA ----AACU(G 2341 UAAAA)AGUC AU-------A AUUA-CaauA AAA------- ----auaaac -gAC(-GAAA 2401 -)GU|a---- ----acucua caac------ -a-------- gcu-ga-uAC ACCAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 A--AAUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ua(aaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-UAC UACCGGC(-- -AACG--)GC CCA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-CC CUUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCCUGCC AAUCCUUGCU ---------- ---------- 2881 (-------aa ug-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A A-AAA)AGG- -----(aac- 3181 aa-)------ A-AGUAAGCA UAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uacac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-A-AU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-cu uu---)---- ---------- ---------- AAG-AAaacc 4021 ca-------- -----cACGA --AAGUU-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-U--AA -C--CAAAG- -GAGGAUUUA 4141 G-U--AGUaA G-CUAAGA(- auaga-gu-- --)GCUUAGC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UCA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaguaauu- 4381 uacga-ugc- --------ac ucaaacuu-- auu---acau gca-ccaacc auauaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.unico 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Cervus unicolor. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Cervus unicolor. ORGANISM Mitochondrion Cervus unicolor. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M35875 DEFINITION C.unicolor mitochondrial Phe-, Val-tRNA, 12S, and 16S rRNA genes, complete, and Leu-tRNA gene, 5' end. SOURCE C.unicolor liver mitochondrion cell line DH-alpha-5 DNA, clone PCUNMR 9.0-18. ORGANISM Mitochondrion Cervus unicolor Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Cervinae. REFERENCE 1 (bases 1 to 2682) AUTHORS Miyamoto,M.M., Kraus,F. and Ryder,O.A. TITLE Phylogeny and evolution of antlered deer determined from mitochondrial DNA sequence JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87, 6127-6131 (1990) COMMENT Draft entry and computer-readable sequence for [Proc. Natl. Acad. Sci. U.S.A. (1990) In press] kindly submitted by M.M.Miyamoto, 03-JUL-1990. FEATURES Location/Qualifiers tRNA 1..69 /note="Phe-tRNA" rRNA 70..1024 /note="12S ribosomal RNA" tRNA 1025..1091 /note="Val-tRNA" rRNA 1092..2663 /note="16S ribosomal RNA" tRNA 2664..>2682 /note="Leu-tRNA" BASE COUNT 352 a 220 c 168 g 215 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uacAGGUU 661 (UGG-)U-CC C|AGCCU-UC CUA-UUAACC -C-UUAA-UA |GA-CU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GAAAA---UG C|CCC-Cuaa --gu-u---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--aauaa -----)---- 1261 ---------- ---------- ---g--acu- a-aGAGGAGC |--------- uGGUAUCA-- 1321 -AGCACAC-- -----(aucc ---------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--CGA C|ACCUU-GC --|------- (-aca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCCA-U- AU-UAAuca- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUUA-AUAG G-------ca caCGGC|GUA AAGCGUGUUA -A-agc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- --cuauuuca aauaaa--gu -----|UAAA cuCCAA-UUA ----AGCU(G 2341 UAAAA)AGCC AU-------A AUUG-CaacA AAA------- ----auaaac -aAC(-GAAA 2401 -)GU|a---- ----acuuua caac------ -c-------- gcu-ga-aAC ACGAU-AGCU 2461 A-GGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CUUAAA-CAC 2521 A--AAUA-GU |UG|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ugu(aaac)a a---A-ACUA 2701 U-U|--C|GC C-AGAG-UAC UACCGGC(-- -AAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-CC CUUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AUUCCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(uac- 3181 aa-)------ A-AGUAAGCA CAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aauac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-A-AC-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au cu---)---- ---------- ---------- AAG-AAaauc 4021 caa------- -----cACGA --AAGUU-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-AA-U--AA -C--CAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-CUAAGA(- auaga-gu-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua-gg- 4381 cacaa-uac- --------ac ucaaauuu-- auu--uacac gua-uuaauc auauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.H.inerm 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Hydropotes inermis. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Hydropotes inermis. ORGANISM Mitochondrion Hydropotes inermis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M35876 DEFINITION H.inermis mitochondrial Phe-, Val-tRNA, 12S, and 16S rRNA genes, complete, and Leu-tRNA gene, 5' end. SOURCE H.inermis liver and spleen mitochondrion cell line DH-alpha-5 DNA, clone PHINMR 4.0-6. ORGANISM Mitochondrion Hydropotes inermis Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Odocoileinae. REFERENCE 1 (bases 1 to 2680) AUTHORS Miyamoto,M.M., Kraus,F. and Ryder,O.A. TITLE Phylogeny and evolution of antlered deer determined from mitochondrial DNA sequence JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87, 6127-6131 (1990) COMMENT Draft entry and computer-readable [or printed] sequence for [Proc. Natl. Acad. Sci. U.S.A. (1990) In press] kindly submitted by M.M.Miyamoto, 03-JUL-1990. FEATURES Location/Qualifiers tRNA 1..70 /note="Phe-tRNA" rRNA 71..1027 /note="12S ribosomal RNA" tRNA 1028..1094 /note="Val-tRNA" rRNA 1095..2661 /note="16S ribosomal RNA" tRNA 2662..>2680 /note="Leu-tRNA" BASE COUNT 353 a 200 c 174 g 230 t 4256 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC C|AGCCU-UC CUA-UUGACC -U-UUAA-UA |GA-CU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUCCCAGU GAAAA---UG C|CCU-Ccaa --gu-u---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--aauaa -----)---- 1261 ---------- ---------- ---g--acu- a-aGAGGAGC |--------- uGGUAUCA-- 1321 -AGCACAC-- -----(accc ---------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UGA C|ACCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCCA-U- AU-UAAuua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUUA-AUAG G-------ca uaCGGC|GUA AAGCGUGUUA -A-agc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -acauauaaa aauaga--gu -----|UAAA cuUUAA-UUA ----AGCU(G 2341 UAAAA)AGCC AU-------A AUUA-UuaaC GAA------- ---aauaaau -aAC(-GAAA 2401 -)GU|a---- ----acuuua caau------ -c-------- gcu-ga-aAC AUGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAC 2521 A--AAUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uaa(uaac)a a---A-ACUG 2701 U-U|--C|GC C-AGAG-UAC UACCGGC(-- -AAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CUUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUCACC ACCCCUUGCU ---------- ---------- 2881 (-------aa ug-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(agc- 3181 aa-)------ A-AGUAAGCA UAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aauac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au uu---)---- ---------- ---------- AAG-AAaacu 4021 uaa------- -----uACGA --AAGUU-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-AA-U--AA -C--CAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-CUAAGA(- auaga-gu-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUA--GGCA 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaua-ag- 4381 cacaa-uac- --------gc uuaaauuu-- auu--aguau gua-uaaacu guauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.reeve 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Muntiacus reevesi. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Muntiacus reevesi. ORGANISM Mitochondrion Muntiacus reevesi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M35877 DEFINITION M.reevesi mitochondrial Phe-, Val-tRNA, 12S, and 16S rRNA genes, complete, and Leu-tRNA gene, 5' end. SOURCE M.reevesi liver and brain mitochondrion cell line JM109 DNA, clone PMREMR 4.8-16. ORGANISM Mitochondrion Muntiacus reevesi Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Cervulinae. REFERENCE 1 (bases 1 to 2682) AUTHORS Miyamoto,M.M., Kraus,F. and Ryder,O.A. TITLE Phylogeny and evolution of antlered deer determined from mitochondrial DNA sequence JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87, 6127-6131 (1990) COMMENT Draft entry and computer-readable sequence for [Proc. Natl. Acad. Sci. U.S.A. (1990) In press] kindly submitted by M.M.Miyamoto, 03-JUL-1990. FEATURES Location/Qualifiers tRNA 1..69 /note="Phe-tRNA" rRNA 70..1028 /note="12S ribosomal RNA" tRNA 1029..1196 /note="Val-tRNA" rRNA 1197..2664 /note="16S ribosomal RNA" tRNA 2659..>2682 /note="Leu-tRNA" BASE COUNT 347 a 210 c 172 g 230 t 4254 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uauAGGUU 661 (UGG-)U-CC C|AGCCU-UC CUA-UUAACC -C-UUAA-UA |GA-CU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCAUCCCAGU GAAAA---UG C|CCU-Cuaa --gu-u---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--aauaa -----)---- 1261 ---------- ---------- ---g--acu- a-aGAGGAGC |--------- uGGUAUCA-- 1321 -AGCACAC-- -----(aucc ---------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--CGA C|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AC AAAAAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCCA-U- AU-UAAuua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUUA-AUAG G-------ua uaCGGC|GUA AAGCGUGUUA -A-agc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -cuauuucca aauaaa--gc -----|UAAA uuUCAA-UUA ----AGCU(G 2341 UAAAA)AGCC AU-------A AUUG-CaacA AAA------- ----auaaau -aAC(-GAAA 2401 -)GU|a---- ----acuuua cagu------ -u-------- gcu-ga-aAC ACGAU-AGCU 2461 A-GGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-CAC 2521 A--AAUA-GU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------c cac(aaac)a a---A-ACUA 2701 U-U|--C|GC C-AGAG-UAC UACCGGC(-- -AAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-CC CUUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA G-ACCUCACC AUUCCUCGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aau- 3181 aa-)------ A-AGUAAGCG CAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aauac- 3781 ---------G UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-G-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ac uu---)---- ---------- ---------- AAG-AAuaau 4021 ucaua----- -----uACGA --AAGUU-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-AA-U--AA -C--CAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-CUAAGA(- auaga-gu-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua-ag- 4381 uacga-uau- --------gc ucaaacuu-- auu--uacau aua-uuaacc auauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.Maza.sp 5213 bp RNA RNA 03-MAR-1998 DEFINITION Mitochondrion Mazama sp.; 12S ribosomal RNA; 12S rRNA. ACCESSION AJ0000 0 KEYWORDS 12S ribosomal RNA; 12S rRNA. SOURCE Mitochondrion Mazama sp. ORGANISM Mitochondrion Mazama sp. REFERENCE 1 (bases 1 to 413) AUTHORS Randi,E., Mucci,N., Pierpaoli,M. and Douzery,E. TITLE New phylogenetic perspectives on the Cervidae (Artiodactyla) are provided by the mitochondrial cytochrome b gene JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 413) AUTHORS Douzery,E. TITLE Direct Submission JOURNAL Submitted (03-JUL-1997) Douzery E., Laboratoire de Paleontologie, Paleobiologie et Phylogenie, Institut des Sciences de l'Evolution - CC064, Universite Montpellier II - Place E. Bataillon, 34 095 Montpellier Cedex 5, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AJ000030 BASE COUNT 151 a 97 c 72 g 93 t 4800 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC C|AGCCU-UC CUA-UUAACC -C-CUAG-CA |GA-CU--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- ACAUUCCAGU GAAAA---UG C|CCU---cc -aaa-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--aauaa a----)---- 1261 ---------- ---------- --au----c- a-agAGGAGC |--------- uGGUAUCA-- 1321 -AGCUCAC-- -----(acu- c--------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UGA C|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG -aaa---C-A 1501 GCA|GUG-AU AAAAAUUAAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- GC-UAA---- ---------- ---------- (--uua---- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGCUA-AUAG G-------ca caCGGC|GUA AAGCGUGUu- -u-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------aaac -acuaugcca aauaaa--gu -----|UAAA CUCUAA-UUA ----AGCU(G 2341 UAAAA)AGC| CAU------A AUCA-AGACG AAA------- ----auaaau -AAC(-GAAA 2401 -)GU|a---- ----acuuua uaaucgcu-g aa-------- --------AC ACGAU-AGCU 2461 A-AGA---UC CA~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~-~~ |~~|~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ 2701 ~~~|~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ 2821 ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 (~~~~---~~ ~~-)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~|~~~ 3121 |~~|~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~(~ ~-~~~)~~~~ ~~~~~(~~~- 3181 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3241 ~~)<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~>~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~-~)~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~|~~~ ~~~------- -------~~~ 3841 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~>(~~~ ~~~-~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~-~(~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.O.virgi 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Odocoileus virginianus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Odocoileus virginianus. ORGANISM Mitochondrion Odocoileus virginianus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M35874 DEFINITION O.virginianus mitochondrial Phe-, Val-tRNA, 12S and 16S rRNA, genes, complete, and Leu-tRNA gene, 5' end. SOURCE O.virginianus brain mitochondrial cell line JM109 DNA, clone POVIMR 4.1-19. ORGANISM Mitochondrion Odocoileus virginianus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Odocoileinae. REFERENCE 1 (bases 1 to 2677) AUTHORS Miyamoto,M.M., Kraus,F. and Ryder,O.A. TITLE Phylogeny and evolution of antlered deer determined from mitochondrial DNA sequence JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87, 6127-6131 (1990) COMMENT Draft entry and computer-readable sequence for [Proc. Natl. Acad. Sci. U.S.A. (1990) In press] kindly submitted by M.M.Miyamoto, 03-JUL-1990. FEATURES Location/Qualifiers tRNA 1..69 /note="Phe-tRNA" rRNA 70..1022 /note="12S ribosomal RNA" tRNA 1023..1091 /note="Val-tRNA" rRNA 1092..2658 /note="16S ribosomal RNA" tRNA 2659..>2677 /note="Leu-tRNA" BASE COUNT 346 a 211 c 171 g 225 t 4260 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cagAGGUU 661 (UGG-)U-CC C|AGCCU-UC CUA-UUAAUC -C-CUAG-CA |GA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- uCAUCCCAGU GAAAA---UG C|CCU-Ccaa --gu-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--aauaa -----)---- 1261 ---------- ---------- ---a--acu- a-aGAGGAGC |--------- uGGUAUCA-- 1321 -AGCUCAC-- -----(accc ---------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UGA C|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUCA-U- GC-UAAuua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUUA-AUAG G-------ca caCGGC|GUA AAGCGUGUUU -A-agc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- --cuaugcca aauaga--gu -----|UAAA cuCCAA-UUA ----AGCU(G 2341 UAAAA)AGCC AU-------A AUCA-AgacG AAA------- ----auaaau -aAC(-GAAA 2401 -)GU|a---- ----acuuua caac------ -c-------- gcu-ga-aAC ACGAU-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 A--AAUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uau(aaac)a a---A-ACUA 2701 U-U|--C|GC C-AGAG-UAC UACCGGC(-- -AAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-CC CUUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA G-ACCUUACC ACCCCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aac- 3181 aa-)------ A-AGUAAGCA CAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uauac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-A-GU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au cu---)---- ---------- ---------- AAG-AAaacu 4021 cuu------- -----uACGA --AAGUU-AC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-AG-U--AA -C--CAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-CUAAGA(- auaga-gu-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaua-gg- 4381 cacaa-uac- --------ac uuaaauuu-- aau--uauac gua-uuaauc auauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAAG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.napu 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Tragulus napu. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Tragulus napu. ORGANISM Mitochondrion Tragulus napu. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M55539 DEFINITION Tragulus napu mitochondrion Phe-, Val, and Leu-tRNA (5' end) and 12S and 16S ribosomal RNA genes. SOURCE Tragulus napu mitochondrial cell line DH-alpha-5 DNA. ORGANISM Mitochondrion Tragulus napu Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Artiodactyla; Ruminantia; Tragulina; Tragulidae. REFERENCE 1 (bases 1 to 2691) AUTHORS Kraus,F. and Miyamoto,M.M. TITLE Rapid cladogenesis among the pecoran ruminants: Evidence from mitochondrial DNA sequences JOURNAL Systematic Zoology (1990) In press FEATURES Location/Qualifiers tRNA 1..70 /gene="Phe-tRNA" /product="transfer RNA-Phe" rRNA 71..1030 /gene="12S rRNA" /product="12S ribosomal RNA" tRNA 1031..1097 /gene="Val-tRNA" /product="transfer RNA-Val" rRNA 1098..2672 /gene="16S rRNA" /product="16S ribosomal RNA" tRNA 2673..2691 /gene="Leu-tRNA" /partial /product="transfer RNA-Leu" BASE COUNT 342 a 228 c 191 g 199 t 4253 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cacAGGUU 661 (UGG-)U-CC U|AGCCU-UU CCA-UUGGCU -C-UAAA-CA |GA-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCAUCCUCGU GAAAA---UG C|CCC-Aagg --gu-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--ugcaa -----)---- 1261 ---------- ---------- ---g--aca- c-aAAGGAGC |--------- gGGCAUCA-- 1321 -AGCACGCC- -----(aaua g--------- ---------- ---------- ------)--- 1381 --GGC|---A GCUUA--UGA C|GCCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUCA-U- GU-UGAaca- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -GAC-CCG-- 1981 AGUUA-AUGG A-------ca caCGGC|GUA AAGCGUGUUA -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- gaauaaauaa aauaag--gu -----|UAAA auUUGA-UUA ----AGAU(G 2341 UAAAA)AGCC AC-------A GUCA-AaucA AAA------- ----auaaac -gAC(-GAAA 2401 -)GU|g---- ----aucuua acac------ -a-------- uaccga-cAC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 A--AAUA-GC |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- auu(aaac)a a---A-ACUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-CC CCCCUAGA|G GAGCCUGU-U |CUGUG--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AACCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A A-AAA)AGG- -----(aac- 3181 aa-)------ A-AGUAAGCU UAA-CCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaugc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------G 3841 G-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(cuc aca--)---- ---------- ---------- AAG-AAua-- 4021 ---------- -----uACGA --AAGUU-CU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-GA-C--GA -C--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA G-CUAGGA(- auaga-gu-- --)GCUUAGC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUA--GGCU 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua-ca- 4381 cccaa-uac- -------ccc cuaaaccu-- acu--aaccg gua-uuagca gcauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-U AUA-CU(GGA 4621 -A)AGU-GU- ACUUGGAUAA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.H.liber 5213 bp RNA RNA 01-JUN-1997 DEFINITION Mitochondrion Hexaprotodon liberiensis.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION Y08811 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Hexaprotodon liberiensis. ORGANISM Mitochondrion Hexaprotodon liberiensis. REFERENCE 1 (bases 1 to 967) AUTHORS Montgelard,C., Catzeflis,F.M. and Douzery,E. TITLE mitochondrial sequences Phylogenetic relationships of artiodactyls and cetaceans as deduced from the comparison of cytochrome b and 12S rRNA JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 967) AUTHORS Montgelard,C. TITLE Direct Submission JOURNAL Submitted (11-OCT-1996) C. Montgelard, Laboratoire de Palenontologie, Paleobiologie et Phylogenie - UMR 5554, Institut de Sciences de l'Evolution, Universite Montpellier 2, Place E. Bataillon - Montpellier, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y08811 BASE COUNT 366 a 235 c 166 g 200 t 4246 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cacAGGUU 661 (UGG-)U-CC C|AGCCU-UU CUG-UUAAUU -U-UUAA-UA |GA-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCAUCCCAGU GAGAA---UG C|CCU-Cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--accca -----)---- 1261 ---------- ---------- ---g--auu- a-aAAGGAGC |--------- gGGCAUCA-- 1321 -AGCACACC- -----(auac ac-------- ---------- ---------- ------)--- 1381 --CGU|---A GCUCA--AAA C|GCCCU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAa----C-A 1501 GCA|GUG-AC CAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCCA-U- AU-UAAuca- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -GAC-UCG-- 1981 AACUA-ACAG A-------aa uaCGGC|GUA AAGCGUGUUA -A-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- uuaaaguaca aauaaa--gu -----|UAAA uucuaa-CUA ----AACU(G 2341 UAAAA)AGCC cu-------A ACua-gaauA AAA------- ----auacac -uAc(-AAAA 2401 -)GU|g---- ----acuuua auaa------ -u-------- acugac-cAC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAC 2521 A--GAUA-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- caa(aaac)a g---A-ACUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAUA-CC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AACCCUUGCU ---------- ---------- 2881 (-------aa uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UC-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(acu- 3181 aa-)------ A-AGUAAGCU CAA-CUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacac- 3781 ---------A UAAAGA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-G-CU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g aac--)---- ---------- ---------- AAG-AAuaca 4021 acccaccug- -----aACGA --AAACU-CC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAa-c-) U-AG-G--AA -C--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UCAAGA(- guaga-gu-- --)GCUUGAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaacaa--- 4381 --cac-aaac -------cc- -auaaacaua aua---acua uac-aaaacc aaauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGACAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.H.amphi 5213 bp RNA RNA 01-JUN-1997 DEFINITION Mitochondrion Hippopotamus amphibius.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION Y08810 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Hippopotamus amphibius. ORGANISM Mitochondrion Hippopotamus amphibius. REFERENCE 1 (bases 1 to 968) AUTHORS Montgelard,C., Catzeflis,F.M. and Douzery,E. TITLE deduced from the comparison of cytochrome b and 12S rRNA mitochondrial sequences Phylogenetic relationships of artiodactyls and cetaceans as JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 968) AUTHORS Montgelard,C. TITLE Direct Submission JOURNAL Submitted (11-OCT-1996) C. Montgelard, Laboratoire de Palenontologie, Paleobiologie et Phylogenie - UMR 5554, Institut de Sciences de l'Evolution, Universite Montpellier 2, Place E. Bataillon - Montpellier, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y08810 BASE COUNT 367 a 241 c 166 g 194 t 4245 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cacAGGUU 661 (UGG-)U-CC C|AGCCU-UU CUG-UUAAUU -U-UUAA-UA |GA-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCACCCCAGU GAGAA---CG C|CCU-Cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--accca -----)---- 1261 ---------- ---------- ---g--auc- a-aAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACACC- -----(auac ac-------- ---------- ---------- ------)--- 1381 --CGU|---A GCUCA--AAA C|GCCCU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAa----C-A 1501 GCA|GUG-AC CAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCCA-U- AU-UAAcca- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -GAC-UCA-- 1981 AACUA-ACAG A-------aa uaCGGC|GUA AAGCGUGUUA -A-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--u uaaaaguaca aauaaa--gu -----|UAAA uucuaa-CUA ----AACU(G 2341 UAAAA)AGCC cu-------A ACua-gaauA AAA------- ----aucuac -uAc(-AAAA 2401 -)GU|g---- ----acuuua acaa------ -u-------- acugac-cAC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGA( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAC 2521 A--GAUA-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- caa(aaac)a a---A-ACUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGCG- CUUCAUA-CC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AACCCUUGCU ---------- ---------- 2881 (-------aa uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UC-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(acu- 3181 aa-)------ A-AGUAAGCU CAA-CUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uacac- 3781 ---------A UAAAGA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-G-CU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g aac--)---- ---------- ---------- AAG-AAcaca 4021 acccacccg- -----aACGA --AAACU-CC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAg-c-) U-AG-G--AA -C--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UCAAGA(- guaga-gu-- --)GCUUGAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaua--a- 4381 ---ca-caaa c--------- ccauaaacau aauag---cu agacaaaacc aaauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGACAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.scrof 5213 bp RNA RNA 05-OCT-1998 DEFINITION Mitochondrion Sus scrofa.; complete sequence; mitochondria. ACCESSION AJ0021 9 KEYWORDS complete sequence; mitochondria. SOURCE Mitochondrion Sus scrofa. ORGANISM Mitochondrion Sus scrofa. REFERENCE 1 (bases 1 to 16679) AUTHORS Ursing,B.M. and Arnason,U. TITLE The complete mitochondrial DNA sequence of the pig JOURNAL J. Mol. Evol. 47 (3), 302-306 (1998) STANDARD No information REFERENCE 2 (bases 1 to 16679) AUTHORS Ursing,B.M. TITLE Direct Submission JOURNAL Submitted (29-OCT-1997) Ursing B.M., Lund University, Department of Genetics, Solvegatan 29, S-223 62 Lund, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AJ002189 BASE COUNT 356 a 223 c 167 g 216 t 4251 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cacAGGUU 661 (UGG-)U-CC U|GGCCU-UU CUA-UUAAUU -C-UUAA-UA |AA-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCGGU GAGAA---UG C|CCU-Ccag --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uuaaa -----)---- 1261 ---------- ---------- ---g--auc- a-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACACC- -----(uaua ac-------- ---------- ---------- ------)--- 1381 --GGU|---A GCUCA--UAA C|GCCUU-GC --|------- (-uca--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AU-UAAuua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAG A-------uc caCGGC|GUA AAGAGUGUUU -A-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--a aaaaaaucac aauaga--gu -----|UAAA uuaUAA-CUA ----AGCU(G 2341 UAAAA)AGCC CU-------A GUUA-aaaUA AAA------- -----uaacc -caC(-GAAA 2401 -)GU|g---- ----acucua aua------- -a-------- uccuga-cAC ACGAU-AGCU 2461 A-GGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-CCC 2521 A--AAUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ca(uaac)a a---A-ACUA 2701 U-U|--C|GC C-AGAG-UAC UACUCGC(-- -AACU--)GC CUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-UC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA G-ACCUUACC AACCCUUGCC ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aac- 3181 aa-)------ U-AGUAAGCA CAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----agcac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU UAU------- ---------G 3841 G-G-UU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c au---)---- ---------- ---------- AAG-AAuauc 4021 cacca----- -----cACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-A--AA -C--CAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UCAAGA(- auaga-gu-- --)GCUUGAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagcaugu- 4381 aguaa-uaa- -------aaa uaaccuau-- auu----caa uuacacaacc augcaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAAG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUUA CC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.taj.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Pecari tajacu. ACCESSION No information KEYWORDS No information. SOURCE Pecari tajacu. ORGANISM Pecari tajacu. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X86944 LOCUS TT12SRRNA 948 bp DNA MAM 01-SEP-1995 DEFINITION T.tajacu mitochondrial 12S rRNA gene. ACCESSION X86944 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE collared peccary. ORGANISM Mitochondrion Pecari tajacu Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Sarcopterygii; Mammalia; Eutheria; Artiodactyla; Suiformes; Suina; Tayassuidae; Pecari. REFERENCE 1 (bases 1 to 948) AUTHORS Douzery,E. and Catzeflis,F.M. TITLE Molecular evolution of the mitochondrial 12S rRNA in Ungulata (Mammalia) JOURNAL Unpublished REFERENCE 2 (bases 1 to 948) AUTHORS Douzery,E. TITLE Direct Submission JOURNAL Submitted (03-MAY-1995) to the EMBL/GenBank/DDBJ databases. E. Douzery, Laboratoire de Paleontologie, URA 327 CNRS, Inst.d. Sciences de l'Evolution CC064, Univ.Montpellier 2, Place E. Bataillon, F - 34095 Montpellier, FRANCE COMMENT NCBI gi: 975236 FEATURES Location/Qualifiers source 1..948 /organism="Tayassu tajacu" /mitochondrion /isolate="T1188 Extr. 4717" /tissue_type="blood" rRNA 1..948 /gene="12 rRNA" /product="12S ribosomal RNA" BASE COUNT 356 a 219 c 160 g 213 t ORIGIN BASE COUNT 356 a 219 c 160 g 213 t 4265 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cacAGGUU 661 (UGG-)U-CC U|AGCCU-UU CCA-UUUAUU -U-UUAA-UA |AA-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GAGAA---UG C|CCU-Cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--ucaaa -----)---- 1261 ---------- ---------- ---g--auu- a-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACACC- -----(ccau ---------- ---------- ---------- ------)--- 1381 --GGU|---A GCUCA--CAA C|GCCUU-GC --|------- (-uca--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUa----C-A 1501 GCA|GUG-AU AGAAAUUAAG C-UAUGAAC( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-GUUA-U- AU-UAAaua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -UAA-U---A UCGU-G(-CC AGCCACC-GC -GAU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUAA-AUAG A-------au uaCGGC|GUA AAGAGUGUCU -A-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -aaaccccac aauaga--gc -----|CAAA uuucaa-CUA ----AGCC(G 2341 UAAAA)AGCC AU-------A Gaug-aaaaC AA-------- ----a-uaac -u-C(-GAAA 2401 -)GU|g---- ----acucua auau------ -c-------- ucc-aa-uAC ACGAU-AGCU 2461 A-GGA---CU CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-CCU 2521 A--AAUA-AU |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ac(caac)a a---G-AUUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC CUA--AAACU CAAAGGAC-U 2761 UG|ACGGUG- CUUCACA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUUAACC 2821 C--------- ----)CGAUA A-ACCUCACC AACCCUUGCC ---------- ---------- 2881 (-------ag uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aac- 3181 aa-)------ U-AGUAAGCA CAA-CUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aaucu- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 G-G-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- AAG-AAuauu 4021 ---------- -----uACGA --AAAUU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-G--AA -U--UAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-gu-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 ACAAAG-CAa CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 -aacg-uaac a------ugc aaaaccu--- auua-caaau auaa----cc acacaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA CC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.taj.2 5213 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Pecari tajacu; . ACCESSION U13097 KEYWORDS . SOURCE Mitochondrion Pecari tajacu. ORGANISM Mitochondrion Pecari tajacu. REFERENCE 1 (bases 1 to 373) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE sequences from three mitochondrial genes Phylogeny of all major groups of cetaceans based on DNA JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 373) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U13097 NCBI gi: 595593 BASE COUNT 143 a 79 c 62 g 89 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(---~~~~ -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~~ 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~~~-~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~-~~C- CCUAAA-CCU 2521 A--AAUA-AU |CG|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ac(caac)a a---G-AUUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC CUA--AAACU CAAAGGAC-U 2761 UG|ACGGUG- CUUCAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AACCCUUGCC ---------- ---------- 2881 (-------aa au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aac- 3181 aa-)------ C-AGUAAGCA CAA-CUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aaucu- 3781 ---------G UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 G-A-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- AAG-AA--ua 4021 -cuu------ ------ACGA --AAAUU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-G--AA -U--UAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-gu-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 A~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~-~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.bactr 5213 bp RNA RNA 01-JUN-1997 DEFINITION Mitochondrion Camelus bactrianus.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION Y08808 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Camelus bactrianus. ORGANISM Mitochondrion Camelus bactrianus. REFERENCE 1 (bases 1 to 968) AUTHORS Montgelard,C., Catzeflis,F.M. and Douzery,E. TITLE Phylogenetic relationships of artiodactyls and cetaceans as deduced from the comparison of cytochrome b and 12S rRNA mitochondrial sequences JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 968) AUTHORS Montgelard,C. TITLE Direct Submission JOURNAL Submitted (11-OCT-1996) C. Montgelard, Laboratoire de Palenontologie, Paleobiologie et Phylogenie - UMR 5554, Institut de Sciences de l'Evolution, Universite Montpellier 2, Place E. Bataillon - Montpellier, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y08808 BASE COUNT 335 a 226 c 189 g 218 t 4245 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cacAGGUU 661 (UGA-)U-CC C|AGCCU-UU CUA-UUAGUU -U-UUAA-UA |AA-AU--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUCCCAGU GAGAG---UG C|CCC-Cuag --uu-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-caagua -----)---- 1261 ---------- ---------- ---g--aac- a-aAAGGAGC |--------- aGGCAUCA-- 1321 -AGCACACA- -----(aacc ---------- ---------- ---------- ------)--- 1381 --UGU|---A GCUAA--AGA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACa----C-A 1501 GCA|GUA-AC AAAAAUUGAG U-UAUAAAC( ---------- ----GGAA)G UUUGA-CUA| 1561 A|-GUUA-U- AU-UAUuca- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AGC-CCG-- 1981 AAUUA-AUGG A-------aa ucCGGC|GUA AAGCGUGUUA -A-uga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- gugacuauca aauaga--gu -----|UAAG ucuugg-CCA ----AGAU(G 2341 UAAAA)AUCU AU-------G Acca-acgcA AAA------- ----auaaac -uAC(-GAAA 2401 -)GU|g---- ----acccua auac------ -g-------a ucu-ac-uAC ACGAC-AGCU 2461 A-AGG---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCU 2521 A--GGUG-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- caa(caac)a a---A-AUCA 2701 C-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAUA-CC CC-CUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC AACCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UC-CA|G-CA AAC-|CCC(U --AUA)GGG- -----(auc- 3181 aa-)------ U-AGUAAGCU UAA-CUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ucaaac 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC GAU------- ---------G 3841 G-G-CU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-gu cuu--)---- ---------- ---------- AAG-AAaacu 4021 ucaaaauccu -----uACGA --AAGCC-CC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-GA-G--GG -C--CCAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UCAAGA(- auaga-gu-- --)GCUUGAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaucc-a- 4381 augag-ccc- --------gc aagaaaau-- aua-aauaag ugc--aaaac guauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAAG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUGA GC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.drome 5213 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Camelus dromedarius.; . ACCESSION U13081 KEYWORDS . SOURCE Mitochondrion Camelus dromedarius. ORGANISM Mitochondrion Camelus dromedarius. REFERENCE 1 (bases 1 to 386) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE sequences from three mitochondrial genes Phylogeny of all major groups of cetaceans based on DNA JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 386) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U13081 NCBI gi: 595577 BASE COUNT 134 a 92 c 71 g 89 t 4827 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~-)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~C- CUUAAA-CCU 2521 A--AGUG-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uaa(caac)a a---A-AUCA 2701 C-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAUA-CC CC-CUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC AACCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UC-CA|G-CA AAC-|CCC(U --AUA)GGG- -----(auc- 3181 a--)------ AUAGUAAGCU UAA-CUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ucaaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC GAU------- ---------G 3841 G-G-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-gu ccu--)---- ---------- ---------- AAG-AAaauc 4021 ucaaaauacu -----uACGA --AAGCC-CC C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-GA-G--GG -C--CCAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UCAAGA(- acaga-gu-- --)GCUUGGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUA--GGCC 4261 A~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.L.guani 5213 bp RNA RNA 01-JUN-1997 DEFINITION Mitochondrion Lama guanicoe.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION Y08809 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Lama guanicoe. ORGANISM Mitochondrion Lama guanicoe. REFERENCE 1 (bases 1 to 966) AUTHORS Montgelard,C., Catzeflis,F.M. and Douzery,E. TITLE mitochondrial sequences Phylogenetic relationships of artiodactyls and cetaceans as deduced from the comparison of cytochrome b and 12S rRNA JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 966) AUTHORS Montgelard,C. TITLE Direct Submission JOURNAL Submitted (11-OCT-1996) C. Montgelard, Laboratoire de Palenontologie, Paleobiologie et Phylogenie - UMR 5554, Institut de Sciences de l'Evolution, Universite Montpellier 2, Place E. Bataillon - Montpellier, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y08809 BASE COUNT 336 a 229 c 186 g 215 t 4247 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cacAGGUU 661 (UGA-)U-CC C|AGCCU-UU CUA-UUAGUU -U-CUGA-UA |AA-UU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUCCCAGU GAGAA---UG C|CCC-Cuaa --gu-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-cuaguu -----)---- 1261 ---------- ---------- ---g--aac- a-gAAGGAGC |--------- gGGCAUCA-- 1321 -AGCACACA- -----(accc ---------- ---------- ---------- ------)--- 1381 --UGU|---A GCUAA--CGA C|GCCUU-GC --|------- (-uug--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUa----C-A 1501 GCA|GUG-AC AAAAAUUAAG U-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AU-UACuuaa ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AAUUA-AUAG A-------aa ccCGGC|GUA AAGCGUGUUA -A-cga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- gagacuagua aauaga--gu -----|UAAG cccugg-CCA ----AGAU(G 2341 UAAAA)AGCu au-------G GCca-gcguA AAA------- ----auaaac -uAc(-GAAA 2401 -)GU|g---- ----acccua augc------ -a-------- auccac-uAC ACGAC-AGCU 2461 A-AGA---CU CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-UUU 2521 A--AGUG-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- caa(uaac)a a---A-AUCG 2701 C-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAUA-CC CC-CUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAUACC 2821 C--------- ----)CGAUC A-ACCUUACC UGCCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UC-CA|G-CA AAC-|CCC(U --AU-)AGG- -----(aac- 3181 aa-)------ A-AGUAAGCU CAA-CUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuaaac 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC AAU------- ---------G 3841 G-G-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au ccc--)---- ---------- ---------- AAG-AAaauc 4021 ucaaaacccu -----uACGA --AAGCC-CC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--c-) U-AA-G--GG -C--CAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-gu-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaguauaa- 4381 --cag--acc ---------c guaagcaa-a cauaa-cagu guca---aau auacgg---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAAG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (19)-Carni 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (20)-Fissi 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (21)-Canid 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.C.fam.1 5213 bp RNA RNA 05-MAR-1997 DEFINITION Mitochondrion Canis familiaris.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION Y08507 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Canis familiaris. ORGANISM Mitochondrion Canis familiaris. REFERENCE 1 (bases 1 to 954) AUTHORS Ledje,C. TITLE Direct Submission JOURNAL Molecular Syst., Ints. of Genetics, Univ. of Lund, Solvegatan 29, S-223 62 Lund, SWEDEN Submitted (30-SEP-1996) C. Ledje, Division of Evolutionary STANDARD No information REFERENCE 2 (bases 1 to 954) AUTHORS Ledje,C. and Arnason,U. TITLE Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene JOURNAL J. Mol. Evol. 43 (6), 641-649 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y08507 BASE COUNT 346 a 210 c 166 g 232 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|AGCCU-UC CUA-UUAGUU -U-UUAG-UA |GA-CU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCGCCCCAGU GAGAA---UG C|CCU-Uaaa --au-ca--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----cca -----)---- 1261 ---------- ---------- -gug--auc- u-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACAC-- -----(ucuu aa-------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UAA C|ACCUU-GC --|------- (--uaa-)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCCA-U- AC-UAAA-uA ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUAG G-------CC UACGGC|GUA AAGCGUGUUC -A-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -auuuuuac- acuaaa--gu -----|UAAA ACUUAA-CUA ----AGCC(G 2341 UAAAA)AGCU AC-------A GUUA-UCAUA AAA------- -----uaaac -cAC(-GAAA 2401 -)GU|g---- ----acuuua uaauaa---- ---------- ucu-GACUAC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 A--GAUA-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uua(caac)a a---a-auaa 2701 u-U|--C|GC C-AGAG-GAC UACUAGC(-- -AAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACCUUUCGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(C --AAA)AGG- -----(uag- 3181 aa-)------ C-AGUAAGCA CAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---uuu-ac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACU UAU------- ---------G 3841 A-G-GU-GG- ga-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-cc c----)---- ---------- ---------- AAG-AAcauu 4021 uc-------- ------ACGA --AUGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAU---) U-AA-A--AA -C--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-gaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 --aua-agac --acaaccau aaccauauua acuuaacuaa aa-------- -cacaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CC(GGA 4621 -A)GGU-GU- GCUUGGAUUA au-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.fam.2 5213 bp RNA RNA 14-JAN-1999 DEFINITION Mitochondrion Canis familiaris.; . ACCESSION U96639 KEYWORDS . SOURCE Mitochondrion Canis familiaris. ORGANISM Mitochondrion Canis familiaris. REFERENCE 1 (bases 1 to 16728) AUTHORS Kim,K.S., Lee,S.E., Jeong,H.W. and Ha,J.H. TITLE familiaris) mitochondrial genome The complete nucleotide sequence of the domestic dog (Canis JOURNAL Mol. Phylogenet. Evol. 10 (2), 210-220 (1998) STANDARD No information REFERENCE 2 (bases 1 to 16728) AUTHORS Kim,K.S., Lee,S.E., Jeong,H.W., Jeong,S.Y., Sohn,H.S. and Ha,J.H. TITLE Direct Submission JOURNAL Submitted (07-APR-1997) Genetic Engineering, Animal Genetics, 1370 Sankyuk-dong, Pukgu, Taegu 702-701, Korea STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U96639 BASE COUNT 346 a 211 c 166 g 231 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|AGCCU-UC CUA-UUAGUU -U-UUAG-UA |GA-CU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCGCCCCAGU GAGAA---UG C|CCU-Uaaa --au-ca--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----cca -----)---- 1261 ---------- ---------- -gug--auc- u-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACAC-- -----(ucuu aa-------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UAA C|ACCUU-GC --|------- (--uaa-)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCCA-U- AC-UAAA-uA ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUAG G-------CC UACGGC|GUA AAGCGUGUUC -A-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -acuuuuac- acuaaa--gu -----|UAAA ACUUAA-CUA ----AGCC(G 2341 UAAAA)AGCU AC-------A GUUA-UCAUA AAA------- -----uaaac -cAC(-GAAA 2401 -)GU|g---- ----acuuua uaauaa---- ---------- ucu-GACUAC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 A--GAUA-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uua(caac)a a---a-auaa 2701 u-U|--C|GC C-AGAG-GAC UACUAGC(-- -AAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACCUUUCGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(C --AAA)AGG- -----(uag- 3181 aa-)------ C-AGUAAGCA CAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---uuu-ac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACU UAU------- ---------G 3841 A-G-GU-GG- ga-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-cc c----)---- ---------- ---------- AAG-AAcauu 4021 uc-------- ------ACGA --AUGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAU---) U-AA-A--AA -C--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-gaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 --aua-agac --acaaccau aaccauauua acuuaacuaa aa-------- -cacaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CC(GGA 4621 -A)GGU-GU- GCUUGGAUUA au-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.V.vulpe 5213 bp RNA RNA 05-MAR-1997 DEFINITION Mitochondrion Vulpes vulpes.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION Y08508 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Vulpes vulpes. ORGANISM Mitochondrion Vulpes vulpes. REFERENCE 1 (bases 1 to 957) AUTHORS Ledje,C. TITLE Direct Submission JOURNAL 29, S-223 62 Lund, SWEDEN Submitted (30-SEP-1996) C. Ledje, Division of Evolutionary Molecular Syst., Ints. of Genetics, Univ. of Lund, Solvegatan STANDARD No information REFERENCE 2 (bases 1 to 957) AUTHORS Ledje,C. and Arnason,U. TITLE Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene JOURNAL J. Mol. Evol. 43 (6), 641-649 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y08508 BASE COUNT 341 a 212 c 178 g 226 t 4256 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UC CUA-UUAGUC -C-UUAG-UA |AA-CU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCGCCCCAGU GAGAA---UG C|CCU-Uaaa --au-cg--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----cua -----)---- 1261 ---------- ---------- -acg--auc- u-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACAC-- -----(uccu aa-------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UAA C|ACCUU-GC --|------- (--uaa-)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-GUUA-U- AC-UAAA-gA ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AACUA-AUAG G-------CC CACGGC|GUA AAGCGUGUUU -A-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -aacauau-u acuaaa--gu -----|UAAA ACUUAA-CUA ----AGCC(G 2341 UAAAA)AGCU AC-------A GUUA-CCAUA AAA------- -----uauac -uAC(-GAAA 2401 -)GU|g---- ----acuuua aaauuu---- ---------- ucu-GAUUAC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 A--AAUA-GU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- cua(uaac)a a---a-acaa 2701 u-U|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AUCCCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(uag- 3181 ag-)------ C-AGUAAGCA GGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---c-acgc- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACU UAU------- ---------G 3841 G-G-AU-GG- ga-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu uu---)---- ---------- ---------- AAG-AAcacu 4021 uu-------- ------ACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) U-AG-A--AA -C--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-gaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 --aua-agac u-gaggccau aaacauauua acucacauca aaa------- -cacga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CC(GGA 4621 -A)GGU-GU- GCUUGGAUUA ac-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (21)-Felid 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.F.cat.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Felis catus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Felis catus. ORGANISM Mitochondrion Felis catus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U20753 LOCUS FCU20753 17009 bp DNA circular MAM 02-DEC-1995 DEFINITION Felis catus mitochondrion, complete genome. ACCESSION U20753 KEYWORDS . SOURCE cat. ORGANISM Mitochondrion Felis catus Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Carnivora; Fissipedia; Felidae; Felis. REFERENCE 1 (bases 1 to 17009) AUTHORS Lopez,J.V., Culver,M., Cevario,S. and O'Brien,S.J. TITLE Complete nucleotide sequences of the domestic cat (Felis catus) mitochondrial genome and a nuclear mtDNA tandem repeat (Numt): Analysis of heterogeneous evolutionary rates JOURNAL Unpublished REFERENCE 2 (bases 1 to 17009) AUTHORS Lopez,J.V. TITLE Direct Submission JOURNAL Submitted (07-FEB-1995) Jose V. Lopez, Laboratory of Viral Carcinogenesis, PRI/DynCorp, Biological Carcinogenesis and Development Prog, Bldg 560, Room 11-21, NCI-Frederick Cancer Research and Development Center, Frederick, MD 21702-1201, USA COMMENT NCBI gi: 1098523 FEATURES Location/Qualifiers source 1..17009 /clone="pCmt.12, pCmt4.8" /organism="Felis catus" /mitochondrion /isolate="FCA-65" /sex="female" /cell_type="lymphocyte" /tissue_type="blood" /dev_stage="adult" tRNA 866..935 /product="tRNA-Phe" rRNA 936..1895 /product="12S rRNA" tRNA 1896..1963 /product="tRNA-Val" rRNA 1964..3537 /product="16S rRNA" tRNA 3538..3612 /product="tRNA-Leu (UUR)" CDS 3615..4571 /gene="ND1" /note="NCBI gi: 1098524" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 1" /translation="MFMINVLSLIIPILLAVAFLTLVERKVLGYMQLRKGPNVVGPYG LLQPIADAVKLFTKEPLRPLTSSMLMFIMAPILALTLALTMWIPLPMPYPLINMNLGV LFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF TLAMLITTQEYMWLIIPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFDVEYAAG PFALFFLAEYANIIMMNILTTILFFGAFHSPYMPELYTINFTVKTLLLTTTFLWIRAS YPRFRYDQLMHLLWKNFLPLTLALCMWHVSLPIITASIPPQT" tRNA 4571..4639 /product="tRNA-Ile" tRNA complement(4637..4710) /product="tRNA-Gln" tRNA 4712..4780 /product="tRNA-Met" CDS 4781..>5822 /gene="ND2" /note="incomplete termination codon=TAA after polyadenylation; NCBI gi: 1098525" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 2" /translation="MNPPIFIIIMLTVISGTMIVVTTSHWLLVWIGFEMNLLAIIPIL MKKYNPRAMEAATKYFLTQAAASMILMMWIIINLLHSGQWTVLKDLNPMASIMMTTAL AMKLGLAPFHFWVPEVTQGISMSSGLILLTWQKIAPLSILYQISSTINPNLILTMSIL SVMIGGWGGLNQTQLRKIMAYSSIAHMGWMTAIMMYSPTMMILNLTIYIIMTLTTFML FMHNSTTTTASLSQTWNKTPLITSLILVLMMSLGGLPPLSGFIPKWMIIQELTKNELI MMPTLLAMTALLNLYFYMRLTYTTALTMFPSNNSMKMKWRFECTKKMTFLPPLVVMST MLLPLAPMLSILD" tRNA 5823..5890 /product="tRNA-Trp" tRNA complement(5907..5975) /product="tRNA-Ala" tRNA complement(5977..6049) /product="tRNA-Asn" rep_origin 6050..6081 /note="origin of L-strand replication; OLR" tRNA complement(6082..6147) /product="tRNA-Cys" tRNA complement(6148..6214) /product="tRNA-Tyr" CDS 6216..7760 /gene="COI" /note="NCBI gi: 1098526" /codon_start=1 /transl_table=2 /product="cytochrome c oxidase subunit I" /translation="MFMNRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQP GTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSF WLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILG AINFITTIINMKPPAMSQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTT FFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWA MMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKW SPAMLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGG FVHWFPLFSGYTLDNTWAKIHFTIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTTW NTISSMGSFISLTAVMLMVFMVWEAFASKREVAMVELTTTNLEWLHGCPPPYHTFEEP TYVLLK" tRNA complement(7759..7828) /product="tRNA-Ser (UCN)" tRNA 7833..7901 /product="tRNA-Asp" CDS 7902..8585 /gene="COII" /note="NCBI gi: 1098527" /codon_start=1 /transl_table=2 /product="cytochrome c oxidase subunit II" /translation="MAYPFQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISL MLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGH QWYWSYEYTDYEDLNFDSYMIPTQELKPGELRLLEVDNRVVLPMEMTIRMLISSEDVL HSWAVPSLGLKTDAIPGRLNQTTLMATRPGLYYGQCSEICGSNHSFMPIVLELVPLTY FEKWSASML" tRNA 8589..8656 /product="tRNA-Lys" CDS 8658..8861 /note="NCBI gi: 1098528" /codon_start=1 /transl_table=2 /product="ATPase 8" /translation="MPQLDTSTWSITIMSMIMTLFIVFQLKISKYLYPSNPEPKSMTT LKQRNPWEKKWTKIYSPLSLPQQ" CDS 8819..9499 /note="NCBI gi: 1098529" /codon_start=1 /transl_table=2 /product="ATPase 6" /translation="MNENLFASFTTPTMMGLPIVILIIMFPSILFPSPNRLINNRLVS LQQWLVQLTSKQMLAIHNHKGQTWALMLMSLILFIGSTNLLGLLPHSFTPTTQLSMNL GMAIPLWAGTVITGFRHKTKASLAHFLPQGTPVPLIPMLVVIETISLFIQPMALAVRL TANITAGHLLMHLIGGAALALMNISTSIALITFTILILLTILEFAVALIQAYVFTLLV SLYLHDNT" CDS 9499..>10282 /gene="COIII" /note="incomplete termination codon=TAA after polyadenylation; NCBI gi: 1098530" /codon_start=1 /transl_table=2 /product="cytochrome c oxidase subunit III" /translation="MTHQTHAYHMVNPSPWPLTGALSALLMTSGLAMWFHYNLTLLLT LGMTTNLLTMYQWWRDIIRESTFQGHHTPIVQKGLRYGMILFIISEVFFFAGFFWAFY HSSLAPTPELGGCWPPTGIIPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGNRKHML QALFITISLGVYFTLLQASEYYETSFTISDGVYGSTFFMATGFHGLHVIIGSTFLIVC FLRQLKYHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS" tRNA 10283..10351 /product="tRNA-Gly" CDS 10352..>10698 /gene="ND3" /note="incomplete termination codon=TAA after polyadenylation; NCBI gi: 1098531" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 3" /translation="MNVMLALLTNTLLSTLLVLIAFWLPQLNIYAEKASPYECGFDPM GSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTDKLPTMLTMALLLISLLAASL AYEWTQKGLEWTE" tRNA 10699..10767 /product="tRNA-Arg" CDS 10768..11064 /gene="ND4L" /note="NCBI gi: 1098532" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 4L" /translation="MSMVYINIFLAFIMSLMGLLMYRSHLMSSLLCLEGMMLSLFIMM AVAILNNHLTLASMTPIILLVFAACEAALGLSLLVMVSNTYGTDYVQNLNLLQC" CDS 11058..>12435 /gene="ND4" /note="incomplete termination codon=TAA after polyadenylation; NCBI gi: 1098533" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 4" /translation="MLKIIIPTAMLMPMTCLSKPNMIWINSTTYSLLISLISLSYLNQ LGGHSLNFSLLFFSDSLSAPLLVLTTWLLPLMLMASQSHLSKETPSRKKLYITMLTLL QLLLIMTFTATELIMFYILFEATLIPTLIIITRWGDQTERLNAGLYFLFYTLVGSLPL LVALLYIQNTTGTLNFLIIQYWAKPISTTWSNIFLWLACMMAFMVKMPLYGLHLWLPK AHVEAPIAGSMVLAAVLLKLGGYGMMRITVLLNPATNQMAYPFMMLSLWGMVMTSSIC LRQTDLKSLIAYSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSMLFCLANSNY ERVHSRTMILARGLQTILPLMAAWWLLASLANLALPPTINLIGELFVVMASFSWSNMT IILMGTNIIITALYSLYMLIMTQRGKYTHHIKNINPSFTRENALMALHLLPLLLLSLN PKIVLGPIY" tRNA 12436..12504 /product="tRNA-His" tRNA 12505..12563 /product="tRNA-Ser (AGY)" tRNA 12564..12633 /product="tRNA-Leu (CUN)" CDS 12634..14454 /gene="ND5" /note="NCBI gi: 1098534" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 5" /translation="MNLFTPLMLTAMFILLLPIIMSNTQLYKNSLYPHYVKTTISYAF IISMIPTMMFISSGQEAIISNWHWLSIQTLKLSLSFKMDYFSTIFIPVALFVTWSIME FSMWYMHSDPYINRFFKYLLMFLITMMILVTANNLFQLFIGWEGVGIMSFLLIGWWYG RADANTAALQAILYNRIGDVGFIMAMAWFLTNSNAWDFQQIFITQHENLNIPLLGLLL AATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRFYPLMEQNKTMQTL TLCLGAITTLFTAICALTQNDIKKVVAFSTSSQLGLMIVTIGINQPYLAFLHICTHAF FKAMLFMCSGSIIHSLNDEQDIRKMGGLYKPMPFTTTSLIIGSLALTGMPFLTGFYSK DLIIETANTSYTNAWALLITLIATSLTAAYSTRIMFFVLLGQPRFNTLNLINENNTHL INSIKRLLIGSIFAGYLISYNIPPTTIPQMTMPYYLKLTALAVTIAGFILALELNLAA KNLKFMYPSNLFKFSNLLGYFPIVMHRLPSKMSLTMSQKSASMLLDMIWLENVLPKSI SLFQMKMSTTVSNQKGLVKLYFLSFMITLALSLILLNSHE" CDS complement(14438..14965) /gene="ND6" /note="NCBI gi: 1098535" /codon_start=1 /transl_table=2 /product="NADH dehydrogenase subunit 6" /translation="MMTYIVFILSTVFVVSFVSFSSKPSPIYGGFGLIVAGGTGCGIV LNFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEPYPEAWTSNKAVLAMFITGVLAELL TACYILKEDEVEVVFKFNGAGDWVIYDTGDSGFFSEEAMGIAALYSYGTWLVVVTGWS LLIGVLVIMEVTRGN" tRNA complement(14966..15034) /product="tRNA-Glu" CDS 15038..16177 /gene="cytB" /note="NCBI gi: 1098536" /codon_start=1 /transl_table=2 /product="cytochrome b" /translation="MTNIRKSHPLIKIINHSFIDLPAPSNISAWWNFGSLLGVCLTLQ ILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLYMHVGRGM YYGSYTFSETWNIGIMLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTEL VEWIWGGFSVDKATLTRFFGFHFILPFIISALAGVHLLFLHETGSNNPSGITSDSDKI PFHPYYTIKDILGLLVLVLTLMLLVLFSPDLLGDPDNYIPANPLNTPPHIKPEWYFLF AYAILRSIPNKLGGVLALVLSILVLAIIPILHTSKQRGMMFRPLSQCLFWLLVADLLT LTWIGGQPVEHPFITIGQLASILYFSTLLILMPISGIIENRLLKW" tRNA 16178..16247 /product="tRNA-Thr" tRNA complement(16248..16314) /product="tRNA-Pro" misc_feature join(16315..17009,1..865) /note="control region; CR" BASE COUNT 5543 a 4454 c 2406 g 4606 t ORIGIN BASE COUNT 347 a 227 c 172 g 214 t 4253 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UU CCA-UUAGUU -A-UUAA-UA |AG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUCCCGGU GAAAA---UG C|CCU-Cuaa --gu-cac-- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----cca -----)---- 1261 ---------- ---------- -gug--acc- u-aAAGGAGC |--------- uGGUAUCA-- 1321 -AGCACAC-- -----(aacc aca------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UAA C|ACCUU-GC --|------- (--uca-)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-CAUGAAU( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-GCUA-U- AU-UAAACAA ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUAG A-------CC CACGGC|GUA AAGCGUGUUA -C-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------ga -aaaaaauau acuaaa--gu -----|UAAA UUUUAA-CUA ----GGCC(G 2341 UAGAA)AGCU AC-------A GUUA-ACAUA AAA------- ----auacag -cAC(-GAAA 2401 -)GU|a---- ----acuuua acacc----- ---------- ucc-GACUAC ACGAC-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCUA-CUAU| -GCUU-AGC- CCUAAA-CUU 2521 A--GAUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------c ccu(aaac)a a---A-ACUA 2701 U-C|--C|GC C-AGAG-AAC UACUAGC(-- -AAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUCACC AUCUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aag- 3181 aa-)------ A-AGUAAGCA CAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuuaac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|GCU CAU------- ---------G 3841 A-G-AU-GG- ga-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa au---)---- ---------- ---------- UAG-AAcacc 4021 c--------- ------ACGA --AGAuC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- CGAAAc---) U-AA-G--UA -U--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA AUUUGAGA(- auaga-ga-- --)GCUCAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UCG--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagug---- 4381 --gua-acu- --cccaaaaa aaccuauuua aauuaucaca cc-------- -cacaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.F.cat.2 5213 bp RNA RNA 05-MAR-1997 DEFINITION Mitochondrion Felis catus.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION Y08503 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Felis catus. ORGANISM Mitochondrion Felis catus. REFERENCE 1 (bases 1 to 959) AUTHORS Ledje,C. TITLE Direct Submission JOURNAL Molecular Syst., Ints. of Genetics, Univ. of Lund, Solvegatan 29, S-223 62 Lund, SWEDEN Submitted (30-SEP-1996) C. Ledje, Division of Evolutionary STANDARD No information REFERENCE 2 (bases 1 to 959) AUTHORS Ledje,C. and Arnason,U. TITLE Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene JOURNAL J. Mol. Evol. 43 (6), 641-649 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y08503 BASE COUNT 346 a 228 c 172 g 213 t 4254 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UU CCA-UUAGUU -A-UUAA-UA |AG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUCCCGGU GAAAA---UG C|CCU-Cuaa --gu-cac-- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----cca -----)---- 1261 ---------- ---------- -gug--acc- u-aAAGGAGC |--------- uGGUAUCA-- 1321 -AGCACAC-- -----(aacc aca------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UAA C|ACCUU-GC --|------- (--uca-)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-CAUGAAU( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-GCUA-U- AU-UAAACAA ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUAG A-------CC CACGGC|GUA AAGCGUGUUA -C-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------ga -aaaaa-uau acuaaa--gu -----|UAAA UUUUAA-CUA ----GGCC(G 2341 UAGAA)AGCU AC-------A GUUA-ACAUA AAA------- ----auacag -cAC(-GAAA 2401 -)GU|a---- ----acuuua acacc----- ---------- ucc-GACUAC ACGAC-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CUU 2521 A--GAUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------c ccu(aaac)a a---A-ACUA 2701 U-C|--C|GC C-AGAG-AAC UACUAGC(-- -AAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUCACC AUCUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aag- 3181 aa-)------ A-AGUAAGCA CAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuuaac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|GCU CAU------- ---------G 3841 A-G-AU-GG- ga-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa au---)---- ---------- ---------- UAG-AAcacc 4021 c--------- ------ACGA --AGAuC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- CGAAAc---) U-AA-G--UA -U--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA AUUUGAGA(- auaga-ga-- --)GCUCAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UCG--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagug---- 4381 --gua-acu- --cccaaaaa aaccuauuua aauuaucaca cc-------- -cacaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.F.cat.3 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Felis catus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Felis catus. ORGANISM Mitochondrion Felis catus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: D28892 LOCUS CATMT12RE 373 bp ds-DNA MAM 22-NOV-1994 DEFINITION Felis catus mitochondrial gene for 12S rRNA, partial sequence. ACCESSION D28892 KEYWORDS 12S rRNA; 12S ribosomal RNA. SOURCE Mitochondrion Felis catus (organelle Mitochonrion Felis catus) DNA. ORGANISM Mitochondrion Felis catus Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Carnivora; Feliforma; Felidae. REFERENCE 1 (bases 1 to 373) AUTHORS Masuda,R., Yoshida,M.C., Shinyashiki,F. and Bando,G. TITLE Molecular phylogenetic status of the Iriomote cat Felis iriomotensis, inferred from mitochondrial DNA sequence analysis JOURNAL Zoological Science 11, 597-604 (1994) STANDARD full automatic COMMENT Submitted (10-Mar-1994) to DDBJ by: Ryuichi Masuda Chromosome Research Unit Faculty of Science Hokkaido University North 10, West 8, Kita-ku Sapporo, Hokkaido 060 Japan Phone: 011-706-3541 Fax: 011-736-6304. NCBI gi: 571524 FEATURES Location/Qualifiers source 1..373 /organism="Mitochondrion Felis catus" /mitochondrion /sequenced_mol="DNA" rRNA <1..>373 /product="12S rRNA" BASE COUNT 137 a 79 c 65 g 92 t ORIGIN BASE COUNT 137 a 79 c 65 g 92 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(----~~~ -----)---- 1261 ---------- ---------- ---~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCUU-AGC- CCUAAA-CUU 2521 A--GAUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------u ccu(aaac)a a---A-ACUA 2701 U-C|--C|GC C-AGAG-AAC UACUAGC(-- -AAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUCACC AUCUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aag- 3181 aa-)------ A-AGUAAGCA CAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuuaac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|GCU CAU------- ---------G 3841 A-G-AU-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa au---)---- ---------- ---------- UAG-AAcacc 4021 c--------- ------ACGA --AGAUC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- CGAAAc---) U-AA-G--CA -U--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA AUUUGAGA(- auaga-ga-- --)GCUCAAU U-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.F.cat.4 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Felis catus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Felis catus. ORGANISM Mitochondrion Felis catus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: D28893 LOCUS CATMT12RF 373 bp ds-DNA MAM 22-NOV-1994 DEFINITION Felis catus mitochondrial gene for 12S rRNA, partial sequence. ACCESSION D28893 KEYWORDS 12S rRNA; 12S ribosomal RNA. SOURCE Mitochondrion Felis catus (organelle Mitochonrion Felis catus) DNA. ORGANISM Mitochondrion Felis catus Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Carnivora; Feliforma; Felidae. REFERENCE 1 (bases 1 to 373) AUTHORS Masuda,R., Yoshida,M.C., Shinyashiki,F. and Bando,G. TITLE Molecular phylogenetic status of the Iriomote cat Felis iriomotensis, inferred from mitochondrial DNA sequence analysis JOURNAL Zoological Science 11, 597-604 (1994) STANDARD full automatic COMMENT Submitted (10-Mar-1994) to DDBJ by: Ryuichi Masuda Chromosome Research Unit Faculty of Science Hokkaido University North 10, West 8, Kita-ku Sapporo, Hokkaido 060 Japan Phone: 011-706-3541 Fax: 011-736-6304. NCBI gi: 571525 FEATURES Location/Qualifiers source 1..373 /organism="Mitochondrion Felis catus" /mitochondrion /sequenced_mol="DNA" rRNA <1..>373 /product="12S rRNA" BASE COUNT 137 a 79 c 65 g 92 t ORIGIN BASE COUNT 137 a 79 c 65 g 92 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(----~~~ -----)---- 1261 ---------- ---------- ---~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCUU-AGC- CCUAAA-CUU 2521 A--GAUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------c ccu(aaac)a a---A-ACUA 2701 U-C|--C|GC C-AGAG-AAC UACUAGC(-- -AAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUCACC AUCUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aag- 3181 aa-)------ A-AGUAAGCA CAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuuaac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|GCU CAU------- ---------G 3841 A-G-AU-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa au---)---- ---------- ---------- UAG-AAcacc 4021 c--------- ------ACGA --AGAUC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- CGAAAc---) U-AA-G--UA -U--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA AUUUGAGA(- auaga-ga-- --)GCUCAAU U-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.F.conco 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Felis concolor. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Felis concolor. ORGANISM Mitochondrion Felis concolor. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U33495 LOCUS FCU33495 960 bp DNA MAM 16-NOV-1995 DEFINITION Felis concolor 12S rRNA gene, mitochondrial gene encoding mitochondrial rRNA, complete sequence. ACCESSION U33495 KEYWORDS . SOURCE puma. ORGANISM Mitochondrion Felis concolor Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Osteichthyes; Sarcopterygii; Mammalia; Eutheria; Carnivora; Fissipedia; Felidae; Felis. REFERENCE 1 (bases 1 to 960) AUTHORS Springer,M.S., Hollar,L.J. and Burk,A. TITLE Compensatory substitutions and the evolution of the mitochondrial 12S rRNA gene in mammals JOURNAL Mol. Biol. Evol. 12 (1995) In press REFERENCE 2 (bases 1 to 960) AUTHORS Burk,A. TITLE Direct Submission JOURNAL Submitted (09-AUG-1995) Angela Burk, University of California, Biology, Riverside, CA 92521, USA COMMENT NCBI gi: 1065402 FEATURES Location/Qualifiers source 1..960 /mitochondrion /organism="Felis concolor" rRNA 1..960 /product="12S rRNA" BASE COUNT 347 a 232 c 173 g 208 t ORIGIN BASE COUNT 347 a 232 c 173 g 208 t 4253 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UU CCA-UUAGUU -A-UUAA-UA |AG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUCCCGGU GAAAA---UG C|CCU-Ucaa --gu-cac-- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----cca -----)---- 1261 ---------- ---------- -gug--acc- u-aAAGGAGC |--------- uGGUAUCA-- 1321 -AGCACAC-- -----(aacc aua------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UGA C|ACCUU-GC --|------- (--uca-)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-UAUGAAU( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-GCUA-U- GU-UAAACAA ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AACUA-AUAG A-------CC UACGGC|GUA AAGCGUGUUA -C-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -gaaaaauau acuaaa--gu -----|UAAA CCUUAA-CUA ----GGCC(G 2341 UAAAA)AGCU AC-------A GUUA-ACAUG AAA------- ----auacag -cAC(-GAAA 2401 -)GU|a---- ----acuuua acauc----- ---------- ucc-AACUAC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 A--GAUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a cuu(aaac)a a---A-ACUA 2701 U-C|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC AUCUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CCA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aag- 3181 aa-)------ A-AGUAAGCA CAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuuaac- 3781 ---------A CAAAAA-AGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-AU-GG- ga-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ga ac---)---- ---------- ---------- UAG-AAcacc 4021 c--------- ------ACGA --AAAUC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-G--UA -U--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA AUUCGAGA(- auaga-ga-- --)GCUCAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UCG--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagug---- 4381 --aca-aua- --uccaaaaa aaccuauuua aaccaccaca cc-------- -cacaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA CA-------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.L.parda 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Leopardus pardalis. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Leopardus pardalis. ORGANISM Mitochondrion Leopardus pardalis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: D28894 LOCUS CATMT12RG 373 bp ds-DNA MAM 22-NOV-1994 DEFINITION Felis pardalis mitochondrial gene for 12S rRNA, partial sequence. ACCESSION D28894 KEYWORDS 12S rRNA; 12S ribosomal RNA. SOURCE Mitochondrion Felis pardalis (organelle Mitochondrion Felis pardalis) DNA. ORGANISM Mitochondrion Felis pardalis Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Carnivora; Feliforma; Felidae. REFERENCE 1 (bases 1 to 373) AUTHORS Masuda,R., Yoshida,M.C., Shinyashiki,F. and Bando,G. TITLE Molecular phylogenetic status of the Iriomote cat Felis iriomotensis, inferred from mitochondrial DNA sequence analysis JOURNAL Zoological Science 11, 597-604 (1994) STANDARD full automatic COMMENT Submitted (10-Mar-1994) to DDBJ by: Ryuichi Masuda Chromosome Research Unit Faculty of Science Hokkaido University North 10, West 8, Kita-ku Sapporo, Hokkaido 060 Japan Phone: 011-706-3541 Fax: 011-736-6304. NCBI gi: 571526 FEATURES Location/Qualifiers source 1..373 /organism="Mitochondrion Felis pardalis" /mitochondrion /sequenced_mol="DNA" rRNA <1..>373 /product="12S rRNA" BASE COUNT 137 a 87 c 65 g 84 t ORIGIN BASE COUNT 137 a 87 c 65 g 84 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(----~~~ -----)---- 1261 ---------- ---------- ---~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCUU-AGC- CCUAAA-CCC 2521 A--GAUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a ucc(aaac)a a---A-ACUA 2701 U-C|--C|GC C-AGAG-AAC UACCAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC AUCUCUUGCU ---------- ---------- 2881 (-------aa uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aag- 3181 aa-)------ A-AGUAAGCA CAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuuaac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-AU-GG- GA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ca ac---)---- ---------- ---------- UAG-AAcacc 4021 c--------- ------ACGA --AAAUC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-G--UA -U--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA AUCUGAGA(- auaga-ga-- --)GCUCAAU U-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.L.lynx 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Lynx lynx. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Lynx lynx. ORGANISM Mitochondrion Lynx lynx. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: D28891 LOCUS CATMT12RD 373 bp ds-DNA UNA 22-NOV-1994 DEFINITION Felis lynx mitochondrial gene for 12S rRNA, partial sequence. ACCESSION D28891 KEYWORDS 12S rRNA; 12S ribosomal RNA. SOURCE Mitochondrion Felis lynx (organelle Mitochondrion Felis lynx) DNA. ORGANISM Mitochondrion Felis lynx Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Carnivora; Feliforma; Felidae. REFERENCE 1 (bases 1 to 373) AUTHORS Masuda,R., Yoshida,M.C., Shinyashiki,F. and Bando,G. TITLE Molecular phylogenetic status of the Iriomote cat Felis iriomotensis, inferred from mitochondrial DNA sequence analysis JOURNAL Zoological Science 11, 597-604 (1994) STANDARD full automatic COMMENT Submitted (10-Mar-1994) to DDBJ by: Ryuichi Masuda Chromosome Research Unit Faculty of Science Hokkaido University North 10, West 8, Kita-ku Sapporo, Hokkaido 060 Japan Phone: 011-706-3541 Fax: 011-736-6304. NCBI gi: 571523 FEATURES Location/Qualifiers source 1..373 /organism="Mitochondrion Felis lynx" /mitochondrion /sequenced_mol="DNA" rRNA <1..>373 /product="12S rRNA" BASE COUNT 139 a 80 c 63 g 91 t ORIGIN BASE COUNT 139 a 80 c 63 g 91 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(----~~~ -----)---- 1261 ---------- ---------- ---~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCUU-AGC- CCUAAA-CCU 2521 A--GAUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a ccu(aaac)a a---A-AUUA 2701 U-C|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC AUCUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aau- 3181 aa-)------ A-AGUAAGCA CAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuuaac- 3781 ---------A CAAAAA-AGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-AU-GG- GA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa ac---)---- ---------- ---------- UAG-AAcauc 4021 c--------- ------ACGA --AAAUC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-G--UA -U--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA AUUUGAGA(- auaga-ga-- --)GCUCAAU U-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.ben.2 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Prionailurus bengalensis. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Prionailurus bengalensis. ORGANISM Mitochondrion Prionailurus bengalensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: D28890 LOCUS CATMT12RC 373 bp ds-DNA UNA 22-NOV-1994 DEFINITION Felis bengalensis mitochondrial gene for 12S rRNA, partial sequence. ACCESSION D28890 KEYWORDS 12S rRNA; 12S ribosomal RNA. SOURCE Mitochondrion Felis bengalensis (organelle Mitochondrion Felis bengalensis) DNA. ORGANISM Mitochondrion Felis bengalensis Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Carnivora; Feliforma; Felidae. REFERENCE 1 (bases 1 to 373) AUTHORS Masuda,R., Yoshida,M.C., Shinyashiki,F. and Bando,G. TITLE Molecular phylogenetic status of the Iriomote cat Felis iriomotensis, inferred from mitochondrial DNA sequence analysis JOURNAL Zoological Science 11, 597-604 (1994) STANDARD full automatic COMMENT Submitted (10-Mar-1994) to DDBJ by: Ryuichi Masuda Chromosome Research Unit Faculty of Science Hokkaido University North 10, West 8, Kita-ku Sapporo, Hokkaido 060 Japan Phone: 011-706-3541 Fax: 011-736-6304. NCBI gi: 571522 FEATURES Location/Qualifiers source 1..373 /organism="Mitochondrion Felis bengalensis" /mitochondrion /sequenced_mol="DNA" rRNA <1..>373 /product="12S rRNA" BASE COUNT 139 a 78 c 63 g 93 t ORIGIN BASE COUNT 139 a 78 c 63 g 93 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(----~~~ -----)---- 1261 ---------- ---------- ---~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCUU-AGC- CCUAAA-CUU 2521 A--GAUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a uuu(uaac)a a---A-ACUA 2701 U-C|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUCACC AUCUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aaa- 3181 aa-)------ A-AGUAAGCA CAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuuaac- 3781 ---------A CAAAAA-AGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-AU-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa ac---)---- ---------- ---------- UAG-AAcauc 4021 c--------- ------ACGA --AAAUC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-G--UA -U--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA AUUUGAGA(- auaga-ga-- --)GCUCAAU U-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.ben.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Prionailurus bengalensis. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Prionailurus bengalensis. ORGANISM Mitochondrion Prionailurus bengalensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: D28889 LOCUS CATMT12RB 373 bp ds-DNA UNA 22-NOV-1994 DEFINITION Felis bengalensis mitochondrial gene for 12S rRNA, partial sequence. ACCESSION D28889 KEYWORDS 12S rRNA; 12S ribosomal RNA. SOURCE Mitochondrion Felis bengalensis (organelle Mitochondrion Felis bengalensis) DNA. ORGANISM Mitochondrion Felis bengalensis Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Carnivora; Feliforma; Felidae. REFERENCE 1 (bases 1 to 373) AUTHORS Masuda,R., Yoshida,M.C., Shinyashiki,F. and Bando,G. TITLE Molecular phylogenetic status of the Iriomote cat Felis iriomotensis, inferred from mitochondrial DNA sequence analysis JOURNAL Zoological Science 11, 597-604 (1994) STANDARD full automatic COMMENT Submitted (10-Mar-1994) to DDBJ by: Ryuichi Masuda Chromosome Research Unit Faculty of Science Hokkaido University North 10, West 8, Kita-ku Sapporo, Hokkaido 060 Japan Phone: 011-706-3541 Fax: 011-736-6304. NCBI gi: 571521 FEATURES Location/Qualifiers source 1..373 /organism="Mitochondrion Felis bengalensis" /mitochondrion /sequenced_mol="DNA" rRNA <1..>373 /product="12S rRNA" BASE COUNT 139 a 79 c 63 g 92 t ORIGIN BASE COUNT 139 a 79 c 63 g 92 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(----~~~ -----)---- 1261 ---------- ---------- ---~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCUU-AGC- CCUAAA-CUU 2521 A--GAUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a uuu(uaac)a a---A-ACUA 2701 U-C|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUCACC AUCUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aaa- 3181 aa-)------ A-AGUAAGCA CAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuuaac- 3781 ---------A CAAAAA-AGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-AU-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa ac---)---- ---------- ---------- UAG-AAcacc 4021 c--------- ------ACGA --AAAUC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-G--UA -U--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA AUUUGAGA(- auaga-ga-- --)GCUCAAU U-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.b.iri 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Prionailurus bengalensis iriomotensis. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Prionailurus bengalensis iriomotensis. ORGANISM Mitochondrion Prionailurus bengalensis iriomotensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: D28888 LOCUS CATMT12RA 373 bp ds-DNA UNA 22-NOV-1994 DEFINITION Felis iriomotensis mitochondrial gene for 12S rRNA, partial sequence. ACCESSION D28888 KEYWORDS 12S rRNA; 12S ribosomal RNA. SOURCE Mitochondrion Felis iriomotensis (organelle Mitochondrion Felis iriomotensis) DNA. ORGANISM Mitochondrion Felis iriomotensis Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Carnivora; Feliforma; Felidae. REFERENCE 1 (bases 1 to 373) AUTHORS Masuda,R., Yoshida,M.C., Shinyashiki,F. and Bando,G. TITLE Molecular phylogenetic status of the Iriomote cat Felis iriomotensis, inferred from mitochondrial DNA sequence analysis JOURNAL Zoological Science 11, 597-604 (1994) STANDARD full automatic COMMENT Submitted (10-Mar-1994) to DDBJ by: Ryuichi Masuda Chromosome Research Unit Faculty of Science Hokkaido University North 10, West 8, Kita-ku Sapporo, Hokkaido 060 Japan Phone: 011-706-3541 Fax: 011-736-6304. NCBI gi: 571520 FEATURES Location/Qualifiers source 1..373 /organism="Mitochondrion Felis iriomotensis" /mitochondrion /sequenced_mol="DNA" rRNA <1..>373 /product="12S rRNA" BASE COUNT 139 a 79 c 63 g 92 t ORIGIN BASE COUNT 139 a 79 c 63 g 92 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(----~~~ -----)---- 1261 ---------- ---------- ---~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCUU-AGC- CCUAAA-CUU 2521 A--GAUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a uuu(uaac)a a---A-ACUA 2701 U-C|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUCACC AUCUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aaa- 3181 aa-)------ A-AGUAAGCA CAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuuaac- 3781 ---------A CAAAAA-AGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-AU-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa ac---)---- ---------- ---------- UAG-AAcacc 4021 c--------- ------ACGA --AAAUC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-G--UA -U--UAAAG- -GAGGAUUUA 4141 G-u--AGUAA AUUUGAGA(- auaga-ga-- --)GCUCAAU U-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~-~~~-~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~|| ||| // LOCUS mt.P.leo 5213 bp RNA RNA 05-MAR-1997 DEFINITION Mitochondrion Panthera leo.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION Y08505 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Panthera leo. ORGANISM Mitochondrion Panthera leo. REFERENCE 1 (bases 1 to 962) AUTHORS Ledje,C. TITLE Direct Submission JOURNAL Molecular Syst., Ints. of Genetics, Univ. of Lund, Solvegatan 29, S-223 62 Lund, SWEDEN Submitted (30-SEP-1996) C. Ledje, Division of Evolutionary STANDARD No information REFERENCE 2 (bases 1 to 962) AUTHORS Ledje,C. and Arnason,U. TITLE Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene JOURNAL J. Mol. Evol. 43 (6), 641-649 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y08505 BASE COUNT 345 a 231 c 171 g 215 t 4251 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCU-UU CCA-UUAGUU -A-UUAA-UA |AA-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUCCCGGU GAAAA---UG C|CCU-Uuaa --au-cac-- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----cua -----)---- 1261 ---------- ---------- -aug--auc- c-aAAGGAGC |--------- uGGUAUCA-- 1321 -AGCACAC-- -----(aacc auu------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--CAA C|ACCUU-GC --|------- (--uca-)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-UAUGAAU( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-GCUA-U- AU-UAAACUA ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 GACUA-AUAG A-------CU UACGGC|GUA AAGCGUGUUA -C-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------ag aaauauacau acuaaa--gu -----|UAAA CCUUAA-CUA ----GGCU(G 2341 UAAAA)AGCU GC-------A GUUA-ACAUA AAA------- ----auacag -cAC(-GAAA 2401 -)GU|a---- ----acuuua auacc----- ---------- ucc-GACCAC ACGAU-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 A--GAUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a ccc(aaac)a a---A-ACUA 2701 U-C|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AUCUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aag- 3181 aa-)------ A-AGUAAGCA CAA-GUGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuuaac- 3781 ---------A CAAAAA-AGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-G-AU-GG- ga-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ca au---)---- ---------- ---------- UAG-AAcacc 4021 c--------- ------ACGA --AAAuC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-G--CA -U--UCAAG- -GAGGAUUUA 4141 G-C--AGUAA AUUUGAGA(- auaga-ga-- --)GCUCAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UCG--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagug---- 4381 a-cua-guc- --ccuaaaga aaccuauuca aaccacuaca uc-------- -cacaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUGA ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.U.uncia 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Uncia uncia. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Uncia uncia. ORGANISM Mitochondrion Uncia uncia. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: D28897 LOCUS PNHMT12RC 373 bp ds-DNA UNA 22-NOV-1994 DEFINITION Panthera uncia mitochondrial gene for 12S rRNA, partial sequence. ACCESSION D28897 KEYWORDS 12S rRNA; 12S ribosomal RNA. SOURCE Mitochondrion Panthera uncia (organelle Mitochondrion Panthera uncia) DNA. ORGANISM Mitochondrion Panthera uncia Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Carnivora; Feliforma; Felidae. REFERENCE 1 (bases 1 to 373) AUTHORS Masuda,R., Yoshida,M.C., Shinyashiki,F. and Bando,G. TITLE Molecular phylogenetic status of the Iriomote cat Felis iriomotensis, inferred from mitochondrial DNA sequence analysis JOURNAL Zoological Science 11, 597-604 (1994) STANDARD full automatic COMMENT Submitted (10-Mar-1994) to DDBJ by: Ryuichi Masuda Chromosome Research Unit Faculty of Science Hokkaido University North 10, West 8, Kita-ku Sapporo, Hokkaido 060 Japan Phone: 011-706-3541 Fax: 011-736-6304. NCBI gi: 571535 FEATURES Location/Qualifiers source 1..373 /organism="Mitochondrion Panthera uncia" /mitochondrion /sequenced_mol="DNA" rRNA <1..>373 /product="12S rRNA" BASE COUNT 135 a 80 c 68 g 90 t ORIGIN BASE COUNT 135 a 80 c 68 g 90 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(----~~~ -----)---- 1261 ---------- ---------- ---~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCUU-AGC- CCUAAA-CCU 2521 A--GAUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------g cuc(aaac)a a---A-ACUA 2701 U-C|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AUCUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aag- 3181 aa-)------ A-AGGAAGCA CAA-GUGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuuaac- 3781 ---------G CAAAAA-AGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-AU-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ca ac---)---- ---------- ---------- UAG-AAcauc 4021 c--------- ------ACGA --AAAUC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-AA-G--UA -U--UCAAG- -GAGGAUUUA 4141 G-U--AGUAA AUUUGAGA(- auaga-ga-- --)GCUUAAU U-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.par.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Panthera pardus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Panthera pardus. ORGANISM Mitochondrion Panthera pardus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: D28895 LOCUS PNHMT12RA 373 bp ds-DNA MAM 22-NOV-1994 DEFINITION Panthera pardus mitochondrial gene for 12S rRNA, partial sequence. ACCESSION D28895 KEYWORDS 12S rRNA; 12S ribosomal RNA. SOURCE Mitochondrion Panthera pardus (organelle Mitochondrion Panthera pardus) DNA. ORGANISM Mitochondrion Panthera pardus Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Carnivora; Feliforma; Felidae. REFERENCE 1 (bases 1 to 373) AUTHORS Masuda,R., Yoshida,M.C., Shinyashiki,F. and Bando,G. TITLE Molecular phylogenetic status of the Iriomote cat Felis iriomotensis, inferred from mitochondrial DNA sequence analysis JOURNAL Zoological Science 11, 597-604 (1994) STANDARD full automatic COMMENT Submitted (10-Mar-1994) to DDBJ by: Ryuichi Masuda Chromosome Research Unit Faculty of Science Hokkaido University North 10, West 8, Kita-ku Sapporo, Hokkaido 060 Japan Phone: 011-706-3541 Fax: 011-736-6304. NCBI gi: 571536 FEATURES Location/Qualifiers source 1..373 /organism="Mitochondrion Panthera pardus" /mitochondrion /sequenced_mol="DNA" rRNA <1..>373 /product="12S rRNA" BASE COUNT 135 a 80 c 66 g 92 t ORIGIN BASE COUNT 135 a 80 c 66 g 92 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(----~~~ -----)---- 1261 ---------- ---------- ---~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCUU-AGC- CCUAAA-CCU 2521 A--GAUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------g ccc(aaac)a a---A-ACUA 2701 U-C|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AUCUCUUGUU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aag- 3181 aa-)------ A-AGUAAGCA CAA-GUGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuuauc- 3781 ---------A CAAAAA-AGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-G-AU-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ca ac---)---- ---------- ---------- UAG-AAcauc 4021 c--------- ------ACGA --AAAUC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-AA-G--UA -U--UCAAG- -GAGGAUUUA 4141 G-U--AGUAA AUUUGAGA(- auaga-ga-- --)GCUCAAU U-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.par.2 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Panthera pardus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Panthera pardus. ORGANISM Mitochondrion Panthera pardus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: D28896 LOCUS PNHMT12R9 373 bp ds-DNA MAM 12-NOV-1994 DEFINITION Mitochondrion Panthera pardus 12S rRNA gene. ACCESSION D28896 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Panthera pardus (organelle Mitochondrion Panthera pardus) DNA. ORGANISM Mitochondrion Panthera pardus Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Carnivora; Feliforma; Felidae. REFERENCE 1 (bases 1 to 373) AUTHORS Masuda,R., Yoshida,M.C., Shinyashiki,F. and Bando,G. TITLE Molecular phylogenetic status of the Iriomote cat Felis iriomotensis, inferred from mitochondrial DNA sequence analysis JOURNAL Zoological Science 11, 597-604 (1994) STANDARD full automatic COMMENT Submitted (10-Mar-1994) to DDBJ by: Ryuichi Masuda Chromosome Research Unit Faculty of Science Hokkaido University North 10, West 8, Kita-ku Sapporo, Hokkaido 060 Japan Phone: 011-706-3541 Fax: 011-736-6304. NCBI gi: 571537 FEATURES Location/Qualifiers source 1..373 /organism="Mitochondrion Panthera pardus" /mitochondrion /sequenced_mol="DNA" rRNA 1..373 /partial /product="12S rRNA" BASE COUNT 135 a 81 c 66 g 91 t ORIGIN BASE COUNT 135 a 81 c 66 g 91 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(----~~~ -----)---- 1261 ---------- ---------- ---~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCUU-AGC- CCUAAA-CCU 2521 A--GAUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------g ccc(aaac)a a---A-ACUA 2701 U-C|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AUCUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aag- 3181 aa-)------ A-AGUAAGCA CAA-GUGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuuauc- 3781 ---------A CAAAAA-AGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-G-AU-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ca ac---)---- ---------- ---------- UAG-AAcauc 4021 c--------- ------ACGA --AAAUC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-AA-G--UA -U--UCAAG- -GAGGAUUUA 4141 G-U--AGUAA AUUUGAGA(- auaga-ga-- --)GCUCAAU U-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.tigri 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Panthera tigris. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Panthera tigris. ORGANISM Mitochondrion Panthera tigris. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: D28898 LOCUS PNHMT12RD 373 bp ds-DNA MAM 22-NOV-1994 DEFINITION Panthera tigris mitochondrial gene for 12S rRNA, partial sequence. ACCESSION D28898 KEYWORDS 12S rRNA; 12S ribosomal RNA. SOURCE Mitochondrion Panthera tigris (organelle Mitochondrion Panthera tigris) DNA. ORGANISM Mitochondrion Panthera tigris Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Carnivora; Feliforma; Felidae. REFERENCE 1 (bases 1 to 373) AUTHORS Masuda,R., Yoshida,M.C., Shinyashiki,F. and Bando,G. TITLE Molecular phylogenetic status of the Iriomote cat Felis iriomotensis, inferred from mitochondrial DNA sequence analysis JOURNAL Zoological Science 11, 597-604 (1994) STANDARD full automatic COMMENT Submitted (10-Mar-1994) to DDBJ by: Ryuichi Masuda Chromosome Research Unit Faculty of Science Hokkaido University North 10, West 8, Kita-ku Sapporo, Hokkaido 060 Japan Phone: 011-706-3541 Fax: 011-736-6304. NCBI gi: 571538 FEATURES Location/Qualifiers source 1..373 /organism="Mitochondrion Panthera tigris" /mitochondrion /sequenced_mol="DNA" rRNA <1..>373 /product="12S rRNA" BASE COUNT 138 a 80 c 66 g 89 t ORIGIN BASE COUNT 138 a 80 c 66 g 89 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(----~~~ -----)---- 1261 ---------- ---------- ---~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCUU-AGC- CCUAAA-CCU 2521 A--GAUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a ccc(aaac)a a---A-ACUA 2701 U-C|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUGUAGA|G GAGCCUGU-U |CCAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AUCUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aag- 3181 aa-)------ A-AGUAAGCA CAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuuaac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-AU-GG- GA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ca ac---)---- ---------- ---------- UAG-AAcauc 4021 c--------- ------ACGA --AAAUC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-AA-G--UA -U--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA AUUCGAGA(- auaga-ga-- --)GCUCGAU U-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (21)-Herpe 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.H.aurop 5213 bp RNA RNA 05-MAR-1997 DEFINITION Mitochondrion Herpestes auropunctatus.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION Y08506 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Herpestes auropunctatus. ORGANISM Mitochondrion Herpestes auropunctatus. REFERENCE 1 (bases 1 to 957) AUTHORS Ledje,C. TITLE Direct Submission JOURNAL 29, S-223 62 Lund, SWEDEN Submitted (30-SEP-1996) C. Ledje, Division of Evolutionary Molecular Syst., Ints. of Genetics, Univ. of Lund, Solvegatan STANDARD No information REFERENCE 2 (bases 1 to 957) AUTHORS Ledje,C. and Arnason,U. TITLE Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene JOURNAL J. Mol. Evol. 43 (6), 641-649 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y08506 BASE COUNT 347 a 239 c 168 g 203 t 4256 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaGGGUU 661 (UGG-)U-CC U|GGCCC-UU CCA-UUAGUU -A-CUAA-UA |GG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUCCCGGU GAAAA---UG C|CCU-Cuaa --gu-ca--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----uaa -----)---- 1261 ---------- ---------- -cug--acc- u-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACAC-- -----(aa-a au-------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UAA C|GCCUU-GC --|------- (--uca-)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG CUA----C-A 1501 GCA|GUG-AC AAAAAUUAAG C-CAUGAAU( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-GCCA-U- AU-UAAAUCA ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -AAC-CCA-- 1981 GACUA-AUAG A-------CA CACGGC|GUA AAGCGUGUUC -C-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------aa -caaccuacc acuaaa--gu -----|UAAA CCUUAA-CUA ----AGCC(G 2341 UAAAA)AGCC AC-------A GUUA-ACAUG AAA------- ----auacaa -cAC(-GAAA 2401 -)GU|a---- ----acuuua auacc----- ---------- -cc-aACUAC ACGAC-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-UCU 2521 A--GAUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- acu(uaac)a a---A-CCUA 2701 U-C|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACCUCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(aau- 3181 aa-)------ C-AGUAAGCA AAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuuaac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC CAU------- ---------G 3841 A-G-GU-GG- aa-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ac---)---- ---------- ---------- AAG-AAcauc 4021 uu-------- ------ACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) C-AA-A--AA -C--UAAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CUGAGA(- auaga-gc-- --)GCUCAGC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UCG--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 -caca-aac- --ccaaacau aaccuauuaa aaucacacuu aa-------- -uacaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUUA aa-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.suric 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Suricata suricatta. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Suricata suricatta. ORGANISM Mitochondrion Suricata suricatta. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: D28899 LOCUS SSUMT12R 371 bp ds-DNA UNA 22-NOV-1994 DEFINITION Suricata suricatta mitochondrial gene for 12S rRNA, partial sequence. ACCESSION D28899 KEYWORDS 12S rRNA; 12S ribosomal RNA. SOURCE Mitochondrion Suricata suricatta (organelle Mitochondrion Suricata suricatta) DNA. ORGANISM Mitochondrion Suricata suricatta Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Carnivora; Feliforma; Felidae. REFERENCE 1 (bases 1 to 371) AUTHORS Masuda,R., Yoshida,M.C., Shinyashiki,F. and Bando,G. TITLE Molecular phylogenetic status of the Iriomote cat Felis iriomotensis, inferred from mitochondrial DNA sequence analysis JOURNAL Zoological Science 11, 597-604 (1994) STANDARD full automatic COMMENT Submitted (10-Mar-1994) to DDBJ by: Ryuichi Masuda Chromosome Research Unit Faculty of Science Hokkaido University North 10, West 8, Kita-ku Sapporo, Hokkaido 060 Japan Phone: 011-706-3541 Fax: 011-736-6304. NCBI gi: 572501 FEATURES Location/Qualifiers source 1..371 /organism="Mitochondrion Suricata suricatta" /mitochondrion /sequenced_mol="DNA" rRNA <1..>371 /product="12S rRNA" BASE COUNT 137 a 83 c 65 g 86 t ORIGIN BASE COUNT 137 a 83 c 65 g 86 t 4842 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(----~~~ -----)---- 1261 ---------- ---------- ---~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCUU-AGC- CAUAAA-CUU 2521 A--GGUA-GU |UG|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- acu(aaac)a a---A-CCUA 2701 U-C|--C|GC C-AGAG-AAC UACUAGC(-- -AAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AC CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACCUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCG(U --AAA)AGG- -----(aau- 3181 aa-)------ C-AGUAAGCA AAA-AUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuuaac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC CAU------- ---------G 3841 A-G-GU-GG- AA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua c----)---- ---------- ---------- AAG-AAcacc 4021 cu-------- ------ACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) C-AA-A--AA -C--CAAAG- -GAGGAUUUA 4141 G-U--AGUAa g-ccaaga(- auaga-gu-- --)GCUUGAC U-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (21)-Muste 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.E.lutri 5213 bp RNA RNA 05-MAR-1997 DEFINITION Mitochondrion Enhydra lutris.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION Y08512 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Enhydra lutris. ORGANISM Mitochondrion Enhydra lutris. REFERENCE 1 (bases 1 to 963) AUTHORS Ledje,C. TITLE Direct Submission JOURNAL 29, S-223 62 Lund, SWEDEN Submitted (30-SEP-1996) C. Ledje, Division of Evolutionary Molecular Syst., Ints. of Genetics, Univ. of Lund, Solvegatan STANDARD No information REFERENCE 2 (bases 1 to 963) AUTHORS Ledje,C. and Arnason,U. TITLE Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene JOURNAL J. Mol. Evol. 43 (6), 641-649 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y08512 BASE COUNT 352 a 214 c 173 g 224 t 4250 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|AGCCU-UC CUA-UUAAUU -A-UUAA-CA |GA-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCAUCCCGGU GAAAA---UG C|CCU-Cuaa --ac-ccu-- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----uau -----)---- 1261 ---------- ---------- -gcg--auu- a-aAAGGAGC |--------- uGGUAUCA-- 1321 -AGCGCAC-- -----(uuac aa-------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UAA C|GCCUU-GC --|------- (--uca-)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-GUCA-U- GU-UAACAUU ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- --------ga GAGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 GAUUA-AUAG G-------CC CACGGC|GUA AAACGUGUCA -A-gga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------uu -acaaa--au acuaaa--gu -----|UAAA AUUUAA-CUA ----GGCC(G 2341 UAAAA)AGCU AC-------U GUUA-AUAUA AAA------- -----uauac -cAC(-GAAA 2401 -)GU|g---- ----accuua cuauu----- ---------- ucc-GACUAC ACGAC-AGCU 2461 G-AGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CCUAAA-CAU 2521 G--GAUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aca(caac)a a---A-AUUA 2701 U-C|--U|GC C-AGAG-AAC UACUAGC(-- -AAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-CC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC ACUUCUAGCU ---------- ---------- 2881 (-------aa au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(C AAAAA)AGG- -----(aag- 3181 ga-)------ A-AGUAAGCA CGA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aauac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 A-A-GU-GG- ga-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au c----)---- ---------- ---------- AAG-AAcaca 4021 cuc------- ------ACGA --AAGUC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAuc--) U-AG-A--GA -C--UAAAG- -GUGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU U--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gagca---- 4381 --aua-uac- ---ccaaaua cuacauaauu uauaaacuga acuaa----- -agcaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA au-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.meles 5213 bp RNA RNA 05-MAR-1997 DEFINITION Mitochondrion Meles meles.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION Y08513 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Meles meles. ORGANISM Mitochondrion Meles meles. REFERENCE 1 (bases 1 to 959) AUTHORS Ledje,C. TITLE Direct Submission JOURNAL Molecular Syst., Ints. of Genetics, Univ. of Lund, Solvegatan 29, S-223 62 Lund, SWEDEN Submitted (30-SEP-1996) C. Ledje, Division of Evolutionary STANDARD No information REFERENCE 2 (bases 1 to 959) AUTHORS Ledje,C. and Arnason,U. TITLE Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene JOURNAL J. Mol. Evol. 43 (6), 641-649 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y08513 BASE COUNT 357 a 207 c 168 g 227 t 4254 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|AGCCU-UC CUA-UUAAUU -A-UUAA-CA |GA-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCGGU GAAAA---UG C|CCU-Cuaa --au-ccc-- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----aua -----)---- 1261 ---------- ---------- --ug--auu- g-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACAC-- -----(uaaa caa------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UAA C|ACCUU-GC --|------- (--uca-)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUCA-U- GU-UAAUGCU ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- --------aa GAGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUAG G-------CC CACGGC|GUA AAACGUGUUA ---agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------au -uaucauuau acuaaa--gu -----|UAAA AUUUAA-CCA ----GGCC(G 2341 UAAAA)AGCU AC-------U GUUA-AUAUA AAA------- -----uguac -cAC(-GAAA 2401 -)GU|g---- ----acuuua uucau----- ---------- ucc-GAUAAC ACGAU-AGCU 2461 G-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CUUAAA-CAU 2521 A--GAUA-AC |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aca(gaac)a a---A-ACUA 2701 U-C|--U|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC CUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUCUAGCU ---------- ---------- 2881 (-------aa au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU UUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(aag- 3181 aa-)------ A-AGUAAGCA CAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aauac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC CAU------- ---------G 3841 A-A-GU-GG- ga-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au c----)---- ---------- ---------- AAG-AGcaua 4021 cuc------- ------ACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAuu--) U-AA-A--AA -C--UAAAG- -GUGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 --gca-uac- ---ccaagca uuacauaaua aaauuacauu aa-------- -gacaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGAGUAA au-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.mephi 5213 bp RNA RNA 05-MAR-1997 DEFINITION Mitochondrion Mephitis mephitis.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION Y08517 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Mephitis mephitis. ORGANISM Mitochondrion Mephitis mephitis. REFERENCE 1 (bases 1 to 955) AUTHORS Ledje,C. TITLE Direct Submission JOURNAL 29, S-223 62 Lund, SWEDEN Submitted (30-SEP-1996) C. Ledje, Division of Evolutionary Molecular Syst., Ints. of Genetics, Univ. of Lund, Solvegatan STANDARD No information REFERENCE 2 (bases 1 to 955) AUTHORS Ledje,C. and Arnason,U. TITLE Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene JOURNAL J. Mol. Evol. 43 (6), 641-649 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y08517 BASE COUNT 345 a 212 c 173 g 225 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUA-UUGGCC -C-UUAG-CA |AA-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCCUACCAGU GAGAA---UG C|CCU-Ucaa --au-cau-- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---aaau -----)---- 1261 ---------- ---------- -cug--auu- a-aAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACGC-- -----(caau aa-------- ---------- ---------- ------)--- 1381 ---GC|---A GCUCA--UAA C|GCCUU-GC --|------- (--uca-)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AC AAAAAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-GUUA-U- GC-UAACAAA ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCU-- 1981 AGUCA-AUAG G-------CC AACGGC|GUA AAACGUGUUA -A-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------ga -auuacuua- acuaaa--gu -----|UAAA AUUUAA-UUA ----AGCU(G 2341 UAGAA)AGCU AU-------U GUUA-UUAUA AAA------- -----uaaac -uAC(-GAAA 2401 -)GU|g---- ----acuuua uuacc----- ---------- ucu-GAUUAC ACGAC-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CAC 2521 A--GACA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aua(uaac)a a---A-AUUG 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA G-ACCUCACC GUUUCUAGCU ---------- ---------- 2881 (-------aa uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(cac- 3181 ac-)------ A-AGUAAGCA CAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----acgac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 A-A-AC-GG- ga-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua ac---)---- ---------- ---------- AAG-AGcauu 4021 uu-------- ------ACGA --AAGAC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-AA-A--GA -C--CGAAG- --AGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 --acu-cua- --uuuagaca caaca-uaua acucugcccu aa-------- -uacaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)GGU-GC- GCUUGGAUAA a--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.nival 5213 bp RNA RNA 05-MAR-1997 DEFINITION Mitochondrion Mustela nivalis.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION Y08515 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Mustela nivalis. ORGANISM Mitochondrion Mustela nivalis. REFERENCE 1 (bases 1 to 959) AUTHORS Ledje,C. TITLE Direct Submission JOURNAL Submitted (30-SEP-1996) C. Ledje, Division of Evolutionary Molecular Syst., Ints. of Genetics, Univ. of Lund, Solvegatan 29, S-223 62 Lund, SWEDEN STANDARD No information REFERENCE 2 (bases 1 to 959) AUTHORS Ledje,C. and Arnason,U. TITLE Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene JOURNAL J. Mol. Evol. 43 (6), 641-649 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y08515 BASE COUNT 357 a 216 c 169 g 217 t 4254 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UC CUA-UUGAUU -A-UUAA-CA |GA-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCAUCCCGGU GAAAA---UG C|CCU-Cuaa --au-cua-- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---cuua -----)---- 1261 ---------- ---------- -ucg--auu- a-aAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACAC-- -----(uaau ua-------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UAA C|GCCUU-GC --|------- (--ucg-)-- -------Ac| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCCA-U- GU-UAACACA ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- --------ga GAGCU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AGC-CCG-- 1981 AACCA-AUAG G-------CA AACGGC|GUA AAACGUGUUA ---agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------ac -uauau-uau acuaaa--gu -----|UAAA AUUUAG-CAA ----GGCC(G 2341 UAAAA)AGCU AC-------U GCUA-AUACA AGA------- -----uaaac -cAC(-GAAA 2401 -)GU|g---- ----acuuua uuacc----- ---------- ucc-AACAAC ACGAU-AGCU 2461 G-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CCUAAA-CAU 2521 A--AAUA-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uca(caac)a a---A-AUUA 2701 U-U|--U|GC C-AGAG-AAC UACUAGC(-- -AAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUCUAGCU ---------- ---------- 2881 (-------aa au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(aag- 3181 aa-)------ A-AGUAAGCA CAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aauac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC CAU------- ---------G 3841 A-A-GU-GG- ga-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au c----)---- ---------- ---------- AAG-AAcaca 4021 cuc------- ------ACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAau--) U-AA-A--AA -C--UAAAG- -GCGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagca---- 4381 --aua-cac- ---ccaaaca cuacauaaua aaacucacuc aa-------- -agcaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGGUAA au-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.putor 5213 bp RNA RNA 05-MAR-1997 DEFINITION Mitochondrion Mustela putorius.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION Y08516 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Mustela putorius. ORGANISM Mitochondrion Mustela putorius. REFERENCE 1 (bases 1 to 959) AUTHORS Ledje,C. TITLE Direct Submission JOURNAL Molecular Syst., Ints. of Genetics, Univ. of Lund, Solvegatan 29, S-223 62 Lund, SWEDEN Submitted (30-SEP-1996) C. Ledje, Division of Evolutionary STANDARD No information REFERENCE 2 (bases 1 to 959) AUTHORS Ledje,C. and Arnason,U. TITLE Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene JOURNAL J. Mol. Evol. 43 (6), 641-649 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y08516 BASE COUNT 360 a 205 c 168 g 226 t 4254 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCU-UC CUA-UUGAUU -A-UUAA-CA |GA-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCACCCCAGU GAGAA---UG C|CCU-Ccaa --au-cua-- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---uaug -----)---- 1261 ---------- ---------- -uug--auu- a-aAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACAC-- -----(uaaa uua------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UAA C|GCCUU-GC --|------- (--uca-)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCCA-U- GU-UAACAAA ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AGC-CCG-- 1981 AAUCA-AUAG G-------CA AACGGC|GUA AAACGUGUUA -A-gga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------uu -auauuauau --uaaa--gu -----|uAAA AUUUGA-CAA ----GGCU(G 2341 UAAAA)AGCU AC-------U GUUA-AUAUA AGA------- -----uaaac -cAC(-GAAA 2401 -)GU|g---- ----acuuua uuacu----- ---------- ucc-AUCAAC ACGAU-AGCU 2461 G-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CCUAAA-CAU 2521 A--AAUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uca(caac)a a---A-AUUA 2701 U-C|--U|GC C-AGAG-AAC UACUAGC(-- -AAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA G-ACCUCACC ACUUCUAGCU ---------- ---------- 2881 (-------ua au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --AAA)GGG- -----(aag- 3181 aa-)------ A-AGUAAGCA CAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---auu-ac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 A-A-GU-GG- ga-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ac c----)---- ---------- ---------- AAG-AAcaca 4021 cuc------- ------ACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAac--) U-AA-A--AA -C--UAAAG- -GUGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--GGCC 4261 AUAAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagca---- 4381 --aca-cac- ---ucaaaua cuacauaaua aaaguaaacc uaa------- -agcaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGGUAA au-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.vison 5213 bp RNA RNA 05-MAR-1997 DEFINITION Mitochondrion Mustela vison.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION Y08514 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Mustela vison. ORGANISM Mitochondrion Mustela vison. REFERENCE 1 (bases 1 to 959) AUTHORS Ledje,C. TITLE Direct Submission JOURNAL Molecular Syst., Ints. of Genetics, Univ. of Lund, Solvegatan 29, S-223 62 Lund, SWEDEN Submitted (30-SEP-1996) C. Ledje, Division of Evolutionary STANDARD No information REFERENCE 2 (bases 1 to 959) AUTHORS Ledje,C. and Arnason,U. TITLE Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene JOURNAL J. Mol. Evol. 43 (6), 641-649 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y08514 BASE COUNT 357 a 207 c 168 g 227 t 4254 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|AGCCU-UC CUA-UUAAUU -A-UUAA-CA |GA-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCGGU GAAAA---UG C|CCU-Cuaa --au-ccc-- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----aua -----)---- 1261 ---------- ---------- --ug--auu- g-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACAC-- -----(uaaa caa------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UAA C|ACCUU-GC --|------- (--uca-)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUCA-U- GU-UAAUGCU ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- --------aa GAGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUAG G-------CC CACGGC|GUA AAACGUGUUA ---agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------au -uaucauuau acuaaa--gu -----|UAAA AUUUAA-CCA ----GGCC(G 2341 UAAAA)AGCU AC-------U GUUA-AUAUA AAA------- -----uguac -cAC(-GAAA 2401 -)GU|g---- ----acuuua uucau----- ---------- ucc-GAUAAC ACGAU-AGCU 2461 G-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CUUAAA-CAU 2521 A--GAUA-AC |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aca(gaac)a a---A-ACUA 2701 U-C|--U|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC CUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUCUAGCU ---------- ---------- 2881 (-------aa au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU UUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(aag- 3181 aa-)------ A-AGUAAGCA CAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aauac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC CAU------- ---------G 3841 A-A-GU-GG- ga-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au c----)---- ---------- ---------- AAG-AGcaua 4021 cuc------- ------ACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAuu--) U-AA-A--AA -C--UAAAG- -GUGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 --gca-uac- ---ccaagca uuacauaaua aaauuacauu aa-------- -gacaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGAGUAA au-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.putor 5213 bp RNA RNA 05-MAR-1997 DEFINITION Mitochondrion Spilogale putorius.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION Y08518 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Spilogale putorius. ORGANISM Mitochondrion Spilogale putorius. REFERENCE 1 (bases 1 to 954) AUTHORS Ledje,C. TITLE Direct Submission JOURNAL 29, S-223 62 Lund, SWEDEN Submitted (30-SEP-1996) C. Ledje, Division of Evolutionary Molecular Syst., Ints. of Genetics, Univ. of Lund, Solvegatan STANDARD No information REFERENCE 2 (bases 1 to 954) AUTHORS Ledje,C. and Arnason,U. TITLE Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene JOURNAL J. Mol. Evol. 43 (6), 641-649 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y08518 BASE COUNT 356 a 206 c 169 g 223 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|GGCCU-UC CUA-UUAGCC -C-UUAA-CA |AA-CU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- uCCUACCAGU GAAAA---UG C|CCU-Auag --au-ccu-- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----aaa -----)---- 1261 ---------- ---------- -cug--auc- a-aAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACGC-- -----(uaau aa-------- ---------- ---------- ------)--- 1381 ---GC|---A GCUCA--UAA C|ACCUU-GC --|------- (--uca-)-- -------Ac| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-GUUA-U- GU-UAACAAA ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGAUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAU-CCC-- 1981 AGUUA-AUAG G-------CA AACGGC|GUA AAACGUGUUA -A-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -auuaauuca acuaaa--gu -----|UAAA AUUUAA-UUA ----AGCC(G 2341 UAAAA)AGCU AU-------U GUUA-AUAUA AAA------- -----uaaac -uAC(-GAAA 2401 -)GU|g---- ----acuuua auaac----- ---------- ucu-GACCAC ACGAC-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CAC 2521 A--AACA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- gua(uaac)a a---A-ACUG 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC CUG--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC GUUCCUAGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(aau- 3181 au-)------ A-AGUAAGCA CAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aagac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC CAU------- ---------G 3841 G-A-AC-GG- ga-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa -c---)---- ---------- ---------- AAG-AAuacc 4021 u--------- ------ACGA --AAGAC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-AA-A--GA -C--CAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AGG--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 --aua-aca- -ucaaaauau aauauauuaa caucuacuuc a--------- -uacaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGAUUA a--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (21)-Procy 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.A.ful.c 5213 bp RNA RNA 05-MAR-1997 DEFINITION Mitochondrion Ailurus fulgens.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION Y08511 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Ailurus fulgens. ORGANISM Mitochondrion Ailurus fulgens. REFERENCE 1 (bases 1 to 964) AUTHORS Ledje,C. TITLE Direct Submission JOURNAL Submitted (30-SEP-1996) C. Ledje, Division of Evolutionary Molecular Syst., Ints. of Genetics, Univ. of Lund, Solvegatan 29, S-223 62 Lund, SWEDEN STANDARD No information REFERENCE 2 (bases 1 to 964) AUTHORS Ledje,C. and Arnason,U. TITLE Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene JOURNAL J. Mol. Evol. 43 (6), 641-649 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y08511 BASE COUNT 354 a 213 c 166 g 231 t 4249 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCU-UC CCG-UUAGUU -C-UUAA-UA |AA-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCACCCCAGU GAAAA---UG C|CCU-Ccaa --au-cac-- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----uag -----)---- 1261 ---------- ---------- -uug--auu- a-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACACuu -----(-uac au-------- ---------- ---------- ------)--- 1381 -aagu|---A GCUCA--CAA C|ACCUU-GC --|------- (--uua-)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AU-UAAUAGA ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-ACGG G-------CA UCCGGC|GUA AAACGUGUUA -A-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------a -ucuacucac auuaaa--gu -----|UAAA ACUUAA-UCA ----GGCC(G 2341 UAAAA)AGCU AC-------C GUUA-ACAUA AAA------- -----uaccu -uAC(-GAAA 2401 -)GU|a---- ----acuuua uuaau----- ---------- ucu-GAUUAC ACGAC-AGCU 2461 A-AGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 A--AAUA-GU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a gua(uaac)a a---A-ACUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AAUA--)GC CUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-CC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUUACC ACUUCUAGCU ---------- ---------- 2881 (-------ac uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(C --AAA)AGG- -----(aag- 3181 ca-)------ A-AGUAAGCA UAA-UGAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---uccugc- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC CAU------- ---------G 3841 A-A-GU-GG- aa-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- aac--)---- ---------- ---------- AAG-AAcacu 4021 au-------- ------ACGA --AAAUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-AA-A--AC -C--UAAAG- -GUGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUG--GGCU 4261 AUAAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaacg---- 4381 --uca-aga- uuuaaaccca auauauaauc acaacagacu aaa------- -cgcaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)GGU-GU- GCUUGGAUAA ac-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.ful.p 5213 bp RNA RNA 18-NOV-1993 DEFINITION Mitochondrion Ailurus fulgens.; 12S ribosomal RNA. ACCESSION L21885 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Ailurus fulgens. ORGANISM Mitochondrion Ailurus fulgens. REFERENCE 1 (bases 1 to 349) AUTHORS Zhang,Y.-P. and Ryder,O.A. TITLE Mitochondrial DNA sequence evolution in the Arctoidea JOURNAL Proc. Natl. Acad. Sci. U.S.A. 90, 9557-9561 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L21885 NCBI gi: 417984 BASE COUNT 135 a 67 c 59 g 88 t 4864 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~-)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 A--AAUA-GU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a gua(uaac)a a---A-ACUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AAUA--)GC CUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-CC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUUACC ACUUCUAGCU ---------- ---------- 2881 (-------ac uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(C --AAA)AGG- -----(aag- 3181 ca-)------ A-AGUAAGCA UAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cccugc 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC CAU------- ---------G 3841 A-A-GU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- aau--)---- ---------- ---------- AAG-AAcauu 4021 au-------- ------ACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-AA-A--AC -C--UAAAG- -GUGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)G~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.B.gabbi 5213 bp RNA RNA 05-MAR-1997 DEFINITION Mitochondrion Bassaricyon gabbii.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION Y08509 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Bassaricyon gabbii. ORGANISM Mitochondrion Bassaricyon gabbii. REFERENCE 1 (bases 1 to 966) AUTHORS Ledje,C. TITLE Direct Submission JOURNAL Submitted (30-SEP-1996) C. Ledje, Division of Evolutionary Molecular Syst., Ints. of Genetics, Univ. of Lund, Solvegatan 29, S-223 62 Lund, SWEDEN STANDARD No information REFERENCE 2 (bases 1 to 966) AUTHORS Ledje,C. and Arnason,U. TITLE Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene JOURNAL J. Mol. Evol. 43 (6), 641-649 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y08509 BASE COUNT 351 a 237 c 176 g 202 t 4247 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|GGCCU-UC CCA-UUAGUU -C-CUAA-CA |GA-CU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCGCCCCAGU GAAAA---UG C|CCU-Ccaa --au-cac-- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---acug -----)---- 1261 ---------- ---------- -gug--auc- a-aAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACACua -----(-aaa c--------- ---------- ---------- ------)--- 1381 -aagu|---A GCUCA--CAA C|ACCUU-GC --|------- (--uca-)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UUA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-UAUGAAC( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-GUCA-U- GU-UAACAAA ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-C ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAG G-------UC UACGGC|GUA AAACGUGUUA -A-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------cg -auacacaac acuaaa--gu -----|UAAA AUCUGG-CCA ----GGCU(G 2341 UAAAA)AGCU AC-------U GCCG-GUACA AAA------- -----uauac -cAC(-GAAA 2401 -)GU|g---- ----acuuua cugac----- ---------- ucu-GACCAC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 A--AAUA-AU |CU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- --------ca gua(caac)a a---G-AUUA 2701 C-U|--U|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUCCUAGCU ---------- ---------- 2881 (-------aa au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(aac- 3181 aa-)------ A-AGUAAGCA CAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---c-aaac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC CAU------- ---------G 3841 G-A-GU-GG- ga-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- agu--)---- ---------- ---------- AAG-AAcaca 4021 cucau----- ------ACGA --AAGUU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-G--AA -C--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-CUAAGA(- auaga-gu-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -cuG--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagca---- 4381 --acg-caa- -cccaaacac aacauauuaa ucaaccaacc aa-------- -ugcaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUCA au-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.N.nasua 5213 bp RNA RNA 18-NOV-1993 DEFINITION Mitochondrion Nasua nasua.; 12S ribosomal RNA. ACCESSION L21888 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Nasua nasua. ORGANISM Mitochondrion Nasua nasua. REFERENCE 1 (bases 1 to 348) AUTHORS Zhang,Y.-P. and Ryder,O.A. TITLE Mitochondrial DNA sequence evolution in the Arctoidea JOURNAL Proc. Natl. Acad. Sci. U.S.A. 90, 9557-9561 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L21888 NCBI gi: 418030 BASE COUNT 139 a 67 c 61 g 81 t 4865 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~-)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 A--AAUA-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- --------ag aua(uaac)a a---A-ACUA 2701 U-C|--U|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUCUGGCU ---------- ---------- 2881 (-------aa ac-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(aau- 3181 aa-)------ A-AGUAAGCA CAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaauc- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 A-A-GU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- agc--)---- ---------- ---------- AAG--Acaca 4021 c--------- ------ACGA --AAGUC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAa-u-) U-AA-G--GA -C--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)G~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.flavu 5213 bp RNA RNA 18-NOV-1993 DEFINITION Mitochondrion Potos flavus.; 12S ribosomal RNA. ACCESSION L21886 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Potos flavus. ORGANISM Mitochondrion Potos flavus. REFERENCE 1 (bases 1 to 350) AUTHORS Zhang,Y.-P. and Ryder,O.A. TITLE Mitochondrial DNA sequence evolution in the Arctoidea JOURNAL Proc. Natl. Acad. Sci. U.S.A. 90, 9557-9561 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L21886 NCBI gi: 418041 BASE COUNT 131 a 70 c 68 g 81 t 4863 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~-)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 A--GAUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(caac)a a---A-AUUA 2701 U-U|--U|GC C-AGAG-AAC UACUAGC(-- -AAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-CC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUCUUGCU ---------- ---------- 2881 (-------aa au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC CU-CA|G-CA AAC-|CCU(U --UAA)AGG- -----(gag- 3181 aa-)------ A-AGUAAGCA CAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uagcgc 3781 ---------G UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- aac--)---- ---------- ---------- AAG-AAcauc 4021 acac------ ------ACGA --AAGCC-UC C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-GG-A--AG -C--CAAAG- -GUGGAUUUA 4141 G-U--AGUAA A-UCGAGA(- auaga-ga-- --)G~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.lot.c 5213 bp RNA RNA 05-MAR-1997 DEFINITION Mitochondrion Procyon lotor.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION Y08510 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Procyon lotor. ORGANISM Mitochondrion Procyon lotor. REFERENCE 1 (bases 1 to 962) AUTHORS Ledje,C. TITLE Direct Submission JOURNAL Submitted (30-SEP-1996) C. Ledje, Division of Evolutionary Molecular Syst., Ints. of Genetics, Univ. of Lund, Solvegatan 29, S-223 62 Lund, SWEDEN STANDARD No information REFERENCE 2 (bases 1 to 962) AUTHORS Ledje,C. and Arnason,U. TITLE Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene JOURNAL J. Mol. Evol. 43 (6), 641-649 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y08510 BASE COUNT 352 a 213 c 172 g 225 t 4251 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|GGCCU-UC CUA-UUAGUU -C-UUGA-CA |AA-UU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCAUCCCAGU GAAAUa--UG C|CCU-Ccaa --au-cac-- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---ucca -----)---- 1261 ---------- ---------- -aug--auu- a-aAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACACua -----(-aua c--------- ---------- ---------- ------)--- 1381 -uagu|---A GCUCA--CGA C|ACCUU-GC --|------- (--uca-)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-GUUA-U- GU-CAAUGA- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-C ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUAG G-------CC CACGGC|GUA AAACGUGUCA -A-aaa---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ---ccuccac acuaaa--gu -----|UAAA ACCUGG-CCA ----GGCC(G 2341 UAAAA)AGCA AU-------U GCCA-GCAUA AAA------- -----uaaac -uAC(-GAAA 2401 -)GU|g---- ----acuuua uuac------ ---------- ccu-AAUUAC ACGAU-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-CAU 2521 A--AAUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- acg(uaac)a a---A-AUUA 2701 U-U|--U|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AUCUCUAGCU ---------- ---------- 2881 (-------aa au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(aag- 3181 ag-)------ C-AGUAAGCA CAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aauac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 A-G-GU-GG- ga-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au aaa-u)---- ---------- ---------- AAG-AAuaua 4021 uacc------ ------ACGG --AAAUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-A--AA -U--CAAAG- -GUGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUG--GGCC 4261 AUAAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagca---- 4381 --gua-gua- auucaaccac aauauauuaa cggauaaauu aa-------- -uguaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)GGU-GU- GCUUGGAUUA au-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.lot.p 5213 bp RNA RNA 18-NOV-1993 DEFINITION Mitochondrion Procyon lotor.; 12S ribosomal RNA. ACCESSION L22163 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Procyon lotor. ORGANISM Mitochondrion Procyon lotor. REFERENCE 1 (bases 1 to 352) AUTHORS Zhang,Y.-P. and Ryder,O.A. TITLE Mitochondrial DNA sequence evolution in the Arctoidea JOURNAL Proc. Natl. Acad. Sci. U.S.A. 90, 9557-9561 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L22163 NCBI gi: 418033 BASE COUNT 142 a 62 c 60 g 88 t 4861 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~-)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 A--AAUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- acg(uaac)a a---A-AUUA 2701 U-U|--U|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AUCUCUAGCU ---------- ---------- 2881 (-------aa au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(aag- 3181 ag-)------ C-AGUAAGCA CAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aauac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 A-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au aaa-u)---- ---------- ---------- AAG-AAuaua 4021 uacc------ ------ACGG --AAAUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-A--AA -U--CAAAG- -GUGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)G~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (21)-Ursid 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.A.mel.1 5213 bp RNA RNA 05-MAR-1997 DEFINITION Mitochondrion Ailuropoda melanoleuca.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION Y08521 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Ailuropoda melanoleuca. ORGANISM Mitochondrion Ailuropoda melanoleuca. REFERENCE 1 (bases 1 to 966) AUTHORS Ledje,C. TITLE Direct Submission JOURNAL Submitted (30-SEP-1996) C. Ledje, Division of Evolutionary Molecular Syst., Ints. of Genetics, Univ. of Lund, Solvegatan 29, S-223 62 Lund, SWEDEN STANDARD No information REFERENCE 2 (bases 1 to 966) AUTHORS Ledje,C. and Arnason,U. TITLE Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene JOURNAL J. Mol. Evol. 43 (6), 641-649 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y08521 BASE COUNT 342 a 210 c 178 g 236 t 4247 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|AGCCU-UC CUA-UUAGCC -A-UUAA-CA |AG-AU--UA -CAC-A-UGU 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCGCUCCAGU GAAAA---UG C|CCc-uuaa --gu-ccu-- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---cuua g----)---- 1261 ---------- ---------- -acg--acc- u-aAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACAC-- -----(cuua ug-------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--CAA C|GCCUU-GC --|------- (--uua-)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-UAUGAAC( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-GCUA-U- GU-uaauacu A--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-UCG-- 1981 AGUUA-AUAG G-------CC UACGGC|GUA AAGCGUGUaa -a-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------aaa aaucuccucu acuaaa--gu -----|UAAA GUAUGA-UUA ----AGCU(G 2341 UAAAA)AGCU AC-------C AUUA-AUACU AAA------- ----auaaac -uAC(-GAAA 2401 -)GU|g---- ----acuuua aaauu----- ---------- ucu-GAUUAC ACGAU-AGCU 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- UCUAAA-CAU 2521 A--GAUA-UU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- acu(aaac)a a---A-ACUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCCCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA G-ACCUCACC AUCCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU UUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(aaa- 3181 aa-)------ A-AGUAAGCA UAA-CUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ccuac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-G-CU-GG- ga-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- uuc--)---- ---------- ---------- AAG-AAcaac 4021 uucu------ ------ACGA --AAACU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-A--AG -C--UAAAG- -GCGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAG--GGCA 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gagug---- 4381 --aua-uaa- -uuuaauuau aaccuauuua aacuaagcaa ag-------- -cauaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUGA gc-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.mel.2 5213 bp RNA RNA 18-NOV-1993 DEFINITION Mitochondrion Ailuropoda melanoleuca.; 12S ribosomal RNA. ACCESSION L21887 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Ailuropoda melanoleuca. ORGANISM Mitochondrion Ailuropoda melanoleuca. REFERENCE 1 (bases 1 to 349) AUTHORS Zhang,Y.-P. and Ryder,O.A. TITLE Mitochondrial DNA sequence evolution in the Arctoidea JOURNAL Proc. Natl. Acad. Sci. U.S.A. 90, 9557-9561 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L21887 NCBI gi: 418037 BASE COUNT 130 a 71 c 60 g 88 t 4864 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~-)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 A--GAUA-UU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- acu(aaac)a a---A-ACUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCCCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA G-ACCUCACC AUCCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU UUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(aaa- 3181 aa-)------ A-AGUAAGCA UAA-CUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ccuac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-G-CU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- uuc--)---- ---------- ---------- AAG-AAcaac 4021 uucu------ ------ACGA --AAACU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-A--AG -C--UAAAG- -GCGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)G~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.E.ameri 5213 bp RNA RNA 18-NOV-1993 DEFINITION Mitochondrion Euarctos americanus.; 12S ribosomal RNA. ACCESSION L21891 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Euarctos americanus. ORGANISM Mitochondrion Euarctos americanus. REFERENCE 1 (bases 1 to 347) AUTHORS Zhang,Y.-P. and Ryder,O.A. TITLE Mitochondrial DNA sequence evolution in the Arctoidea JOURNAL Proc. Natl. Acad. Sci. U.S.A. 90, 9557-9561 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L21891 NCBI gi: 418000 BASE COUNT 129 a 74 c 62 g 82 t 4866 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~-)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 A--AGUA-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- auu(aaac)a a---A-AUUA 2701 U-U|--C|GC C-GGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAAA-CC CCCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA G-ACCUCACC ACCUCUUGCU ---------- ---------- 2881 (-------aa uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CU AAC-|CCU(U --AAA)AGG- -----(agu- 3181 aa-)------ A-AGUAAGCA CAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cccac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC CAU------- ---------G 3841 G-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- uuc--)---- ---------- ---------- AAG-AAcaac 4021 cu-------- ------ACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-A--AA -C--UAAAG- -GUGGAUUUA 4141 G-C--AGUAA A-CCAAGA(- auaga-ga-- --)G~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.H.malay 5213 bp RNA RNA 18-NOV-1993 DEFINITION Mitochondrion Helarctos malayanus.; 12S ribosomal RNA. ACCESSION L21882 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Helarctos malayanus. ORGANISM Mitochondrion Helarctos malayanus. REFERENCE 1 (bases 1 to 346) AUTHORS Zhang,Y.-P. and Ryder,O.A. TITLE Mitochondrial DNA sequence evolution in the Arctoidea JOURNAL Proc. Natl. Acad. Sci. U.S.A. 90, 9557-9561 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L21882 NCBI gi: 418011 BASE COUNT 128 a 72 c 62 g 84 t 4867 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~-)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 A--AAUA-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- auu(aaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAGA-CC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA G-ACCUCACC ACCUCUUGCU ---------- ---------- 2881 (-------aa uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(aac- 3181 aa-)------ G-AGUAAGCA CAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cccac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|AUC CAU------- ---------G 3841 G-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- uuc--)---- ---------- ---------- AAG-AAcacu 4021 u--------- ------ACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-A--AA -C--UAAAG- -GUGGAUUUA 4141 G-C--AGUAA A-CCAAGA(- auaga-ga-- --)G~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.ursin 5213 bp RNA RNA 18-NOV-1993 DEFINITION Mitochondrion Melursus ursinus.; 12S ribosomal RNA. ACCESSION L21884 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Melursus ursinus. ORGANISM Mitochondrion Melursus ursinus. REFERENCE 1 (bases 1 to 347) AUTHORS Zhang,Y.-P. and Ryder,O.A. TITLE Mitochondrial DNA sequence evolution in the Arctoidea JOURNAL Proc. Natl. Acad. Sci. U.S.A. 90, 9557-9561 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L21884 NCBI gi: 418025 BASE COUNT 127 a 71 c 64 g 85 t 4866 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~-)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 A--AAUA-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- guc(aaac)a a---G-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAAA-CC CCCCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA G-ACCUCACC ACCCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU UUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(aac- 3181 aa-)------ G-AGUAAGCA UAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cucgc- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC CAU------- ---------G 3841 G-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- uuu--)---- ---------- ---------- AAG-AAcacc 4021 uu-------- ------ACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-A--AA -C--UAAAG- -GUGGAUUUA 4141 G-U--AGUAA A-CCAAGA(- auaga-ga-- --)G~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.tibet 5213 bp RNA RNA 18-NOV-1993 DEFINITION Mitochondrion Selenarctos tibetanus.; 12S ribosomal RNA. ACCESSION L21890 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Selenarctos tibetanus. ORGANISM Mitochondrion Selenarctos tibetanus. REFERENCE 1 (bases 1 to 347) AUTHORS Zhang,Y.-P. and Ryder,O.A. TITLE Mitochondrial DNA sequence evolution in the Arctoidea JOURNAL Proc. Natl. Acad. Sci. U.S.A. 90, 9557-9561 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L21890 NCBI gi: 418045 BASE COUNT 130 a 73 c 63 g 81 t 4866 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~-)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 A--AAUA-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- auc(aaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AACG--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAAA-CC CCCCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA G-ACCUCACC ACCCCUUGCU ---------- ---------- 2881 (-------aa uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CG AAC-|CCU(U --AAA)AGG- -----(aaa- 3181 aa-)------ G-AGUAAGCA CAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cuugc- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC CAU------- ---------G 3841 G-G-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- uuc--)---- ---------- ---------- AAG-AAcaac 4021 cu-------- ------ACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-A--AA -C--UAAAG- -GUGGAUUUA 4141 G-U--AGUAA A-CCAAGA(- auaga-ga-- --)G~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.T.marit 5213 bp RNA RNA 18-NOV-1993 DEFINITION Mitochondrion Thalarctos maritimus.; 12S ribosomal RNA. ACCESSION L22164 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Thalarctos maritimus. ORGANISM Mitochondrion Thalarctos maritimus. REFERENCE 1 (bases 1 to 346) AUTHORS Zhang,Y.-P. and Ryder,O.A. TITLE Mitochondrial DNA sequence evolution in the Arctoidea JOURNAL Proc. Natl. Acad. Sci. U.S.A. 90, 9557-9561 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L22164 NCBI gi: 418048 BASE COUNT 132 a 72 c 59 g 83 t 4867 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~-)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 A--GAUA-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- acc(aaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AACC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAAA-CC CC-CUAGA|G GAGCCUGU-U |CUAUA--AC CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACCCCUUGCU ---------- ---------- 2881 (-------aa uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CG AAC-|CCU(U --AAA)AGG- -----(aaa- 3181 aa-)------ A-AGUUAGCA UAA-UUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cucac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-G-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- cuc--)---- ---------- ---------- AAG-AAcagu 4021 cu-------- ------ACGA --AAAUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-A--AA -C--UAAAG- -GUGGAUUUA 4141 G-U--AGUAA A-CUAAGA(- auaga-ga-- --)G~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.T.ornat 5213 bp RNA RNA 18-NOV-1993 DEFINITION Mitochondrion Tremarctos ornatus.; 12S ribosomal RNA. ACCESSION L21883 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Tremarctos ornatus. ORGANISM Mitochondrion Tremarctos ornatus. REFERENCE 1 (bases 1 to 346) AUTHORS Zhang,Y.-P. and Ryder,O.A. TITLE Mitochondrial DNA sequence evolution in the Arctoidea JOURNAL Proc. Natl. Acad. Sci. U.S.A. 90, 9557-9561 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L21883 NCBI gi: 418052 BASE COUNT 133 a 71 c 59 g 83 t 4867 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~-)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 A--GAUA-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- acc(aaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AAUC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAAA-CC CC-CUAGA|G GAGCCUGU-U |CUAUA--AC CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACCCCUUGCU ---------- ---------- 2881 (-------aa uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CG AAC-|CCU(U --AAA)AGG- -----(aaa- 3181 aa-)------ A-AGUAAGCA UAA-UUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cucac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-G-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- cuc--)---- ---------- ---------- AAG-AAuagu 4021 cu-------- ------ACGA --AAAUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-A--AA -C--UAAAG- -GCGGAUUUA 4141 G-U--AGUAA A-CUAAGA(- auaga-ga-- --)G~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.U.ameri 5213 bp RNA RNA 05-MAR-1997 DEFINITION Mitochondrion Ursus americanus.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION Y08520 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Ursus americanus. ORGANISM Mitochondrion Ursus americanus. REFERENCE 1 (bases 1 to 966) AUTHORS Ledje,C. TITLE Direct Submission JOURNAL 29, S-223 62 Lund, SWEDEN Submitted (30-SEP-1996) C. Ledje, Division of Evolutionary Molecular Syst., Ints. of Genetics, Univ. of Lund, Solvegatan STANDARD No information REFERENCE 2 (bases 1 to 966) AUTHORS Ledje,C. and Arnason,U. TITLE Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene JOURNAL J. Mol. Evol. 43 (6), 641-649 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y08520 BASE COUNT 333 a 219 c 188 g 226 t 4247 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UC CUA-UUAGCU -G-CUAA-CA |AG-AU--UA -CAC-A-UGU 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GAAAA---UG C|CCU-Uugg --au-cuu-- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----aaa -----)---- 1261 ---------- ---------- -gcg--guu- c-gAAGGAGC |--------- gGGCAUCA-- 1321 -AGCACAC-- -----(cucu ccccg----- ---------- ---------- ------)--- 1381 ---GU|---A GCUUA--UAA C|GCCUU-GC --|------- (--uua-)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-UAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCUA-U- GU-ugaucaa a--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -UAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAUU|--- -GAC-CCA-- 1981 AGUUA-AUAG G-------CC CACGGC|GUA AAGCGUGUga -a-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------aaaa uuuuuucccc acuaaa--gu -----|UAAA GUUUAA-CCA ----AGCU(G 2341 UAAAA)AGCU AU-------C GGUA-ACACU AAA------- ----auaaac -uAC(-GAAA 2401 -)GU|g---- ----acuuua auac------ ---------- ucucaaccAC ACGAC-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CAU 2521 A--AGUA-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- auu(aaac)a a---A-AUUA 2701 U-U|--C|GC C-GGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAAA-CC CCCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA G-ACCUCACC ACCUCUUGCU ---------- ---------- 2881 (-------aa uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CU AAC-|CCU(U --AAA)AGG- -----(agu- 3181 aa-)------ A-AGUAAGCA CAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cccac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC CAU------- ---------G 3841 G-G-GU-GG- ga-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- uuc--)---- ---------- ---------- AAG-AAcaac 4021 cu-------- ------ACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-A--AA -C--UAAAG- -GUGGAUUUA 4141 G-C--AGUAA A-CCAAGA(- auaga-ga-- --)GCUUGGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -uag--ggcA 4261 AUGGAG-CA- UGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagug---- 4381 --gca-caa- -gucaaauau aaccuauuga aauuaaauaa aa-------- -cgcaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA ac-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.U.arc.1 5213 bp RNA RNA 05-MAR-1997 DEFINITION Mitochondrion Ursus arctos.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION Y08519 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Ursus arctos. ORGANISM Mitochondrion Ursus arctos. REFERENCE 1 (bases 1 to 963) AUTHORS Ledje,C. TITLE Direct Submission JOURNAL Submitted (30-SEP-1996) C. Ledje, Division of Evolutionary Molecular Syst., Ints. of Genetics, Univ. of Lund, Solvegatan 29, S-223 62 Lund, SWEDEN STANDARD No information REFERENCE 2 (bases 1 to 963) AUTHORS Ledje,C. and Arnason,U. TITLE Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene JOURNAL J. Mol. Evol. 43 (6), 641-649 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y08519 BASE COUNT 331 a 221 c 189 g 222 t 4250 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|AGCCU-UC CCA-UUAGCU -A-CUAA-CA |AG-AU--UA -CAC-A-UGU 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCUCCAGU GAAAA---UG C|CCU-uugg --ac-cuu-- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----aaa -----)---- 1261 ---------- ---------- -gcg--auc- u-gAAGGAGC |--------- gGGCAUCA-- 1321 -AGCACAC-- -----(cucu ccccg----- ---------- ---------- ------)--- 1381 ---GU|---A GCUUA--UAA C|GCCUU-GC --|------- (--uua-)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-GCUA-C- GU-UGAUUAA ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -UAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAUU|--- -GAC-CCG-- 1981 AGUUA-AUAG G-------CC CACGGC|GUA AAGCGUGUga -a-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------ga aauucucccu acuaaa--gu -----|UAAA GUUUAA-UCC ----AGCU(G 2341 UAAAA)AGCU AU-------C AGUA-ACACU AAA------- ----auaagc -uAC(-GAAA 2401 -)GU|g---- ----acuuua augc------ ---------- ucucaaccAC ACGAC-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CAU 2521 A--AAUA-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- auu(aaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAAA-CC CCCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA G-ACCUCACC ACCUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(aac- 3181 aa-)------ G-AGUAAGCA CAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cuugc- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC CAU------- ---------G 3841 G-G-GU-GG- ga-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- uuc--)---- ---------- ---------- AAG-AAcaac 4021 uu-------- ------ACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-A--AA -C--UAAAG- -GUGGAUUUA 4141 G-U--AGUAA A-UCAAGA(- auaga-ga-- --)GCUUGGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -uaa--ggca 4261 AUGAAG-CA- UGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagug---- 4381 --gca-caa- -gccaaacac aaccuauuga aaccaaauaa aa-------- -cgcaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGG-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGACGG au-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.U.arc.2 5213 bp RNA RNA 18-NOV-1993 DEFINITION Mitochondrion Ursus arctos.; 12S ribosomal RNA. ACCESSION L21889 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Ursus arctos. ORGANISM Mitochondrion Ursus arctos. REFERENCE 1 (bases 1 to 347) AUTHORS Zhang,Y.-P. and Ryder,O.A. TITLE Mitochondrial DNA sequence evolution in the Arctoidea JOURNAL Proc. Natl. Acad. Sci. U.S.A. 90, 9557-9561 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L21889 NCBI gi: 418058 BASE COUNT 132 a 69 c 60 g 86 t 4866 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~-)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 A--AAUA-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- auu(aaac)a a---A-AUUA 2701 U-U|--C|AC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAAA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA G-ACCUCACC ACCUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(aac- 3181 aa-)------ G-AGUAAGCA CAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cuugc- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC CAU------- ---------G 3841 G-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- uuc--)---- ---------- ---------- AAG-AAcaac 4021 uu-------- ------ACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-A--AA -C--UAAAG- -GUGGAUUUA 4141 G-U--AGUAA A-UCAAGA(- auaga-ga-- --)G~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (20)-Pinni 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.S.forst 5213 bp RNA RNA 05-MAR-1997 DEFINITION Mitochondrion Arctocephalus forsteri.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION Y08527 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Arctocephalus forsteri. ORGANISM Mitochondrion Arctocephalus forsteri. REFERENCE 1 (bases 1 to 960) AUTHORS Ledje,C. TITLE Direct Submission JOURNAL Submitted (30-SEP-1996) C. Ledje, Division of Evolutionary Molecular Syst., Ints. of Genetics, Univ. of Lund, Solvegatan 29, S-223 62 Lund, SWEDEN STANDARD No information REFERENCE 2 (bases 1 to 960) AUTHORS Ledje,C. and Arnason,U. TITLE Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene JOURNAL J. Mol. Evol. 43 (6), 641-649 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y08527 BASE COUNT 353 a 230 c 165 g 212 t 4253 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCC-UU CCG-UUAGUU -U-UUAA-UA |AA-AU--UA -UAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCGCCCCAGU GAGAA---UG C|CCU-Ucag --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-cccaua acc--)---- 1261 ---------- ---------- ---g--auc- a-aAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACACU- -----(caac g--------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--CGA C|GCCUU-GC --|------- (-uca--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACa----C-A 1501 GCA|GUA-AU AAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AU-UAAuuaa a--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-ACGG G-------cc caCGGC|GUA AAGCGUGUA- -aaaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -uuuaucaac acuaaa--gu -----|UAAA auUUAA-CCA ----AGCC(G 2341 UAAAA)AGCU AC-------C GUUA-AuacA AAA------- -----uauac -uAC(-GAAA 2401 -)GU|g---- ----acuuua cuac------ -u-------- ucu-gauuAC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 A--AAUA-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- acu(uaac)a a---A-AUUA 2701 U-C|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-CC CCCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACCUCUUGCU ---------- ---------- 2881 (-------aa uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC CU-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(aaa- 3181 ga-)------ A-AGUAAGCA CAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacac- 3781 ---------G UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC CAU------- ---------G 3841 A-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- aac--)---- ---------- ---------- AAG-AAcaca 4021 ccau------ ------ACGA --AAGUU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-AA-U--AA -C--UAAAG- -GUGGAUUUA 4141 G-U--AGUAA A-CUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUG--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaauaauc- 4381 acccc-aaa- ----acaaua cauaa-au-- ---------- uaacauaaaa ucaua-a--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.gazel 5213 bp RNA RNA 05-MAR-1997 DEFINITION Mitochondrion Arctocephalus gazella.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION Y08526 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Arctocephalus gazella. ORGANISM Mitochondrion Arctocephalus gazella. REFERENCE 1 (bases 1 to 961) AUTHORS Ledje,C. TITLE Direct Submission JOURNAL Molecular Syst., Ints. of Genetics, Univ. of Lund, Solvegatan 29, S-223 62 Lund, SWEDEN Submitted (30-SEP-1996) C. Ledje, Division of Evolutionary STANDARD No information REFERENCE 2 (bases 1 to 961) AUTHORS Ledje,C. and Arnason,U. TITLE Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene JOURNAL J. Mol. Evol. 43 (6), 641-649 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y08526 BASE COUNT 352 a 229 c 167 g 213 t 4252 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCC-UU CCG-UUAGUU -U-UUAA-UA |AA-AU--UA -UAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCGCCCCAGU GAGAA---UG C|CCU-Ucag --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-cuuaua acc--)---- 1261 ---------- ---------- ---g--auc- a-aAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACACU- -----(caac g--------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--CAA C|GCCUU-GC --|------- (-uca--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACa----C-A 1501 GCA|GUA-AU AAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AU-UAAuuag a--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -GAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-ACGG G-------cc caCGGC|GUA AAGCGUGUA- -aaaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -uuuauaaau acuaaa--gu -----|UAAA auUUAA-CCA ----AGCC(G 2341 UAAAA)AGCU AC-------C GUUA-AuacA AAA------- -----uauac -uAC(-GAAA 2401 -)GU|g---- ----acuuua cuac------ -u-------- ucu-gauuAC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 A--AAUA-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- acu(uaac)a a---A-AUUA 2701 U-C|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-CC CCCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACCUCUUGCU ---------- ---------- 2881 (-------aa uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC CU-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(aaa- 3181 ga-)------ G-AGUAAGCA CAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cgcac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC CAU------- ---------G 3841 A-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- aac--)---- ---------- ---------- AAG-AAcaca 4021 ccau------ ------ACGA --AAGUU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-U--AA -C--UAAAG- -GUGGAUUUA 4141 G-U--AGUAA A-CUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUG--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaauaa--- 4381 ucacc-cua- -aaacacaua cauaa-au-- ---------- caacacaaaa ucau-aa--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.Z.calif 5213 bp RNA RNA 05-MAR-1997 DEFINITION Mitochondrion Zalophus californianus.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION Y08525 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Zalophus californianus. ORGANISM Mitochondrion Zalophus californianus. REFERENCE 1 (bases 1 to 962) AUTHORS Ledje,C. TITLE Direct Submission JOURNAL Submitted (30-SEP-1996) C. Ledje, Division of Evolutionary Molecular Syst., Ints. of Genetics, Univ. of Lund, Solvegatan 29, S-223 62 Lund, SWEDEN STANDARD No information REFERENCE 2 (bases 1 to 962) AUTHORS Ledje,C. and Arnason,U. TITLE Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene JOURNAL J. Mol. Evol. 43 (6), 641-649 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y08525 BASE COUNT 353 a 226 c 168 g 215 t 4251 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCC-UU CCG-UUAGUU -U-UUAA-UA |AA-AU--UA -UAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCGCCCCAGU GAGAA---UG C|CCU-Ucag --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-ccuaca gcc--)---- 1261 ---------- ---------- ---g--auc- a-aAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACACU- -----(caac g--------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--CAA C|GCCUU-GC --|------- (-uca--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACa----C-A 1501 GCA|GUA-AU AAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-GUUA-U- AU-UAAucau aa-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-ACGG G-------cu caCGGC|GUA AAGCGUGUA- -aaaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -ucuaccuac acuaaa--gu -----|UAAA auUUAA-CCA ----AGCC(G 2341 UAAAA)AGCU GC-------C GUUA-AuacA AAA------- -----uauac -uAC(-GAAA 2401 -)GU|g---- ----acuuua auaa------ -u-------- ucu-gauuAC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 A--AAUA-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- acu(uaac)a a---A-AUUA 2701 U-C|--C|GC C-AGAG-AAC UACUAGC(-- -AAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-UC CCCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACCUCUUGCU ---------- ---------- 2881 (-------aa uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC CU-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(aaa- 3181 ga-)------ A-AGUAAGCA UAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cgcac- 3781 ---------G UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC CAU------- ---------G 3841 A-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- aac--)---- ---------- ---------- AAG-AAcaca 4021 ccgu------ ------ACGA --AAGUU-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-U--AA -C--UAAAG- -GUGGAUUUA 4141 G-U--AGUAA A-CUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUG--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaauaaua- 4381 accuc-aaa- ---gcacaua cauaa-au-- ---------- caauauaaaa ccaua-a--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.H.grypu 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Halichoerus grypus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Halichoerus grypus. ORGANISM Mitochondrion Halichoerus grypus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X72004 DEFINITION H.grypus mitochondrial sequence, complete genome SOURCE grey seal ORGANISM Mitochondrion Halichoerus grypus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Carnivora; Caniformia; Musteloidea; Phocidae. REFERENCE 2 (bases 1 to 16797) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (18-MAY-1993) U. Arnason, University of Lund, Dept of Genetics, Division of Molecular Genetics, The Wallenberg Laboratory, Box 7031, 220 07 Lund, SWEDEN REFERENCE 3 (bases 1 to 16797) AUTHORS Anderson,U., Gullberg,A., Johnsson,E. and Ledje,C. TITLE The nucleotide sequence of the mitochondrial DNA molecule of the grey seal Halichoerus grypus and a comparison with mitochondrial sequences of other true seals JOURNAL J. Mol. Evol. 37, 312-322 (1993) FEATURES Location/Qualifiers source 1..16797 /organism="Halichoerus grypus" /mitochondrion tRNA 906..975 /product="tRNA-Phe" rRNA 976..1935 /product="12S rRNA" tRNA 1936..2008 /product="tRNA-Val" rRNA 2009..3577 /product="16S rRNA" tRNA 3578..3651 /product="tRNA-Leu(UUR)" tRNA 4610..4678 /product="tRNA-Ile" tRNA complement(4676..4763) /product="tRNA-Gln" tRNA 4764..4818 /product="tRNA-Met" tRNA 5861..5928 /product="tRNA-Trp" tRNA complement(5939..6007) /product="tRNA-Ala" tRNA complement(6009..6081) /product="tRNA-Asn" rep_origin 6082..6117 /note="origin of L-strand replication" tRNA complement(6114..6179) /product="tRNA-Cys" tRNA complement(6180..6247) /product="tRNA-Tyr" tRNA complement(7791..7861) /product="tRNA-Ser(UCN)" tRNA 7866..7932 /product="tRNA-Asp" tRNA 10312..10379 /product="tRNA-Gly" tRNA 10727..10795 /product="tRNA-Arg" tRNA 12464..12532 /product="tRNA-His" tRNA 12533..12591 /product="tRNA=Ser(AGY)" tRNA 12592..12652 /product="tRNA-Leu(CUN)" tRNA complement(14994..15062) /product="tRNA-Glu" tRNA complement(16277..16342) /product="tRNA-Thr" misc_feature join(16343..16797,1..905) /note="control region" tRNA 16342..16277 /product="tRNA-Pro" CDS 3654..4610 /gene="NADH1" /product="NADH-ubiquinone oxidoreductase subunit 1" /codon_start=1 /translation="MFMINIISLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYG LLQPIADAVKLFTKEPLRPLTSSTTMFIMAPILALTLALTMWVPLPMPYPLINMNLGV LFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF TLSTLIITQEHLWLIFPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAG PFAMFFLAEYANIIMMNIFTTLLFFGAFHNPYMPELYVVNFTVKTLALTILFLWIRAS YPRFRYDQLMHLLWKNFLPLTLALCMWHVTLPIISASIPPQT" CDS 4819..5862 /gene="NADH2" /product="NADH-ubiquinone oxidoreductase subunit 2" /codon_start=1 /translation="MKPPILIIIMSTVMSGTMIVLTSSHWLLIWIGFEMNMLAIIPIL MKNHTPRATEASTKYFLTQATASMLLMMGIIINLMFSGEWSISKIPNPIASGLVTIAL TMKLGMAPFHFWVPEVTQGISLSSGMILLTWQKIAPLSILYQISPSINPKLLITMAIA SVLIGGWGGLNQTQLRKILAYSSIAHMGWMAVILTYNPTLMILNLTIYITMTLSTFML FMHNSSTTTLSLSNTWNKLPLMTSLILVLMMSLGGLPPLSGFAPKWMIIQELTKNDMI ILPTFMAITALLNLYFYMRLSYTTALTMFPSVNNMKMKWQFESAKKIILLPPLIIIST MLLPMTPMMSILE" CDS 6249..7793 /gene="COI" /product="cytochrome oxidase subunit I" /codon_start=1 /translation="MFMDRWLFSTNHKDIGTLYLLFGAWAGMAGTALSLLIRAELGQP GALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSF WLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILG AINFITTIINMKPPAMSQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTT FFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWA MMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKW SPAMLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGG FVHWFPLFSGYTLDNTWAKIHFTIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDAYTTW NTVSSMGSFISLTAVMLMVFMIWEAFASKREVAAVELTTTNIEWLHGCPPPYHTFEEP TYVVLK" CDS 7933..8616 /gene="COII" /product="cytochrome oxidase subunit II" /codon_start=1 /translation="MAYPLQMGLQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISL MLTTKLTHTSTMDAQEVETVWTILPAIILILIALPSLRILYMMDEINNPSLTVKTMGH QWYWSYEYTDYEDLNFDSYMIPTQELKPGELRLLEVDNRVVLPMEMTIRMLISSEDVL HSWAVPSLGLKTDAIPGRLNQTTLMAMRPGLYYGQCSEICGSNHSFMPIVLELVPLSH FEKWSTSML" CDS 8688..8891 /gene="ATPase8" /product="ATP synthase subunit 8" /codon_start=1 /translation="MPQLDTSTWLIMISSMILTLFITFHLKVSKHYFPTNPEPKHTLL LKNSAPWEEKWTKIYSPLSLPLQ" CDS 8849..9529 /gene="ATPase6" /product="ATP synthase subunit 6" /codon_start=1 /translation="MNENLFASFTTPTMMGLPIVILIVLFPSILFPSPDRLINNRLTS IQQWLIQLTSKQMLSIHNHKGQTWALMLISLILFIGSTNLLGLLPHSFTPTTQLSMNL GMAIPLWAGTVITGFRHKTKASLAHFLPQGTPLPLIPMLVIIETISLFIQPMALAVRL TANITAGHLLIHLIGGATLALMDISTTTAFITFIVLILLTILEFAVALIQAYVFTLLV SLYLHDNT" CDS 9529..10311 /partial /gene="COIII" /note="no stop codon" /product="cytochrome oxidase subunit III" /codon_start=1 /translation="MTHQTHAYHMVNPSPWPLTGALSALLMTSGLIMWFHFNSMYLLM LGLTTNTLTMYQWWRDIVRESTFQGHHTPIVQKGLRYGMILFIVSEVFFFAGFFWAFY HSSLAPTPELGGCWPPTGITPLNPMEVPLLNTSVLLASGVSITWAHHSLMEGNRKHML QALFITISLGVYFTLLQASEYYETPFTISDGIYGSTFFMATGFHGLHVIIGSTFLIVC FMRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS" CDS 10380..10724 /partial /gene="NADH3" /note="no stop codon" /product="NADH-ubiquinone oxidoreductase subunit 3" /codon_start=1 /translation="MNMALTLFTNTALASLLVLIAFWLPQLNTYSEKVSPYECGFDPM GSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASHTDNLTTMLTMALLLISLLAASL AYEWTEKGLEWTE" CDS 10796..11092 /gene="NADH4L" /product="NADH-ubiquinone oxidoreductase subunit 4L" /codon_start=1 /translation="MSMVYANIFLAFIMSLMGLLMYRSHLMSSLLCLEGMMLSLFVMM TVTILNNHFTLASMAPIILLVFAACEAALGLSLLVMVSNTYGTDYVQNLNLLQC" CDS 11086..12462 /partial /gene="NADH4" /note="no stop codon" /product="NADH-ubiquinone oxidoreductase subunit 4" /codon_start=1 /translation="MLKIIIPTMMLMPLTWMSKPNMIWINTTAYSLLISLISLSFLNQ LGDNCMSLSLLFFTDSLSAPLLALTTWLLPLMLMASQFHLSKEPLARKKLYITMLILL QLFLIMTFTATELIMFYILFEATLVPTLIIITRWGNQTERLNAGTYFLFYTLVGSLPL LVALLFIQNNMGTLNFLMIQLWAQPLPSSWSNTLLWLACMMAFMVKMPLYGLHLWLPK AHVEAPIAGSMVLAAVLLKLGGYGMMRITALLSPLTSFMAYPFMMLSLWGMTMTSSIC LRQTDLKSLIAYSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSVLFCLANSNY ERTHSRTMILARGLQVLLPLMAAWWLLASLTNLALPPTINLIGELFVVMASFSWSNIT IILMGTNIIITALYSLYMLITTQRGKYTYHIKNIKPSFTRENALMTLHLMPLLLLSLN PKVILGPIY" CDS 12653..14482 /gene="NADH5" /product="NADH-ubiquinone oxidoreductase subunit 5" /codon_start=1 /translation="MKVINLFASSIITTLSMLTLPIVLTSTSIYKNKLYPQYVKTAIS YAFMISMIPTTMFIYSGQEMIISNWHWMTIQTMKLTLSFKLDHFSMIFVPVALFVTWS IMEFSMWYMHSDPFINRFFKYLLMFLITMMILVTANNLFQLFIGWEGVGIMSFLLIGW WHGRTDANTAALQAVLYNRIGDVGFIMAMAWFLINLNTWELQQIFISHHNNLNVPLMG LLLAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRFHPLMEHNTMM QTTTLCLGAITTLFTAICALTQNDIKKIIAFSTSSQLGLMIVTIGINQPHLAFLHICT HAFFKAMLFLCSGSIIHNLNDEQDIRKMGGLYKVLPFTTTSLIVGSLALTGMPFLTGF YSKDLIIETANTSYTNAWALLLTLVATSMTAAYSTRIMFFALLDQPRFNPMITINENS PLLINPIKRLLLGSIFAGYLISYNITPTSTPQMTMPHYLKLMALTVTLLGFILALELN LTSQSLKLKHPSNLFKFSNLLGYFPTIIHRYMPMVNLSASQKLASTLLDAIWLENALP KSISYFHMKSSVTISNQKGLIKLYFLSFIITLILALMMINSHE" CDS complement(14466..14993) /gene="NADH6" /product="NADH-ubiquinone oxidoreductase subunit 6" /codon_start=1 /translation="MMTYIVFILSIIFVISFVGFSSKPSPIYGGLVLIISGAVGCGIV LSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWVSNKAVLGAFVMGLLSELL LACYILKDDEVDAVFEFNGMGDWVIYDTGDSGFFSEEAMGIAALYSYGTWLVIVTGWS LFIGVLVIMEVTRGN" CDS 15067..16206 /product="cytochrome b" /codon_start=1 /translation="MTNIRKTHPLMKIINNSFIDLPTPSNISAWWNFGSLLGICLILQ ILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYLHANGASMFFICLYMHVGRGL YYGSYTFTETWNIGIILLFTIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDL VQWIWGGFSVDKATLTGFFAFHFILPFVVLALAAVHLLFLHETGSNNPSGIMPDSDKI PFHPYYTIKDILGALLLILVLTLLVLFSPDLLGDPDNYIPANPLSTPPHIKPEWYFLF AYAILRSIPNKLGGVLALVLSILILAIVPLLHTSKQRGMMFRPISQCLFWLLVADLLT LTWIGGQPVEHPYITIGQLASILYFMILLVLMPIASIIENNILKWS" BASE COUNT 355 a 232 c 168 g 205 t 4253 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UC CUA-UUAGUU -U-UUAA-UA |AG-AU--UA -UAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCGGU GAAAA---UG C|CCU--caa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-ccaaca acc--)---- 1261 ---------- ---------- ---g--auc- a-aAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACACU- -----(aaac a--------- ---------- ---------- ------)--- 1381 --AGU|---A GCUUA--CAA C|GCCUU-GC --|------- (-uca--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUa----C-A 1501 GCA|GUA-AU AAAAAUUAAG C-UAUGAAC( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-GCUA-U- AU-UAAaccu cca------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCUACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUAG G-------cc cuCGGC|GUA AAGCGUGUU- -aaaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -ucaacccac acuaaa--gc -----|UAAA acCUAA-CCA ----AGCC(G 2341 UAAAA)AGCU AC-------C GUUA-AcauA AAA------- -----uaaac -uAC(-GAAA 2401 -)GU|g---- ----acuuua cuaa------ -c-------- ucu-gacaGC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 A--AAUA-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- acg(uaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-CC CCUCUAGA|G GAGCCUGU-U |CUGUA--AC CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUCCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(aac- 3181 aa-)------ A-AGUAAGCA CAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cgcuac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- aau--)---- ---------- ---------- AAG-AAcaac 4021 uau------- ------ACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AACA--AA -C--UAAAG- -GUGGAUUUA 4141 G-U--AGUAA G-CUAAGA(- auaga-ga-- --)GCUUAGC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCG--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaauaaac- 4381 acuac-aag- -------cua cauaaaac-- ---------- caacacaa-a acauaua--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGGUAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.L.wedde 5213 bp RNA RNA 05-MAR-1997 DEFINITION Mitochondrion Leptonychotes weddelli.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION Y08522 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Leptonychotes weddelli. ORGANISM Mitochondrion Leptonychotes weddelli. REFERENCE 1 (bases 1 to 964) AUTHORS Ledje,C. TITLE Direct Submission JOURNAL 29, S-223 62 Lund, SWEDEN Submitted (30-SEP-1996) C. Ledje, Division of Evolutionary Molecular Syst., Ints. of Genetics, Univ. of Lund, Solvegatan STANDARD No information REFERENCE 2 (bases 1 to 964) AUTHORS Ledje,C. and Arnason,U. TITLE Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene JOURNAL J. Mol. Evol. 43 (6), 641-649 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y08522 BASE COUNT 368 a 222 c 159 g 215 t 4249 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCC-UC CUA-UUGGUU -U-CUAA-UA |AG-AU--UA -UAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCGGU GAAAG---UG C|CCU-Cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(ucauaca acu--)---- 1261 ---------- ---------- ---g--auu- a-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACACU- -----(aaac a--------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--CAA C|GCCUU-GC --|------- (-uca--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUa----C-A 1501 GCA|GUA-AU AAAAAUUAAG C-UAUGAAC( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-GCUA-U- AU-UAAacau uca------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUCA-AUAG G-------uc cuCGGC|GUA AAAAGUGUc- -aaaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- uuuaauuaac acuaaa--gu -----|UAAA aaCUAA-CCA ----AGCU(G 2341 UAAAA)AGCU AC-------C GUUA-AuauA AAA------- -----uaaac -uAC(-GAAA 2401 -)GU|g---- ----acuuua ccaa------ -c-------- ucc-gacuAC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAC 2521 A--AAUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aua(uaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-CC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(aau- 3181 aa-)------ A-AGUAAGCA UAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cacuac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-A-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- aac--)---- ---------- ---------- AAG-AAcaac 4021 cauac----- ------ACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AACA--AA -C--UAAAG- -GUGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UCG--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaauaaac- 4381 acucu-aaa- -------uua aauaaaac-- ---------- auacacaa-a acaca-a--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.leoni 5213 bp RNA RNA 05-MAR-1997 DEFINITION Mitochondrion Mirounga leonina.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION Y08523 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Mirounga leonina. ORGANISM Mitochondrion Mirounga leonina. REFERENCE 1 (bases 1 to 966) AUTHORS Ledje,C. TITLE Direct Submission JOURNAL 29, S-223 62 Lund, SWEDEN Submitted (30-SEP-1996) C. Ledje, Division of Evolutionary Molecular Syst., Ints. of Genetics, Univ. of Lund, Solvegatan STANDARD No information REFERENCE 2 (bases 1 to 966) AUTHORS Ledje,C. and Arnason,U. TITLE Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene JOURNAL J. Mol. Evol. 43 (6), 641-649 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y08523 BASE COUNT 366 a 224 c 161 g 215 t 4247 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|AGCCC-UC CUA-UUGAUU -C-UUAA-UA |AG-AU--UA -UAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUCCCGGU GAAAA---UG C|CCU-Cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(ucacaua acu--)---- 1261 ---------- ---------- ---g--agu- a-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACACU- -----(aaac a--------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--UAA C|ACCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACa----C-A 1501 GCA|GUA-AU AAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-GCUA-U- AU-UAAauac cca------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUCA-AUAG G-------uc cuCGGC|GUA AAGCGUGUU- -aaaaa---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- cuuaauuuac acuaaa--gu -----|UAAA aaCUAA-CCA ----AGCC(G 2341 UAAAA)AGCU AC-------C GUUA-GcauA AAA------- -----uaaac -uAC(-GAAA 2401 -)GU|g---- ----acuuua cuaa------ -c-------- ucu-gauuAC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 A--AAUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- acg(caac)a a---A-ACUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-CC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(aau- 3181 ag-)------ A-AGUAAGCA CAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---uaccac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC CAU------- ---------G 3841 G-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- aau--)---- ---------- ---------- AAG-AAcaau 4021 aacac----- ------ACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AACA--AA -C--UAAAG- -GUGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCG--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaauauau- 4381 ucucc-aaa- -------cua aauaaaac-- ---------- agacacaaaa acacaua--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.schau 5213 bp RNA RNA 05-MAR-1997 DEFINITION Mitochondrion Monachus schauinslandi.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION Y08524 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Monachus schauinslandi. ORGANISM Mitochondrion Monachus schauinslandi. REFERENCE 1 (bases 1 to 963) AUTHORS Ledje,C. TITLE Direct Submission JOURNAL 29, S-223 62 Lund, SWEDEN Submitted (30-SEP-1996) C. Ledje, Division of Evolutionary Molecular Syst., Ints. of Genetics, Univ. of Lund, Solvegatan STANDARD No information REFERENCE 2 (bases 1 to 963) AUTHORS Ledje,C. and Arnason,U. TITLE Phylogenetic relationships within caniform carnivores based on analyses of the mitochondrial 12S rRNA gene JOURNAL J. Mol. Evol. 43 (6), 641-649 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y08524 BASE COUNT 366 a 223 c 156 g 218 t 4250 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|AGCCC-UC CUA-UUAGUU -C-CUAA-UA |AG-AU--UA -UAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCAUCCCGGU GAAAA---UG C|CCU-Cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(ucauaua acu--)---- 1261 ---------- ---------- ---g--auu- a-aAAGGAGC |--------- uGGUAUCA-- 1321 -AGCACACU- -----(aaac a--------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--UAA C|GCCUU-GC --|------- (-uca--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUa----C-A 1501 GCA|GUA-AU AAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-GCUA-U- AU-UAAccau uca------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAG G-------uc ccCGGC|GUA AAACGUGUC- -aaaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- cuucacucac acuaaa--gu -----|UAAA aaCUAA-CCA ----AGCU(G 2341 UAAAA)AGCU AC-------C GUUA-AcauA AAA------- -----uaaac -uAC(-GAAA 2401 -)GU|g---- ----acuuua uuaa------ -c-------- ucc-gacuAC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 A--AAUA-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- acg(uaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-CC CCCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUCUUGCU ---------- ---------- 2881 (-------aa uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UC-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(aau- 3181 aa-)------ A-AGUAAGCA UAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cauuac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- aaa--)---- ---------- ---------- AAG-AAcaac 4021 caau------ ------ACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AACA--AA -C--UAAAG- -GUGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UCG--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gaauaaac- 4381 acccc-aaa- -------uua aauaaaac-- ---------- auacacaa-a auaua-a--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGACAA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.vitul 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Phoca vitulina. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Phoca vitulina. ORGANISM Mitochondrion Phoca vitulina. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X63726 ID MIPVDNA standard; DNA; ORG; 16826 BP. XX AC X63726; XX DT 19-JUN-1992 (Rel. 32, Created) DT 19-JUN-1992 (Rel. 32, Last updated, Version 2) XX DE P.vitulina mitochondrial DNA, complete genome XX KW 16S ribosomal RNA; cytochrome b; cytochrome C oxidase subunit I; KW cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; KW NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; KW NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; KW NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; KW NADH dehydrogenase subunit 6; origin of replication; ribosomal RNA; KW transfer RNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; KW transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; KW transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; KW transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; KW transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; KW transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; KW transfer RNA-Tyr; transfer RNA-Val. XX OS Phoca vitulina OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; OC Theria; Eutheria; Carnivora; Caniformia; Musteloidea; Phocidae. XX OG Mitochondrion XX RN [1] RA Arnason U., Johnsson E.; RT "The complete mitochondrial DNA sequence of the Harbor seal, phoca RT vitulina"; RL J. Mol. Evol. 34:493-505(1992). XX RN [2] RP 1-16826 RA Arnason U.; RT ; RL Submitted (17-FEB-1992) on tape to the EMBL Data Library by: RL U. Arnason, Dept of Mol Genetics, Univ of Lund, Box 7031, S-220 07 RL Lund, SWEDEN XX FH Key Location/Qualifiers FH FT tRNA 935..1004 FT /gene="tRNA-Phe" FT rRNA 1005..1965 FT /gene="12S rRNA" FT tRNA 1966..2038 FT /gene="tRNA-Val" FT rRNA 2039..3603 FT /gene="16S rRNA" FT tRNA 3604..3677 FT /gene="tRNA-Leu" /note="anticodon UUR" FT CDS 3680..4636 FT /product="NADH dehydrogenase subunit 1" FT tRNA 4636..4704 FT /gene="tRNA-Ile" FT tRNA complement(4702..4789) FT /gene="tRNA-Gln" FT tRNA 4790..4844 FT /gene="tRNA-Met" FT CDS 4845..5888 FT /product="NADH dehydrogenase subunit 2" FT tRNA 5887..5953 FT /gene="tRNA-Trp" FT tRNA complement(5964..6032) FT /gene="tRNA-Ala" FT tRNA complement(6034..6106) FT /gene="tRNA-Asn" FT rep_origin 6107..6142 FT /note="origin L-strand replication" FT tRNA complement(6139..6205) FT /gene="tRNA-Cys" FT tRNA complement(6206..6273) FT /gene="tRNA-Tyr" FT CDS 6275..7819 FT /product="cytochrome c oxidase subunit I" FT tRNA complement(7817..7887) FT /gene="tRNA-Ser" /note="anticodon UCN" FT tRNA 7892..7958 FT /gene="tRNA-Asp" FT CDS 7959..8642 FT /product="cytochrome c oxidase subunit II" FT tRNA 8644..8712 FT /gene="tRNA-Lys" FT CDS 8714..8917 FT /product="ATPase subunit 8" FT CDS 8875..9555 FT /product="ATPase subunit 6" FT CDS 9555..10337 FT /product="cytochrome oxidase subunit III" FT /note="no stop codon" FT tRNA 10339..10406 FT /gene="tRNA-Gly" FT CDS 10407..10751 FT /product="NADH dehydrogenase subunit 3" FT tRNA 10754..10822 FT /gene="tRNA-Arg" FT CDS 10823..11119 FT /product="NADH dehydrogenase subunit 4L" FT CDS 11113..12489 FT /product="NADH dehydrogenase subunit 4L" FT tRNA 12491..12559 FT /gene="tRNA-His" FT tRNA 12560..12618 FT /gene="tRNA-Ser" /note="anticodon AGY" FT tRNA 12619..12679 FT /gene="tRNA-Leu" /note="anticodon CUN" FT CDS 12680..14509 FT /product="NADH dehydrogenase subunit 5" FT CDS complement(14493..15020) FT /product="NADH dehydrogenase subunit 6" FT tRNA complement(15021..15089) FT /gene="tRNA-Glu" FT CDS 15094..16233 FT /product="cytochrome b" FT tRNA 16234..16302 FT /gene="tRNA-Thr" FT tRNA complement(16304..16369) FT /gene="tRNA-Pro" XX SQ Sequence 16826 BP; 5550 A; 4616 C; 2403 G; 4257 T; 0 other; ID MIPVDNA standard; DNA; ORG; 16826 BP. XX AC X63726; XX DT 19-JUN-1992 (Rel. 32, Created) DT 19-JUN-1992 (Rel. 32, Last updated, Version 2) XX DE P.vitulina mitochondrial DNA, complete genome XX KW 16S ribosomal RNA; cytochrome b; cytochrome C oxidase subunit I; KW cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; KW NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; KW NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; KW NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; KW NADH dehydrogenase subunit 6; origin of replication; ribosomal RNA; KW transfer RNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; KW transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; KW transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; KW transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; KW transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; KW transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; KW transfer RNA-Tyr; transfer RNA-Val. XX OS Phoca vitulina OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; OC Theria; Eutheria; Carnivora; Caniformia; Musteloidea; Phocidae. XX OG Mitochondrion XX RN [1] RA Arnason U., Johnsson E.; RT "The complete mitochondrial DNA sequence of the Harbor seal, phoca RT vitulina"; RL J. Mol. Evol. 34:493-505(1992). XX RN [2] RP 1-16826 RA Arnason U.; RT ; RL Submitted (17-FEB-1992) on tape to the EMBL Data Library by: RL U. Arnason, Dept of Mol Genetics, Univ of Lund, Box 7031, S-220 07 RL Lund, SWEDEN XX FH Key Location/Qualifiers FH FT tRNA 935..1004 FT /gene="tRNA-Phe" FT rRNA 1005..1965 FT /gene="12S rRNA" FT tRNA 1966..2038 FT /gene="tRNA-Val" FT rRNA 2039..3603 FT /gene="16S rRNA" FT tRNA 3604..3677 FT /gene="tRNA-Leu" /note="anticodon UUR" FT CDS 3680..4636 FT /product="NADH dehydrogenase subunit 1" FT tRNA 4636..4704 FT /gene="tRNA-Ile" FT tRNA complement(4702..4789) FT /gene="tRNA-Gln" FT tRNA 4790..4844 FT /gene="tRNA-Met" FT CDS 4845..5888 FT /product="NADH dehydrogenase subunit 2" FT tRNA 5887..5953 FT /gene="tRNA-Trp" FT tRNA complement(5964..6032) FT /gene="tRNA-Ala" FT tRNA complement(6034..6106) FT /gene="tRNA-Asn" FT rep_origin 6107..6142 FT /note="origin L-strand replication" FT tRNA complement(6139..6205) FT /gene="tRNA-Cys" FT tRNA complement(6206..6273) FT /gene="tRNA-Tyr" FT CDS 6275..7819 FT /product="cytochrome c oxidase subunit I" FT tRNA complement(7817..7887) FT /gene="tRNA-Ser" /note="anticodon UCN" FT tRNA 7892..7958 FT /gene="tRNA-Asp" FT CDS 7959..8642 FT /product="cytochrome c oxidase subunit II" FT tRNA 8644..8712 FT /gene="tRNA-Lys" FT CDS 8714..8917 FT /product="ATPase subunit 8" FT CDS 8875..9555 FT /product="ATPase subunit 6" FT CDS 9555..10337 FT /product="cytochrome oxidase subunit III" FT /note="no stop codon" FT tRNA 10339..10406 FT /gene="tRNA-Gly" FT CDS 10407..10751 FT /product="NADH dehydrogenase subunit 3" FT tRNA 10754..10822 FT /gene="tRNA-Arg" FT CDS 10823..11119 FT /product="NADH dehydrogenase subunit 4L" FT CDS 11113..12489 FT /product="NADH dehydrogenase subunit 4L" FT tRNA 12491..12559 FT /gene="tRNA-His" FT tRNA 12560..12618 FT /gene="tRNA-Ser" /note="anticodon AGY" FT tRNA 12619..12679 FT /gene="tRNA-Leu" /note="anticodon CUN" FT CDS 12680..14509 FT /product="NADH dehydrogenase subunit 5" FT CDS complement(14493..15020) FT /product="NADH dehydrogenase subunit 6" FT tRNA complement(15021..15089) FT /gene="tRNA-Glu" FT CDS 15094..16233 FT /product="cytochrome b" FT tRNA 16234..16302 FT /gene="tRNA-Thr" FT tRNA complement(16304..16369) FT /gene="tRNA-Pro" XX SQ Sequence 16826 BP; 5550 A; 4616 C; 2403 G; 4257 T; 0 other; ID MIPVDNA standard; DNA; ORG; 16826 BP. XX AC X63726; XX DT 19-JUN-1992 (Rel. 32, Created) DT 19-JUN-1992 (Rel. 32, Last updated, Version 2) XX DE P.vitulina mitochondrial DNA, complete genome XX KW 16S ribosomal RNA; cytochrome b; cytochrome C oxidase subunit I; KW cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; KW NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; KW NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; KW NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; KW NADH dehydrogenase subunit 6; origin of replication; ribosomal RNA; KW transfer RNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; KW transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; KW transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; KW transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; KW transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; KW transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; KW transfer RNA-Tyr; transfer RNA-Val. XX OS Phoca vitulina OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; OC Theria; Eutheria; Carnivora; Caniformia; Musteloidea; Phocidae. XX OG Mitochondrion XX RN [1] RA Arnason U., Johnsson E.; RT "The complete mitochondrial DNA sequence of the Harbor seal, phoca RT vitulina"; RL J. Mol. Evol. 34:493-505(1992). XX RN [2] RP 1-16826 RA Arnason U.; RT ; RL Submitted (17-FEB-1992) on tape to the EMBL Data Library by: RL U. Arnason, Dept of Mol Genetics, Univ of Lund, Box 7031, S-220 07 RL Lund, SWEDEN XX FH Key Location/Qualifiers FH FT tRNA 935..1004 FT /gene="tRNA-Phe" FT rRNA 1005..1965 FT /gene="12S rRNA" FT tRNA 1966..2038 FT /gene="tRNA-Val" FT rRNA 2039..3603 FT /gene="16S rRNA" FT tRNA 3604..3677 FT /gene="tRNA-Leu" /note="anticodon UUR" FT CDS 3680..4636 FT /product="NADH dehydrogenase subunit 1" FT tRNA 4636..4704 FT /gene="tRNA-Ile" FT tRNA complement(4702..4789) FT /gene="tRNA-Gln" FT tRNA 4790..4844 FT /gene="tRNA-Met" FT CDS 4845..5888 FT /product="NADH dehydrogenase subunit 2" FT tRNA 5887..5953 FT /gene="tRNA-Trp" FT tRNA complement(5964..6032) FT /gene="tRNA-Ala" FT tRNA complement(6034..6106) FT /gene="tRNA-Asn" FT rep_origin 6107..6142 FT /note="origin L-strand replication" FT tRNA complement(6139..6205) FT /gene="tRNA-Cys" FT tRNA complement(6206..6273) FT /gene="tRNA-Tyr" FT CDS 6275..7819 FT /product="cytochrome c oxidase subunit I" FT tRNA complement(7817..7887) FT /gene="tRNA-Ser" /note="anticodon UCN" FT tRNA 7892..7958 FT /gene="tRNA-Asp" FT CDS 7959..8642 FT /product="cytochrome c oxidase subunit II" FT tRNA 8644..8712 FT /gene="tRNA-Lys" FT CDS 8714..8917 FT /product="ATPase subunit 8" FT CDS 8875..9555 FT /product="ATPase subunit 6" FT CDS 9555..10337 FT /product="cytochrome oxidase subunit III" FT /note="no stop codon" FT tRNA 10339..10406 FT /gene="tRNA-Gly" FT CDS 10407..10751 FT /product="NADH dehydrogenase subunit 3" FT tRNA 10754..10822 FT /gene="tRNA-Arg" FT CDS 10823..11119 FT /product="NADH dehydrogenase subunit 4L" FT CDS 11113..12489 FT /product="NADH dehydrogenase subunit 4L" FT tRNA 12491..12559 FT /gene="tRNA-His" FT tRNA 12560..12618 FT /gene="tRNA-Ser" /note="anticodon AGY" FT tRNA 12619..12679 FT /gene="tRNA-Leu" /note="anticodon CUN" FT CDS 12680..14509 FT /product="NADH dehydrogenase subunit 5" FT CDS complement(14493..15020) FT /product="NADH dehydrogenase subunit 6" FT tRNA complement(15021..15089) FT /gene="tRNA-Glu" FT CDS 15094..16233 FT /product="cytochrome b" FT tRNA 16234..16302 FT /gene="tRNA-Thr" FT tRNA complement(16304..16369) FT /gene="tRNA-Pro" XX SQ Sequence 16826 BP; 5550 A; 4616 C; 2403 G; 4257 T; 0 other; BASE COUNT 355 a 229 c 166 g 211 t 4252 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UC CUA-UUAGUU -U-UUAA-UA |AG-AU--UA -UAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCGGU GAAAA---UG C|CCU-Ccaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-ccaaua acc--)---- 1261 ---------- ---------- ---g--auu- a-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACACU- -----(aaac a--------- ---------- ---------- ------)--- 1381 --AGU|---A GCUUA--CAA C|GCCUU-GC --|------- (-uca--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUa----C-A 1501 GCA|GUA-AU AAAAAUUAAG C-UAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCUA-U- AU-UAAaccu cca------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUAG G-------cc cuCGGC|GUA AAGCGUGUU- -aaaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -ucaacccac acuaaa--gc -----|UAAA acCUAA-CCA ----AGCC(G 2341 UAAAA)AGCU AC-------C GUUA-AcauA AAA------- -----uagac -cAC(-GAAA 2401 -)GU|g---- ----acuuua cuaa------ -u-------- ucu-gacuGC ACGAU-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 A--AAUA-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- acg(uaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-CC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AUUCCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(aac- 3181 aa-)------ A-AGUAAGCA CAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cgcuac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-A-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- aau--)---- ---------- ---------- AAG-AAcaau 4021 cau------- ------ACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-AACA--AA -C--UAAAG- -GUGGAUUUA 4141 G-U--AGUAA G-CUAAGA(- auaga-ga-- --)GCUUAGC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCG--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaauaaac- 4381 ucuac-aag- -------cua cauaaaac-- ---------- caacacaa-a acauaca--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (19)-Cetac 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (20)-Mysti 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.B.mysti 5213 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Balaena mysticetus.; . ACCESSION U13079 KEYWORDS . SOURCE Mitochondrion Balaena mysticetus. ORGANISM Mitochondrion Balaena mysticetus. REFERENCE 1 (bases 1 to 386) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 386) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U13079 NCBI gi: 595575 BASE COUNT 140 a 91 c 66 g 89 t 4827 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(---~~~~ -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~~ 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~~~-~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~-~~C- CAUAAA-CUC 2521 U--AAUA-GU |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ca(aaac)a a---G-ACUA 2701 C-U|--C|GC C-AGAG-UAC UACUAGC(-- -AAUA--)GC CUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAUA-CC CCCCUAGA|G GAGCCUGU-U |CUAUA--AA CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC AACCCUUGCU ---------- ---------- 2881 (-------ac uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(- --AAA)AGG- -----(gaa- 3181 cga)------ A-AGUAAGCA UAA-CCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ccuac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-G-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua uu---)---- ---------- ---------- AAG-AAcauu 4021 ccuuau---a cuca-caCGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-u-) U-AA-A--AA -C--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UCAAGA(- gcaga-gu-- --)GCUUGAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAA--GGCC 4261 A~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.B.muscu 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Balaenoptera musculus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Balaenoptera musculus. ORGANISM Mitochondrion Balaenoptera musculus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X72204 DEFINITION B.musculus mitochondrial DNA complete genome SOURCE Balaenoptera musculus ORGANISM Mitochondrion Balaenoptera musculus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Cetacea; Mysticeti; Balaenopteridae. REFERENCE 2 (bases 1 to 16402) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (18-MAY-1993) U. Arnason, University of Lund, Dept of Genetics, Division of Molecular Genetics, The Wallenberg Laboratory, Box 7031, 220 07 Lund, SWEDEN REFERENCE 4 (bases 1 to 16402) AUTHORS Arnesson,U., Gullberg,A. and Bengt,W. TITLE Catacean mitochondrial DNA control region: sequences of all extant baleen whales two sperm whale species JOURNAL Mol. Biol. Evol. 10, 960-970 (1993) FEATURES Location/Qualifiers source 1..16402 /organism="Balaenoptera musculus" /mitochondrion tRNA 422..494 /product="tRNA-Phe" rRNA 496..1467 /product="12S rRNA" tRNA 1468..1534 /product="tRNA-Val" rRNA 1535..3109 /product="16S rRNA" tRNA 3110..3184 /product="tRNA-Leu(UUR)" tRNA 4143..4211 /product="tRNA-Ile" tRNA complement(4209..4281) /product="tRNA-Gln" tRNA 4283..4351 /product="tRNA-Met" tRNA 5394..5462 /product="tRNA-Trp" tRNA complement(5468..5536) /product="tRNA-Ala" tRNA complement(5538..5611) /product="tRNA-Asn" rep_origin 5611..5647 /note="origin of L-strand replication" tRNA complement(5644..5711) /product="tRNA-Cys" tRNA complement(5712..5777) /product="tRNA-Tyr" tRNA complement(7325..7395) /product="tRNA-Ser(UCN)" tRNA 7401..7468 /product="tRNA-Asp" tRNA 8156..8223 /product="tRNA-Lys" tRNA 9851..9919 /product="tRNA-Gly" tRNA 10267..10335 /product="tRNA-Arg" tRNA 12004..12072 /product="tRNA-His" tRNA 12073..12133 /product="tRNA=Ser(AGY)" tRNA 12135..12204 /product="tRNA-Leu(CUN)" tRNA complement(14537..14605) /product="tRNA-Glu" tRNA 15750..15821 /product="tRNA-Thr" tRNA complement(15821..15887) /product="tRNA-Pro" misc_feature 15888..421 /note="control region" CDS 3187..4143 /gene="NADH1" /product="NADH-ubiquinone oxidoreductase subunit 1" /codon_start=1 /translation="MFMINILTLILPILLAVAFLTLVERKILGYMQFRKGPNIVGPHG LLQPFADAIKLFTKEPLRPATSSTTMFIIAPVLALALALTMWSPLPMPYPLINMNLGV LFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSY TLSTLATTQEQLWLLFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAG PFALFFLAEYANIIMMNMFTAILFLGTFHNPCNPELYTTNLIIKTLLLTMSFLWIRAS YPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT" CDS 4352..5395 /gene="NADH2" /product="NADH-ubiquinone oxidoreductase subunit 2" /codon_start=1 /translation="MNPSIFIILLTTLILGTMMVITSSHWLLAWIGFEMNMMAFIPIM MKNPSPRATEASTKYLLTQATASALLMMAVIINLMYSGQWTITKLFNPTASTLMTVAL AIKLGLAPFHFWVPEVTQGIPLTTGLILLTWQKLAPLSILYQISPSINLYLMLTMSLL SILVGGWGGLNQTQLRKIMAYSSIAHMGWMTTILPYNPTLTLLNLLIYITMTFTMFML FIQNSTTTTLSLSQTWNKTPIITTLTMLTLLSMGGLPPLSGFMPKWMIIQELTKNDIL IMPTFMAITALLNLYFYMRLTYSTALTLFPSTNNMKMKWQFSPTKRAPLLPTAIVIST MLLPLTPMLSILL" CDS 5779..7329 /gene="COI" /product="cytochrome oxidase subunit I" /codon_start=1 /translation="MFMNRWLFSTNHKDIGTLYLLFGAWAGMVGTGLSLLIRAELGQP GTLIGDDQVYNVLVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSF WLLPPSFLLLMASSMIEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILG AINFITTIINMKPPAMTQYQTPLFVWSVLVTAVLLLLSLPVLAAGITMLLTDRNLNTT FFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMIWA MVSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKW SPALMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGG FVHWFPLFSGYTLNTTWAKIHFLIMFVGVNLTFFPQHFLGLSGMPRRYSDYPDAYTTW NTISSMGSFISLTAVMLMIFIIWEAFTSKREVLAVDLTYTNLEWLNGCPPPYHTFEEP AFVNPKWSS" CDS 7469..8152 /gene="COII" /product="cytochrome oxidase subunit II" /codon_start=1 /translation="MAYPFQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIITL MLTTKLTHTSTMDAQEVETVWTILPAIILILIALPSLRILYMMDEVNNPSLTVKTMGH QWYWSYEYTDYEDLSFDSYMIPTSDLKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVL HSWAVPSLGLKTDAIPGRLNQTTLMSTRPGLFYGQCSEICGSNHSFMPIVLELVPLEF FEKWSASML" CDS 8225..8416 /gene="ATPase8" /product="ATP synthase subunit 8" /codon_start=1 /translation="MPQLDTSTWLLTILSMLLTLFVLFQLKISKHSYSPNPKLVPTKT QKQQTPWNITWTKIYLPLL" CDS 8386..9066 /gene="ATPase6" /product="ATP synthase subunit 6" /codon_start=1 /translation="MNENLFAPFMIPVMLGIPITTLIIILPSILFPAPNRLINNRTIS IQQWLTKLTSKQLMSVHSPKGQTWSLMLISLFLFIASTNLLGMLPHSFTPTTQLSMNV GMAIPLWAGTVATGFRNKTKMSLAHLLPQGTPTFLIPMLVIIETISLFIQPVALAVRL TANITAGHLLMHLIGETTLVLMSTSLFTAIITFTILALLTILEFRVALIQAYVFTLLV SLYLHDNT" CDS 9066..9851 /gene="COIII" /product="cytochrome oxidase subunit III" /codon_start=1 /translation="MTHQTHSYHMVNPSPWPLTGALSALLMTSGLIMWFHFNSMILLT LGLSTNILTMYQWWRDIIRESTFQGHHTPTVQKGLRYGMILFIVSEVLFFTGFFWAFY HSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGNRKHML QALFITIALGLYFTLLQASEYYEAPFTISDGIYGSTFFVATGFHGLHVIIGSTFLIVC FLRQVKFHFTSNHHFGFERAAWYWHFVDVVWLFLYVSIYWWGS" CDS 9920..10266 /partial /gene="NADH3" /note="no stop codon" /product="NADH-ubiquinone oxidoreductase subunit 3" /codon_start=1 /translation="MNLLLTLLTNTTLALLLVFIAFWLPQLNVYAEKTSPYECGFDPM GSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQSNNLNTMLTMALFLISLLAASL AYEWTQEGLEWAE" CDS 10336..10632 /gene="NADH4L" /product="NADH-ubiquinone oxidoreductase subunit 4L" /codon_start=1 /translation="VTLIHMNVLMAFSMSLVGLLMYRSHLMSALLCLEGMMLSLFVLA ALTILNSHFTLANMMPIILLVFAAYVAAIGLALLVMVSNTYGTDYVQSLNLLQC" CDS 10626..12003 /partial /gene="NADH4" /note="no stop codon" /product="NADH-ubiquinone oxidoreductase subunit 4" /codon_start=1 /translation="MLKFIIPTIMLMPLTWLSKNNLIWINSTAHSLLISFSSLLLLNQ LNDNSLNYSLIFFSDPLSTPLLMLTMWLLPLMLMASQSHLIKEPPVRKKLYITMLIML QALLIMTFTATELILFYIMFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLIGSLPL LVALVYLQNTTGSLNFLLLQHWAKPLSASWSNIFMWLACMMAFLVKMPLYGLHLWLPK AHVEAPIAGSMVLAAVLLKLGGYGMLRITSMLNPLTEHMAYPFLMLSLWGMIMTSSIC LRQTDLKSLIAYSSVSHMALVIAAILIQTPWSYMGATALMIAHGLTSSMLFCLANSNY ERIHSRTMILARGLQVLLPLMATWWLLASLTNLALPPTINLVGELLVVMSVFSWSNPT ILLMGANIVITALYTLYMLIMTQRGKHTHHINNIIPSFTREHALMALHIIPLLLLSLN PKIILGPLY" CDS 12205..14025 /gene="NADH5" /product="NADH-ubiquinone oxidoreductase subunit 5" /codon_start=1 /translation="MNLFTSFVLLTLLILFTPIMVSNTDPHKNNKYQSYVKNIVFCAF ITSLIPAMMYLHTNQETLISNWHWITIQTLKLTLSFKMDYFSLMFMPVALFITWSIME FSMWYMHSDPYINQFFKYLLLFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWFG RTDANTAALQAILYNRIGDIGLLASMAWFLSNMNTWDLQQIFMLNQNPLNFPLMGLVL AAAGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLVRFYPLMENNKLIQTV TLCLGAITTLFTAICALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPYLAFLHICTHAF FKAMLFLCSGSIIHNLNNEQDIRKMGGLFKALPFTTTALIIGCLALTGMPFLTGFYSK DPIIEAATSSYTNAWALLLTLTATSLTAVYSTRIIFFALLGQPRFPPSTTINENNPLL INPIKRLLIGSIFAGFILSNSIPPVITPLMTMPLHLKLTALTMTTLGFIIAFEINLDT QNLKYTHPSNPFKFSTLLGYFPTIMHRLPPHLDLSMSQKLATSLLDLTWLETTLPKTT ALIQLKASTLTSNQQGLIKLYFLSFLITITLSMILFNCPE" CDS complement(14009..14536) /gene="NADH6" /product="NADH-ubiquinone oxidoreductase subunit 6" /codon_start=1 /translation="MVTYIVFVLSIIFVISFVGVSSKPSPIYGGLGLIVGGGAGCGVV LSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEQYPEVWVSNKVVLGAFILGLVVESL IVIYALKSGEVKIVFEFDGLGDWVIYDTGGSGVFSEEATGIAALYSYGVWLVIVTGWS LFVSVVIIMEITRGN" CDS 14610..15749 /product="cytochrome b" /codon_start=1 /translation="MTNIRKTHPLMKIINDAFIDLPTPSNISSWWNFGSLLGLCLIVQ ILTGLFLAMHYTPDTMTAFSSVTHICRDVNYGWVIRYLHANGASMFFICLYAHMGRGL YYGSHAFRETWNIGVILLFTVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGTTL VEWIWGGFSVDKATLTRFFAFHFILPFIIMALAIVHLIFLHETGSNNPTGIPSDMDKI PFHPYYTIKDILGALLLILTLLMLTLFAPDLLGDPDNYTPANPLSTPAHIKPEWYFLF AYAILRSIPNKLGGVLALLLSILVLALIPMLHTSKQRSMMFRPFSQFLFWVLVADLLT LTWIGGQPVEHPYVIVGQLASILYFLLILVLMPVTSLIENKLMKWS" BASE COUNT 348 a 229 c 180 g 215 t 4241 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC C|AGCCU-UU CUA-UUAGUU -C-UUAA-CA |AA-CU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------guc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCAUCCCGGU GAGAA---UG C|CCU-Cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-acaaa- -----)---- 1261 ---------- ---------- ---g--auc- a-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACGCUa -----(guac ---------- ---------- ---------- ------)--- 1381 -uAGC|---A GCUCA--CAA C|GCCUC-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- GU-UAAuaa- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-C---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAG A-------aa caCGGC|GUA AAGAGUGUU- -aagga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -gucucauag aauaaa--gu -----|CAAA ccUUAA-UUA ----AGCU(G 2341 UAAAA)AGCC AU-------A AUUA-AaauU AAG------- ----ccaaac -uAC(-GAAA 2401 -)GU|g---- ----acuuua auauga---- ---------- ucu-gaucAC ACGAC-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CCC 2521 C--AGUA-GU |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ca(aaac)a a---G-ACUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAUA-CC CCUCUAGA|G GAGCCUGU-U |CUGUA--AC CG(AUAAACC 2821 C--------- ----)CGAUU A-ACCUCACC AACCCUUGCU ---------- ---------- 2881 (-------ac uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)GGG- -----(aac- 3181 ga-)------ A-AGUAAGCA UAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ccuac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC AAU------- ---------G 3841 G-G-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa cu---)---- ---------- ---------- AAG-AAuauc 4021 ccuaua---- --ca-cACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-u-) U-AA-A--AA -C--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UCAAGA(- gcaga-gu-- --)GCUUGAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua--c- 4381 cccag-cuaa ag--ccacag uucauuaa-- cuc--aggcc aag-caacuu auacga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CC(GGA 4621 -A)GGU-GU- GCUUGGACAA AA-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.phy.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Balaenoptera physalus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Balaenoptera physalus. ORGANISM Mitochondrion Balaenoptera physalus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X61145 ID MIBPCG standard; DNA; ORG; 16398 BP. XX AC X61145; XX DT 25-SEP-1991 (Rel. 29, Last updated, Version 2) DT 25-SEP-1991 (Rel. 29, Created) XX DE B.physalus mitochondrial DNA, complete genome XX KW 12S ribosomal RNA; 16S ribosomal RNA; ATPase subunit 6; KW ATPase subunit 8; complete genome; cytochrome b; KW cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; KW cytochrome coxidase; cytochromecoxidase subunit I; KW mitochondrial DNA; NADH dehydrogenase; KW NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; KW NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; KW NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; KW NADH dehydrogenase subunit 6; ribosomal RNA; transfer RNA; KW transfer RNA-ala; transfer RNA-Arg; transfer RNA-Asn; KW transfer RNA-ASP; transfer RNA-Gln; transfer RNA-Glu; KW transfer RNA-gly; transfer RNA-His; transfer RNA-Ile; KW transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; KW transfer RNA-phe; transfer RNA-Pro; transfer RNA-Ser; KW transfer RNA-Thr; transfer RNA-Tyr; transfer RNA-Val; KW transfer-RNA-Trp. XX OS Balaenoptera physalus OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; OC Theria; Eutheria; Cetacea; Mysticeti; Balaenopteridae. XX OG Mitochondrion XX RN [1] RP 1-16398 RA Arnason U.; RT ; RL Submitted (09-AUG-1991) on tape to the EMBL Data Library by: RL U. Arnason, Dept of Mol Gen, The Wallenberg Lab, P.O. Box 7031, RL S-220 07 Lund, SWEDEN XX RN [2] RP 1-16398 RA Arnason U., Gullberg A., Widegren B.; RT "The complete nucleotide sequence of the mitochondrial DNA RT molecule of the fin whale, balaenoptera physalus"; RL Unpublished. XX CC *source: stage=adult female; CC *source: tissue=liver; CC *source: isolate=no 27, anno 1987; XX FH Key Location/Qualifiers FH FT tRNA 422..494 FT /product="tRNA-Phe" FT rRNA 496..1471 FT /product="12S rRNA" FT tRNA 1472..1538 FT /product="tRNA-Val" FT rRNA 1539..3112 FT /product="16S rRNA" FT tRNA 3113..3187 FT /product="tRNA-Leu" FT tRNA 4146..4214 FT /product="tRNA-Ile" FT tRNA complement(4212..4284) FT /product="tRNA-Gln" FT tRNA 4286..4354 FT /product="tRNA-Met" FT tRNA 5397..5465 FT /product="tRNA-Trp" FT tRNA 5539..5471 FT /product="tRNA-Ala" FT tRNA complement(5541..5614) FT /product="tRNA-Asn" FT rep_origin 5614..5650 FT /direction=LEFT FT tRNA complement(5647..5714) FT /product="tRNA-Cys" FT tRNA 5780..5715 FT /product="tRNA-Tyr" FT tRNA complement(7328..7398) FT /product="tRNA-Ser" FT tRNA 7404..7471 FT /product="tRNA-Asp" FT tRNA 8159..8226 FT /product="tRNA-Lys" FT CDS 8228..8419 FT /product="ATPase subunit 8" FT CDS 8389..9069 FT /product="ATPase subunit 6" FT tRNA 9854..9922 FT /product="tRNA-Gly" FT tRNA 10270..10338 FT /product="tRNA-Arg" FT tRNA 12007..12075 FT /product="tRNA-His" FT tRNA 12076..12136 FT /product="tRNA-Ser" FT tRNA 12138..12207 FT /product="tRNA-Leu" FT tRNA complement(14540..14608) FT /product="tRNA-Glu" FT CDS 14613..15752 FT /product="cytochrome b" FT tRNA 15753..15824 FT /product="tRNA-Thr" FT tRNA complement(15824..15890) FT /product="tRNA-Pro" FT D-loop join(15891..16398,1..421) FT CDS 3190..4146 FT /product="NADH dehydrogenase subunit 1" FT CDS 4355..5398 FT /product="NADH dehydrogenase subunit 2" FT CDS 9923..10267 FT /product="NADH dehydrogenase subunit 3" FT CDS 10339..10635 FT /product="NADH dehydrogenase subunit 4L" FT CDS 10629..12005 FT /product="NADH dehydrogenase subunit 4" FT CDS 12208..14028 FT /product="NADH dehydrogenase subunit 5" FT CDS complement(14012..14539) FT /product="NADH dehydrogenase subunit 6" FT CDS 5782..7332 FT /product="cytochrome c oxidase subunit I" FT CDS 7472..8155 FT /product="cytochrome c oxidase subunit II" FT CDS 9069..9854 FT /product="cytochrome c oxidase subunit III" XX SQ Sequence 16398 BP; 5359 A; 4474 C; 2182 G; 4383 T; 0 other; BASE COUNT 341 a 238 c 185 g 212 t 4237 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC C|AGCCU-UU CUA-UUAGUU -C-UUAA-CA |GA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCAUCCCAGU GAGAA---CG C|CCU-Cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-auaaa- -----)---- 1261 ---------- ---------- ---g--auu- a-aAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACGCUa -----(gcac ---------- ---------- ---------- ------)--- 1381 -uAGC|---A GCUCA--CAA C|GCCUC-GC --|------- (-uua--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG ACa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-UAUAAAC( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-GUCA-U- GU-UAAuuua a--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-C---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUC|--- -GAC-CCA-- 1981 AAUUA-AUAG A-------ag caCGGC|GUA AAGAGUGUU- -aagga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -gccacauga aauaaa--gu -----|CAAA ccUUAA-UUA ----AGCU(G 2341 UAAAA)AGCC CU-------A AUUA-AaauU AAG------- ----ccaaac -uAC(-GAAA 2401 -)GU|g---- ----acuuua auauaa---- ---------- ucu-gaucAC ACGAC-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGU- CGUAAA-CCC 2521 C--AAUA-GU |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ca(aaac)a a---G-ACUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC CUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCUCAUA-CC CAUCUAGA|G GAGCCUGU-U |CUGUA--AC CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC AACCCUUGCU ---------- ---------- 2881 (-------ac uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(a ----a)AGG- -----(gag- 3181 aa-)------ A-AGUAAGCA UAA-CCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ccuac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC CAU------- ---------G 3841 G-G-UU-GG- GA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ag cu---)---- ---------- ---------- AAG-AAcauc 4021 cccuau---a cuca-cACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-u-) U-AA-A--AA -C--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UCAAGA(- gcaga-gu-- --)GCUUGAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 AUGAGGGCA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua--c- 4381 cccag-cuau aaa-ccccag uucguuaa-- cuc--aggcc aag-c-aauu auacga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CC(GGA 4621 -A)GGU-GU- GCUUGGACAA AA-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.phy.2 5213 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Balaenoptera physalus.; . ACCESSION U13080 KEYWORDS . SOURCE Mitochondrion Balaenoptera physalus. ORGANISM Mitochondrion Balaenoptera physalus. REFERENCE 1 (bases 1 to 385) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE sequences from three mitochondrial genes Phylogeny of all major groups of cetaceans based on DNA JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 385) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U13080 NCBI gi: 595576 BASE COUNT 136 a 93 c 69 g 87 t 4828 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(---~~~~ -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~~ 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~~~-~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~-~~U- CGUAAA-CCC 2521 C--AAUA-GU |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ca(aaac)a a---G-ACUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC CUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCUCAUA-CC CAUCUAGA|G GAGCCUGU-U |CUGUA--AC CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC AACCCUUGCU ---------- ---------- 2881 (-------ac uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A ----A)AGG- -----(gag- 3181 caa)------ A-AGUAAGCA UAA-CCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ccuac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC CAU------- ---------G 3841 G-G-UU-GG- GA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ag cu---)---- ---------- ---------- AAG-AAcauc 4021 cccuau---a cuca-caCGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-u-) U-AA-A--AA -C--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UCAAGA(- gcaga-gu-- --)GCUUGAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 A~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.novae 5213 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Megaptera novaeangliae.; . ACCESSION U13094 KEYWORDS . SOURCE Mitochondrion Megaptera novaeangliae. ORGANISM Mitochondrion Megaptera novaeangliae. REFERENCE 1 (bases 1 to 382) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 382) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U13094 NCBI gi: 595590 BASE COUNT 135 a 93 c 69 g 85 t 4831 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(---~~~~ -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~~ 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~~~-~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~-~~~- CGUAAA-CCC 2521 U--AAUA-GU |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ca(aaac)a a---G-ACUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC CUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAUA-CC CCUCUAGA|G GAGCCUGU-U |CUGUA--AC CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC AACCCUUGCU ---------- ---------- 2881 (-------ac uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AA-)GGG- -----(agc- 3181 aa-)------ A-AGUAAGCA UAA-CCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ccuac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-G-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ag cu---)---- ---------- ---------- AAG-AAcauc 4021 cc-cua---- cc-cacACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-u-) U-AA-A--AA -C--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UCAAGA(- gcaga-gu-- --)GCUUGAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 A~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~-~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.E.robus 5213 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Eschrichtius robustus.; . ACCESSION U13085 KEYWORDS . SOURCE Mitochondrion Eschrichtius robustus. ORGANISM Mitochondrion Eschrichtius robustus. REFERENCE 1 (bases 1 to 386) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 386) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U13085 NCBI gi: 595581 BASE COUNT 137 a 90 c 69 g 90 t 4827 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(---~~~~ -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~~ 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~~~-~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~-~~C- CGUAAA-CCC 2521 U--AAUA-GU |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ca(aaac)a a---G-ACUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAUA-CC CCUCUAGA|G GAGCCUGU-U |CUGUA--AC CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC AACCCUUGCU ---------- ---------- 2881 (-------ac uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)GGG- -----(aac- 3181 ga-)------ A-AGUAAGCA UAA-CCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ccuac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-G-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ag cu---)---- ---------- ---------- AAG-AAuauc 4021 cc-cua---u auccacACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-u-) U-AA-A--AA -C--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UCAAGA(- gcaga-gu-- --)GCUUGAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 A~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~-~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (20)-Odont 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.C.eutro 5213 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Cephalorhynchus eutropia.; . ACCESSION U13082 KEYWORDS . SOURCE Mitochondrion Cephalorhynchus eutropia. ORGANISM Mitochondrion Cephalorhynchus eutropia. REFERENCE 1 (bases 1 to 387) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE sequences from three mitochondrial genes Phylogeny of all major groups of cetaceans based on DNA JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 387) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U13082 NCBI gi: 595578 BASE COUNT 146 a 84 c 66 g 91 t 4826 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(---~~~~ -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~~ 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~~~-~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~-~~C- CGUAAA-CUU 2521 A--AAUA-GU |CC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ua(aaac)a a---G-ACUA 2701 U-U|--C|GC C-AGAG-UAC UAUCGGC(-- -AACA--)GC CCA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAUA-UC CUUCUAGA|G GAGCCUGU-U |CUGUA--AA CG(AUAAACC 2821 A--------- ----)CGAUU A-ACCUCACC AAUCCUUGCU ---------- ---------- 2881 (-------ac uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A A-AAA)AGG- -----(aac- 3181 ga-)------ A-AGUAAGCA CAA-CCAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ugcac- 3781 ---------G UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-A-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua au---)---- ---------- ---------- AAG-AAcacc 4021 ccauaa---a cuua-caCGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-A--AA -C--UAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-au-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 A~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.delph 5213 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Delphinus delphis.; . ACCESSION U13083 KEYWORDS . SOURCE Mitochondrion Delphinus delphis. ORGANISM Mitochondrion Delphinus delphis. REFERENCE 1 (bases 1 to 387) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE sequences from three mitochondrial genes Phylogeny of all major groups of cetaceans based on DNA JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 387) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U13083 NCBI gi: 595579 BASE COUNT 145 a 83 c 66 g 93 t 4826 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(---~~~~ -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~~ 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~~~-~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~-~~U- CGUAAA-CUU 2521 A--AAUA-AU |CC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ca(aaac)a a---G-AUUA 2701 U-U|--C|GC C-AGAG-UAC UAUCGGC(-- -AACA--)GC CCA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAUA-UC CUUCUAGA|G GAGCCUGU-U |CUGUA--AA CG(AUAAACC 2821 A--------- ----)CGAUU A-ACCUCACC AAUCCUUGCU ---------- ---------- 2881 (-------ac uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A A-AAA)AGG- -----(aac- 3181 ga-)------ A-AGUAAGCA CAA-CUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ugcac- 3781 ---------G UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-A-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua au---)---- ---------- ---------- AAG-AAcacc 4021 ccuuaa---a cuca-caCGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-A--AA -C--UAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-au-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UGA--GGCC 4261 A~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.G.melas 5213 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Globicephala melas.; . ACCESSION U13086 KEYWORDS . SOURCE Mitochondrion Globicephala melas. ORGANISM Mitochondrion Globicephala melas. REFERENCE 1 (bases 1 to 387) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 387) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U13086 NCBI gi: 595582 BASE COUNT 144 a 79 c 67 g 94 t 4829 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(---~~~~ -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~~ 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~~~-~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~-~~U- CGUAAA-CUU 2521 A--AAUA-GU |CC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ua(gaac)a a---G-ACUA 2701 U-U|--C|GC C-AGAG-UAC UAUCGGC(-- -AACA--)GC CCA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAUA-UC CUUCUAGA|G GAGCCUGU-U |CUGUA--AA CG(AUAAACC 2821 A--------- ----)CGAUU A-ACCUCACC AAUCCUUGCU ---------- ---------- 2881 (-------ac uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A A-AAA)AGG- -----(aau- 3181 ga-)------ A-AGUAAGCA CAA-CYAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ugcac- 3781 ---------G UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-A-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ca au---)---- ---------- ---------- AAG-AAcacc 4021 ccyu-a---a acuuayACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-c-) U-AA-A--AA -C--UAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-au-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 A~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~-~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.L.albir 5213 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Lagenorhynchus albirostris.; . ACCESSION U13090 KEYWORDS . SOURCE Mitochondrion Lagenorhynchus albirostris. ORGANISM Mitochondrion Lagenorhynchus albirostris. REFERENCE 1 (bases 1 to 386) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE sequences from three mitochondrial genes Phylogeny of all major groups of cetaceans based on DNA JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 386) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U13090 NCBI gi: 595586 BASE COUNT 145 a 80 c 66 g 95 t 4827 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(---~~~~ -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~~ 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~~~-~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~-~~U- CGUAAA-CUU 2521 A--AAUA-GU |CC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ua(aaac)a a---G-ACUA 2701 U-U|--C|GC C-AGAG-UAC UAUCGGC(-- -AACA--)GC CCA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAUA-UC CUUCUAGA|G GAGCCUGU-U |CUGUA--AA CG(AUAAACC 2821 A--------- ----)CGAUU A-ACCUCACC AAUCUUUGCU ---------- ---------- 2881 (-------ac uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A A-AAA)AGG- -----(aau- 3181 ga-)------ A-AGUAAGCA CAA-CUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ugcac- 3781 ---------G UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------A 3841 G-A-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua ac---)---- ---------- ---------- AAG-AAcacc 4021 ccuu-a---a acuuauACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AG-A--AA -C--UAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-au-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AAA--GGCC 4261 -~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~-~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.L.obscu 5213 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Lagenorhynchus obscurus.; . ACCESSION U13091 KEYWORDS . SOURCE Mitochondrion Lagenorhynchus obscurus. ORGANISM Mitochondrion Lagenorhynchus obscurus. REFERENCE 1 (bases 1 to 387) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE sequences from three mitochondrial genes Phylogeny of all major groups of cetaceans based on DNA JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 387) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U13091 NCBI gi: 595587 BASE COUNT 145 a 82 c 66 g 94 t 4826 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(---~~~~ -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~~ 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~~~-~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~-~~U- CGUAAA-CUU 2521 A--AAUA-GU |CC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ua(aaac)a a---G-ACUA 2701 U-U|--C|GC C-AGAG-UAC UAUCGGC(-- -AACA--)GC CCA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAUA-UC CUUCUAGA|G GAGCCUGU-U |CUGUA--AA CG(AUAAACC 2821 A--------- ----)CGAUU A-ACCUCACC AAUCCUUGCU ---------- ---------- 2881 (-------ac uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A A-AAA)AGG- -----(aac- 3181 ga-)------ A-AGUAAGCA CAA-CUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ugcac- 3781 ---------G UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-A-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua ac---)---- ---------- ---------- AAG-AAcacc 4021 ccuu-a---a acuuacACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-A--AA -C--UAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-au-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 A~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~-~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.L.peron 5213 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Lissodelphis peronii.; . ACCESSION U13092 KEYWORDS . SOURCE Mitochondrion Lissodelphis peronii. ORGANISM Mitochondrion Lissodelphis peronii. REFERENCE 1 (bases 1 to 387) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE sequences from three mitochondrial genes Phylogeny of all major groups of cetaceans based on DNA JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 387) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U13092 NCBI gi: 595588 BASE COUNT 146 a 82 c 65 g 94 t 4826 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(---~~~~ -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~~ 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~~~-~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~-~~U- CGUAAA-CUU 2521 A--AAUA-GU |CC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ua(aaac)a a---G-ACUA 2701 U-U|--C|GC C-AGAG-UAC UAUCGGC(-- -AACA--)GC CCA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAUA-UC CUUCUAGA|G GAGCCUGU-U |CUAUA--AA CG(AUAAACC 2821 A--------- ----)CGAUU A-ACCUCACC AAUCCUUGCU ---------- ---------- 2881 (-------ac uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A A-AAA)AGG- -----(aac- 3181 ga-)------ A-AGUAAGCA CAA-CUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ugcac- 3781 ---------G UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-A-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua au---)---- ---------- ---------- AAG-AAcacc 4021 ccuu-a---a auuuacACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-A--AA -C--CAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-au-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 A~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~-~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.coe.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Stenella coeruleoalba. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Stenella coeruleoalba. ORGANISM Mitochondrion Stenella coeruleoalba. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X78169 DEFINITION S.coeruleoalba mitochondrial 12S rRNA gene, male. SOURCE Stenella coeruleoalba ORGANISM Stenella coeruleoalba Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Odontoceta; Delphinidae. REFERENCE 1 (bases 1 to 974) AUTHORS Douzery,E. and Catzeflis,F.M. TITLE Evolutionary relationships among Cetacea JOURNAL Unpublished REFERENCE 2 (bases 1 to 974) AUTHORS Catzeflis,F.M. JOURNAL Submitted (10-JAN-1994) to the EMBL/GenBank/DDBJ databases. F.M. Catzeflis, Institut Sciences Evolution URA 327, CNRS Universite de Montpellier 11, Case 064, 34095 Montpellier, FRANCE COMMENT NCBI gi: 460986 FEATURES Location/Qualifiers source 1..974 /organism="Stenella coeruleoalba" /isolate="T-1081" /sex="male" rRNA 1..974 /gene="12S rRNA" /product="12S ribosomal RNA" BASE COUNT 351 a 225 c 179 g 219 t 4239 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|GGCCU-UU CUA-UUAGUU -C-UUAG-CA |GA-CU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUCCCAGU GAGAA---UG C|CCU-Ccaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(auuaaa- -----)---- 1261 ---------- ---------- ---g--acu- a-aAAGGAGC |--------- gGGCAUCA-- 1321 -AGCACACU- -----(auac c--------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--UAA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUa----C-A 1501 GCA|GUG-AC AAGAAUUAGG C-UAUGAAC( ---------- ----GAAA)G UUUGA-CCU| 1561 A|-GCCA-U- GC-UAAuua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -GAC-CCA-- 1981 AAUUA-AUAG A-------ca ccCGGC|GUA AAGAGUGUC- -aagga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------a -caauauaaa aauaaa--gu -----|CAAA ccUUAA-UUA ----AGCU(G 2341 UAAAA)AGCC AU-------A AUUA-AaauU AAG------- ----uuaaac -uAC(-GAAA 2401 -)GU|a---- ----acuuua ccauaa---- ---------- acu-gaguAC ACGAC-AACU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGU- CGU-AA-CUU 2521 A--AAUA-AU |CC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ua(aaac)a a---G-AUUA 2701 U-U|--C|GC C-AGAA-UAC UAUCGGC(-- -AACA--)GC CA---AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAUA-UC CUUCUAGA|G GAGCCUGU-U |CUGUA--AA CG(AUAAACC 2821 A--------- ----)CGAUU A-ACCUCACC AAUCCUUGCU ---------- ---------- 2881 (-------ac uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A A-AAA)AGG- -----(aac- 3181 ga-)------ A-AGUAAGCA CAA-CUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ugcac- 3781 ---------G UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-A-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua au---)---- ---------- ---------- AAG-AAcacc 4021 ccuuua---a acucacACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-A--AA -C--UAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-au-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagug--c- 4381 cauag-ca-a ag--ccccag auugcuaa-- ccc--augcu aag-c-aagc guacaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CC(GGA 4621 -A)GGU-GU- GCUUGGAUAA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.coe.2 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Stenella coeruleoalba. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Stenella coeruleoalba. ORGANISM Mitochondrion Stenella coeruleoalba. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X78168 DEFINITION S.coeruleoalba mitochondrial 12S rRNA gene, female. SOURCE Stenella coeruleoalba ORGANISM Stenella coeruleoalba Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Odontoceta; Delphinidae. REFERENCE 1 (bases 1 to 973) AUTHORS Douzery,E. and Catzeflis,F.M. TITLE Evolutionary relationships among Cetacea JOURNAL Unpublished REFERENCE 2 (bases 1 to 973) AUTHORS Catzeflis,F.M. JOURNAL Submitted (10-JAN-1994) to the EMBL/GenBank/DDBJ databases. F.M. Catzeflis, Institut Sciences Evolution URA 327, CNRS Universite de Montpellier 11, Case 064, 34095 Montpellier, FRANCE COMMENT NCBI gi: 460987 FEATURES Location/Qualifiers source 1..973 /organism="Stenella coeruleoalba" /isolate="T-1080" /sex="female" rRNA 1..973 /gene="12S rRNA" /product="12S ribosomal RNA" BASE COUNT 350 a 225 c 177 g 217 t 4244 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|GGCCU-UU CUA-UUAGUU -C-UUAG-CA |GA-CU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUCCCAGU GAGAA---UG C|CCU-Ccaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(auuaaa- -----)---- 1261 ---------- ---------- ---g--acu- a-aAAGGAGC |--------- gGGCAUCA-- 1321 -AGCACACU- -----(auac c--------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--UAA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUa----C-A 1501 GCA|GUG-AC AAGAAUUAGG C-UAUGAAC( ---------- ----GAAA)G UUUGA-CCU| 1561 A|-GCCA-U- GC-UAAuua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -GAC-CCA-- 1981 AAUUA-AUAG A-------ca ccCGGC|GUA AAGAGUGUC- -aaaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------a -caauauaaa aauaaa--gu -----|CAAA ccUUAA-UUA ----AGCU(G 2341 UAAAA)AGCC AU-------A AUUA-AaauU AAG------- ----uuaaac -uAC(-nAAA 2401 -)GU|a---- ----acuuua ccauaa---- ---------- acu-gaguAC ACGAC-AACU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGU- CGU-AA-CUU 2521 A--AAUA-AU |CC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ua(aaac)a a---G-AUUA 2701 U-U|--C|GC C-AGAG-UAC UAUCGGC(-- -AACA--)GC CA---AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAUA-UC CUUCUAGA|G GAGCCUGU-U |CUGUA--AA CG(AUAAACC 2821 A--------- ----)CGAUU A-ACCUCACC AAUCCUUGCU ---------- ---------- 2881 (-------ac uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A A-AAA)AGG- -----(aac- 3181 ga-)------ A-AGUAAGCA CAA-CUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ugcac- 3781 ---------G UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-A-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua au---)---- ---------- ---------- AAG-AAcacc 4021 ccuuaa---a cuca-cACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UNAAAc-c-) U-AA-A--AA -C--UAAAG- -GnGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-au-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU B--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagug--c- 4381 cauag-ca-a ag--ccccag auugcuaa-- ccc--acgcu aag-c-aagc guacaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CC(GGA 4621 -A)GGU-GU- GCUUGGAUAA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.trunc 5213 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Tursiops truncatus.; . ACCESSION U13100 KEYWORDS . SOURCE Mitochondrion Tursiops truncatus. ORGANISM Mitochondrion Tursiops truncatus. REFERENCE 1 (bases 1 to 387) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 387) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U13100 NCBI gi: 595596 BASE COUNT 145 a 82 c 64 g 94 t 4828 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(---~~~~ -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~~ 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~~~-~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~-~~U- CGUAAA-CUU 2521 A--AAUA-AU |CC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ua(aaac)a a---G-AUUA 2701 U-U|--C|GC C-AGAG-UAC UAUCGGC(-- -AACA--)GC CCA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAUA-UC CUUCUAGA|G GAGCCUGU-U |CUGUA--AA CG(AUAAACC 2821 A--------- ----)CGAUU A-ACCUCACC AAUCCUUGCU ---------- ---------- 2881 (-------ac uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A R-AAA)AGG- -----(aac- 3181 ga-)------ A-AGUAAGCA CAA-CUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----urcac- 3781 ---------G UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-A-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua au---)---- ---------- ---------- AAG-AAcacc 4021 ccuu-a---a acucacACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-A--AA -C--UAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-au-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 A~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~-~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.leuca 5213 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Delphinapterus leucas.; . ACCESSION U13084 KEYWORDS . SOURCE Mitochondrion Delphinapterus leucas. ORGANISM Mitochondrion Delphinapterus leucas. REFERENCE 1 (bases 1 to 387) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 387) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U13084 NCBI gi: 595580 BASE COUNT 140 a 88 c 69 g 89 t 4827 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(---~~~~ -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~~ 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~~~-~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~-~~U- CGUAAA-CUU 2521 A--AAUA-GU |CC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uua(aaac)a a---G-ACUA 2701 U-U|--C|GC C-AGAG-UAC UACCGGC(-- -AACA--)GC CCG--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAUA-UC CCUCUAGA|G GAGCCUGU-U |CUGUA--AA CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC AAUCCUUGCU ---------- ---------- 2881 (-------ac cu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aac- 3181 ga-)------ A-AGUAAGCA CAA-CUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cgcac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-G-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua ac---)---- ---------- ---------- AAG-AAcauc 4021 ccucaa---g ucu-acACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAa-c-) U-AA-A--AA -C--CAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-gu-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 N~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~-~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.phoco 5213 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Phocoena phocoena.; . ACCESSION U13098 KEYWORDS . SOURCE Mitochondrion Phocoena phocoena. ORGANISM Mitochondrion Phocoena phocoena. REFERENCE 1 (bases 1 to 385) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE sequences from three mitochondrial genes Phylogeny of all major groups of cetaceans based on DNA JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 385) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U13098 NCBI gi: 595594 BASE COUNT 145 a 87 c 65 g 87 t 4829 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(---~~~~ -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~~ 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~~~-~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~-~~~- ~~UAAA-CCU 2521 A--AAUA-GU |CC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ua(aaac)a a---G-ACUA 2701 U-U|--C|GC C-AGAG-UAC UAUCGGC(-- -AACA--)GC CCA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAUA-UC CUUCUAGA|G GAGCCUGU-U |CUGUA--AA CG(AUAAACC 2821 A--------- ----)CGAUC A-ACCUCACC AACCCUUGCU ---------- ---------- 2881 (-------ac uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aac- 3181 ga-)------ A-AGUAAGCA CAA-CUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-G-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ya caa-c)---- ---------- ---------- AAG-AAcacc 4021 ccuua----a acuuacACGA --AAGUC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-A--GA -C--UAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-au-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 A~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~-~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.spini 5213 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Phocoena spinipinnis.; . ACCESSION U13099 KEYWORDS . SOURCE Mitochondrion Phocoena spinipinnis. ORGANISM Mitochondrion Phocoena spinipinnis. REFERENCE 1 (bases 1 to 387) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 387) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U13099 NCBI gi: 595595 BASE COUNT 143 a 88 c 67 g 89 t 4826 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(---~~~~ -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~~ 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~~~-~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~-~~U- CGUAAA-CCU 2521 A--AAUA-GU |CC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ua(aaac)a a---G-ACUA 2701 U-U|--C|GC C-AGAG-UAC UAUCGGC(-- -AACA--)GC CCA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAUA-UC CUUCUAGA|G GAGCCUGU-U |CUGUA--AA CG(AUAAACC 2821 A--------- ----)CGAUC A-ACCUCACC AACCCUUGCU ---------- ---------- 2881 (-------ac uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aac- 3181 ga-)------ A-AGUAAGCA UAA-CUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacgc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC CAU------- ---------G 3841 G-G-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ca ac---)---- ---------- ---------- AAG-AAcauc 4021 cccuua---a acucacACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-A--GA -C--UAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-au-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 A~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~-~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.K.brevi 5213 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Kogia breviceps.; . ACCESSION U13088 KEYWORDS . SOURCE Mitochondrion Kogia breviceps. ORGANISM Mitochondrion Kogia breviceps. REFERENCE 1 (bases 1 to 386) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 386) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U13088 NCBI gi: 595584 BASE COUNT 138 a 91 c 69 g 87 t 4828 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(---~~~~ -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~~ 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~~~-~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~-~~C- CGUAAA-CCU 2521 A--AAUA-GA |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ua(gaac)a a---G-AUUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC CUG--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAUA-CC CCUCUAGA|G GAGCCUGU-U |CUGUA--AC CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC AACCCUUGCU ---------- ---------- 2881 (-------ac uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aau- 3181 aa-)------ A-AGUAAGCA UAA-CUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cccac- 3781 ---------G UAAAAA-CGU U-AGGUCAAG G|UGUA|ACU CAU------- ---------G 3841 G-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ca uu---)---- ---------- ---------- AAG-AAcacc 4021 c-uuca---u acucacACGA --AAGUU-UU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-GA-A--AR -C--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-gu-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 A~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~-~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.K.simus 5213 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Kogia simus.; . ACCESSION U13089 KEYWORDS . SOURCE Mitochondrion Kogia simus. ORGANISM Mitochondrion Kogia simus. REFERENCE 1 (bases 1 to 386) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE sequences from three mitochondrial genes Phylogeny of all major groups of cetaceans based on DNA JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 386) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U13089 NCBI gi: 595585 BASE COUNT 138 a 94 c 69 g 85 t 4827 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(---~~~~ -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~~ 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~~~-~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~-~~C- CGUAAA-CCU 2521 A--AAUA-GA |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ua(aaac)a a---G-ACUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC CUG--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-CC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC AACCCUUGCU ---------- ---------- 2881 (-------ac uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aac- 3181 aa-)------ A-AGUAAGCA CAA-CCAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cccac- 3781 ---------G UAAAAA-CGU U-AGGUCAAG G|UGUA|ACU CAU------- ---------G 3841 G-G-CU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua uu---)---- ---------- ---------- AAG-AAcacc 4021 c-uuca---c acucacACGA --AAGCU-UU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-c-) U-GA-A--AG -C--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- guaga-gu-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 A~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~-~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.catod 5213 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Physeter catodon.; . ACCESSION U13096 KEYWORDS . SOURCE Mitochondrion Physeter catodon. ORGANISM Mitochondrion Physeter catodon. REFERENCE 1 (bases 1 to 384) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 384) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U13096 NCBI gi: 595592 BASE COUNT 139 a 95 c 67 g 83 t 4829 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(---~~~~ -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~~ 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~~~-~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~-~~C- CGUAAA-CCC 2521 A--GGUA-GU |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ua(aaac)a a---G-ACUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC CUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAUA-CC CCCCUAGA|G GAGCCUGU-U |CUAUA--AC CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC AACCCUUGCU ---------- ---------- 2881 (-------ac uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aau- 3181 ga-)------ A-AGUAAGCA UAA-CUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ccuac- 3781 ---------G UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC CAU------- ---------G 3841 G-G-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(cac ca---)---- ---------- ---------- UAG-AAcacc 4021 c--uau---a ccc--cACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-A--AA -C--CAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- acaga-gu-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 A~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~-~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.I.geoff 5213 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Inia geoffrensis.; . ACCESSION U13087 KEYWORDS . SOURCE Mitochondrion Inia geoffrensis. ORGANISM Mitochondrion Inia geoffrensis. REFERENCE 1 (bases 1 to 387) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 387) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U13087 NCBI gi: 595583 BASE COUNT 139 a 88 c 69 g 91 t 4826 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(---~~~~ -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~~ 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~~~-~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~-~~C- CGUAAA-CUU 2521 A--AAUA-GU |CU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ca(agac)a a---G-ACCA 2701 U-U|--C|GC C-AGAG-UAC UACCGGC(-- -AACA--)GC CCA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCGCA-UC CUUCUAGA|G GAGCCUGU-U |CUAUA--AA CG(AUAAACC 2821 C--------- ----)CGAUU A-ACCUCACC AACCCUCGCU ---------- ---------- 2881 (-------ac uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UC-AA|G-CA AAC-|CCU(A --AAA)AGG- -----(agc- 3181 aa-)------ G-AGUAAGCA UAA-UUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cuuac- 3781 ---------A UAAGAA-CGU U-AGGUCAAG G|UGUA|ACU UAU------- ---------G 3841 A-G-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua ac---)---- ---------- ---------- AAG-AAcacc 4021 ucuuac---a uacaccACGA --AAGUU-UU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-A--AA -C--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-CUAAGA(- guaga-gu-- --)GCUUAUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 A~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~-~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.europ 5213 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Mesoplodon europaeus.; . ACCESSION U13093 KEYWORDS . SOURCE Mitochondrion Mesoplodon europaeus. ORGANISM Mitochondrion Mesoplodon europaeus. REFERENCE 1 (bases 1 to 382) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE sequences from three mitochondrial genes Phylogeny of all major groups of cetaceans based on DNA JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 382) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U13093 NCBI gi: 595589 BASE COUNT 132 a 84 c 73 g 93 t 4831 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(---~~~~ -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~~ 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~~~-~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~-~~~- ~GUAAA-CCU 2521 A--AAUA-GU |CU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ca(aaac)a a---G-ACUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AAUA--)GC CUA--AAACU CAAGGGAC-U 2761 UG|GCGGUG- CUUCAUA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC AACCCUUGCU ---------- ---------- 2881 (-------ac uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCC(A --AAA)GGG- -----(aac- 3181 ga-)------ G-AGUAAGCA UAA-CUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cuugc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua uu---)---- ---------- ---------- AAG-AAcauc 4021 ccu-ac---g uccau-ACGA --AGGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-c-) U-AG-A--AA -C--UAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-CUAAGA(- auaga-gu-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 -~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~-~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.peruv 5213 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Mesoplodon peruvianus.; . ACCESSION U13095 KEYWORDS . SOURCE Mitochondrion Mesoplodon peruvianus. ORGANISM Mitochondrion Mesoplodon peruvianus. REFERENCE 1 (bases 1 to 386) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 386) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U13095 NCBI gi: 595591 BASE COUNT 137 a 71 c 69 g 108 t 4828 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(---~~~~ -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~~ 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~~~-~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~-~~U- CGUAAA-CCU 2521 A--AAUA-GU |CU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ua(aaac)a a---G-ACUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AAUA--)GC CUA--AAACU CAAGGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUU A-ACCUUACC AACCCUUGCU ---------- ---------- 2881 (-------ac uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)GGG- -----(rau- 3181 ga-)------ G-AGUAAGCA UAA-UUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----auuac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACU UAU------- ---------G 3841 G-G-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua uu---)---- ---------- ---------- AAG-AA-uau 4021 ucuuau---a cuuuauACGA --AGGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-A--AA -C--UAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-CUAAGA(- auaga-gu-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 A~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~-~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Z.cavir 5213 bp RNA RNA 07-DEC-1994 DEFINITION Mitochondrion Ziphius cavirostris.; . ACCESSION U13101 KEYWORDS . SOURCE Mitochondrion Ziphius cavirostris. ORGANISM Mitochondrion Ziphius cavirostris. REFERENCE 1 (bases 1 to 386) AUTHORS Milinkovitch,M.C., Meyer,A. and Powell,J.R. TITLE Phylogeny of all major groups of cetaceans based on DNA sequences from three mitochondrial genes JOURNAL Mol. Biol. Evol. (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 386) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (08-AUG-1994) Michel C. Milinkovitch, Department of Genetics, Liege University, Faculty of Veterinary Medicine, Sart Tilman B-43, 4000 Liege, Belgium STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U13101 NCBI gi: 595597 BASE COUNT 135 a 89 c 71 g 91 t 4827 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(---~~~~ -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~~ 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~~~-~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~-~~C- CGUAAA-CCU 2521 A--AACA-GU |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ca(aaac)a a---G-ACUG 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -CAUA--)GC CUA--AAACU CAAGGGAC-U 2761 UG|GCGGUG- CUUCAUA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC AACCCUUGCU ---------- ---------- 2881 (-------ac uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UC-CA|G-CG AAC-|CCU(A --AAA)AGG- -----(aac- 3181 ga-)------ A-AGUAAGCA UAA-UUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cuuac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ca uc---)---- ---------- ---------- AAG-AAca-u 4021 ccuuau---u auccgcACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-u-) U-AA-A--GA -C--UAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- gcaga-gu-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 A~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~-~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (19)-Chiro 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (20)-Megac 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.E.spela 5213 bp RNA RNA 20-MAR-1997 DEFINITION Mitochondrion Eonycteris spelaea.; . ACCESSION U93059 KEYWORDS . SOURCE Mitochondrion Eonycteris spelaea. ORGANISM Mitochondrion Eonycteris spelaea. REFERENCE 1 (bases 1 to 1032) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Old World fruitbat phylogeny: evidence for convergent evolution and an endemic African clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1032) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (11-MAR-1997) Biology, University of California - Riverside, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U93059 BASE COUNT 344 a 232 c 185 g 208 t 4244 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC C|AGCCU-UU CUA-UUAGCC -C-UUAG-UA |AG-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACUCCGGU GAAAA---UG C|CCU-Ucaa --gu-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(ac--ugc a----)---- 1261 ---------- ---------- ---g--acc- u-gAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACACU- -----(auac ---------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--CGA C|GCCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUa----C-A 1501 GCA|GUG-AC AAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCUA-U- AC-UAA---- -cuuua---- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUUA-AUAG A-------ca uaCGGC|GUA AAGCGUGUU- -aagga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------acu -ucacccauu aauaaa--gc -----|UGAA ucuaag-cua ----cGCC(G 2341 UAGAA)AGCU cua------g ccuagaca-A AAA------- -----uaauc -uAC(-GAAA 2401 -)GU|g---- ----acuuua aauua----- ---------- uccga-c-AC ACGAU-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCA 2521 A--AGCa-GU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a uca(uaac)a a---U-ACUA 2701 C-U|--C|GC C-AGAG-CAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AACCCUUGCC ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aag- 3181 cg-)------ C-AGUAAGCA AAA-ACAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----agaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 G-G-UU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- aca--)---- ---------- ---------- UAG-AAuauu 4021 ---------- -----aaCGA --AAAUU-UU C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) C-GA-A--AA -U--GGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 cca----aag uaugaccaac caaccuuauu aaug-aacau aca-caca-- -uacaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C GUA-CC(GGA 4621 -A)GGU-GC- GCUUGGACAA ACCAAAGU-| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.minim 5213 bp RNA RNA 20-MAR-1997 DEFINITION Mitochondrion Macroglossus minimus.; . ACCESSION U93062 KEYWORDS . SOURCE Mitochondrion Macroglossus minimus. ORGANISM Mitochondrion Macroglossus minimus. REFERENCE 1 (bases 1 to 1036) AUTHORS Hollar,L.J. and Springer,M.S. TITLE evolution and an endemic African clade Old World fruitbat phylogeny: evidence for convergent JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1036) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (11-MAR-1997) Biology, University of California - Riverside, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U93062 BASE COUNT 353 a 230 c 179 g 205 t 4246 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|GGCCU-UU CUA-UUAACC -C-UUAG-UA |GG-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCGGU GAAAA---UG C|CCU-Ucag --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(ac-uuaa uu---)---- 1261 ---------- ---------- ---g--auc- c-aAAGGAGC |--------- gGGCAUCA-- 1321 -AGCACACC- -----(uaca caac------ ---------- ---------- ------)--- 1381 --GGU|---A GCUCA--CAA C|GCCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCCA-U- AC-UAA---- -aauua---- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AGC-CCA-- 1981 AGUUA-AUAG A-------ca caCGGC|GUA AAACGUGUA- -uaaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------a -ucccaaacc aauaaa--gu -----|UAAA ucagaa-cuu ----uGCC(G 2341 UAGAA)AGCc caa------g cucugacc-A AAA------- -----uaaac -uAC(-GAAA 2401 -)GU|g---- ----acuuua acuua----- ---------- cccga-cuAC ACGAU-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CCUAAA-CCG 2521 A--AGUG-AC |A-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a c-a(uaac)a a---U-GUCA 2701 C-U|--C|GC C-AGAG-AAC UACUAGC(-- -UACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AACCCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCC(A --AAA)GGG- -----(gac- 3181 ca-)------ C-AGUAAGCA AAA-ACAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aaaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-G-UU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a uaa--)---- ---------- ---------- UAG-AAcaua 4021 ---------- -----aaCGA --AAAUU-UU C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) C-GA-A--AA -u--AGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagug---- 4381 cca----uga uauaacaauc aaucau-aua aaua-accgu auu-aaca-- -cgcaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGACAU AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.woerm 5213 bp RNA RNA 20-MAR-1997 DEFINITION Mitochondrion Megaloglossus woermanni.; . ACCESSION U93055 KEYWORDS . SOURCE Mitochondrion Megaloglossus woermanni. ORGANISM Mitochondrion Megaloglossus woermanni. REFERENCE 1 (bases 1 to 1030) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Old World fruitbat phylogeny: evidence for convergent evolution and an endemic African clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1030) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (11-MAR-1997) Biology, University of California - Riverside, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U93055 BASE COUNT 339 a 234 c 180 g 209 t 4251 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUG-UUAACU -U-UUAG-UA |GG-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUUCCAGU GAAGA---UG C|CCU-Ucaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(a--ucaa cu---)---- 1261 ---------- ---------- ---g--aua- a-gAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACACU- -----(acca ca-------- ---------- ---------- ------)--- 1381 --UGU|---A GCUCA--CGA C|GCCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCCA-U- AC-UAA---- -ucca----- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUA|--- -AAC-CCG-- 1981 AGUUA-ACAG A-------ca caCGGC|GUA AAGCGUGUU- -uagua---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------aa -accccgcuc aauaaa--gu -----|UAAA ccuaaa-cua ----uGCC(G 2341 UAGAA)AGCU cua------g uucagaca-A AAA------- -----uaaac -cAC(-GAAG 2401 -)GU|g---- ----acuuua aacac----- ---------- uucga-c-AC ACGAU-AGCU 2461 G-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CCUAAA-CCU 2521 A--AGUA-GU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a uuu(caac)a a---U-ACUA 2701 C-C|--C|GC C-GGAG-UAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AGCCCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CG AAC-|CCU(A --AGA)AGG- -----(aau- 3181 ua-)------ C-AGUAAGCC AAA-CCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----auaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-CU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- aca--)---- ---------- ---------- UAG-AAcaua 4021 ---------- ------aCGA --AACUU-UU C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) C-GA-A--AA -C--GGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 ccc----aaa uacaaucaac uaaccuuauu aacaaacgua ucc-aca--- -uacaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGAUAA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.fardo 5213 bp RNA RNA 20-MAR-1997 DEFINITION Mitochondrion Melonycteris fardoulisi.; . ACCESSION U93056 KEYWORDS . SOURCE Mitochondrion Melonycteris fardoulisi. ORGANISM Mitochondrion Melonycteris fardoulisi. REFERENCE 1 (bases 1 to 1044) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Old World fruitbat phylogeny: evidence for convergent evolution and an endemic African clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1044) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (11-MAR-1997) Biology, University of California - Riverside, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U93056 BASE COUNT 353 a 221 c 183 g 217 t 4239 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cauGGGUU 661 (UGG-)U-CC U|GGCCC-UU CUA-UUAGCU -U-UUAG-UA |GA-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCGGU GAAAA---UG C|CCU-Uaaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(ac-ucaa au---)---- 1261 ---------- ---------- ---g--acu- u-aAAGGAGC |--------- cGGUAUCA-- 1321 -AGCGCGCC- -----(auca ---------- ---------- ---------- ------)--- 1381 --AGC|---A GCUCA--AGA C|ACCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACa----C-A 1501 GCA|GUG-AC AAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCCA-U- AC-UAA---- -cacaca--- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUUA-AUAG A-------ca aaCGGC|GUA AGGCGUGUU- -uagga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ----gauacu -ucacaacaa aauaaa--gu -----|UAAA uaaaag-cug ----uGCU(G 2341 UAAAA)AGCU ucg------g cuuaaaua-A AAA------- -----uaaac -uAC(-GAAA 2401 -)GU|g---- ----acuuua a-acu----- ---------- acuga-uuAC ACGAU-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CUA 2521 A--AAUA-GC |u-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a caa(uaac)a a---U-ACUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AACUCUAGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(acc- 3181 ca-)------ C-AGUAAGCA AGA-GCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaauc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-UU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- aua--)---- ---------- ---------- UAA-UAgaau 4021 ---------- auauuaaCGA --AAAUU-CC C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) C-GA-G--AA -u--AGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUGAGA(- auaga-ga-- --)GCUCAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagca---- 4381 cca----caa uauguauaua uacaaccuau uaac-agcgu aua-aaca-- -uguaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGAUAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.N.macdo 5213 bp RNA RNA 20-MAR-1997 DEFINITION Mitochondrion Notopteris macdonaldi.; . ACCESSION U93057 KEYWORDS . SOURCE Mitochondrion Notopteris macdonaldi. ORGANISM Mitochondrion Notopteris macdonaldi. REFERENCE 1 (bases 1 to 1038) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Old World fruitbat phylogeny: evidence for convergent evolution and an endemic African clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1038) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (11-MAR-1997) Biology, University of California - Riverside, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U93057 BASE COUNT 343 a 226 c 189 g 211 t 4244 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC C|AGCCU-UU CUA-UUGGUU -U-UUAG-UA |GG-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCUCCGGU GAAAA---UG C|CCU-Ucaa --gu-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(ac--cca gu---)---- 1261 ---------- ---------- ---g--acc- g-aAAGGAGC |--------- gGGCAUCA-- 1321 -AGCACACC- -----(acau a--------- ---------- ---------- ------)--- 1381 --UGU|---A GCUAA--CGA C|GCCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UUa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-GAUGAAC( ---------- ----GAAA)G UUUGA-CUU| 1561 A|-GCCA-U- AC-UAA---- -uacucca-- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCU-- 1981 AAUCA-AUAG A-------ug aaCGGC|GUA AAACGUGUU- -aagga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------au -ccaauauaa aauaaa--gu -----|UAAA ucugag-cug ----uGCU(G 2341 UAGAA)AGCU cca------g ccccgaca-A AAA------- -----uaaac -cAC(-GAAG 2401 -)GU|g---- ----acuuua aauaua---- ---------- uccga-ccAC ACGAU-AGCU 2461 A-GGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-CUU 2521 A--AAUA-GC |c-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a aca(caac)a a---U-GCUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CAUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AACCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CG AAC-|CCU(A --AAA)AGG- -----(aac- 3181 ca-)------ U-AGUAAGCA AAA-CCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aaaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------G 3841 A-G-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- aua--)---- ---------- ---------- UAG-AAcacc 4021 ---------- ----auaCGA --AAAUU-UC C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) C-GG-A--AA -u--GGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-CUAAGA(- auaga-ga-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 uca----aga uacaaauaac uaacccuauu aaug-aaugu aca-caaa-- -uauaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGACAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.austr 5213 bp RNA RNA 20-MAR-1997 DEFINITION Mitochondrion Syconycteris australis.; . ACCESSION U93060 KEYWORDS . SOURCE Mitochondrion Syconycteris australis. ORGANISM Mitochondrion Syconycteris australis. REFERENCE 1 (bases 1 to 1031) AUTHORS Hollar,L.J. and Springer,M.S. TITLE evolution and an endemic African clade Old World fruitbat phylogeny: evidence for convergent JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1031) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (11-MAR-1997) Biology, University of California - Riverside, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U93060 BASE COUNT 353 a 215 c 184 g 216 t 4245 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCU-UU CUA-UUGACU -A-UUAG-UA |AG-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACUCCGGU GAAAA---UG C|CCU-Ugaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(a-acaaa cu---)---- 1261 ---------- ---------- ---g--aua- a-aAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACACC- -----(acau ---------- ---------- ---------- ------)--- 1381 --GGU|---G GCUCA--UAA C|GCCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCUA-U- AC-UAA---- -cacuaa--- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AGUUA-AUAG A-------ua uaCGGC|GUA AAACGUGUU- -aagga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -aauuacccc aauaaa--gu -----|UAAG uauagg-uua ----uGCC(G 2341 UAAAA)AGCc cua------g cccaauca-A AAA------- -----uaaac -cAC(-GAAG 2401 -)GU|g---- ----acuuua aauaa----- ---------- uccga-auAC ACGAU-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 A--AAUA-GC |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aca(caac)a a---U-GCUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AACUCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(C --AAA)AGG- -----(aac- 3181 ca-)------ U-AGUAAGCA AAA-UUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ggaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- aga--)---- ---------- ---------- UAG-AAcaua 4021 ---------- -----aaCGA --AAAUU-UU C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) C-GA-A--AA -u--GGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-CUAAGA(- auaga-ga-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 cca----aaa uacaaa-ccu uaacccuguu agca-auugu aua-caca-- -uauua---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGACAA ACCAAAGU-| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.celeb 5213 bp RNA RNA 20-MAR-1997 DEFINITION Mitochondrion Acerodon celebensis.; . ACCESSION U93071 KEYWORDS . SOURCE Mitochondrion Acerodon celebensis. ORGANISM Mitochondrion Acerodon celebensis. REFERENCE 1 (bases 1 to 1039) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Old World fruitbat phylogeny: evidence for convergent evolution and an endemic African clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1039) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (11-MAR-1997) Biology, University of California - Riverside, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U93071 BASE COUNT 362 a 223 c 175 g 210 t 4243 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCC-UU CUA-UUAACC -A-CCAG-UA |AG-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACUCCGGU GAAGA---UG C|CCU-Uuua --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(ac---cu aaga-)---- 1261 ---------- ---------- ---g--aug- a-aAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACACU- -----(acau ---------- ---------- ---------- ------)--- 1381 --AGU|---A GCUAA--AGA C|GCCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUa----C-A 1501 GCA|GUG-AC AAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-GCUA-U- AC-UAA---- -cuuau-ua- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUUA-AUAG A-------ca uaCGGC|GUA AAACGUGUU- -aagga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----aaauc -ccaccacaa aauaaa--gu -----|UAAA ucuukaacua ----uGCU(G 2341 UAGAA)AGCu cua------g ccaagaca-A AAA------- -----uaaac -cAC(-GAAA 2401 -)GU|g---- ----acuuua aacua----- ---------- uccga-ccAC ACGAU-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 A--AAUA-GC |C-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a aaa(caac)a a---U-GCUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AACUCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aaa- 3181 ca-)------ A-AGUAAGCA AAA-CCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----gaaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- acu--)---- ---------- ---------- UAG-AAcauu 4021 ---------- -----aACGA --AAAUU-UU C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) C-GA-A--AA -U--AGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- acaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UCA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 uaa----aga uacaauuauc caauccuauu aacaaac-gu aca-caca-- -uacaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGAUAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.bulme 5213 bp RNA RNA 20-MAR-1997 DEFINITION Mitochondrion Aproteles bulmerae.; . ACCESSION U93066 KEYWORDS . SOURCE Mitochondrion Aproteles bulmerae. ORGANISM Mitochondrion Aproteles bulmerae. REFERENCE 1 (bases 1 to 1034) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Old World fruitbat phylogeny: evidence for convergent evolution and an endemic African clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1034) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (11-MAR-1997) Biology, University of California - Riverside, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U93066 BASE COUNT 351 a 227 c 187 g 201 t 4247 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aaaAGGUU 661 (UGG-)U-CC A|AGCCU-UU CUA-UUAGCU -G-CUAG-CA |AG-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACUCCGGU GAAAA---CG C|CCU-Acaa --au-a---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-a-cuaa c----)---- 1261 ---------- ---------- ---g--uau- uacAAGGAGC |--------- cGGUAUCA-- 1321 -AGCACACC- -----(acua a--------- ---------- ---------- ------)--- 1381 --GGU|---A GCUCA--AGA C|ACCUC-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUa----C-A 1501 GCA|GUG-AU AAAAAUUAGG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CCA| 1561 A|-GCUA-U- GC-UAG---- -caccca--- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUUA-AUAG A-------ca uaCGGC|GUA AAACGUGUU- -aagga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------g -cauuacuua aauaag--gu -----|UAAA uccaga-cug ----cGCC(G 2341 UAAAA)AGCU uca------g ccuagaca-A AAA------- -----uaagc -aAC(-GAAA 2401 -)GU|g---- ----acuuua aacac----- ---------- uccga-caAC ACGAU-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCC 2521 A--GGUA-GU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a uaa(uaac)a a---G-ACUA 2701 U-U|--C|GC C-AGAG-UAC UACGAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC GACCCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aac- 3181 ca-)------ U-AGUAAGCA UAA-ACAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----acuac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 G-G-CC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- uga--)---- ---------- ---------- UAG-AAuacc 4021 ---------- ---caaaCGA --AAAUU-UU C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) C-GA-G--AA -u--AGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UCA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 cca----aaa uacacaaaac uaacauaaua -aua-acagu aua-caca-- -ugcga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGAUAU AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.brach 5213 bp RNA RNA 20-MAR-1997 DEFINITION Mitochondrion Cynopterus brachyotis.; . ACCESSION U93068 KEYWORDS . SOURCE Mitochondrion Cynopterus brachyotis. ORGANISM Mitochondrion Cynopterus brachyotis. REFERENCE 1 (bases 1 to 1051) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Old World fruitbat phylogeny: evidence for convergent evolution and an endemic African clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1051) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (11-MAR-1997) Biology, University of California - Riverside, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U93068 BASE COUNT 352 a 217 c 186 g 209 t 4249 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC C|AGCCU-UC CUA-UUAGCC -C-UUAG-CA |GG-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACUCCGGU GAGAA---UG C|CCU-Ucaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(a--ucaa uug--)---- 1261 ---------- ---------- ---g--uuu- --aAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACACU- -----(aacc ca-------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--CGA C|GCCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCCA-U- GC-UAA---- -uuaa----- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGA-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUUA-AUAG G-------ca uaCGGC|GUA AAGCGUGUU- -aagga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------a -uuaaauaau aauaaa--au -----|UAAA ucuuga-cua ----uGCC(G 2341 UAGAA)AGCU caa------g ccaagacu-A AAA------- -----uaagc -cAC(-GAAG 2401 -)GU|g---- ----auuuua aauaa----- ---------- uccaa-ccAC ACGAU-AGCU 2461 A-AGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCA 2521 A--AGCA-GC |A-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a aau(caac)a a---U-ACUG 2701 C-U|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AGUCCUUGCU ---------- ---------- 2881 (-------aa ug-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aau- 3181 ca-)------ U-AGUAAGCA AAA-CCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----gaaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 G-A-CU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- aua--)---- ---------- ---------- UAG-AAcaca 4021 ---------- -----aACGA --AAAUU-UU C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) C-GA-A--AA -U--AGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 uua----aaa gacgaacaau caacuauauu gauaaa--cg uauacaca-- -uauua---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGACAA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.D.moluc 5213 bp RNA RNA 20-MAR-1997 DEFINITION Mitochondrion Dobsonia moluccensis.; . ACCESSION U93065 KEYWORDS . SOURCE Mitochondrion Dobsonia moluccensis. ORGANISM Mitochondrion Dobsonia moluccensis. REFERENCE 1 (bases 1 to 1032) AUTHORS Hollar,L.J. and Springer,M.S. TITLE evolution and an endemic African clade Old World fruitbat phylogeny: evidence for convergent JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1032) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (11-MAR-1997) Biology, University of California - Riverside, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U93065 BASE COUNT 362 a 221 c 178 g 203 t 4249 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aaaAGGUU 661 (UGG-)U-CC C|AGCCU-UU CUA-UUAGCU -G-UUAG-UA |AG-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACUCCGGU GAAGA---CG C|CCU-Ucaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(ac--caa au---)---- 1261 ---------- ---------- ---g--auc- c-gAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACACU- -----(acua aa-------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--AGA C|ACCUC-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUa----C-A 1501 GCA|GUG-AC AAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-GCUA-U- AC-UAA---- -cuccaa--- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUUA-AUAG A-------ca aaCGGC|GUA AAACGUGUU- -aagga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------a -acucuacca aauaaa--gu -----|UAAA ucuagc-cua ----cGCU(G 2341 UAAAA)AGCU uaa------g ucuagaca-A AAA------- -----uaaac -uAC(-GAAA 2401 -)GU|g---- ----acuuua aauac----- ---------- uccga-ccAC ACGAU-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCC 2521 A--AAUA-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a aca(caac)a a---U-AUUA 2701 U-U|--C|GC C-AGAG-CAC UACUAGC(-- -AAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC GACCCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(agc- 3181 ca-)------ U-AGUAAGCA AAA-AUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----agaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------G 3841 G-G-CC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- aaa--)---- ---------- ---------- UAG-AAcaua 4021 ---------- -----uaCGA --AAAUU-UU C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) C-GA-A--AA -U--AGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 cca----aaa auacaagcaa cuaacauaua aaa--ga-gu aua-uaca-- -uauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGACAA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.E.dupra 5213 bp RNA RNA 20-MAR-1997 DEFINITION Mitochondrion Eidolon dupraenum.; . ACCESSION U93058 KEYWORDS . SOURCE Mitochondrion Eidolon dupraenum. ORGANISM Mitochondrion Eidolon dupraenum. REFERENCE 1 (bases 1 to 1042) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Old World fruitbat phylogeny: evidence for convergent evolution and an endemic African clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1042) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (11-MAR-1997) Biology, University of California - Riverside, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U93058 BASE COUNT 334 a 245 c 193 g 203 t 4238 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC C|GGCCU-UU CUA-UUAGCC -C-UUAG-UA |GG-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACGCCGGU GAAAA---UG C|CCUucaac ccgu-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---acca gcu--)---- 1261 ---------- ---------- ---g--acc- a-aaAGGAGC |--------- gGGCAUCA-- 1321 -AGCACACU- -----(acua au-------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--UGA C|GUCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCCA-U- AC-UAA---- -ucca----- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-C ACGAUU|--- -AAC-CCG-- 1981 AGUUA-AUAA A-------uc aaCGGC|GUA AAAUGUGUU- -aagga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------aca -uacccccac aauaaa--gu -----|UAAA ccucgg-cca ----uGCU(G 2341 UAGAA)AGCU CCG------g ccaagaca-A AAA------- -----uaaac -uAC(-GAAA 2401 -)GU|g---- ----acuuua auccca---- ---------- uccga-ccAC ACGAU-AGCU 2461 G-GGA---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-AGC- CUUAAA-CCU 2521 A--GAUA-GU |C-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a aca(caac)a a---U-ACUA 2701 U-U|--C|GC C-AGAG-UAC UACGGGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAUA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC AGCUCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(agc- 3181 ca-)------ A-AGUAAGCA AAA-ACAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -ac-uaaac- 3781 ---------G UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-CC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- ccc--)---- ---------- ---------- UAG-AAcacu 4021 ---------- ---a-gaCGA --AAGUU-UU C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) C-GA-A--AA -U-aUGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUGAGA(- auaga-ga-- --)GCUCAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 cca----aga ugcguauuac uaaucauauu acuauaa-cg cacagaca-- -uauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGACAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.E.wahlb 5213 bp RNA RNA 20-MAR-1997 DEFINITION Mitochondrion Epomophorus wahlbergi.; . ACCESSION U93064 KEYWORDS . SOURCE Mitochondrion Epomophorus wahlbergi. ORGANISM Mitochondrion Epomophorus wahlbergi. REFERENCE 1 (bases 1 to 1028) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Old World fruitbat phylogeny: evidence for convergent evolution and an endemic African clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1028) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (11-MAR-1997) Biology, University of California - Riverside, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U93064 BASE COUNT 330 a 240 c 190 g 201 t 4252 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGCU 661 (UGG-)U-CC U|GGCCU-UU CUA-UUAGCU -U-UUAG-CA |GG-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCGGU GAAGA---UG C|CCU-Ucaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(ac-caac u----)---- 1261 ---------- ---------- ---g--aca- augAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACACU- -----(auca c--------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--CGA C|GCCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCCA-U- GC-UAA---- -ccca----- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUUA-AUAG A-------ca uaCGGC|GUA AAGCGUGUU- -uagaa---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -acccccauc aauaaa--gu -----|UAAA ucugag-cua ----uGCC(G 2341 UAGAA)AGCU uua------g cucagacg-A AAA------- -----caaac -cAC(-GAAA 2401 -)GU|g---- ----acuuua aauau----- ---------- uucga-c-AC ACGAA-AGCC 2461 G-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CCUAAA-CCU 2521 U--AGUA-GU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a uua(caac)a a---U-GCUA 2701 C-U|--C|GC C-AGAG-CAC UACUAGC(-- -AACA--)GC CUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AGUCCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(agc- 3181 ca-)------ A-AGUAAGCC AAA-CCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----gcagc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 G-A-CC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- aca--)---- ---------- ---------- UAG-AAcaua 4021 ---------- ------aCGG --AACUU-UU C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) C-GA-A--AA -C--GGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 ccu----agg uacaacuaau caacccuauu aacg-aacgu aca-cgcc-- -uacaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAAAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.N.albiv 5213 bp RNA RNA 02-SEP-1996 DEFINITION Mitochondrion Nyctimene albiventer.; . ACCESSION U61077 KEYWORDS . SOURCE Mitochondrion Nyctimene albiventer. ORGANISM Mitochondrion Nyctimene albiventer. REFERENCE 1 (bases 1 to 1030) AUTHORS Springer,M.S. and Douzery,E. TITLE mitochondrial 12S rRNA molecules Secondary structure and patterns of evolution among mammalian JOURNAL J. Mol. Evol. 43 (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 1030) AUTHORS Springer,M.S. TITLE Direct Submission JOURNAL Submitted (17-JUN-1996) University of California, Biology, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U61077 BASE COUNT 354 a 222 c 180 g 208 t 4249 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uagAGGUU 661 (UGG-)U-CC U|GGCCU-UU CUA-UUAGCC -C-CUAG-UA |GG-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACUCCAGU GAAAA---UG C|CCU-Ugaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(a--auca u----)---- 1261 ---------- ---------- ---g--auc- auaAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACACC- -----(acac ---------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--CGA C|ACCUA-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUa----C-A 1501 GCA|GUG-AU AAGAAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCCA-U- AC-UAC---- -aauca---- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUUA-AUAG A-------ca uaCGGC|GUA AAACGUGUU- -aaaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------ac -uaaccacca aauaaa--gu -----|UAAA cuuaga-cug ----uGCU(G 2341 UAAAA)AGCU CCA------g acaaaaua-A AAA------- -----uacac -aAC(-GAAA 2401 -)GU|g---- ----acuuua aauaa----- ---------- ucuga-caAC ACGAU-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 A--GAUA-GC |C-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aua(caac)a a---C-GCUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-CC CUUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AGCCCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aaa- 3181 ca-)------ U-AGUAAGCA AAA-CUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----gcaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------G 3841 G-A-CU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- aua--)---- ---------- ---------- UAG-GAcauu 4021 ---------- ----uaaCGA --AUAUU-CC U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) C-AG-G--AA -u--GGAAG- -GAGGAUUUA 4141 G-U--aGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 cca----aua cacaauaaau caaucuuauu aaca-aaugu gua-caca-- -uauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGACAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.L.angol 5213 bp RNA RNA 20-MAR-1997 DEFINITION Mitochondrion Lissonycteris angolensis.; . ACCESSION U93063 KEYWORDS . SOURCE Mitochondrion Lissonycteris angolensis. ORGANISM Mitochondrion Lissonycteris angolensis. REFERENCE 1 (bases 1 to 1032) AUTHORS Hollar,L.J. and Springer,M.S. TITLE evolution and an endemic African clade Old World fruitbat phylogeny: evidence for convergent JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1032) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (11-MAR-1997) Biology, University of California - Riverside, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U93063 BASE COUNT 331 a 246 c 184 g 203 t 4249 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|AGCCU-UU CUA-UUGACU -C-UUAG-UA |GG-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACUCCAGU GAAGA---UG C|CCU-Ucaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(ac--caa c-c--)---- 1261 ---------- ---------- ---g--aua- a-gAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACACU- -----(acca c--------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--CGA C|ACCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCCA-U- AC-UAA---- -ccca----- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUUA-AUAG A-------ca caCGGC|GUA AAGCGUGUUc -aggaa---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------accc -ccccccccc cauaaa--gu -----|UAAA ucuaaG-CUA ----UGCC(G 2341 UAGAA)AGCU uua------g cucagaca-A AAA------- -----uaaac -cAC(-GAAG 2401 -)GU|g---- ----accuua gacac----- ---------- uucga-c-AC ACGAU-AGCU 2461 G-GGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-UGC- CCUAAA-CCU 2521 A--AGUA-GU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a uuu(aaac)a a---U-GCUA 2701 C-C|--C|GC C-AGAG-CAC UACUAGC(-- -AACA--)GC UUG--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AACCCUCGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(agc- 3181 ca-)------ C-AGUAAGCC AAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ucaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 G-G-UU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- aca--)---- ---------- ---------- UAG-AAcaca 4021 ---------- ------aCGA --AAUUU-UU C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) C-GA-A--AA -C--GGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 cca----aaa cacaaccaac uaacuucauu gaug-agugu aua-uaca-- -uacaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGAUAA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.N.robin 5213 bp RNA RNA 20-MAR-1997 DEFINITION Mitochondrion Nyctimene robinsoni.; . ACCESSION U93061 KEYWORDS . SOURCE Mitochondrion Nyctimene robinsoni. ORGANISM Mitochondrion Nyctimene robinsoni. REFERENCE 1 (bases 1 to 1029) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Old World fruitbat phylogeny: evidence for convergent evolution and an endemic African clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1029) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (11-MAR-1997) Biology, University of California - Riverside, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U93061 BASE COUNT 352 a 226 c 181 g 210 t 4244 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCU 661 (UGG-)U-CC U|GGCCU-UU CUA-UUAGCC -C-UUAG-UA |GG-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUUCCAGU GAAAA---UG C|CCU-Ugaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(a--acca u----)---- 1261 ---------- ---------- ---g--auc- auaAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACACC- -----(acac ---------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--UGA C|ACCUA-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCCA-U- AC-UAC---- -ccca----- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUUA-AUAG A-------ua uaCGGC|GUA AAACGUGUU- -aaaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------a -uaaacucca aauaaa--gu -----|UAAA auuagG-CUG ----UGCU(G 2341 UAAAA)AGCU CCA------g acaaaaug-A AAA------- -----uacac -aAC(-GAAA 2401 -)GU|g---- ----acuuua aaaua----- ---------- ucuga-caAC ACGAU-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 A--GAUA-GC |c-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aca(caac)a a---C-GCUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-CC CUUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AACCCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aac- 3181 ca-)------ U-AGUAAGCA AAA-CUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----guaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 G-G-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- aua--)---- ---------- ---------- UAG-AAcacu 4021 ---------- ---uuaaCGA --AUAUU-CC C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) C-AG-G--AA -u--GGAAG- -GAGGAUUUA 4141 G-u--aGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCC 4261 CUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 cca----aca cacaauuaau uaaaccuauu aaca-aaugu gca-caca-- -uauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGACAA AUCAAAGU-| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.atrat 5213 bp RNA RNA 20-MAR-1997 DEFINITION Mitochondrion Pteralopex atrata.; . ACCESSION U93069 KEYWORDS . SOURCE Mitochondrion Pteralopex atrata. ORGANISM Mitochondrion Pteralopex atrata. REFERENCE 1 (bases 1 to 1035) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Old World fruitbat phylogeny: evidence for convergent evolution and an endemic African clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1035) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (11-MAR-1997) Biology, University of California - Riverside, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U93069 BASE COUNT 362 a 222 c 174 g 209 t 4246 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCC-UU CUA-UUAGCC -C-UUAG-UA |AG-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCUCCGGU GAAAA---UG C|CCU-Ccaa --au-u---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--aauaa u----)---- 1261 ---------- ---------- ---a--auc- c-aGAGGAGC |--------- aGGUAUCA-- 1321 -AGCACACU- -----(acac ---------- ---------- ---------- ------)--- 1381 --AGU|---A GCUAA--UGA C|GCCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUa----C-A 1501 GCA|GUG-AC AAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCUA-U- AC-UAA---- -caacua--- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUUA-AUAG A-------ua uaCGGC|GUA AAACGUGUU- -aagga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----gacaa -cccaauacc aauaaa--gu -----|UAAA uccaaa-cua ----uGCC(G 2341 UAAAA)AGCU uua------g cuaagaua-A AAA------- -----uaaac -uAC(-GAAA 2401 -)GU|g---- ----acuuua aauaa----- ---------- uccga-ccAC ACGAU-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCC 2521 A--AAUA-GC |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a uua(caac)a a---U-GCUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AACCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CG AAC-|CCU(A --AAA)AGG- -----(aac- 3181 ca-)------ C-AGUAAGCA AAA-AUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aaaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-G-UU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a uaa--)---- ---------- ---------- CAG-AAcaca 4021 ---------- -----aaCGA --AAAUU-UU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-GG-A--AA au--AGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUGAGA(- auaga-ga-- --)GCUCAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 uca----aga uacaaacccc aaccau-auu aaca-cacgu aca-uaca-- -ugcaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GN- GCUUGGAUAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.admir 5213 bp RNA RNA 20-MAR-1997 DEFINITION Mitochondrion Pteropus admiralitatum.; . ACCESSION U93072 KEYWORDS . SOURCE Mitochondrion Pteropus admiralitatum. ORGANISM Mitochondrion Pteropus admiralitatum. REFERENCE 1 (bases 1 to 1035) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Old World fruitbat phylogeny: evidence for convergent evolution and an endemic African clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1035) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (11-MAR-1997) Biology, University of California - Riverside, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U93072 BASE COUNT 354 a 224 c 182 g 207 t 4246 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCC-UU CUA-UUAGCC -A-UCAG-UA |GG-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCGGU GAAAA---CG C|CCU-Uuua --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(a--ucag u----)---- 1261 ---------- ---------- ---g--aua- a-aAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACACU- -----(guac a--------- ---------- ---------- ------)--- 1381 --AGU|---A GCUAA--AGA C|ACCUC-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUa----C-A 1501 GCA|GUG-AC AAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCCA-U- AC-UGA---- -cccaua--- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUUA-AUAG A-------ca uaCGGC|GUA AAACGUGUU- -aagga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------aac -uauccaccc aauaaa--gu -----|UAAA ucuuagacua ----uGCU(G 2341 UAGAA)AGCu cua------g cccagaua-A AAA------- -----uaaac -cAC(-GAAG 2401 -)GU|g---- ----acuuua gacaa----- ---------- uccga-ucAC ACGAU-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 A--AGUA-GC |CU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(caac)g a---C-GCUA 2701 C-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AACUCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aaa- 3181 ca-)------ A-AGUAAGCA AAA-CCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----gaaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-G-UU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- aca--)---- ---------- ---------- UAG-AAuauc 4021 ---------- -----aaCGA --AAAUU-UU C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) C-GA-A--AA -u--AGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 uaa----aaa uacaaauacu caacccuauu aaua-aaugu aca-cgca-- -uauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGAUGA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.tem.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Pteropus temmincki. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Pteropus temmincki. ORGANISM Mitochondrion Pteropus temmincki. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M81138 DEFINITION Pteropus capestratus mitochondrion 12S rRNA gene. SOURCE Mitochondrion Pteropus capestratus (chromosome Mitochondrion Pteropus capestratus) DNA. ORGANISM Mitochondrion Pteropus capestratus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Chiroptera; Megachiroptera; Pteropodidae; Pteropodinae. REFERENCE 1 (bases 1 to 188) AUTHORS Mindell,D.P., Dick,C.W. and Baker,R.J. TITLE Phylogenetic relationships among megabats, microbats and primates JOURNAL Proc. Natl. Acad. Sci. U.S.A. 88, 10322-10326 (1991) BASE COUNT 61 a 50 c 38 g 39 t 5025 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGGUU 661 (UGG-)U-CC U|GGCCC-UU CUA-UUAGCC -a-ccag-ua |gg-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCGGU GAAGA---UG C|CCU-Uuua --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---auca a----)---- 1261 ---------- ---------- --cg--aua- a-aAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACACU- -----(guac a--------- ---------- ---------- ------)--- 1381 --AGU|---A GCUUA--AGA C|ACCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAC--)g--G AUA----C-A 1501 GCA|GUG-AC AAAAAUUAAG C~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ---~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(-~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~--~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ 2701 ~~~|~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ 2821 ~~~~~~~~~~ ~~~~)~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 (~~~~---~~ ~~-)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~|~~~ 3121 |~~|~~~~~~ |~~~~~~~~~ ~~~~~|~-~~ ~~~~|~~~(~ ~-~~~)~~~~ ~~~~~(~~~- 3181 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3241 ~~)<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~-~)~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~|~~~ ~~~------- -------~~~ 3841 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~>(~~~ ~~~-~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~-~(~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~-) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.tem.2 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Pteropus temmincki. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Pteropus temmincki. ORGANISM Mitochondrion Pteropus temmincki. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M81139 DEFINITION Pteropus capestratus mitochondrion 12S rRNA gene. SOURCE Mitochondrion Pteropus capestratus (chromosome Mitochondrion Pteropus capestratus) DNA. ORGANISM Mitochondrion Pteropus capestratus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Chiroptera; Megachiroptera; Pteropodidae; Pteropodinae. REFERENCE 1 (bases 1 to 536) AUTHORS Mindell,D.P., Dick,C.W. and Baker,R.J. TITLE Phylogenetic relationships among megabats, microbats and primates JOURNAL Proc. Natl. Acad. Sci. U.S.A. 88, 10322-10326 (1991) BASE COUNT 203 a 118 c 98 g 117 t 4677 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~--)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(-~~ ~~~~~~~-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUUA-AUAG A-------ua uacGGC|GUA AAACGUGUu- -aagga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a-au -cacccaccc aauaaa--gu -----|uaaa ucuUGG-GCu ---AUACC(G 2341 UAGAA)AGCu uua------G CCCA-gacaa aaa------- -----uaaac -cAC(-GAAG 2401 -)GU|g---- ----acuuua aacga----- ---------- ucuga-ccAC ACGAU-AGCU 2461 A-AGA---CU CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- c--------u 2521 a--agua-gc |cc|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(caac)g a---c-gcua 2701 c-u|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA G-ACCUCACC AACUCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aaa- 3181 ca-)------ a-aGUAAGAA AAA-Caua-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aaaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-G-UU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-gc a----)---- ---------- ---------- UAG-AAuauc 4021 a--------- ------ACGA --AAAUU-UU C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) C-GA-A--AA -U--AGAAG- -GAGGAUUUA 4141 G-U--AGUAA A~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.hypom 5213 bp RNA RNA 20-MAR-1997 DEFINITION Mitochondrion Pteropus hypomelanus.; . ACCESSION U93073 KEYWORDS . SOURCE Mitochondrion Pteropus hypomelanus. ORGANISM Mitochondrion Pteropus hypomelanus. REFERENCE 1 (bases 1 to 1035) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Old World fruitbat phylogeny: evidence for convergent evolution and an endemic African clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1035) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (11-MAR-1997) Biology, University of California - Riverside, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U93073 BASE COUNT 353 a 225 c 183 g 206 t 4246 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCC-UU CUA-UUAGCC -A-UCAG-UA |GG-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCGGU GAAAA---CG C|CCU-Uuua --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(a--ucag u----)---- 1261 ---------- ---------- ---g--aua- a-aAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACACU- -----(guac a--------- ---------- ---------- ------)--- 1381 --AGU|---A GCUAA--AGA C|ACCUC-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUa----C-A 1501 GCA|GUG-AC AAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCCA-U- AC-UGA---- -cccaua--- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUUA-AUAG A-------ca uaCGGC|GUA AAACGUGUU- -aagga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------aac -uauccaccc aauaaa--gu -----|UAAA ucuuagacua ----uGCU(G 2341 UAGAA)AGCu cua------g cccagaua-A AAA------- -----uaaac -cAC(-GAAG 2401 -)GU|g---- ----acuuua gacaa----- ---------- uccga-ucAC ACGAU-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 A--AGUA-GC |CU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(caac)g a---C-GCUA 2701 C-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AACUCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aaa- 3181 ca-)------ A-AGUAAGCA AAA-CCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----gaaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-G-UU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- aca--)---- ---------- ---------- UAG-AAcauc 4021 ---------- -----aaCGA --AAAUU-UU C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) C-GA-A--AA -u--AGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 uaa----aga uacaaauacu caacccuauu aaua-aaugu aca-cgca-- -uauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGAUGA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.ample 5213 bp RNA RNA 20-MAR-1997 DEFINITION Mitochondrion Rousettus amplexicaudatus.; . ACCESSION U93070 KEYWORDS . SOURCE Mitochondrion Rousettus amplexicaudatus. ORGANISM Mitochondrion Rousettus amplexicaudatus. REFERENCE 1 (bases 1 to 1039) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Old World fruitbat phylogeny: evidence for convergent evolution and an endemic African clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1039) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (11-MAR-1997) Biology, University of California - Riverside, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U93070 BASE COUNT 350 a 234 c 179 g 207 t 4243 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC C|AGCCU-UU CUA-UUAACU -C-UUAG-UA |GG-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUUCCAGU GAAAA---UG C|CCU-Uaaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(ac--cau --c--)---- 1261 ---------- ---------- ---g--auc- auaAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACACU- -----(auac ---------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--UAA C|ACCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUa----C-A 1501 GCA|GUG-AU AAAAAUUUAG C-CAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUCA-U- AC-UAA---- -ucauaa--- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUUA-AUAG A-------ca caCGGC|GUA AAACGUAUU- -aagga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------gcc -ccgcccacc aauaaa--gu -----|UAAA ucuaag-cua ----cGCC(G 2341 UAGAA)AGCc cca------g cucagaca-A AAA------- -----uaaac -cAC(-GAAA 2401 -)GU|g---- ----acuuua aaauga---- ---------- uccga-c-AU ACGAU-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCC 2521 A--AGUG-AU |AU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ------caau aau(uaac)a a---U-AUUA 2701 C-U|--C|GC C-AGAG-CAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AGCCCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AGA)AGG- -----(agc- 3181 ca-)------ C-AGUAAGCA AAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----gcaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-G-CU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- aca--)---- ---------- ---------- UAG-AAcaua 4021 ---------- -----aaCGA --AACUU-UU C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) C-GA-A--AA -C--GGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagca---- 4381 cca----aga uacaacuaau uaacccuauu gaca-aaugu aca-caca-- -uguaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGACAA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.nigre 5213 bp RNA RNA 20-MAR-1997 DEFINITION Mitochondrion Thoopterus nigrescens.; . ACCESSION U93067 KEYWORDS . SOURCE Mitochondrion Thoopterus nigrescens. ORGANISM Mitochondrion Thoopterus nigrescens. REFERENCE 1 (bases 1 to 1036) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Old World fruitbat phylogeny: evidence for convergent evolution and an endemic African clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1036) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (11-MAR-1997) Biology, University of California - Riverside, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U93067 BASE COUNT 353 a 228 c 178 g 209 t 4245 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC C|AGCCU-UU CUA-UUAACU -C-UUAG-UA |GA-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACACCGGU GAAAA---UG C|CCU-Uuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(ac--ua- -ac--)---- 1261 ---------- ---------- ---g--aca- a-aAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACACU- -----(aacc aacac----- ---------- ---------- ------)--- 1381 --AGU|---A GCUUA--CAA C|ACCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUa----C-A 1501 GCA|GUG-AU AAAAAUUGAG C-CAUGAAC( ---------- ----GAAA)G UUUGA-CUC| 1561 A|-GCCA-U- AC-UAA---- -uccua---- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUUA-AUAG A-------ca uaCGGC|GUA AAGCGUGUU- -aaaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------ga -ucacuacac aauaaa--gu -----|UAAA ucuaaggcua ----cGCU(G 2341 UAAAA)UGCc cua------g ccaagaca-A AAA------- -----uaaac -cAC(-GAAA 2401 -)GU|g---- ----acuuua aauua----- ---------- uccga-cuAC ACGAU-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 A--AAUA-GU |AA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aca(uaac)a a---U-ACUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AGCCCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aac- 3181 ca-)------ U-AGUAAGCA AAA-CCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ggaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 G-A-CU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- gca--)---- ---------- ---------- UAG-AAcaau 4021 ---------- -----caCGG --AAAUU-CU C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) C-GA-G--AG -u--GGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 uua----aaa uacauucaac caacccuauu -aua-acugu aca-uaca-- -uauua---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGACAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.H.galer 5213 bp RNA RNA 20-MAR-1997 DEFINITION Mitochondrion Hipposideros galeritus.; . ACCESSION U93054 KEYWORDS . SOURCE Mitochondrion Hipposideros galeritus. ORGANISM Mitochondrion Hipposideros galeritus. REFERENCE 1 (bases 1 to 1041) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Old World fruitbat phylogeny: evidence for convergent evolution and an endemic African clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1041) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (11-MAR-1997) Biology, University of California - Riverside, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U93054 BASE COUNT 338 a 239 c 188 g 206 t 4242 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cacAGGUU 661 (UGG-)U-CC U|GGCCU-UU CCA-UUAGUU -C-UAGG-UA |GG-AC--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GAGAA---UG C|CCU-Ccaa --gu-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(ac-acu- -u---)---- 1261 ---------- ---------- ---g--aua- a-aAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACACU- -----(acca ---------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--UGA C|GCCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUCA-U- AC-CUA---- -uacccuca- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUGG A-------ac caCGGC|GUA AAGCGUGUU- -uaaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -gagccauaa aauaag--au -----|UAAA uccuga-cua ----aGCU(G 2341 UAAAA)AGCC CUA------g ucaaaaua-A AAA------- -----uaaac -cAC(-GAAA 2401 -)GU|a---- ----aucuua cagacc---- ---------- uccga-gcAC ACGAC-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCU 2521 A--AAUA-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a cca(caac)a a---G-AUUA 2701 U-U|--C|GC C-AGAG-UAC UACCGGC(-- -AACA--)GC CUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-C |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AGUUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC CU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(agc- 3181 ua-)------ U-AGUAAGCA CAA-ACAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aagac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU UAU------- ---------G 3841 A-A-CU-GG- AA-AGA--GA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g cca--)---- ---------- ---------- AAG-AAcacu 4021 ---caauc-a auca-caCGA --AGCCC-CC C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAA---) --AU-G--GG -U--CGAAG- -GUGGAUUUA 4141 G-U--AGUAA GCCgGAGA(- auaga-ga-- --)GCUCaGC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaua---- 4381 uga----uag uaugaacuaa accu---auu aaa--accau aca-aau--- -uauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGAUAC AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.lyra 5213 bp RNA RNA 19-AUG-1998 DEFINITION Mitochondrion Megaderma lyra.; . ACCESSION AF0695 8 KEYWORDS . SOURCE Mitochondrion Megaderma lyra. ORGANISM Mitochondrion Megaderma lyra. REFERENCE 1 (bases 1 to 2597) AUTHORS ., Cleven,G.C., Kao,D. and Springer,M.S. Stanhope,M.J., Waddell,V.G., Madsen,O., de Jong,W., Hedges,S.B TITLE for a new order of endemic African insectivore mammals Molecular evidence for multiple origins of Insectivora and JOURNAL Proc. Natl. Acad. Sci. U.S.A. 95 (17), 9967-9972 (1998) STANDARD No information REFERENCE 2 (bases 1 to 2597) AUTHORS Stanhope,M.J., Waddell,V.G., Madsen,O., de Jong,W., Cleven,G.C., Kao,D. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (01-JUN-1998) Biology, University of California, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF069538 BASE COUNT 329 a 242 c 198 g 200 t 4244 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cauAGGUU 661 (UGG-)U-CC U|GGCCU-UU UCA-UUGACU -C-CGAG-CA |AG-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCAGU GAGAG---UG C|CCU-Cuaa --gu-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(g--ucaa c----)---- 1261 ---------- ---------- ---g--acu- a-aAAGGAGC |--------- gGGCAUCA-- 1321 -AGUACACU- -----(acca ---------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--CGA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG CAa----C-A 1501 GCA|GUG-AC AAAACUUAAG C-AAUGAAC( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-GCUA-U- GC-UCU---- -aauaacaa- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAU-CCA-- 1981 AGCCA-AUGA A-------ag caCGGC|GUA AGGCGUGUU- -uaagg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -aaucacaaa aauaaa--gu -----|UAAA uccugg-cua ----aGCC(G 2341 UAAAA)AGCA CCa------g ccagaaug-A AAG------- -----uauac -uAC(-GAAA 2401 -)GU-g---- ----acuuua uagcu----- ---------- ccuga-acAC ACGAC-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CAU 2521 A--GAUU-AC |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -uu(uaac)a a---u-cuaA 2701 U-U|--C|GC C-AGAG-UAC UACGGAC(-- -AACA--)GU CUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-UC CCUCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA G-ACCUCACC AGUCCUUGCU ---------- ---------- 2881 (-------aa uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC CU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aau- 3181 ca-)------ C-AGUAAGCG CAA-ACAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caaac- 3781 ---------G CAAAAA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 G-A-CU-GG- AA-AGA--GA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g ccc--)---- ---------- ---------- AAG-AAcaua 4021 accaagua-- ------aCgg --AUACU-CU U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAGu--) C-AA-G--AG -U--GUAAG- -GAGGAUUUA 4141 G-U--AGUAA G-CCAAGA(- acaga-ga-- --)GCUUGAC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 aca----aag cacagauaau acccuauuua uaaa--guac uag-aa---- -ugcaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGAUAU AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.sinal 5213 bp RNA RNA 20-MAR-1997 DEFINITION Mitochondrion Molossus sinaloae.; . ACCESSION U93053 KEYWORDS . SOURCE Mitochondrion Molossus sinaloae. ORGANISM Mitochondrion Molossus sinaloae. REFERENCE 1 (bases 1 to 1033) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Old World fruitbat phylogeny: evidence for convergent evolution and an endemic African clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1033) AUTHORS Hollar,L.J. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (11-MAR-1997) Biology, University of California - Riverside, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U93053 BASE COUNT 360 a 207 c 171 g 226 t 4249 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uauAGGUU 661 (UGG-)U-CC U|AGCCU-UU CUA-UUAAUU -G-UUAA-UA |AA-CU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCGCUCCAGU GAGAA---UG C|CCU-Cuaa --gu-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(a--uaaa u----)---- 1261 ---------- ---------- ---g--aca- a-aAAGGAGC |--------- aGGCAUCA-- 1321 -AGCACACU- -----(aacc ---------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--AAA C|GCCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AU-UAA---- -uaaucua-- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUAG A-------ua ucCGGC|GUA AAGCGUGUU- -uaaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------a -aauaaccaa aauaaa--ga -----|UAAA uauuaG-CUA ----AGCU(G 2341 UAAAA)AGCC UCa------g cccuca-u-A AAA------- -----uaaac -aAC(-GAAA 2401 -)GU|g---- ----ucuuua gaaca----- ---------- ucuga-acAC ACGAC-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CUU 2521 A--AAAA-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a aca(-aac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AAAA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AACUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(auu- 3181 ua-)------ U-AGUAAGCA UAA-ACAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaagc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU AAU------- ---------G 3841 G-G-UU-GG- AA-AGA--AA -UGGGCUACA UU--UCCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- cua--)---- ---------- ---------- CAG-GAcaau 4021 ---------- --uau-aCGA --AAAUC-UC C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) C-AG-A--GA -U--AGAAG- -GUGGAUUUA 4141 G-C--AGUAA G-UUAAGA(- auaga-ga-- --)GCUUAAC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 uug----cua auaauaauau uaacuu-aua aacu-aaaaa uua-agcc-- -uauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGACAA CC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.cav.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Brachyphylla cavernarum. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Brachyphylla cavernarum. ORGANISM Mitochondrion Brachyphylla cavernarum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M81136 DEFINITION Brachphylla cavernarum mitochondrion 12S rRNA gene. SOURCE Mitochondrion Brachyphylla cavernaru (chromosome Mitochondrion Brachyphylla cavernaru) DNA. ORGANISM Mitochondrion Brachyphylla cavernaru Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Chiroptera; Microchiroptera; Phyllostomatidae. REFERENCE 1 (bases 1 to 190) AUTHORS Mindell,D.P., Dick,C.W. and Baker,R.J. TITLE Phylogenetic relationships among megabats, microbats and primates JOURNAL Proc. Natl. Acad. Sci. U.S.A. 88, 10322-10326 (1991) BASE COUNT 64 a 54 c 34 g 38 t 5023 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---auAGGUU 661 (UGG-)U-CC C|AGCCU-UU CUA-UUAGUU -G-UAAA-CA |AA-AC--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUCCCAGU GAGAA---UG C|CCU-Auaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-c-guac caac-)---- 1261 ---------- ---------- ---g--aua- u-aAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACACC- -----(acua ---------- ---------- ---------- ------)--- 1381 --GGU|---A GCUCA--CAA C|GCCUU-GC --|------- (-uca--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAC--)g--G AAA----C-A 1501 GCA|GUG-AC AAAAAUUCAG C~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ 2701 ~~~|~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ 2821 ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 (~~~~---~~ ~~-)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~|~~~ 3121 |~~|~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~(~ ~-~~~)~~~~ ~~~~~(~~~- 3181 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3241 ~~)<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~-~)~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~|~~~ ~~~------- -------~~~ 3841 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~>(~~~ ~~~-~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~-~(~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.B.cav.2 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Brachyphylla cavernarum. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Brachyphylla cavernarum. ORGANISM Mitochondrion Brachyphylla cavernarum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M81137 DEFINITION Brachyphyllum cavernarum mitochondrion 12S rRNA gene. SOURCE Mitochondrion Brachyphylla cavernaru (chromosome Mitochondrion Brachyphylla cavernaru) DNA. ORGANISM Mitochondrion Brachyphylla cavernaru Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Chiroptera; Microchiroptera; Phyllostomatidae. REFERENCE 1 (bases 1 to 550) AUTHORS Mindell,D.P., Dick,C.W. and Baker,R.J. TITLE Phylogenetic relationships among megabats, microbats and primates JOURNAL Proc. Natl. Acad. Sci. U.S.A. 88, 10322-10326 (1991) BASE COUNT 196 a 132 c 96 g 126 t 4663 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~--)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(-~~ ~~~~~~~-GC -GGU-CA)-U ACGAUU|--- -ACC-CUA-- 1981 AUUAA-UAGA U--------a uacGGC|GUA AAGCGUGUu- -uagga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -cccuaaaac aauaaa--gc -----|caaa cuuUAG-CUA ----CGCU(G 2341 UAAAA)AGCc ac-------A GCUA-cug-u aag------- ----ccccau -uAC(-GAAA 2401 -)GU|a---- ----acuuua aauaa----- ---------- uccga-auAC ACGAU-AGCU 2461 A-AGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CUU 2521 A--AAGA-GU |CC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- cca(uaac)a a---G-ACCC 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -CAAA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AACCCUUGCC ---------- ---------- 2881 (-------aa cu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aga- 3181 ca-)------ c-aGUAAGCU CAA-CUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---aaaaau- 3781 ---------G CAAAAA-CGU U-AGGUCAAG G|UGUA|GCU UAU------- ---------G 3841 G-G-UU-GG- AA-AGA--AA -UGGGCUACA UU--UCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-cu ua---)---- ---------- ---------- UAG-GAuaca 4021 caucuc---a uuaa--AGCA --AAGCC-CU U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) C-AA-G--AG -C--UAAAG- -GUGGAUUUA 4141 G-C--AGUAA A~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.jamai 5213 bp RNA RNA 20-JAN-1999 DEFINITION Mitochondrion Artibeus jamaicensis.; . ACCESSION AF0613 0 KEYWORDS . SOURCE Mitochondrion Artibeus jamaicensis. ORGANISM Mitochondrion Artibeus jamaicensis. REFERENCE 1 (bases 1 to 16651) AUTHORS Pumo,D.E., Finamore,P.S., Franek,W.R., Phillips,C.J., Tarzami ,S. and Balzarano,D. TITLE relationships of bats to other eutherian mammals Complete mitochondrial genome of a neotropical fruit bat, Artibeus jamaicensis, and a new hypothesis of the JOURNAL J. Mol. Evol. 47 (6), 709-717 (1998) STANDARD No information REFERENCE 2 (bases 1 to 16651) AUTHORS Pumo,D.E., Finamore,P.S., Franek,W.R., Phillips,C.J., Tarzami,S. and Balzarano,D. TITLE Direct Submission JOURNAL Submitted (23-APR-1998) Biology, Hofstra University, Hempstead, NY 11549-1140, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF061340 BASE COUNT 323 a 230 c 181 g 230 t 4249 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uauAGGUU 661 (UGG-)U-CC C|AGCCC-UU CUA-UUGGCU -a-cUAG-CA |AA-AC--UA -CAC-A-UGC 721 -A-gu----- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCUUCCAGU GAGA----UG C|CCA-U-aa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(a---cca ugu--)---- 1261 ---------- ---------- ---g--aua- --aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACACU- -----(a-uc ca-------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--UAA C|GCCUU-GC --|------- (-uca--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- GC-UUA---- -cuaa----- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-GC AGGGACG-GC -GGU-CA)-U -CGAUU|--- -AAC-CCU-- 1981 AGUCA-AUAG A-------uu caCGGC|GUA AAACGUGUU- -uaagg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -aacacuuuu -auaaa--gu -----|CAAA CUCUAG-CUA ----CGCU(G 2341 UAAAA)AGCU AUA------g cuacug---U AAG------- ----cccuaa -cGC(-GAAA 2401 -)GU|a---- ----acuuua aaaca----- ---------- ccuga-auAC ACGAC-AGCU 2461 A-AGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 A--AAGA-GU |C-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------c ucc(uaac)a a---G-ACUC 2701 U-U|--C|GC CaAGAG-UAC UACUAGC(-- -CAAA--)GC UUA--AAACU CAAGGGAC-U 2761 UG|GCGGUG- CU-CAUA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC AACCCUUGUC ---------- ---------- 2881 (-------aa cu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --AAA)AAG- -----(aac- 3181 ug-)------ U-AGUAAGCU CAA-UCAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aauac- 3781 ---------G CGAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 G-G-UU-GG- AA-AGA--AA -UGGGCUACA UU--UCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uac--)---- ---------- ---------- UAG-GAuauu 4021 acccucuuua -----uACGA --AAGUC-CC C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-AA-G--GA -C--UAAAG- -GUGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-gu-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaua---- 4381 uau----gau ggua-cuaau uaacccuauu accacu--ua ccu-uaac-- -uauua---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGAUAA CC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.E.fuscu 5213 bp RNA RNA 02-SEP-1996 DEFINITION Mitochondrion Eptesicus fuscus.; . ACCESSION U61082 KEYWORDS . SOURCE Mitochondrion Eptesicus fuscus. ORGANISM Mitochondrion Eptesicus fuscus. REFERENCE 1 (bases 1 to 1025) AUTHORS Springer,M.S. and Douzery,E. TITLE Secondary structure and patterns of evolution among mammalian mitochondrial 12S rRNA molecules JOURNAL J. Mol. Evol. 43 (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 1025) AUTHORS Springer,M.S. TITLE Direct Submission JOURNAL Submitted (17-JUN-1996) University of California, Biology, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U61082 BASE COUNT 353 a 212 c 180 g 213 t 4255 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cauAGGUU 661 (UGG-)U-CC U|GGCCU-UU CUA-UUAGUU -G-UUAA-UA |AA-UU--UA -CAC-A-UGC 721 -AAGa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCGCCCCUGU GAGAA---UG C|CCU-Cua- --cg-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-cauuaa uug--)---- 1261 ---------- ---------- ---g--cau- --aaAGGAGC |--------- uGGUAUCA-- 1321 -AGCACACU- -----(aaaa ---------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--CAA C|ACCUU-GC --|------- (-uca--)-- -------GC| 1441 CACC------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AC AAAAAUUAAG C-AAUAGAC( ---------- ----GAAA)G UCUGA-CUA| 1561 A|-GUUA-U- AU-UAU---- -cca------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGACU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AGA-CCA-- 1981 AACUA-AUAG A-------ua uuCGGC|GUA AAGGGUGUU- -uuaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------aau -caaacaauu aauaaa--gu -----|UAAA cccuaa-cua ----aGCU(G 2341 UAAAA)AGCc cua------g uuaccg-u-A AAA------- -----caaau -aAC(-GAAA 2401 -)GU|a---- ----acuuua aaaaa----- ---------- ucuga-cuAC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CAC 2521 A--GAAG-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aua(-aac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-UAC UACCAGC(-- -AAGG--)GC UAG--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCUUAAA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA G-ACCUCACC AACCCUUGCC ---------- ---------- 2881 (-------aa au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC UUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aaa- 3181 aa-)------ C-AGUAAGCA UAA-ACAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 G-G-UU-GG- AA-AGA--AA -UGGGCUACA UU--CCUCG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- gac--)---- ---------- ---------- CGA-GGuaau 4021 ---------- -auuuuaCGA --AAACC-UA U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAU---) C-AA-C--AG -U--CAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-gu-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 AUGAGG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagcg---- 4381 aag----aua uaaaauaaua ucuaaauaua -----aggua uca--gcc-- -cgcaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGACAA CA-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (19)-Dermo 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.C.varie 5213 bp RNA RNA 16-DEC-1997 DEFINITION Mitochondrion Cynocephalus variegatus.; . ACCESSION AF0380 8 KEYWORDS . SOURCE Mitochondrion Cynocephalus variegatus. ORGANISM Mitochondrion Cynocephalus variegatus. REFERENCE 1 (bases 1 to 964) AUTHORS Douzery,E. and Catzeflis,F.M. Springer,M.S., Burk,A., Metcalf,A., Cleven,G.C., Lavergne,A., TITLE evidence for rate acceleration in proboscideans Rates of 12S rRNA nucleotide substitution in mammals with JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 964) AUTHORS Springer,M.S., Burk,A., Metcalf,A., Cleven,G.C., Lavergne, A., Douzery,E. and Catzeflis,F.M. TITLE Direct Submission JOURNAL Submitted (10-DEC-1997) Biology, University of California, 1354 Spieth, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038018 BASE COUNT 357 a 245 c 162 g 200 t 4249 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aacAGGUU 661 (UGG-)U-CC U|AGCCU-UU UUA-UUAAUU -A-UCAG-UA |AA-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUCCCCGU GAAAA---CG C|CCU-cuaa --au-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---acaa -----)---- 1261 ---------- ---------- --ua--auc- auaAAGGAGC |--------- AGGUAUCA-- 1321 -AGCACACC- -----(aacu a--------- ---------- ---------- ------)--- 1381 --GGU|---A GCUCA--UAA C|ACCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--G- UUA----C-A 1501 GCA|GUG-AU AAAAAUUUAG C-AAUGAAC( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-GUUA-U- AC-UAA---u uua------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGAUC|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -GAU-CCA-- 1981 AACAA-AUAA A--------a uucGGC|GUA AAGCGUGUUU -A-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------a uaaaca-aca aauaaa--au -----|UAAA CCUUAC-CUA ----AACU(G 2341 UAAAA)AGCC A--------u agauaaaggu aaa------- ----auaauc -cAC(-GAAA 2401 -)GU|g---- ----acuuua ---cuaauaa ---------- ucu-GAAUAC ACGAC-AGUU 2461 G-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AAC- CACAAA-CCU 2521 A--AGCA-GC |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- auc(aaau)a a---A-ACUG 2701 C-U|--C|GC C-AGAG-UAC UACCAGC(-- -AACG--)GC CCA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-CC CCCCUAGA|G GAGUCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUUACC ACCUCUUGCC ---------- ---------- 2881 (-------aa cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCC(U --CCA)GGG- -----(uac- 3181 aa-)------ A-AGUAAGCC CAA-GAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ccac-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGCA|GCC CAU------- ---------G 3841 A-G-AU-GG- AA-GAA---A -UGGACUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a uc---)---- ---------- ---------- CAG-AAcaau 4021 -uuaccc--- ------ACGA --CAACC-UU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAa-c-) U-GA-A--GG -C--CAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUCAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AAA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaauaacac 4381 cgcag-acaa accuuuacca gcucugcaac aaaccaaccu a--------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-U GUA-CU(AGA 4621 -A)AGU-GC- ACUUGGACAC AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (19)-Edent 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.B.trida 5213 bp RNA RNA 16-DEC-1997 DEFINITION Mitochondrion Bradypus tridactylus.; . ACCESSION AF0380 2 KEYWORDS . SOURCE Mitochondrion Bradypus tridactylus. ORGANISM Mitochondrion Bradypus tridactylus. REFERENCE 1 (bases 1 to 1035) AUTHORS Douzery,E. and Catzeflis,F.M. Springer,M.S., Burk,A., Metcalf,A., Cleven,G.C., Lavergne,A., TITLE evidence for rate acceleration in proboscideans Rates of 12S rRNA nucleotide substitution in mammals with JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1035) AUTHORS Springer,M.S., Burk,A., Metcalf,A., Cleven,G.C., Lavergne, A., Douzery,E. and Catzeflis,F.M. TITLE Direct Submission JOURNAL Submitted (10-DEC-1997) Biology, University of California, 1354 Spieth, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038022 BASE COUNT 343 a 259 c 172 g 194 t 4245 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cacAGCUU 661 (UGG-)U-CC U|GACCU-UA CUA-UUAGUC -C-UCAG-CA |AA-CU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACUCCAGU GAAAA---UG C|CCU-uua- --gu-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----ccc -----)---- 1261 ---------- ---------- -ccg--acc- a-aAAGGAGC |--------- aGGUAUCA-- 1321 -GGCCCAC-- -----(aaac ccgau----- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--CAA C|ACCUU-GC --|------- (--uag-)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCU--( CACG-)--GG ACA----C-A 1501 GCA|GUG-AC AAAAAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUU| 1561 A|-GUUA-U- GC-UAAC--- -acccaa--- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUAU C--------u accGGC|GUA AAAUGUGUUU -A-gga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -uuucagaac aauaaa--gu -----|UCAA CCGAAG-CUA ----aGCC(G 2341 UAAAA)AGCU AC-------A GCCA-AAAua aaA------- ----a-ccuc -aAC(-GAAA 2401 -)GU|g---- ----acuuua gcaaa----- ---------- ucc-gaauAC ACUAU-AGCU 2461 A-GGA---UU CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-CCA 2521 A--gaca-cu |u-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a acc(aaac)c a---a-agUG 2701 U-C|--U|GC C-AGAG-UAC UACUAGC(-- -AAUA--)GC UUG--AAACU CAAAGGAC-U 2761 UG|ACGGUG- CUUCACA-UC CCUCUAGA|G GAACCUGU-C |CUAUA--AU CG(ACGAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACCCCUUGCC ---------- ---------- 2881 (-------aa ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UC-CA|G-CA AAC-|CUU(G --AAA)AAG- -----(cac- 3181 ca-)------ C-AGUAAGCA CAA-UUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aaugc- 3781 ---------A UAAAUA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-GU-GG- GA-AGA--GA -UGGGUUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- AAG-AAaacc 4021 c--------- ------ACGG --AAACU-UC U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAC-ua) C-AA-A--AG -C--CAAAG- -GAGGAUUUA 4141 G-A--AGUAA C-UUAAGA(- auaga-ga-- --)GCUUAAC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CU-cgGGCC 4261 AUGAAG-CA- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aauccacca 4381 aacaa-ccaa aaaccau(-- -auu)accca cccauacggu acacaauccu a--------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAAua auc------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.villo 5213 bp RNA RNA 02-SEP-1996 DEFINITION Mitochondrion Chaetophractus villosus.; . ACCESSION U61080 KEYWORDS . SOURCE Mitochondrion Chaetophractus villosus. ORGANISM Mitochondrion Chaetophractus villosus. REFERENCE 1 (bases 1 to 1038) AUTHORS Springer,M.S. and Douzery,E. TITLE Secondary structure and patterns of evolution among mammalian mitochondrial 12S rRNA molecules JOURNAL J. Mol. Evol. 43 (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 1038) AUTHORS Springer,M.S. TITLE Direct Submission JOURNAL Submitted (17-JUN-1996) University of California, Biology, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U61080 BASE COUNT 354 a 233 c 165 g 219 t 4242 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cacAGAUC 661 (UGG-)U-CC U|AGUCU-UA CUG-UUAAUU -C-AUAG-CA |AA-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUCCCAGU GAGAA---UG C|CCU-Cuag --uu-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uuaca cc---)---- 1261 ---------- ---------- -uag--acc- a-aAAGGAGC |--------- GAGCAUCA-- 1321 -AGCACAC-- -----(uaaa cacuauua-- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--CAA C|GCUUU-GC --|------- (--uca-)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUAAGC( ---------- ----GAAA)G CUUGA-CUA| 1561 A|-AUUA-U- GC-UACCACC ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- --------ua GGGUU|-GGU 1921 -AAA-U---A UCGU-G(-CC AGCAACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-ACAG U--------c cccGGC|GUA AAGCGUGUUU -A-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- -----uccua 2161 ucac------ ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -------acc uauaaa--gu -----|UAAA UUCUUA-CUA ----cGCU(G 2341 UAAAA)AGCC AC-------A GUAA-AAAca aaA------- ----auaccc -cAC(-GAAA 2401 -)GU|g---- ----acuuua auaaa----- ---------- ucu-GAAUAC ACGAC-AGCU 2461 A-GGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CAUAAA-CCA 2521 A--aaca-au |u-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(aaac)a a---a-acUG 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CUUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGUUA C-ACCUAACC ACCCCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA GAC-|CCU(A --ACA)AGG- -----(aac- 3181 ca-)------ A-AGUGAGCA UAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uaac- 3781 ---------A CAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa gu---)---- ---------- ---------- UAG-AAuac- 4021 ---------- ----ccACGA --AAACC-UU A-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAUaa-) U-UA-A--GC -A---UAAG- -GCGGAUUUA 4141 G-U--AGUAA G-CCAAGA(- auaga-ga-- --)GCUUGAC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUA--GGCC 4261 AUAAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aauuaucc- 4381 aagcc-cuuc aacaaau(uu aacc)auuua --c-ucagca aa-c-auaug a--------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAAG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GUUUGGAcaa u--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.D.nov.1 5213 bp RNA RNA 09-JUL-1997 DEFINITION Mitochondrion Dasypus novemcinctus.; 12S rRNA; 16S rRNA; ATPase 6; ATPase 8; COI gene; COII gene; COIII gene; complete genome; control region; cytochrome b; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; origin of light-strand replication; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. ACCESSION Y11832 KEYWORDS 12S rRNA; 16S rRNA; ATPase 6; ATPase 8; COI gene; COII gene; COIII gene; complete genome; control region; cytochrome b; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; origin of light-strand replication; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Mitochondrion Dasypus novemcinctus. ORGANISM Mitochondrion Dasypus novemcinctus. REFERENCE 1 (bases 1 to 17056) AUTHORS Arnason,U., Gullberg,A. and Janke,A. TITLE Phylogenetic analysis of mitochondrial DNA suggest a sister group relationship between Xenarthra (Edentata) and Ferungulates JOURNAL Mol. Biol. Evol. 14, 762-768 (1997) STANDARD No information REFERENCE 2 (bases 1 to 17056) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (12-MAR-1997) U. Arnason, Dept of Genetics, Division Evolutionary Molec. Systematics, University of Lund, Solvegatan 29, S-223 62 LUND, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y11832 BASE COUNT 350 a 222 c 170 g 224 t 4247 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cacAGGUC 661 (UGG-)U-CC U|AGCCU-UA CUA-UUAAUU -C-AUAA-CA |AA-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACACCAGU GAGAA---UG C|CCU-Cuaa --cu-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----uua -----)---- 1261 ---------- ---------- -uag--auc- a-aAAGGAGC |--------- AAGCAUCA-- 1321 -AGUACAC-- -----(acag cccuuaca-- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UAA C|GCUUU-GC --|------- (--uca-)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUAAGC( ---------- ----GAAA)G CUUGA-CUA| 1561 A|-GUUA-U- GU-UAUUA-- --uaa----- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCAACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAG U--------u aucGGC|GUA AAGCGUGUUU -A-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -caccuagac aauaga--gu -----|UAAA CCCUUA-CUA ----cGCU(G 2341 UAAAA)AGCC UU-------A GUAG-GACca uaA------- ---acccuuc -aAC(-GAAA 2401 -)GU|g---- ----acucua auuua----- ---------- ucu-gacuAC ACGAU-AGCU 2461 A-GGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-CUA 2521 A--aaca-gu |u-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- cac(aaac)a a---a-acUG 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CUUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUCACC ACCCCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA GAC-|CCU(A --GUA)AGG- -----(cac- 3181 ca-)------ C-AGUGAGCA CAA-UAAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----auac- 3781 ---------A UAAAGA-CGU U-AGGUCAAG G|UGUA|GCU UAU------- ---------G 3841 G-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au aaa--)---- ---------- ---------- GAG-CAaau- 4021 ---------- ------ACAA --AAAAC-UU A-A(------ ---------- ---------- 4081 ---------- ---------- UGAAACaau) U-UA-A--GA -C---UAAG- -GUGGAUUUA 4141 G-U--AGUAA G-CUAAAA(- auaga-ga-- --)GUUUAGC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCA--GGCC 4261 AUAAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aauuaua-a 4381 gcgcc-acau aaacuaa(aa caca)uuaa- uucaguagca a--cuauaua a--------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAAG-AGA-C AAGUCGUAAC AAGGUAAA-C AUA-CU(GGA 4621 -A)AGU-GU- GUUUGGAUaa c--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.D.nov.2 5213 bp RNA RNA 12-SEP-1996 DEFINITION Mitochondrion Dasypus novemcinctus.; . ACCESSION U67286 KEYWORDS . SOURCE Mitochondrion Dasypus novemcinctus. ORGANISM Mitochondrion Dasypus novemcinctus. REFERENCE 1 (bases 1 to 769) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE evidence from the mitochondrial 12SrRNA gene Higher level systematics of rodents (Mammalia, Rodentia): JOURNAL J. Mammal. Evol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 769) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE Direct Submission JOURNAL Submitted (20-AUG-1996) Wildlife and Fisheries, Texas A&M University, 210 Nagle Hall, College Station, TX 77843-2258, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U67286 BASE COUNT 274 a 174 c 141 g 180 t 4444 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~-~-~GC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACACCAGU GAGAA---UG C|CCU-Cuaa --cu-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----uua -----)---- 1261 ---------- ---------- -uag--auc- a-aAAGGAGC |--------- AAGCAUCA-- 1321 -AGUACAC-- -----(acag cccuuaca-- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UAA C|GCUUU-GC --|------- (--uca-)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUAAGC( ---------- ----GAAA)G CUUGA-CUA| 1561 A|-GUUA-U- GU-UAUUA-- --uaa----- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCAACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAG U--------u aucGGC|GUA AAGCGUGUUU -A-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -caccuagac aauaga--gu -----|UAAA CCCUUA-CUA ----cGCU(G 2341 UAAAA)AGCC UU-------A GUAG-GACca uaA------- ---acccuuc -aAC(-GAAA 2401 -)GU|g---- ----acucua auuua----- ---------- ucu-gacuAC ACGAU-AGCU 2461 A-GGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-CUA 2521 A--aaca-gu |u-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- cac(aaac)a a---a-acUG 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CUUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUCACC ACCCCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA GAC-|CCU(A --GUA)AGG- -----(cac- 3181 ca-)------ C-AGUGAGCA CAA-UAAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----auac- 3781 ---------A UAAAGA-CGU U-AGGUCAAG G|UGUA|GCU UAU------- ---------G 3841 G-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au aaa--)---- ---------- ---------- GAG-CAaau- 4021 ---------- ------ACAA --AAAAC-UU A-A(------ ---------- ---------- 4081 ---------- ---------- UGAAACaau) U-UA-A--GA -C---UAAG- -GUGGAUUUA 4141 G-U--AGUAA G-CUAAAA(- auaga-ga-- --)GUUUAGC U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (19)-Hyrac 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.D.dorsa 5213 bp RNA RNA 11-JAN-191 DEFINITION Dendrohydrax dorsalis. ACCESSION No information KEYWORDS No information. SOURCE Dendrohydrax dorsalis. ORGANISM Dendrohydrax dorsalis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X86945 LOCUS DD12SRRNA 945 bp DNA UNA 01-SEP-1995 DEFINITION D.dorsalis mitochondrial 12S rRNA gene. ACCESSION X86945 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Dendrohydrax dorsalis. ORGANISM Mitochondrion Dendrohydrax dorsalis Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Hyracoidea; Procaviidae; Dendrohydrax. REFERENCE 1 (bases 1 to 945) AUTHORS Douzery,E. and Catzeflis,F.M. TITLE Molecular evolution of the mitochondrial 12S rRNA in Ungulata (Mammalia) JOURNAL Unpublished REFERENCE 2 (bases 1 to 945) AUTHORS Douzery,E. TITLE Direct Submission JOURNAL Submitted (03-MAY-1995) to the EMBL/GenBank/DDBJ databases. E. Douzery, Laboratoire de Paleontologie, URA 327 CNRS, Inst.d. Sciences de l'Evolution CC064, Univ.Montpellier 2, Place E. Bataillon, F - 34095 Montpellier, FRANCE COMMENT NCBI gi: 974807 FEATURES Location/Qualifiers source 1..945 /organism="Dendrohydrax dorsalis" /mitochondrion /isolate="T512 Extr. 4668" rRNA 1..945 /gene="12S rRNA" /product="12S ribosomal RNA" BASE COUNT 348 a 229 c 162 g 206 t ORIGIN BASE COUNT 348 a 229 c 162 g 206 t 4268 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --gaaAGGCU 661 (UGG-)U-CC U|AGCCU-UC UUA-UUAAUU -A-CUAG-UA |AA-CU--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GAAAA---CG C|CCU-Ucca --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--aacuu -----)---- 1261 ---------- ---------- ---g--auc- g-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACAC-- -----(auua ---------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--CAA C|ACCUU-GC --|------- (-aua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUA-AU AAAAAUUUAG C-AAUUAAC( ---------- ----GAAA)G UUAGA-CUA| 1561 A|-GUUA-U- AC-UAUuua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUAA G--------c acCGGC|GUA AAGCAUGUUU -A-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------c-ac --aaccccaa auuaaa--gc -----|CAAA UCCAAU-UCA ----AGCU(G 2341 UAAAA)AGCC AA-------C AAUU-gcaaU AAA------- ----auaacc -aAC(-GAAA 2401 -)GU|g---- ----gcuuua uaaua----- ---------- ucu-gaacAC AUGAU-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCC 2521 U--AGCA-CC |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(uaac)c a---A-GAUG 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AAUA--)GC UAA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-CC CACCUAGU|G GAGCCUGU-C |CCAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACCAUUUGCC ---------- ---------- 2881 (-------ua cu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(agg- 3181 ca-)------ A-AGUAAGCA CAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----gcuc- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|GCU AAU------- ---------A 3841 U-G-GU-GG- CC-CAA--GA -UGGGCUACA UU--CUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ac---)---- ---------- ---------- AAA-AGcaau 4021 ---------- ------ACGA --AUGUU-AC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-U--AA -C--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- uuaa--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaguaccca 4381 acuua-a-cc aa(-uacc)u aaacacacac uaaacauaa- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAAAA UU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.capen 5213 bp RNA RNA 28-JUL-1996 DEFINITION Mitochondrion Procavia capensis.; . ACCESSION U60184 KEYWORDS . SOURCE Mitochondrion Procavia capensis. ORGANISM Mitochondrion Procavia capensis. REFERENCE 1 (bases 1 to 951) AUTHORS Springer,M.S. and Douzery,E. TITLE Secondary structure and patterns of evolution among mammalian mitochondrial 12S rRNA molecules JOURNAL J. Mol. Evol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 951) AUTHORS Lavergne,A., Douzery,E., Stichler,T., Catzeflis,F. and Springer,M. TITLE Between order mammalian relationships: paenungulate monophyly is evidenced by the complete 12S rDNA gene JOURNAL Mol. Phylogenet. Evol. (1996) In press STANDARD No information REFERENCE 3 (bases 1 to 951) AUTHORS Springer,M.S. TITLE Direct Submission JOURNAL Submitted (06-JUN-1996) Mark S. Springer, University of California, Biology, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U60184 DEFINITION Procavia capensis 12S ribosomal RNA gene, mitochondrial gene encoding mitochondrial rRNA, complete sequence. ACCESSION U60184 SOURCE cape rock hyrax ORGANISM Mitochondrion Procavia capensis Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Hyracoidea; Procaviidae; Procavia. BASE COUNT 350 a 222 c 167 g 212 t 4262 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|GGCCU-UC UUA-UUAGUU -A-CUAG-UA |GG-CU--UA -UAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACUCCAGU GAAAA---UG C|CCU-Ucua --au-ca--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--caguc -----)---- 1261 ---------- ---------- --ug--acc- a-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACAC-- -----(auuc ---------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--CAA C|ACCUU-GC --|------- (-aua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAA----C-A 1501 GCA|GUA-AU AGAAAUUUAG C-AAUUAAU( ---------- ----GAAA)G UUAGA-CUA| 1561 A|-GCCA-U- AC-UAUacuu aa-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAA G--------c accGGC|GUA AAGCAUGUUU -A-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------g acaaaaucaa acuaaa--gc -----|CAAA UUCAAU-UCA ----AGCC(G 2341 UAAAA)AGCC AA-------C AAUU-guaaU AAA------- ----auaauc -aAC(-GAAA 2401 -)GU|g---- ----gcuuua uaaca----- ---------- ucu-GAACAC AUGAU-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CUUAAA-CCC 2521 C--AGCA-UC |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(uaac)g a---A-GCUG 2701 U-U|--C|GC C-AGAG-AAC UACCAGC(-- -AAAA--)GC UAA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-CC CACCUAGA|G GAGCCUGU-C |CAAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACCAUUUGCC ---------- ---------- 2881 (-------ug cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(aag- 3181 ua-)------ A-AGUAAGCA CAA-CAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aucc-- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|GCU AAU------- ---------A 3841 U-G-GU-GG- ac-uua--GA -UGGGCUACA UU--CUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ca ca---)---- ---------- ---------- UAA-AGcaau 4021 ---------- ------ACGA --AUGUU-AC C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-AG-U--AA -C--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UCA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaguacc-u 4381 aauuc-uacu ca(auaca)u aaacacauaa aaau-ucaa- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAAaa acu------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (19)-Insec 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.A.hotte 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Amblysomus hottentotus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Amblysomus hottentotus. ORGANISM Mitochondrion Amblysomus hottentotus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M95108 DEFINITION Amblysomus hottentotus mitochondrial 12S ribosomal RNA. SOURCE Amblysomus hottentotus (chromosome Mitochondrion Amblysomus hottentotus) liver rRNA. ORGANISM Amblysomus hottentotus Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Insectivora; Lipotyphla; Chrysochloridae. REFERENCE 1 (bases 1 to 952) AUTHORS Allard,M.W. and Miyamoto,M.M. TITLE Testing phylogenetic approaches with empirical data as illustrated with the parsimony method JOURNAL Mol. Biol. Evol (1992) In press FEATURES Location/Qualifiers rRNA 1..952 /product="12S ribosomal RNA" /gene="12S rRNA" BASE COUNT 347 a 187 c 161 g 257 t 4261 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|GGCCU-UU UUA-UUAGUU -G-GUAG-UA |AA-AU--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCAGU GAGAA---UA C|CCU-Uuaa --au-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----gcu -----)---- 1261 ---------- ---------- --ag--auu- a-aUAGGAGU |--------- aGGUAUCA-- 1321 -AGCACACC- -----(auua ---------- ---------- ---------- ------)--- 1381 --GGU|---A GCUAA--UAA C|ACCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UUa----C-A 1501 GCA|GUA-AC AAAAAUUUAG C-AAUUAAC( ---------- ----GAAA)G UUAGA-CUA| 1561 A|-GUUA-U- AC-UACucua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUAA A--------u acCGGC|GUA AAGCGUGUUC -A-ggg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- gaaacaaaac aauaaa--ga -----|UGAA AUAUUU-CUA ----CACU(G 2341 UAAAA)AGUU AU-------A GAAG-UacuA AAA------- ----auauac -uAC(-GAAA 2401 -)GU|g---- ----acuuua uuaca----- ---------- ccu-uacaAC ACGAU-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CUU 2521 U--AAUA-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(aaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AAUA--)GC CUA--AAACU UAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CACCUAGA|G GAGCCUGU-U |AUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUCUUGCU ---------- ---------- 2881 (-------aa uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(caa- 3181 aa-)------ C-AGUAAGCU UAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uucc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 U-A-GU-GG- UA-UUC--AA -UGGGCUACA UU--UUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a uc---)---- ---------- ---------- CAG-AAcauu 4021 cuua------ ------ACGG --AUAUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) u-AA-A--AA -U--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-CUAAGA(- auaga-ga-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCC 4261 AUGAAG-CA- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaguaac-- 4381 ----u-auau ucua--uuaa -acaua-uuu ua-uccuaau a-----aa-- -uacaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAAaa cu-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.albiv 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Atelerix albiventris. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Atelerix albiventris. ORGANISM Mitochondrion Atelerix albiventris. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M95109 DEFINITION Atelerix albiventris mitochondrial 12S ribosomal RNA. SOURCE Atelerix albiventris (chromosome Mitochondrion Atelerix albiventris) liver rRNA. ORGANISM Atelerix albiventris Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Insectivora; Lipotyphla; Erinaceidae; Echinosoricinae. REFERENCE 1 (bases 1 to 966) AUTHORS Allard,M.W. and Miyamoto,M.M. TITLE Testing phylogenetic approaches with empirical data as illustrated with the parsimony method JOURNAL Mol. Biol. Evol (1992) In press FEATURES Location/Qualifiers rRNA 1..966 /product="12S ribosomal RNA" /gene="12S rRNA" BASE COUNT 355 a 181 c 164 g 266 t 4247 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUC 661 (UGG-)U-CC C|AGCCU-UC CUA-UUuucu -A-UUAG-UA |GA-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCUAACCAGU GAGAA---UG C|CCU-Cuaa --cc-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(auuauau -----)---- 1261 ---------- ---------- --ag--gua- u-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGUACACA- -----(auaa a--------- ---------- ---------- ------)--- 1381 --UGU|---U GCUUA--UAA C|AUCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAa----C-A 1501 GCA|GUG-AU AAAUCUUGAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUCA-U- AC-UAAuaca ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 uguuA-AUAG G-------aa uuCGGC|GUA AAGAGUGUUU --uaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -uauuauuaa acugaa--au -----|UAAA AUAUGA-UUC ----AGAU(G 2341 UAAAA)AGCU UA-------A AUUA-UuuaU UAA------- --aauucaac -uAC(-AAAA 2401 -)GU|g---- ----auuuca uaaaa----- ---------- ucu-uauuAC ACGUG-AGCU 2461 A-AGA---UC CAAACUAGG( AUUAGAUAC) CCUA-UUAU| -GCUU-AGC- CCUAAA-CUU 2521 A--GACA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -cu(uaac)a a---A-ACUG 2701 U-A|--C|GC C-AGAG-AAC UACGAGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA--C CCCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC AAUCUUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUU-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(agg- 3181 aa-)------ A-AGUAAGCA CAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --ccacaac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGCA|GCC AAU------- ---------A 3841 G-A-UU-GG- GA-UGA--AA -UGGGCUACA UU--CUUUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- AAA-AGcau- 4021 ---------- ------ACGG --AUAUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) u-AA-A--AA -U--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- guaga-gu-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GUU--GGCA 4261 AUGAAG-CA- UGCACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaauauau- 4381 aaa-u-cauu ua-au--uuu auacuuaaua c--uauuaug auaaaaua-- -uguaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAAG-AGA-U AAGUCGUAAC AAGGUAAG-U AUA-CU(GGA 4621 -A)AGU-GU- ACUUGGAAUa uc-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.E.europ 5213 bp RNA RNA 11-JAN-191 DEFINITION Erinaceus europaeus. ACCESSION No information KEYWORDS No information. SOURCE Erinaceus europaeus. ORGANISM Erinaceus europaeus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X88898 LOCUS MTEECOMSQ 17442 bp DNA UNA 22-JAN-1996 DEFINITION E.europaeus complete mitochondrial DNA sequence. ACCESSION X88898 NID g1165126 KEYWORDS 12S rRNA; 16S rRNA; ATPase subunit 6; ATPase subunit 8; complete sequence; control region; cytochrome b; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; mitochondria; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; origin of light-strand replication; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser; tRNA-Ser(AGY); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Erinaceus europeus. ORGANISM Mitochondrion Erinaceus europeus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Insectivora; Lipotyphla; Erinaceidae; Erinaceinae; Erinaceus. REFERENCE 1 (bases 1 to 17442) AUTHORS Krettek,A., Gullberg,A. and Arnason,U. TITLE Sequence analysis of the complete mitochondrial molecule of the hedgehog, Erinaceus europaeus, and the phylogenetic position of the Erinaceidae JOURNAL J. Mol. Evol. 41, 952-957 (1995) REFERENCE 2 (bases 1 to 17442) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (21-JUN-1995) U. Arnason, University of Lund, Dept of Genetics, Division of Evolutionary Molecular Systematics, Solvegatan 29, 22362 Lund, SWEDEN COMMENT NCBI gi: 1165126 FEATURES Location/Qualifiers source 1..17442 /organism="Erinaceus europeus" /mitochondrion /note="complete sequence" tRNA 1..66 /gene="tRNA-Phe" /product="transfer RNA-Phe" rRNA 67..1037 /gene="12S rRNA" /product="12S ribosomal RNA" tRNA 1038..1105 /gene="tRNA-Val" /product="transfer RNA-Val" rRNA 1106..2668 /gene="16S rRNA" /product="16S ribosomal RNA" tRNA 2669..2738 /gene="tRNA-Leu (UUR)" /product="transfer RNA-Leu" misc_feature 2740..3693 /note="NADH dehydrogenase subunit 1" tRNA 3694..3762 /gene="tRNA-Ile" /product="transfer RNA-Ile" tRNA complement(3759..3832) /gene="tRNA-Gln" /product="transfer RNA-Gln" tRNA 3832..3900 /gene="tRNA-Met" /product="transfer RNA-Met" misc_feature 3904..4947 /note="NADH dehydrogenase subunit 2" tRNA 4949..5015 /gene="tRNA-Trp" /product="transfer RNA-Trp" tRNA complement(5020..5090) /gene="tRNA-Ala" /product="transfer RNA-Ala" tRNA complement(5091..5163) /gene="tRNA-Asn" /product="transfer RNA-Asn" rep_origin 5164..5199 /note="complementary strand" tRNA complement(5200..5268) /gene="tRNA-Cys" /product="transfer RNA-Cys" tRNA complement(5270..5339) /gene="tRNA-Tyr" /product="transfer RNA-Tyr" misc_feature 5341..6885 /note="cytochrome c oxidase subunit I" tRNA complement(6884..6951) /gene="tRNA-Ser (UCN)" /product="transfer RNA-Ser" tRNA 6959..7027 /gene="tRNA-Asp" /product="transfer RNA-Asp" misc_feature 7029..7712 /note="cytochrome c oxidase subunit II" tRNA 7714..7778 /gene="tRNA-Lys" /product="transfer RNA-Lys" misc_feature 7781..7987 /note="ATPase subunit 8" misc_feature 7942..8622 /note="ATPase subunit 6" misc_feature 8622..9404 /note="cytochrome c oxidase subunit III" tRNA 9406..9479 /gene="tRNA-Gly" /product="transfer RNA-Gly" misc_feature 9480..9824 /note="NADH dehydrogenase subunit 3" tRNA 9827..9895 /gene="tRNA-Arg" /product="transfer RNA-Arg" misc_feature 9896..10192 /note="NADH dehydrogenase subunit 4L" misc_feature 10186..11562 /note="NADH dehydrogenase subunit 4" tRNA 11564..11629 /gene="tRNA-His" /product="transfer RNA-His" tRNA 11630..11689 /gene="tRNA-Ser (AGY)" /product="transfer RNA-Ser" tRNA 11689..11759 /gene="tRNA-Leu (CUN)" /product="transfer RNA-Leu" misc_feature 11764..13575 /note="NADH dehydrogenase subunit 5" misc_feature complement(13572..14105) /note="NADH dehydrogenase subunit 6" tRNA complement(14105..14173) /gene="tRNA-Glu" /product="transfer RNA-Glu" mRNA 14177..15316 /gene="cyt b" /product="cytochrome b" tRNA 15317..15386 /gene="tRNA-Thr" /product="transfer RNA-Thr" tRNA complement(15388..15454) /gene="tRNA-Pro" /product="transfer RNA-Pro" misc_feature 15455..17442 /note="control region" BASE COUNT 5932 a 3500 c 2186 g 5824 t ORIGIN BASE COUNT 351 a 188 c 173 g 259 t 4242 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ------uaua auuaaAGGUC 661 (UGG-)U-CC C|AGCCU-UC CUA-UUUUCU -A-UUAG-UA |GA-AU--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCUACCCAGU GCGAA---UG C|CCU-Cuaa --cc-cua-- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(ccauuaa -----)---- 1261 ---------- ---------- -uag--gug- u-aAAGGAGC |--------- gGAUAUCA-- 1321 -AGUACACA- -----(caua ---------- ---------- ---------- ------)--- 1381 --UGU|---U GCUAA--UGA C|AUCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAA----C-A 1501 GCA|GUG-AU AAAUAUUGAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCCA-U- AU-UAAuuua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-C(-CG AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 UGAGA-AUAG G-------aa auCGGC|GUA AAGAGUGUUu --agga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -uauuaaugu aaugaa--au -----|UAAA AAAUGA-CUU ----AGCU(G 2341 UAAAA)AGCU CA-------u uuca-uaaaU AAA------- ----aacauc -uAC(-AAAA 2401 -)GU|g---- ----auuuca uagga----- ---------- ucu-uauuAC ACGUG-AGCU 2461 A-AGA---CC CAAACUAGG( AUUAGAUAC) CCUA-UUAU| -GCUU-AGC- CCUAAA-CUU 2521 A--GACA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -cu(uaac)a a---A-ACUG 2701 U-A|--C|GC C-AGAG-AAC UACGAGC(-- -UACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA--C CCCCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC AAUCUUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUU-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CG AAC-|CCU(A --AAA)AGG- -----(aau- 3181 aa-)------ A-AGUAAGCA CAA-UGAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ucaaac 3781 ---------A UAAAUA-AGU U-AGGUCA-G G|UGCA|GCC UAU------- ---------A 3841 G-A-UU-GG- AA-UGA--AA -UGGGCUACA UU--CUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- AAA-AGuaua 4021 ---------- ------ACGG --AAAUU-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) u-AA-A--AA -U--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- guaga-gu-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--GGCA 4261 AUGAAG-CA- UGCACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagcauau- 4381 uaa-g-ucac c--aaccuau auaauuaaug uuau-aauga uaaucaca-- -ugcaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAAG-AGA-U AAGUCGUAAC AAGGUAAG-U AUA-CU(GGA 4621 -A)AGU-GU- ACUUGGAUUA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.parad 5213 bp RNA RNA 19-AUG-1998 DEFINITION Mitochondrion Solenodon paradoxus.; . ACCESSION AF0766 6 KEYWORDS . SOURCE Mitochondrion Solenodon paradoxus. ORGANISM Mitochondrion Solenodon paradoxus. REFERENCE 1 (bases 1 to 2603) AUTHORS Stanhope,M.J., Waddell,V.G., Madsen,O., de Jong,W., Hedges,S.B ., Cleven,G.C., Kao,D. and Springer,M.S. TITLE Molecular evidence for multiple origins of Insectivora and for a new order of endemic African insectivore mammals JOURNAL Proc. Natl. Acad. Sci. U.S.A. 95 (17), 9967-9972 (1998) STANDARD No information REFERENCE 2 (bases 1 to 2603) AUTHORS Stanhope,M.J., Waddell,V.G., Madsen,O., de Jong,W., Hedges,S.B., Cleven,G.C., Kao,D. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (06-JUL-1998) Biology, University of California, 1354 Spieth, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF076646 BASE COUNT 358 a 212 c 170 g 224 t 4249 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGNU 661 (UGG-)U-CC U|GGCCU-UU UUA-UUGGUU -U-AUAG-UA |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAAGCCAGU GAAAA---UG C|CCU-Cuaa --ac-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---caca c----)---- 1261 ---------- ---------- --ua--guu- a-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACAC-- -----(aaau agc------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UGA C|ACCUU-GC --|------- (-uuu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG uaa---aC-A 1501 GCA|GUG-AU AGAAAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-UAuac-a a--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUCA-AUAA A--------c acCGGC|GUA AAGCGUGcCa -a-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------uu auuuaaaaca aauaaa--gu -----|uaag aucuga-cua ----aaaC(G 2341 UAAAA)ccac u--------a guua-gcgua aaa------- ----auaaac -aAC(-GAAA 2401 -)GU|g---- ----acuuua gauau----- ---------- uuu-aacuGC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 A--AACA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -nu(aaac)a a---A-AUUG 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CAUCUANA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AACCUUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(uac- 3181 ca-)------ A-AGUAAGCA UAA-ACAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------A 3841 G-G-UU-GG- GA-AGA--AA -UGGGCUACA UU--UNCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-gc ac---)---- ---------- ---------- AAA-AAcacu 4021 uugcuau--- ------ACAA --ACAUC-CC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAACc--) U-GG-G--GA -U--UGAAG- -GAGGAUUUA 4141 C-C--AGUAA A-UUAAGA(- auaua-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCA 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaua--ca 4381 acau--cacc ---a-aacua -acaua-uag a--ua-uagu guaaugag-- -cauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GU- GCUUGGACUA Acc------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.aquat 5213 bp RNA RNA 19-AUG-1998 DEFINITION Mitochondrion Scalopus aquaticus.; . ACCESSION AF0695 9 KEYWORDS . SOURCE Mitochondrion Scalopus aquaticus. ORGANISM Mitochondrion Scalopus aquaticus. REFERENCE 1 (bases 1 to 2604) AUTHORS ., Cleven,G.C., Kao,D. and Springer,M.S. Stanhope,M.J., Waddell,V.G., Madsen,O., de Jong,W., Hedges,S.B TITLE for a new order of endemic African insectivore mammals Molecular evidence for multiple origins of Insectivora and JOURNAL Proc. Natl. Acad. Sci. U.S.A. 95 (17), 9967-9972 (1998) STANDARD No information REFERENCE 2 (bases 1 to 2604) AUTHORS Stanhope,M.J., Waddell,V.G., Madsen,O., de Jong,W., Cleven,G.C., Kao,D. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (01-JUN-1998) Biology, University of California, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF069539 BASE COUNT 347 a 203 c 185 g 230 t 4248 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- -uaaaAGGUU 661 (UGG-)U-CC U|GGCCU-UU CUA-UUAGCU -G-UCAG-UA |AA-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GAAAA---UG C|CCU-Ugaa --gu-ca--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---ucau -----)---- 1261 ---------- ---------- --ag--aca- u-aAAGGAGC |--------- cGGCAUCA-- 1321 -AGUACACc- -----(auaa u--------- ---------- ---------- ------)--- 1381 --gGU|---A GCUAA--CGA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG AAa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-UAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-UGAua-- ua-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAAU|--- -AAC-CCA-- 1981 AGUUA-AUAG A-------ua cacGGC|GUA AAGAGUGUUa -a-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------acc uggcauugua aauaaa--gc -----|uaag acuuaa-cua ----agac(G 2341 UAAAA)aucu cc-------a guua-aagua aaa------- ----acaaac -uAC(-GAAA 2401 -)GU|g---- ----gcuuua uauuau---- ---------- ucu-gaucAC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CUA 2521 A--GACA-AU |CC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aac(uaac)a a---G-AUUG 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AACCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --AAA)GGG- -----(agc- 3181 ca-)------ C-AGUAAGCA CAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----au-ac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU AAU------- ---------G 3841 A-G-UU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua uc---)---- ---------- ---------- UAG-AAcacu 4021 uua------- ------ACGA --AAGUC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) G-AA-A--GA -C--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-gu-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 cuaaa-gcca g--ucaauau -acaua-aua uaua---ggc aauaaa---- -uacaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUUA Ac-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.Bl.brev 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Blarina brevicauda. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Blarina brevicauda. ORGANISM Mitochondrion Blarina brevicauda. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M95110 DEFINITION Blarina brevicauda mitochondrial 12S ribosomal RNA. SOURCE Blarina brevicauda (chromosome Mitochondrion Blarina brevicauda) liver rRNA. ORGANISM Blarina brevicauda Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Insectivora; Lipotyphla; Soricidae; Soricinae. REFERENCE 1 (bases 1 to 963) AUTHORS Allard,M.W. and Miyamoto,M.M. TITLE Testing phylogenetic approaches with empirical data as illustrated with the parsimony method JOURNAL Mol. Biol. Evol (1992) In press FEATURES Location/Qualifiers rRNA 1..963 /product="12S ribosomal RNA" /gene="12S rRNA" BASE COUNT 342 a 202 c 177 g 242 t 4250 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC C|AGCCU-UC CUA-UUAAUU -G-UUAG-CA |AA-UU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCUGU GAGAA---UA C|CCU-Uuaa --au-ca--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---ccua -----)---- 1261 ---------- ---------- --ug--acu- g-aAAGGAGU |--------- aGGUAUCA-- 1321 -AGCACACUu -----(auuu au-------- ---------- ---------- ------)--- 1381 -aAGU|---A GCUAA--UCA C|ACCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-GUUA-U- GC-UAAuauu ua-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAG G--------u agCGGC|GUA AAGCGUGUUa -a-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------a cacuaaauaa aauaaa--ga -----|UAAA ACUUGA-CUA ----GGCU(G 2341 UAGAA)AGCA AC-------A GUCA-AgacU AAA------- ----auaaac -uAC(-GAAA 2401 -)GU|g---- ----acuuua uuacu----- ---------- uuu-gaucAC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CUU 2521 A--GGUA-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(uaac)a a---A-ACUA 2701 C-U|--C|GC C-AGAG-GAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC GCCCCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC UUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(aau- 3181 aa-)------ C-AGUAAGCU UAA-AUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uucac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU UAU------- ---------G 3841 G-G-GC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua ac---)---- ---------- ---------- UAG-AAuauu 4021 c--------- ------ACGA --AAGUU-UC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) u-AG-A--AA -C--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA G-UUAAGA(- auaga-gc-- --)GCUUAAC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaguauuu- 4381 uaa-g-ucua c-----ugau -auaua-auc uc-----aga cuaacuaa-- -uauua---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGACGA Au-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.palus 5213 bp RNA RNA 15-MAY-1997 DEFINITION Mitochondrion Sorex palustris.; . ACCESSION U97343 KEYWORDS . SOURCE Mitochondrion Sorex palustris. ORGANISM Mitochondrion Sorex palustris. REFERENCE 1 (bases 1 to 2601) AUTHORS .G., Amrine,H.M. and Stanhope,M.J. Springer,M.S., Cleven,G.C., Madsen,O., de Jong,W.W., Waddell,V TITLE Endemic African mammals shake the phylogenetic tree JOURNAL Nature (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 2601) AUTHORS Springer,M.S., Cleven,G.C., Madsen,O., de Jong,W.W., Waddell,V.G., Amrine,H.M. and Stanhope,M.J. TITLE Direct Submission JOURNAL Submitted (12-APR-1997) Biology, University of California, 1354 Spieth Hall, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U97343 BASE COUNT 347 a 199 c 177 g 243 t 4247 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC C|AGCCU-UC CUA-UUAGUU -G-UUAG-CA |AA-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUUCCUGU GAGAA---UA C|CCUcgcaa --au-ca--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---ucca -----)---- 1261 ---------- ---------- --ug--auu- a-aAAGGAGU |--------- aGGUAUCA-- 1321 -AGCACACUC -----(uuau u--------- ---------- ---------- ------)--- 1381 -GAGU|---A GCUUA--CGA C|ACCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- GC-UAA-ca- ua-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAG G--------c aaCGGC|GUA AAGCGUGUUa -a-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------augc ucaacacaua aauaaa--ga -----|UAAA ACUUAA-CUA ----GGCU(G 2341 UAGAA)AGCA AC-------A GUUA-AaacU AAA------- ----auacgc -uAC(-GAAA 2401 -)GU|g---- ----acuuua uuaua----- ---------- gcu-gauuAC ACGAU-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CUU 2521 A--GGUA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- guc(uaac)a a---A-AAUA 2701 C-C|--C|GC C-AGAG-AAC UACUAGC(-- -AAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACCCCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC UUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(cau- 3181 aa-)------ U-AGUAAGCA CAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aggac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU UAU------- ---------G 3841 A-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(uua ac---)---- ---------- ---------- UAG-AAcacu 4021 u--------- ------ACGA --AAGUU-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) u-AA-U--AA -C--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA G-UUAAGA(- auaga-gu-- --)GCUUAAC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaguacuuu 4381 aaacu-aacc ---u-aauuu --aua--auu ac-a--aguu ac--ccag-- -uauua---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAAG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGACGA Au-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.E.telfa 5213 bp RNA RNA 19-AUG-1998 DEFINITION Mitochondrion Echinops telfairi.; . ACCESSION AF0695 0 KEYWORDS . SOURCE Mitochondrion Echinops telfairi. ORGANISM Mitochondrion Echinops telfairi. REFERENCE 1 (bases 1 to 2580) AUTHORS Stanhope,M.J., Waddell,V.G., Madsen,O., de Jong,W., Hedges,S.B ., Cleven,G.C., Kao,D. and Springer,M.S. TITLE Molecular evidence for multiple origins of Insectivora and for a new order of endemic African insectivore mammals JOURNAL Proc. Natl. Acad. Sci. U.S.A. 95 (17), 9967-9972 (1998) STANDARD No information REFERENCE 2 (bases 1 to 2580) AUTHORS Stanhope,M.J., Waddell,V.G., Madsen,O., de Jong,W., Cleven,G.C., Kao,D. and Springer,M.S. TITLE Direct Submission JOURNAL Submitted (01-JUN-1998) Biology, University of California, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF069540 BASE COUNT 347 a 214 c 162 g 233 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-UC U|AGCCU-UU UUA-UUAGUU -C-UUAA-UA |AA-AU--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCCCCCCAGU GAAAA---UG C|CCU-U-aa --ac-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---acuu a----)---- 1261 ---------- ---------- --ua--auu- a-aGAGGAGC |--------- aGGUAUCA-- 1321 -AGCACAC-- -----(uuaa u--------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--CAA C|ACCUU-GC --|------- (-uaa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCU--( CACG-)--GG ACa----C-A 1501 GCA|GUA-AU AAAAAUUAAG C-AAUUAAC( ---------- ----GGAA)G UUUGA-CUU| 1561 A|-GUUA-U- AU-UAUuua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- AAGUC|-GGU 1921 -CAA-C---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAAG|--- -GAC-UUG-- 1981 RACUA-AUAA A--------u acCGGC|GUA AAGCGUGAUu -a-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u cuuuaa--gc aauaaa--ac -----|uaaa acuauu-cua ----ugcc(G 2341 UAAAA)agcc ag-------a gaau-acuua uaa------- -----uaaau -aAC(-GAAG 2401 -)GU|a---- ----auuuua uaacu----- ---------- ucu-gaacCC ACGAU-AGCU 2461 A-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCU 2521 A--GAUA-GU |CU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ac(-aac)a a---GACaUA 2701 U-C|--C|GC C-AGAG-AAC UACUAGC(-- -AAA---)GC UAA--AAACU UAAAGAAC-U 2761 UG|GCGGUG- CUUCACA-CC CACCUAGA|G GAGCCUGU-U |AUGUA--AU UG(AUACACC 2821 C--------- ----)CACUA A-ACCCUACC ACCACUUGCU ---------- ---------- 2881 (-------aa gu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC CU-CA|G-CA AAC-|CCC(- --AAA)AGG- -----(cau- 3181 au-)------ C-AGUAAGCA UAA-UGAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aagac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC CAU------- ---------G 3841 U-G-GU-GG- AA-CCU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-gc au---)---- ---------- ---------- UAG-AAaacc 4021 cuca------ ------ACGA --AAGUA-CU A-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAU---) UuCA-G--UA -C--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-CUGAGA(- auaga-gu-- --)GCUCAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACU--GGCC 4261 AUGAAG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU U--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aauuu---- 4381 -acau-auua uaaguaaccu -ccaua-aac agcuacuuau ac---acc-- -ccaua---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- AAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAAAA Cc-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (19)-Lagom 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.O.cunic 5213 bp RNA RNA 03-JUL-1998 DEFINITION Mitochondrion Oryctolagus cuniculus.; 12S rRNA; 16S rRNA; ATPase 6 gene; ATPase 8 gene; COI gene; COII gene; COIII gene; cytb gene; D-loop; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; origin of light-strand replication; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. ACCESSION AJ0015 8 KEYWORDS 12S rRNA; 16S rRNA; ATPase 6 gene; ATPase 8 gene; COI gene; COII gene; COIII gene; cytb gene; D-loop; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; origin of light-strand replication; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Mitochondrion Oryctolagus cuniculus. ORGANISM Mitochondrion Oryctolagus cuniculus. REFERENCE 1 (bases 1 to 17245) AUTHORS Gissi,C., Gullberg,A. and Arnason,U. TITLE The complete mitochondrial DNA sequence of the rabbit, Oryctolagus cuniculus JOURNAL Genomics 50, 161-169 (1998) STANDARD No information REFERENCE 2 (bases 1 to 17245) AUTHORS Gissi,C. TITLE Direct Submission JOURNAL Submitted (17-SEP-1997) Gissi C., Dept. of Genetics, Division of Evolutionary Systematics, University of Lund, Solvegatan 29, Lund, 223 62, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AJ001588 BASE COUNT 343 a 211 c 174 g 229 t 4256 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|GGCCU-UU UUA-UU-GUU UU-GUAG-CA |AC-CU--UA -CAC-A-UGC 721 -AAGa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- uCACGCCAGU GAGAA---UG C|CCU-Uaac --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-aaacua -----)---- 1261 ---------- ---------- ---g--auc- a-AGAGGAGC |--------- GGACAUUA-- 1321 -AGCACAC-- -----(uaau ca-------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--AGA U|GCCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AUA----C-A 1501 GCA|GUG-AU AAAUAUUUAG C-AAUGAAC( ---------- ----GUAA)G UUUGA-CUA| 1561 A|-GUUA-U- GC-UACuuua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAA A-------ua ucCGGC|GUA AAGCGUGAuu -a-gaa---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- uaaacaacaa aauaaa--au -----|CAAA UAACAA-CUA ----AGCU(G 2341 UAGAA)AGUA AU-------A GUUG-CAAAC AAaa------ ----auaaac -aAC(-GAAA 2401 -)GU|g---- ----auuuua uacuc----- ---------- uuc-GAACUC ACGAU-AGCU 2461 A-AGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CUU 2521 U--GAUA-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ca(uaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACAAGC(-- -CAAA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-CC CACCUAGA|G GAGCCUGU-U |CCGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCCUACC ACUCUUUGCC ---------- ---------- 2881 (-------aa cu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CG AAC-|CCU(A --AAA)AGG- -----(agc- 3181 aa-)------ A-AGUAAGCU CAA-UUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacc-- 3781 ---------G UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------A 3841 G-A-GU-GG- AG-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c uu---)---- ---------- ---------- CAG-AAuau- 4021 ---------- ------ACGA --AAGCC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-uc) U-AA-G--GG -C--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-gu-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagug---- 4381 --aca-aau- --auuuacuu auaccua-au uaca--uaaa uagacaag-- -cauaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGACAU UU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.aud.1 5213 bp RNA RNA 12-SEP-1996 DEFINITION Mitochondrion Sylvilagus audubonii.; . ACCESSION U67285 KEYWORDS . SOURCE Mitochondrion Sylvilagus audubonii. ORGANISM Mitochondrion Sylvilagus audubonii. REFERENCE 1 (bases 1 to 768) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE Higher level systematics of rodents (Mammalia, Rodentia): evidence from the mitochondrial 12SrRNA gene JOURNAL J. Mammal. Evol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 768) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE Direct Submission JOURNAL Submitted (20-AUG-1996) Wildlife and Fisheries, Texas A&M University, 210 Nagle Hall, College Station, TX 77843-2258, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U67285 BASE COUNT 287 a 168 c 134 g 179 t 4445 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~GC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCACACCGGU GAGAA---UG C|CCU-Uuac --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-aauuua -----)---- 1261 ---------- ---------- ---g--auc- a-AGAGGAGC |--------- AGGCAUUA-- 1321 -AGCACAC-- -----(uauu ua-------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--AGA U|GCCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAA----C-A 1501 GCA|GUG-AU AGAAAUUUAG C-AAUGAAC( ---------- ----GCAA)G UUUGA-CUA| 1561 A|-GUUA-U- GC-UACucua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUAA A-------uu ccCGGC|GUA AAGCGUGAuu -a-gaa---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----uuaaa aacagaaaaa aauaaa--au -----|CAAA UAACAA-CUA ----AGCU(G 2341 UAAAA)AGUA AU-------A GUUA-CAAAC AAaa------ ----auaaac -aAC(-GAAA 2401 -)GU|g---- ----auuuua uagcc----- ---------- uuc-GAAUUC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CUU 2521 A--AAUA-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ca(uaac)a a---A-AUUA 2701 C-U|--C|GC C-AGAG-AAC UACAAGC(-- -CAGA--)GC UUG--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUUACC ACUCUUUGCC ---------- ---------- 2881 (-------aa cu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CG AAC-|CCU(A --AAA)AGG- -----(aac- 3181 aa-)------ A-AGUAAGCU CAA-UUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cccc-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------A 3841 G-A-GU-GG- AA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c uu---)---- ---------- ---------- CAG-AAcau- 4021 ---------- ------ACGA --AAGCC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-uc) U-AA-G--AG -C--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-gu-- --)GCUUAAU U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.aud.2 5213 bp RNA RNA 16-DEC-1997 DEFINITION Mitochondrion Sylvilagus audubonii.; . ACCESSION AF0380 9 KEYWORDS . SOURCE Mitochondrion Sylvilagus audubonii. ORGANISM Mitochondrion Sylvilagus audubonii. REFERENCE 1 (bases 1 to 955) AUTHORS Douzery,E. and Catzeflis,F.M. Springer,M.S., Burk,A., Metcalf,A., Cleven,G.C., Lavergne,A., TITLE evidence for rate acceleration in proboscideans Rates of 12S rRNA nucleotide substitution in mammals with JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 955) AUTHORS Springer,M.S., Burk,A., Metcalf,A., Cleven,G.C., Lavergne, A., Douzery,E. and Catzeflis,F.M. TITLE Direct Submission JOURNAL Submitted (10-DEC-1997) Biology, University of California, 1354 Spieth, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038018 BASE COUNT 345 a 212 c 172 g 226 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UU UUA-UU-GUU UC-GUAG-CA |AG-UU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCACGCCAGU GAGAA---UG C|CCU-Uaac --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-aauaua -----)---- 1261 ---------- ---------- ---g--auc- a-AGAGGAGC |--------- AGGCAUUA-- 1321 -AGCACAC-- -----(uaau ca-------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--AGA U|GCCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAA----C-A 1501 GCA|GUG-AU AGAAAUUUAG C-AAUGAAC( ---------- ----GUAA)G UUUGA-CUA| 1561 A|-GUUA-U- GC-UACucua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUAA A-------ua ccCGGC|GUA AACGGUGAuu -a-gag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------c uaauaaaaaa aauaaa--au -----|CAAA UAACAA-CUA ----AGCU(G 2341 UAAAA)AGUA AU-------A GUUG-CAAAC AAaa------ ----auaaac -cAC(-GAAA 2401 -)GU|----- ----auuuua caauc----- ---------- cuc-GAACUC ACGAA-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 G--AAUA-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ca(uaac)a a---A-AUUA 2701 C-U|--C|GC C-AGAG-AAC UACAAGC(-- -CAGA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-CC CGCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUUACC ACUCUUUGCC ---------- ---------- 2881 (-------aa cu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CG AAC-|CCU(A --AAA)AGG- -----(aac- 3181 aa-)------ A-AGUAAGCU CAA-CUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cccc-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------A 3841 G-A-GU-GG- AA-AGU--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c uu---)---- ---------- ---------- CAG-AAcau- 4021 ---------- ------ACGA --AAGCC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-uc) U-AA-G--GG -C--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-gu-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCG C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 --uua-aau- --auuuccca u-ucaua-au uacaa-aaua ---aacuga- -uauaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGACAU UG-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.nutta 5213 bp RNA RNA 28-JUN-1997 DEFINITION Mitochondrion Sylvilagus nuttallii.; . ACCESSION U63886 KEYWORDS . SOURCE Mitochondrion Sylvilagus nuttallii. ORGANISM Mitochondrion Sylvilagus nuttallii. REFERENCE 1 (bases 1 to 691) AUTHORS Halanych,K.M. and Robinson,T.J. TITLE Lagomorpha): congruence of 12S rDNA and cytogenetic data Phylogenetic relationships of cottontails (Sylvilagus, JOURNAL Mol. Phylogenet. Evol. 7 (3), 294-302 (1997) STANDARD No information REFERENCE 2 (bases 1 to 691) AUTHORS Halanych,K.M. and Robinson,T.J. TITLE Direct Submission JOURNAL Submitted (16-JUL-1996) Zoology and Entomology, University of Pretoria, Pretoria 0002, South Africa STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U63886 BASE COUNT 258 a 157 c 120 g 154 t 4524 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~-~-~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~a -----)---- 1261 ---------- ---------- ---g--auc- a-AGAGGAGC |--------- AGGCAUUA-- 1321 -AGCACAC-- -----(uaau ca-------- ---------- ---------- ------)--- 1381 ---CU|---A GCUCA--AGA N|GCCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAA----C-A 1501 GCA|GUG-AU AGAAAUUUAG C-AAUGAAC( ---------- ----GUAA)G UUUGA-CUA| 1561 A|-GUUA-U- GC-UACucua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUAA A-------ua ccCGGC|GUA AAGCGUGAuu -a-gag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------cu aauaaaaaaa aauaaa--au -----|CAAA UAACAA-CUA ----AGCU(G 2341 UAAAA)AGUA AU-------A GUUG-CAAAC AAaa------ ----auaaac -cAC(-GAAA 2401 -)GU|g---- ----auuuua caauc----- ---------- cuc-GAACUC ACGAA-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 G--AAUA-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ca(uaac)a a---A-AUUA 2701 C-U|--C|GC C-AGAG-AAC UACAAGC(-- -CAGA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-CC CGCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUUACC ACUCUUUGCC ---------- ---------- 2881 (-------aa cu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CG AAC-|CCU(A --AAA)AGG- -----(aac- 3181 aa-)------ A-AGUAAGCU CAA-CUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cccc-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------A 3841 G-A-GU-GG- AA-AGU--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c uu---)---- ---------- ---------- CAG-AAcau- 4021 ---------- ------ACGA --AAGCC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-uc) U-AA-G--GG -C--CAAAG- -GAGNAUUU~ 4141 ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.obsur 5213 bp RNA RNA 28-JUN-1997 DEFINITION Mitochondrion Sylvilagus obscurus.; . ACCESSION U63887 KEYWORDS . SOURCE Mitochondrion Sylvilagus obscurus. ORGANISM Mitochondrion Sylvilagus obscurus. REFERENCE 1 (bases 1 to 722) AUTHORS Halanych,K.M. and Robinson,T.J. TITLE Phylogenetic relationships of cottontails (Sylvilagus, Lagomorpha): congruence of 12S rDNA and cytogenetic data JOURNAL Mol. Phylogenet. Evol. 7 (3), 294-302 (1997) STANDARD No information REFERENCE 2 (bases 1 to 722) AUTHORS Halanych,K.M. and Robinson,T.J. TITLE Direct Submission JOURNAL Submitted (16-JUL-1996) Zoology and Entomology, University of Pretoria, Pretoria 0002, South Africa STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U63887 BASE COUNT 261 a 164 c 127 g 168 t 4493 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~-~-~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|c ccGCGCCGGU GAGAA---UG C|CCU-Uaac --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-agcuua -----)---- 1261 ---------- ---------- ---g--auc- a-AGAGGAGC |--------- AGGCAUUA-- 1321 -AGCACAC-- -----(uaau ua-------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--AGA U|GCCUU--C --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAA----C-A 1501 GCA|GUG-AU AGAAAUUUAG C-AAUGAAC( ---------- ----GCAA)G UUUGA-CUA| 1561 A|-GUUA-U- GC-UACucua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUAA A-------uu ucCGGC|GUA AAGCGUGAuu -a-gua---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ucuaaacaaa aauaaa--au -----|CAAA UAACAA-CUA ----AGCU(G 2341 UAAAA)AGUA AU-------A GUUG-CAAAC AAaa------ ----auaaac -gAC(-GAAA 2401 -)GU|g---- ----auuuua uaacc----- ---------- uuc-GAACUC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CUU 2521 A--AAUA-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -na(uaac)a a---A-AUUA 2701 C-U|--C|GC C-AGAG-AAC UACAAGC(-- -CAGA--)GC UUN--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUUACC ACUCUUUGCC ---------- ---------- 2881 (-------aa cu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CG AAC-|CCU(A --AAA)AGG- -----(aac- 3181 aa-)------ A-AGUAAGCU CAA-UUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cucc-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------A 3841 G-A-GU-GG- AA-AGU--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c uu---)---- ---------- ---------- CAG-AAcau- 4021 ---------- ------ACGA --AAGCC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-cc) U-AA-G--GG -C--CAAAG- -GAGGAUUU~ 4141 ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Syl.pal 5213 bp RNA RNA 28-JUN-1997 DEFINITION Mitochondrion Sylvilagus palustris.; . ACCESSION U63885 KEYWORDS . SOURCE Mitochondrion Sylvilagus palustris. ORGANISM Mitochondrion Sylvilagus palustris. REFERENCE 1 (bases 1 to 724) AUTHORS Halanych,K.M. and Robinson,T.J. TITLE Phylogenetic relationships of cottontails (Sylvilagus, Lagomorpha): congruence of 12S rDNA and cytogenetic data JOURNAL Mol. Phylogenet. Evol. 7 (3), 294-302 (1997) STANDARD No information REFERENCE 2 (bases 1 to 724) AUTHORS Halanych,K.M. and Robinson,T.J. TITLE Direct Submission JOURNAL Submitted (16-JUL-1996) Zoology and Entomology, University of Pretoria, Pretoria 0002, South Africa STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U63885 BASE COUNT 265 a 170 c 127 g 162 t 4489 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------~~~ ~~~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~-~-~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|c ccACACCGGU AAAAA---UG C|CCU-Caac --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-aauaua -----)---- 1261 ---------- ---------- ---g--auc- a-AGAGGAGC |--------- GGGCAUUA-- 1321 -AGCACAC-- -----(uauu ua-------- ---------- ---------- ------)--- 1381 ---GC|---A GCUCA--AGA U|GCCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAA----C-A 1501 GCA|GUG-AU AGAAAUUUAG C-AAUGAAC( ---------- ----GUAA)G UUUGA-CUA| 1561 A|-GUUA-U- GC-UACuuca ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AACUA-AUAA A-------ca ccCGGC|GUA AAGCGUGAuu -a-gaa---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u caaagauaaa aauaaa--au -----|CAAA UAUCAA-CUA ----GGCU(G 2341 UAAAA)AGUA AU-------A GUUG-CAAAC AAaa------ ----auaaac -aAC(-GAAA 2401 -)GU|g---- ----auuuua uaccc----- ---------- uuc-GAACUC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CUU 2521 A--AAUA-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ca(uaac)a a---A-AUUA 2701 C-U|--C|GC C-AGAG-AAC UACAAGC(-- -CAGA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUUACC ACUCUUUGCC ---------- ---------- 2881 (-------aa cu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CG AAC-|CCU(A --AAA)AGG- -----(aau- 3181 aa-)------ A-AGUAAGCU CAA-UUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cccc-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------A 3841 G-A-GU-GG- AA-AGC--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c uc---)---- ---------- ---------- CAG-AAcac- 4021 ---------- ------ACGA --AAGCC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-uc) U-GA-G--GG -C--CAAAG- -GAGGAUUU~ 4141 ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (19)-Macro 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.E.rufes 5213 bp RNA RNA 15-MAY-1997 DEFINITION Mitochondrion Elephantulus rufescens.; . ACCESSION U97339 KEYWORDS . SOURCE Mitochondrion Elephantulus rufescens. ORGANISM Mitochondrion Elephantulus rufescens. REFERENCE 1 (bases 1 to 2580) AUTHORS .G., Amrine,H.M. and Stanhope,M.J. Springer,M.S., Cleven,G.C., Madsen,O., de Jong,W.W., Waddell,V TITLE Endemic African mammals shake the phylogenetic tree JOURNAL Nature (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 2580) AUTHORS Springer,M.S., Cleven,G.C., Madsen,O., de Jong,W.W., Waddell,V.G., Amrine,H.M. and Stanhope,M.J. TITLE Direct Submission JOURNAL Submitted (12-APR-1997) Biology, University of California, 1354 Spieth Hall, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U97339 BASE COUNT 338 a 218 c 173 g 227 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCU-UA UUA-UUAGUU -G-UCAG-UA |AG-AU--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCAACCAGU GAAAA---UG C|CCU-caua -cuc-gu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-ccacua caa--)---- 1261 ---------- ---------- --ac--gauc ccaAAGGAGC |--------- CGAUAUCA-- 1321 -AGCACACC- -----(cac- ---------- ---------- ---------- ------)--- 1381 --GGU|---A GCUCA--AGA C|AUCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUA-GU AAAAAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-UGA---u ua-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -CAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -GAC-CCA-- 1981 AAUUA-AUGA U-------ua aacGGC|GUA AAGUGUGGUU -A-aac---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------acu uaccaaugua aauaaa--gu -----|UAAA CUAGCU-CUC ----AGCU(G 2341 UAAAA)AGCU AA-------a gauc-uaugg uaA------- ----auagac -uAU(-UAAU 2401 -)GU|a---- ----acuuua ---cuuaua- ---------- gug--AACCC ACGAU-AGCU 2461 A-AGA---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CUU 2521 U--GAUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(uaac)a a---A-AAUA 2701 U-C|--C|GC C-AGAG-AAC UACAAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA--C CCCCUAGA|G GAGCCUGU-U |GCAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCCuACC AUCACUUGCU ---------- ---------- 2881 (-------aa au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --AUA)AGG- -----(aac- 3181 aa-)------ U-AGUAAGCU UAA-ACGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cccc-- 3781 ---------G CAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 U-G-AU-GG- AA-AAC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c au---)---- ---------- ---------- AAG-AAca-- 4021 c--------- ------ACGA --ACUCU-UA U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-AU-C--AG -A--UAAAG- -GAGGAUUUA 4141 G-A--AGUAA G-CCAGGA(- auaga-ga-- --)GCCUGAC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUU--GGCU 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaguguuua 4381 agacu-aac- --aacccuau uacacuaaua c---aaacau aa-------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAGUA UU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (19)-Peris 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.E.asinu 5213 bp RNA RNA 23-JUL-1997 DEFINITION Mitochondrion Equus asinus.; 12S rRNA; 16S rRNA; ATPase subunit 6; ATPase subunit 8; control region; cytochrome b; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; origin of light-strand replication; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR) ; tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. ACCESSION X97337 KEYWORDS 12S rRNA; 16S rRNA; ATPase subunit 6; ATPase subunit 8; control region; cytochrome b; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; origin of light-strand replication; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR) ; tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Mitochondrion Equus asinus. ORGANISM Mitochondrion Equus asinus. REFERENCE 1 (bases 1 to 16670) AUTHORS Xu,X., Janke,A. and Arnason,U. TITLE Phylogenetic relationship among Carnivora, Perissodactyla, and Artiodactyla (+ Cetacea) The complete mitochondrial DNA sequence of the greater Indian rhinoceros, Rhinoceros unicornis, and the JOURNAL Mol. Biol. Evol. 13 (9), 1167-1173 (1996) STANDARD No information REFERENCE 2 (bases 1 to 16670) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (18-APR-1996) U. Arnason, University of Lund, Dept of Genetics, Division of Evolutionary Molecular, Systematics, Solvegatan 29, 22362 Lund, SWEDEN STANDARD No information REFERENCE 3 (bases 1 to 16670) AUTHORS Xu,X., Gullberg,A. and Arnason,U. TITLE The complete mitochondrial DNA (mtDNA) of the donkey and mtDNA comparisons among four closely related mammalian species-pairs JOURNAL J. Mol. Evol. 43 (5), 438-446 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X97337 Users are requested to refer to the citation of this entry as well as the accession number in their publications. BASE COUNT 357 a 238 c 170 g 209 t 4239 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cauAGGCU 661 (UGG-)U-CC U|GGCCU-UU UUA-UUAGUU -A-UUAA-UA |AA-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GAGAA---UG C|CCU-Cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-gcacuc uac--)---- 1261 ---------- ---------- ---g--auc- a-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACACU- -----(acaa ---------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--UAA C|ACCUU-GC --|------- (-uag--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-UAUGAAC( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-GUUA-U- AU-UAA---- -acua----- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-A---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAA A------ccc ucCGGC|GUA AAGCGUGUC- -aaaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------c--- -ccauacuaa aauaaa--gu -----|UAAA acccaG-UUA ----AGCU(G 2341 UAAAA)AGCU AC-------A ACuaaagu-A AAA------- -----uaaac -uAC(-GAAA 2401 -)GU|g---- ----acuuua auacc----- ---------- ucuga-ccAC ACGAU-AGCU 2461 A-AGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCA 2521 A--AAUA-GC |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a cca(uaac)a a---A-GCUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC CUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CCUCUAGA|G GAGCCUGU-U |CCGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCCCACC AUCCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A A-ACA)AGG- -----(uac- 3181 ca-)------ A-AGUAAGCA CAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ccaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 G-G-AU-GG- AG-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-cu cu---)---- ---------- ---------- AAG-AAcaag 4021 aacu-c---a acccaaACGG --AAGUC-UC C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-AG-A--GA -C--CGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UCA--GGCC 4261 AUGAAG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU U--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaua---- 4381 uua----caa aucacaaua- -uuacacaaa --accaugau cca-aaca-- -uauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- AAGG-AGA-C AAGUCGUAAC AAGGUAAG-U AUA-CC(GGA 4621 -A)GGU-GU- ACUUGGAUAA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.E.grevy 5213 bp RNA RNA 11-JAN-191 DEFINITION Equus grevyi. ACCESSION No information KEYWORDS No information. SOURCE Equus grevyi. ORGANISM Equus grevyi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X86943 LOCUS EG12SRRNA 975 bp DNA MAM 01-SEP-1995 DEFINITION E.grevyi mitochondrial 12S rRNA gene. ACCESSION X86943 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Grevy's zebra. ORGANISM Mitochondrion Equus grevyi Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Sarcopterygii; Mammalia; Eutheria; Perissodactyla; Equidae; Equus; Dolichohippus. REFERENCE 1 (bases 1 to 975) AUTHORS Douzery,E. and Catzeflis,F.M. TITLE Molecular evolution of the mitochondrial 12S rRNA in Ungulata (Mammalia) JOURNAL Unpublished REFERENCE 2 (bases 1 to 975) AUTHORS Douzery,E. TITLE Direct Submission JOURNAL Submitted (03-MAY-1995) to the EMBL/GenBank/DDBJ databases. E. Douzery, Laboratoire de Paleontologie, URA 327 CNRS, Inst.d. Sciences de l'Evolution CC064, Univ.Montpellier 2, Place E. Bataillon, F - 34095 Montpellier, FRANCE COMMENT NCBI gi: 974818 FEATURES Location/Qualifiers source 1..975 /organism="Equus grevyi" /isolate="Extr. 4125L" /mitochondrion rRNA 1..975 /gene="12 rRNA" /product="12S ribosomal RNA" BASE COUNT 354 a 237 c 176 g 208 t ORIGIN BASE COUNT 354 a 237 c 176 g 208 t 4238 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --gauAGGCU 661 (UGG-)U-CC U|AGCCU-UU UUA-UUAGUU -A-UUAA-UA |GA-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GAGAA---UG C|CCU-Cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-gcacuc cac--)---- 1261 ---------- ---------- ---g--auc- a-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACACU- -----(agaa ---------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--UGA C|ACCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-UAUGAAC( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-GUUA-U- AU-UAA---- -auua----- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-A---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAA A-------cc ccCGGC|GUA AAGCGUGUC- -aaaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------c--- -cuaugccaa aauaaa--gu -----|UAAA acccaG-UUA ----AGCU(G 2341 UAAAA)AGCU AC-------A ACcaaagu-A AAA------- -----uagac -uAC(-GAAA 2401 -)GU|g---- ----acuuua augcc----- ---------- ucuga-ucAC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CUA 2521 A--AAUA-AC |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a uca(caac)a a---A-GUUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC CUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CCUCUAGA|G GAGCCUGU-U |CCAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCCCACC AUCCCUUGCU ---------- ---------- 2881 (-------aa uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A A-ACA)AGG- -----(cac- 3181 cg-)------ A-AGUAAGCA CAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ccaac- 3781 ---------A UGAAAA-CGU U-AGGUCAAG G|UGUA|GCU CAU------- ---------G 3841 G-G-AU-GG- AG-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-cu cu---)---- ---------- ---------- AAG-AAcaag 4021 aacuu----a acccaaACGA --AAGUC-UC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-GG-A--GA -C--CGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 AUGAAG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU U--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaua---- 4381 uca----caa aucaccagua -uaacacaaa --accgugac cca-aaca-- -uauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- AAGG-AGA-C AAGUCGUAAC AAGGUAAG-U AUA-CC(GGA 4621 -A)GGU-GU- ACUUGGAUAA CC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.E.cabal 5213 bp RNA RNA 22-NOV-1994 DEFINITION Mitochondrion Equus caballus.; 12S ribosomal RNA; 16S ribosomal RNA; ATPase; ATPase 6; ATPase 8; control region; cytochrome b; cytochrome c oxidase; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; NADH dehydrogenase; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu; tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser; tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. ACCESSION X79547 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; ATPase; ATPase 6; ATPase 8; control region; cytochrome b; cytochrome c oxidase; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; NADH dehydrogenase; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu; tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser; tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Mitochondrion Equus caballus. ORGANISM Mitochondrion Equus caballus. REFERENCE 1 (bases 1 to 16660) AUTHORS Xu,X. and Arnason,U. TITLE caballus: extensive heteroplasmy of the control region The complete mitochondrial DNA sequence of the horse, Equus JOURNAL Gene 148, 357-362 (1994) STANDARD No information REFERENCE 2 (bases 1 to 16660) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (06-JUN-1994) to the EMBL/GenBank/DDBJ databases. U. Arnason, University of Lund, Dept. of Genetics, Division Evolutionary Molec. Systematics, Solvegatan 29, 223 62 Lund, SWEDEN STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X79547 NCBI gi: 577571 BASE COUNT 358 a 235 c 172 g 210 t 4238 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cauAGGCU 661 (UGG-)U-CC U|AGCCU-UU UUA-UUAGUU -A-UUAA-UA |GA-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GAGAA---UG C|CCU-Cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(acgucuc uac--)---- 1261 ---------- ---------- ---g--auu- a-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACACU- -----(agaa ---------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--UAA C|ACCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-UAUGAAC( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-GUCA-U- AU-UAA---- -auaa----- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAA A-------uc ucCGGC|GUA AAGCGUGUC- -aaaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------c--- -uaauaccaa aauaaa--gu -----|UAAA acccaG-UUA ----AGCC(G 2341 UAAAA)AGCU AC-------A ACcaaagu-A AAA------- -----uagac -uAC(-GAAA 2401 -)GU|g---- ----acuuua auacc----- ---------- ucuga-cuAC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CUA 2521 A--AAUA-GC |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a cca(caac)a a---A-GCUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC CUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CCUCUAGA|G GAGCCUGU-U |CCAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCCCACC AUCCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A A-ACA)AGG- -----(uac- 3181 cg-)------ A-AGUAAGCA CAA-AUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ccaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 G-G-AU-GG- AG-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-cc cu---)---- ---------- ---------- AAG-AAcaag 4021 aacuuu---a acccggACGA --AAGUC-UC C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-GG-A--GA -C--UAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UCA--GGCC 4261 AUGAAG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU U--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaua---- 4381 uca----caa aucauaaca- -uaacauaaa --accgugac cca-aaca-- -uauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- AAGG-AGA-C AAGUCGUAAC AAGGUAAG-U AUA-CC(GGA 4621 -A)GGU-GU- ACUUGGAUAA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.E.hemio 5213 bp RNA RNA 18-JAN-1993 DEFINITION Equus hemionus.; ribosomal RNA; ribosomal RNA small subunit. ACCESSION Z18644 KEYWORDS ribosomal RNA; ribosomal RNA small subunit. SOURCE Equus hemionus. ORGANISM Equus hemionus. REFERENCE 1 (bases 1 to 378) AUTHORS Milinkovitch,M.C., Orti,G. and Meyer,A. TITLE ribosomal DNA sequences Revised phylogeny of whales suggested by mitochondrial JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 378) AUTHORS Milinkovitch,M.C. TITLE Direct Submission JOURNAL Submitted (19-NOV-1992) to the EMBL/GenBank/DDBJ databases. Michel C Milinkovitch, Free University of Brussels (ULB), I.R.I.B.H.N., route de Lennik 808, Bat.C, Brussels, Brussels, 1070, Belgium STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z18644 NCBI gi: 1075 BASE COUNT 137 a 88 c 68 g 85 t 4835 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~--)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~~~~)-~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~~~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~~~~~~~~C- CCUAAA-CUA 2521 A--AAUA-AC |Uc|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a uca(caac)a a---A-GUUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC CUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CCAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCCUACC AUCCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A A-ACA)AGG- -----(uac- 3181 cg-)------ A-AGUAAGCA CAA-ACAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ccaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 G-G-AU-GG- AG-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-cu cu---)---- ---------- ---------- AAG-AAcaag 4021 aauuuaa--- -cccagACGG --AAGUC-UC C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-GG-A--GA -C--CGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.sim.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Ceratotherium simum. ACCESSION No information KEYWORDS No information. SOURCE Ceratotherium simum. ORGANISM Ceratotherium simum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X86942 LOCUS CS12SRRNA 973 bp DNA MAM 01-SEP-1995 DEFINITION C.simum mitochondrial 12S rRNA gene. ACCESSION X86942 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE white rhinoceros. ORGANISM Mitochondrion Ceratotherium simum Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Sarcopterygii; Mammalia; Eutheria; Perissodactyla; Rhinocerotidae; Ceratotherium. REFERENCE 1 (bases 1 to 973) AUTHORS Douzery,E. and Catzeflis,F.M. TITLE Molecular evolution of the mitochondrial 12S rRNA in Ungulata (Mammalia) JOURNAL Unpublished REFERENCE 2 (bases 1 to 973) AUTHORS Douzery,E. TITLE Direct Submission JOURNAL Submitted (03-MAY-1995) to the EMBL/GenBank/DDBJ databases. E. Douzery, Laboratoire de Paleontologie, URA 327 CNRS, Inst.d. Sciences de l'Evolution CC064, Univ.Montpellier 2, Place E. Bataillon, F - 34095 Montpellier, FRANCE COMMENT NCBI gi: 974806 FEATURES Location/Qualifiers source 1..973 /organism="Ceratotherium simum" /mitochondrion /isolate="Extr. 4128L" rRNA 1..973 /gene="12S rRNA" /product="12S ribosomal RNA" BASE COUNT 361 a 235 c 167 g 210 t ORIGIN BASE COUNT 361 a 235 c 167 g 210 t 4240 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UU CUA-UUGAUU -G-UUAG-UA |AA-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCUAGU GAAAA---UG C|CCU-Cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(accccua ac---)---- 1261 ---------- ---------- ---g--auu- a-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACACU- -----(aaaa c--------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--CAA C|ACCUU-GC --|------- (-uca--)-- -------AC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-UAAaca- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAG A-------ac uuCGGC|GUA AAGCGUGUC- -aaaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------uacg -accac---a aauaaa--gu -----|UAAA auuuaa-UUG ----AGCU(G 2341 UAAAA)AGCU AC-------A Acca-aaauA AAA------- -----uagac -uAC(-GAAA 2401 -)GU|g---- ----acuuua auaca----- ---------- acc-gcccAC ACGAC-AGCU 2461 A-GGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CUUAAA-CCU 2521 A--AAUA-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- cuc(caac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC CUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCCCUAGA|G GAGCCUGU-U |CCAUA--AC CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCCCACC AACCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aac- 3181 ua-)------ A-AGUAAGCA CAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aaaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU UAU------- ---------G 3841 G-G-AU-GG- AG-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu uu---)---- ---------- ---------- AAG-AAcaac 4021 aauuag---c cca--aACGA --AGGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) C-AA-A--AA -C--UAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCC 4261 AUAAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU U--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaua---- 4381 -cccc-gagc cuacaacuca a-(-caua)- uuaacuccgc auuacacg-- -uauaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- AAGG-AGA-C AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGACAA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.sim.2 5213 bp RNA RNA 25-APR-1997 DEFINITION Mitochondrion Ceratotherium simum.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase 6 gene; ATPase 8 gene; COI gene; COII gene; COIII gene; control region; cytb gene; cytochrome b; cytochrome oxidase I; cytochrome oxidase II; NADH-ubiquinone oxidoreductase subunit I; NADH-ubiquinone oxidoreductase subunit II; NADH-ubiquinone oxidoreductase subunit III; NADH-ubiquinone oxidoreductase subunit IV; NADH-ubiquinone oxidoreductase subunit V; NADH-ubiquinone oxidoreductase subunit VI; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val; tRNA-Ala gene; tRNA-Arg gene; tRNA-Asn gene; tRNA-Asp gene; tRNA-Cys gene; tRNA-Gln gene; tRNA-Glu gene; tRNA-Gly gene; tRNA-His gene; tRNA-Ile gene; tRNA-Leu gene; tRNA-Lys gene; tRNA-Met gene; tRNA-Phe gene; tRNA-Pro gene; tRNA-Ser gene; tRNA-Thr gene; tRNA-Trp gene; tRNA-Tyr gene; tRNA-Val gene. ACCESSION Y07726 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase 6 gene; ATPase 8 gene; COI gene; COII gene; COIII gene; control region; cytb gene; cytochrome b; cytochrome oxidase I; cytochrome oxidase II; NADH-ubiquinone oxidoreductase subunit I; NADH-ubiquinone oxidoreductase subunit II; NADH-ubiquinone oxidoreductase subunit III; NADH-ubiquinone oxidoreductase subunit IV; NADH-ubiquinone oxidoreductase subunit V; NADH-ubiquinone oxidoreductase subunit VI; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val; tRNA-Ala gene; tRNA-Arg gene; tRNA-Asn gene; tRNA-Asp gene; tRNA-Cys gene; tRNA-Gln gene; tRNA-Glu gene; tRNA-Gly gene; tRNA-His gene; tRNA-Ile gene; tRNA-Leu gene; tRNA-Lys gene; tRNA-Met gene; tRNA-Phe gene; tRNA-Pro gene; tRNA-Ser gene; tRNA-Thr gene; tRNA-Trp gene; tRNA-Tyr gene; tRNA-Val gene. SOURCE Mitochondrion Ceratotherium simum. ORGANISM Mitochondrion Ceratotherium simum. REFERENCE 1 (bases 1 to 16832) AUTHORS Xu,X. and Arnason,U. TITLE The Complete Mitochondrial DNA Sequence of the White Rhinoceros, Ceratotherium simum, and Comparison with the mtDNA Sequence of the Indian Rhinoceros, Rhinoceros unicornis JOURNAL Mol. Phylogenet. Evol. 7, 189-194 (1977) STANDARD No information REFERENCE 2 (bases 1 to 16832) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (30-AUG-1996) U. Arnason, University of Lund, Dept. of Genetics, Division Evolutionary Molec. Systematics, Solvegatan 29, 223 62 Lund, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y07726 BASE COUNT 364 a 235 c 166 g 205 t 4243 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UU CUA-UUGAUU -G-UUAG-UA |AA-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCUAGU GAAAA---UG C|CCU-Cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(accccua ac---)---- 1261 ---------- ---------- ---g--auu- a-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACACU- -----(aaaa c--------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--CAA C|ACCUU-GC --|------- (-uca--)-- -------AC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-UAAaca- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAG A-------ac uuCGGC|GUA AAGCGUGUC- -aaaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------uacg -accac---a aauaaa--gu -----|UAAA acccaa-UUG ----AGCU(G 2341 UAAAA)AGCU AC-------A Acca-aaauA AAA------- -----uagac -uAC(-GAAA 2401 -)GU|g---- ----acuuua auaca----- ---------- acc-gcccAC ACGAC-AGCU 2461 A-GGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CUUAAA-CCU 2521 A--AAUA-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- cuc(caac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC CUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCCCUAGA|G GAGCCUGU-U |CCAUA--AC CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCCCACC AACCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aac- 3181 ua-)------ A-AGUAAGCA CAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aaaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU UAU------- ---------G 3841 G-G-AU-GG- AG-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu uu---)---- ---------- ---------- AAG-AAcaac 4021 aauua----c cca--aACGA --AGGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) C-AA-A--AA -C--UAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCA--GGCC 4261 AUAAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU U--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaua---- 4381 -cccc-gagc c-acaacaca a-(-caua)- uuaacuacgc auuacacg-- -uauaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- AAGG-AGA-C AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGACAA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.unico 5213 bp RNA RNA 23-JUL-1997 DEFINITION Mitochondrion Rhinoceros unicornis.; 12S rRNA; 16S rRNA; ATPase subunit 6; ATPase subunit 8; control region; cytochrome b; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; NADH subunit 1; NADH subunit 2; NADH subunit 3; NADH subunit 4; NADH subunit 4L; NADH subunit 5; NADH subunit 6; origin of light-strand replication; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. ACCESSION X97336 KEYWORDS 12S rRNA; 16S rRNA; ATPase subunit 6; ATPase subunit 8; control region; cytochrome b; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; NADH subunit 1; NADH subunit 2; NADH subunit 3; NADH subunit 4; NADH subunit 4L; NADH subunit 5; NADH subunit 6; origin of light-strand replication; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Mitochondrion Rhinoceros unicornis. ORGANISM Mitochondrion Rhinoceros unicornis. REFERENCE 1 (bases 1 to 16829) AUTHORS Xu,X., Janke,A. and Arnason,U. TITLE and Artiodactyla (+ Cetacea) The complete mitochondrial DNA sequence of the greater Indian rhinoceros, Rhinoceros unicornis, and the Phylogenetic relationship among Carnivora, Perissodactyla, JOURNAL Mol. Biol. Evol. 13 (9), 1167-1173 (1996) STANDARD No information REFERENCE 2 (bases 1 to 16829) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (18-APR-1996) U. Arnason, University of Lund, Dept of Genetics, Division of Evolutionary Molecular, Systematics, Solvegatan 29, 22362 Lund, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X97336 Users are requested to refer to the citation of this entry as well as the accession number in their publications. BASE COUNT 368 a 228 c 162 g 213 t 4242 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cauAGGUU 661 (UGG-)U-CC U|AGCCU-UU CUA-UUAACU -A-UUAG-UA |AA-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACUCCAGU GAGAA---UG C|CCU-Cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(acccaua ac---)---- 1261 ---------- ---------- ---g--auu- a-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGUACACU- -----(aaua ac-------- ---------- ---------- ------)--- 1381 --AGU|---A GCUAA--CAA C|ACCUU-GC --|------- (-uca--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AC AAAAAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-UAAgca- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -GAC-UCA-- 1981 AAUUA-AUAG A-------ac cuCGGC|GUA AAGCGUGUC- -aaaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------uaua -acccc---u aauaaa--gu -----|UAAA aacaua-GUu a---AGCU(G 2341 UAAAA)AGCU AU-------A Acca-agauA AAA------- -----uaaac -cAC(-GAAA 2401 -)GU|g---- ----acuuua auau------ ---------- auc-acccAC ACUAC-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCCAAA-CUC 2521 A--AAUA-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------u ucc(caac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC CUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCCCUAGA|G GAGCCUGU-U |CCAUA--AC CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUUACC AGCCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CC AAC-|CCU(A --AAA)AGG- -----(aac- 3181 ca-)------ A-AGUAAGCA CAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aagac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU UAU------- ---------G 3841 G-G-AU-GG- AG-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-cu uc---)---- ---------- ---------- AAG-AAcaac 4021 aacua----c cca--aACGA --AGGCU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-AA-A--AG -C--UAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCA--GGCC 4261 AUAAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU U--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaua---- 4381 --uca-uaaa ccacaacaca a-(-caua)- uuaac----g uacguugaac auauaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- AAGG-AGA-C AAGUCGUAAC AAGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGAUAA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.pinch 5213 bp RNA RNA 15-DEC-1997 DEFINITION Mitochondrion Tapirus pinchaque.; . ACCESSION AF0380 2 KEYWORDS . SOURCE Mitochondrion Tapirus pinchaque. ORGANISM Mitochondrion Tapirus pinchaque. REFERENCE 1 (bases 1 to 971) AUTHORS Springer,M.S. TITLE boundary Molecular clocks and the timing of the placental and marsupial radiations in relation to the Cretaceous-Tertiary JOURNAL J. Mammal. Evol. 4 (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 971) AUTHORS Springer,M.S. TITLE Direct Submission JOURNAL Submitted (09-DEC-1997) Biology, University of California, 1354 Spieth, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038012 BASE COUNT 375 a 214 c 158 g 224 t 4242 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cacAGGUU 661 (UGG-)U-CC U|AGCCU-UU AUA-UUAAUU -G-UUAA-UA |AA-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GAAAA---UG C|CCU-Ccaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(ac-auua ac---)---- 1261 ---------- ---------- ---g--auc- a-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACGCU- -----(aaau u--------- ---------- ---------- ------)--- 1381 --AGC|---A GCUUA--CAA C|ACCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAa----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-GUUA-U- AU-UAAauca ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAU A--------c ucCGGC|GUA AAGAGUGUC- -aaaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------uaua -uacaua--u aauaaa--gu -----|UAAA aacuaa-CUA ----AGCU(G 2341 UAAAA)AGCC AC------aG Cgaa-aaauA AAA------- -----uaaac -uAC(-GAAA 2401 -)GU|g---- ----acuuua acacc----- ---------- ucu-gacuAC ACGAC-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CUA 2521 A--AAUA-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- auc(caac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CCAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUUACC AUCCCUUGCC ---------- ---------- 2881 (-------aa ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(acu- 3181 ca-)------ A-AGUAAGCA CAA-AUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aagac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 G-G-AU-GG- AG-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c uc---)---- ---------- ---------- AAG-AAcaac 4021 acaacu---c auua-cACGA --AAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-GA-A--AA -C--UAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU U--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaua---- 4381 --uua-caua cuacaa--cu ua(acaua)u aacaa--uug u----uaaac auauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- AAGG-AGA-C AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GU- GCUUGGACAA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (19)-Pholi 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.Mani.sp 5213 bp RNA RNA 02-SEP-1996 DEFINITION Mitochondrion Manis sp.; . ACCESSION U61079 KEYWORDS . SOURCE Mitochondrion Manis sp. ORGANISM Mitochondrion Manis sp. REFERENCE 1 (bases 1 to 1024) AUTHORS Springer,M.S. and Douzery,E. TITLE mitochondrial 12S rRNA molecules Secondary structure and patterns of evolution among mammalian JOURNAL J. Mol. Evol. 43 (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 1024) AUTHORS Springer,M.S. TITLE Direct Submission JOURNAL Submitted (17-JUN-1996) University of California, Biology, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U61079 BASE COUNT 359 a 195 c 171 g 233 t 4255 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cauAGGUU 661 (UGG-)U-CC C|AGCCU-UU UUA-UUAGUU -U-AUGA-UA |AA-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCUACGGU GAAAA---CG C|CCU-uuag --cc-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---uac- -----)---- 1261 ---------- ---------- --aa--gu-- caaAAGGAGC |--------- UGGUAUCA-- 1321 -AGCACGCC- -----(aauu uaa------- ---------- ---------- ------)--- 1381 --GGC|---A GCUAG--UGA C|ACCUU-GC --|------- (-uuac-)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGA----C-A 1501 GCA|GUG-AU AAAAAUUAAA C-CAUUAAC( ---------- ----GAAA)G UUAGA-UUU| 1561 A|-GUUA-U- AU-CAU---u uau------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCU-- 1981 AAUUA-AUAA A-------aa accGGC|GUA AAAAGUGUCA -A-agu---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------gua -uuuaaauca aauaaa--au -----|UAAG CCC-UA-AUC a---AGCU(G 2341 UAAAA)AGCC UC-------g auua-uagua aaa------- ----auaaac -uAU(-GAAA 2401 -)AU|a---- ----auuuua ---auaaa-- ---------- acc--cACAC ACGAU-AGCU 2461 A-AGA---uc CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCU 2521 A--AAUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- auu(aaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AAUA--)GC UUG--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAUA-UC CCUCUAGA|G GAGCCUGU-C |CUAUA--AA CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AAUCCUAGCU ---------- ---------- 2881 (-------aa ug-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC CU-CA|G-CA AAC-|CCU(A a-uaa)AGG- -----(aac- 3181 ca-)------ U-AGUAAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --ugaaac-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU UAU------- ---------G 3841 G-A-UU-GG- GA-AGA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- CAG-AAuaag 4021 ---------- ------ACGA --AUACC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAa---) U-AA-G--GG -U--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA G-ACAAGA(- auaga-ga-- --)GCUUGAC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCC 4261 CUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaauuucca 4381 aaaaa-cag- -uaaauauau uaaugaa-ua acaa--gaau ga-------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAAG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)GGU-GU- GCUUGGAUAA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (19)-Prima 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (20)-Catar 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (21)-Cerco 5213 bp RNA RNA 25-JAN-1994 DEFINITION Cercopithecidae. ACCESSION No information KEYWORDS No information. SOURCE Cercopithecidae. ORGANISM Cercopithecidae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.C.aterr 5213 bp RNA RNA 11-JAN-191 DEFINITION Cercocebus aterrimus. ACCESSION No information KEYWORDS No information. SOURCE Cercocebus aterrimus. ORGANISM Cercocebus aterrimus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L35192 ID MICARGZA unannotated; DNA; ORG; 391 BP. XX AC L35192; XX DT 25-NOV-1994 (Rel. 41, Created) DT 25-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE Mitochondrion Cercocebus aterrimus (isolate PAN) 12S ribosomal RNA DE (12S rRNA) gene. XX KW 12S ribosomal RNA. XX OS Cercocebus aterrimus OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; OC Theria; Eutheria; Primates; Haplorhini; Catarrhini; OC Cercopithecidae; Cercopithecinae. XX OG Mitochondrion XX RN [1] RP 1-391 RA Der Kuyl A.C., Kuiken C.L., Dekker J.T., Goudsmit J.; RT "Phylogeny of African monkeys based upon mitochondrial 12S rRNA RT sequences"; RL Unpublished. XX CC NCBI gi: 521172 XX FH Key Location/Qualifiers FH FT rRNA 1..391 FT /product="12S ribosomal RNA" FT /gene="12S rRNA" FT source 1..391 FT /organism="Cercocebus aterrimus" FT /isolate="PAN" FT /mitochondrion FT /sequenced_mol="DNA" FT /tissue_type="plasma" XX SQ Sequence 391 BP; 133 A; 105 C; 70 G; 83 T; 0 other; BASE COUNT 133 a 105 c 70 g 83 t 4822 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~- -~~~~)~~~~ 1261 ~~~~~~~~~~ ---------- ---~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCCU-GGC- CUUAAA-CCU 2521 U--AAUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(caac)a a---A-ACUA 2701 U-U|--C|GC C-AGAA-UAC UACAAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAUA--C CCCCUAGA|G GAGCCUGU-U |CCAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC C-ACCCCACC CUCUCUUGCC ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G A-CGA)AGG- -----(cca- 3181 cg-)------ A-AGUGAGCG CAA-AUGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cc--- 3781 uuaccc---G CAAAAA-CGU U-AGGUCAAG G|UGUA|ACC CAU------- ---------G 3841 A-G-AC-GG- UA-AAA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c cu---)---- ---------- ---------- CAG-AAaac- 4021 ---------c cc----ACGA --UAACU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-c-) U-AA-G--AG -U--CCAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- AUAGA-GU-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUA--GGCC 4261 AUAAAG-CA- CGC~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.cephu 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Cercopithecus cephus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Cercopithecus cephus. ORGANISM Mitochondrion Cercopithecus cephus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L35191 ID MICCRGZM standard; DNA; ORG; 392 BP. XX AC L35191; XX DT 25-NOV-1994 (Rel. 41, Created) DT 25-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE Mitochondrion Cercopithecus cephus (isolate CC21) 12S ribosomal RNA DE (12S rRNA) gene. XX KW 12S ribosomal RNA. XX OS Cercopithecus cephus OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; OC Theria; Eutheria; Primates; Haplorhini; Catarrhini; OC Cercopithecidae; Cercopithecinae. XX OG Mitochondrion XX RN [1] RP 1-392 RA Der Kuyl A.C., Kuiken C.L., Dekker J.T., Goudsmit J.; RT "Phylogeny of African monkeys based upon mitochondrial 12S rRNA RT sequences"; RL Unpublished. XX CC NCBI gi: 521165 XX FH Key Location/Qualifiers FH FT rRNA 1..392 FT /product="12S ribosomal RNA" FT /gene="12S rRNA" FT source 1..392 FT /organism="Cercopithecus cephus" FT /isolate="CC21" FT /mitochondrion FT /sequenced_mol="DNA" FT /tissue_type="plasma" XX SQ Sequence 392 BP; 129 A; 102 C; 74 G; 87 T; 0 other; BASE COUNT 129 a 102 c 74 g 87 t 4821 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~- -~~~~)~~~~ 1261 ~~~~~~~~~~ ---------- ---~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCUU-AGC- CCUAAA-CCU 2521 C--AGUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- gaa(caac)a a---A-ACUA 2701 C-U|--C|GC C-AGAA-UAC UACAAGC(-- -AAUG--)GC UUG--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-UC CCCCUAGA|G GAGCCUGU-C |CCAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC C-ACCCCACC CUCUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G A-UAA)AGG- -----(cug- 3181 ca-)------ A-AGUGAGCG CAA-AUGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cca-- 3781 -uuuuc---A CAAAAA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-AU-GG- UA-AAA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c cu---)---- ---------- ---------- CAG-AAaac- 4021 ---------c cu----ACGA --UAGCU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-c-) U-AA-G--AG -C--CCAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- AUAGA-GU-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUA--GGCC 4261 AUAAAG-CA- CGC~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.galer 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Cercopithecus galeritus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Cercopithecus galeritus. ORGANISM Mitochondrion Cercopithecus galeritus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L35208 ID MICGRGB standard; DNA; ORG; 389 BP. XX AC L35208; XX DT 25-NOV-1994 (Rel. 41, Created) DT 25-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE Mitochondrion Cercopithecus galeritus (isolate AMANG3) 12S DE ribosomal RNA (12S rRNA) gene. XX KW 12S ribosomal RNA. XX OS Cercocebus galeritus OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; OC Theria; Eutheria; Primates; Haplorhini; Catarrhini; OC Cercopithecidae; Cercopithecinae. XX OG Mitochondrion XX RN [1] RP 1-389 RA Der Kuyl A.C., Kuiken C.L., Dekker J.T., Goudsmit J.; RT "Phylogeny of African monkeys based upon mitochondrial 12S rRNA RT sequences"; RL Unpublished. XX CC NCBI gi: 521171 XX FH Key Location/Qualifiers FH FT rRNA 1..389 FT /product="12S ribosomal RNA" FT /gene="12S rRNA" FT source 1..389 FT /organism="Cercocebus galeritus" FT /isolate="AMANG3" FT /mitochondrion FT /sequenced_mol="DNA" FT /tissue_type="plasma" XX SQ Sequence 389 BP; 127 A; 101 C; 72 G; 89 T; 0 other; BASE COUNT 127 a 101 c 72 g 89 t 4824 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~- -~~~~)~~~~ 1261 ~~~~~~~~~~ ---------- ---~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCUU-AGC- CUUAAA-CCU 2521 C--AAUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ua(uaac)a a---A-ACUA 2701 U-U|--C|GC C-AGAA-UAC UACAAGC(-- -AACA--)GC UUG--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAU--UC CCCCUAGA|G GAGCCUGU-U |CCAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC C-ACCCCACC CUCUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G A-UAA)AGG- -----(uua- 3181 ca-)------ A-AGUGAGCG CAA-AUGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cc--- 3781 -ccacc---G CAAAAA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-AU-GG- UA-AAA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c cu---)---- ---------- ---------- CAG-AAaac- 4021 ---------c cu----ACGA --UACCU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-c-) U-AA-G--AG -C--CCAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UCAAGA(- AUAGA-GU-- --)GCUUGAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUA--GGCC 4261 AUGAAG-CG- CGU~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.mitis 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Cercopithecus mitis. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Cercopithecus mitis. ORGANISM Mitochondrion Cercopithecus mitis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L35197 ID MICMRGZN unannotated; DNA; ORG; 392 BP. XX AC L35197; XX DT 25-NOV-1994 (Rel. 41, Created) DT 25-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE Mitochondrion Cercopithecus mitis (isolate CM195) 12S ribosomal RNA DE (12S rRNA) gene. XX KW 12S ribosomal RNA. XX OS Cercopithecus mitis OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; OC Theria; Eutheria; Rodentia; Sciuromorpha; Geomyidae. XX OG Mitochondrion XX RN [1] RP 1-392 RA Der Kuyl A.C., Kuiken C.L., Dekker J.T., Goudsmit J.; RT "Phylogeny of African monkeys based upon mitochondrial 12S rRNA RT sequences"; RL Unpublished. XX CC NCBI gi: 521166 XX FH Key Location/Qualifiers FH FT rRNA 1..392 FT /product="12S ribosomal RNA" FT /gene="12S rRNA" FT source 1..392 FT /organism="Cercopithecus mitis" FT /isolate="CM195" FT /mitochondrion FT /sequenced_mol="DNA" FT /tissue_type="plasma" XX SQ Sequence 392 BP; 131 A; 104 C; 72 G; 85 T; 0 other; BASE COUNT 131 a 104 c 72 g 85 t 4821 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~- -~~~~)~~~~ 1261 ~~~~~~~~~~ ---------- ---~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCUU-AGC- CUUAAA-CCU 2521 C--AGUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(caac)a a---A-ACUA 2701 C-U|--C|GC C-AGAA-UAC UACAAGC(-- -AACG--)GG UUG--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-UC CCCCUAGA|G GAGCCUGU-C |CCGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC C-ACCUAACC CUCUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G A-UAA)AGG- -----(uua- 3181 ca-)------ A-AGUGAGCG CAA-AUGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cu--- 3781 cccuuc---G CAAAAA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-AC-GG- UA-AAA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c cu---)---- ---------- ---------- CAG-AAaac- 4021 ---------c cu----ACGA --CAACU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-G--AA -U--CCAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- AUAGA-GC-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUA--GGCC 4261 AUAAAG-CA- CGC~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.diana 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Cercopithecus diana. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Cercopithecus diana. ORGANISM Mitochondrion Cercopithecus diana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L35193 ID MICDRGZF unannotated; DNA; ORG; 390 BP. XX AC L35193; XX DT 25-NOV-1994 (Rel. 41, Created) DT 25-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE Mitochondrion Cercopithecus diana (isolate CDR9) 12S ribosomal RNA DE (12S rRNA) gene. XX KW 12S ribosomal RNA. XX OS Cercopithecus dianae OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; OC Theria; Eutheria; Primates; Haplorhini; Catarrhini; OC Cercopithecidae; Cercopithecinae. XX OG Mitochondrion XX RN [1] RP 1-390 RA Der Kuyl A.C., Kuiken C.L., Dekker J.T., Goudsmit J.; RT "Phylogeny of African monkeys based upon mitochondrial 12S rRNA RT sequences"; RL Unpublished. XX CC NCBI gi: 521158 XX FH Key Location/Qualifiers FH FT rRNA 1..390 FT /product="12S ribosomal RNA" FT /gene="12S rRNA" FT source 1..390 FT /organism="Cercopithecus dianae" FT /isolate="CDR9" FT /mitochondrion FT /sub_species="roloway" FT /sequenced_mol="DNA" FT /tissue_type="plasma" XX SQ Sequence 390 BP; 129 A; 106 C; 72 G; 83 T; 0 other; BASE COUNT 129 a 106 c 72 g 83 t 4823 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~- -~~~~)~~~~ 1261 ~~~~~~~~~~ ---------- ---~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCUU-AGC- CCUAAA-CCU 2521 C--AGUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ga(caac)a a---A-ACUA 2701 C-U|--C|GC C-AGAA-UAC UACAAGC(-- -AACA--)GC UUG--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA--C CCCCUAGA|G GAGCCUGU-C |CCGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC C-ACCCCACC CUCUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|UCU(G A-UAA)AGA- -----(cua- 3181 ca-)------ A-AGUGAGCG CAA-AUGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cc--- 3781 uuccuc---G CAAAAA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-AC-GG- UA-AAA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u cu---)---- ---------- ---------- CAG-AAaac- 4021 ---------c cc----ACGA --UAACU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-G--AG -U--CCAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- AUAGA-GU-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUA--GGCC 4261 AUAAAG-CA- CGC~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.mona 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Cercopithecus mona. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Cercopithecus mona. ORGANISM Mitochondrion Cercopithecus mona. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L35198 ID MICMRGZH unannotated; DNA; ORG; 392 BP. XX AC L35198; XX DT 25-NOV-1994 (Rel. 41, Created) DT 25-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE Mitochondrion Cercopithecus mona (isolate MON4) 12S ribosomal RNA DE (12S rRNA) gene. XX KW 12S ribosomal RNA. XX OS Cercopithecus mona OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; OC Theria; Eutheria; Rodentia; Sciuromorpha; Geomyidae. XX OG Mitochondrion XX RN [1] RP 1-392 RA Der Kuyl A.C., Kuiken C.L., Dekker J.T., Goudsmit J.; RT "Phylogeny of African monkeys based upon mitochondrial 12S rRNA RT sequences"; RL Unpublished. XX CC NCBI gi: 521160 XX FH Key Location/Qualifiers FH FT rRNA 1..392 FT /product="12S ribosomal RNA" FT /gene="12S rRNA" FT source 1..392 FT /organism="Cercopithecus mona" FT /isolate="MON4" FT /mitochondrion FT /sequenced_mol="DNA" FT /tissue_type="plasma" XX SQ Sequence 392 BP; 132 A; 100 C; 71 G; 89 T; 0 other; BASE COUNT 132 a 100 c 71 g 89 t 4821 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~- -~~~~)~~~~ 1261 ~~~~~~~~~~ ---------- ---~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCUU-AGC- CCUAAA-CCU 2521 C--AGUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(caac)a a---A-ACCA 2701 C-U|--C|GC C-AGAA-UAC UACAAGC(-- -AACA--)GC UUG--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-UC CCCCUAGA|G GAGCCUGU-C |CCAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC C-ACCCUACC CUCUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G A-UAA)AGG- -----(uua- 3181 ca-)------ A-AGUGAGCG CAA-AUGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cuau- 3781 uuuc-----G CAAAAA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-AU-GG- UA-AAA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- CAG-AAaau- 4021 ---------c cu----ACGA --UAACU-CU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-G--AG -U--CCAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- AUAGA-GU-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUA--GGCC 4261 AUAAAG-CA- CGC~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.negle 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Cercopithecus neglectus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Cercopithecus neglectus. ORGANISM Mitochondrion Cercopithecus neglectus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L35182 ID MICNRGZA unannotated; DNA; ORG; 391 BP. XX AC L35182; XX DT 25-NOV-1994 (Rel. 41, Created) DT 25-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE Mitochondrion Cercopithecus neglectus (isolate Neg4) 12S ribosomal DE RNA (12S rRNA) gene. XX KW 12S ribosomal RNA. XX OS Cercopithecus neglectus OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; OC Theria; Eutheria; Primates; Haplorhini; Catarrhini; OC Cercopithecidae; Cercopithecinae. XX OG Mitochondrion XX RN [1] RP 1-391 RA Der Kuyl A.C., Kuiken C.L., Dekker J.T., Goudsmit J.; RT "Phylogeny of African monkeys based upon mitochondrial 12S rRNA RT sequences"; RL Unpublished. XX CC NCBI gi: 521153 XX FH Key Location/Qualifiers FH FT rRNA 1..391 FT /product="12S ribosomal RNA" FT /gene="12S rRNA" FT source 1..391 FT /organism="Cercopithecus neglectus" FT /isolate="NEG4" FT /mitochondrion FT /sequenced_mol="DNA" FT /tissue_type="plasma" XX SQ Sequence 391 BP; 131 A; 103 C; 71 G; 86 T; 0 other; BASE COUNT 131 a 103 c 71 g 86 t 4822 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~- -~~~~)~~~~ 1261 ~~~~~~~~~~ ---------- ---~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCUU-AGC- CCUAAA-CCU 2521 U--AGUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(caac)a a---A-ACUA 2701 C-U|--C|GC C-AGAA-UAC UACAAGC(-- -AACA--)GC UUG--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAUA--C CCCCUAGA|G GAGCCUGU-C |CCAUA--AU CG(AUAAACC 2821 C--------- ----)CGUUC U-ACCCUACC CUUUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G A-CAA)AGG- -----(uca- 3181 ca-)------ A-AGUGAGCG CAA-AUGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cc--- 3781 cuccuc---G CAAAAA-CGU U-AGGUCGAG G|UGUA|GCC CAU------- ---------G 3841 A-A-AU-GG- UA-AAA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c cc---)---- ---------- ---------- CAG-AAaaa- 4021 ---------u cc----ACGA --UAACU-CC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-c-) U-GG-G--AG -U--CCAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- AUAGA-AU-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUA--GGCC 4261 AUAAAG-CA- CGC~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.patas 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Cercopithecus patas. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Cercopithecus patas. ORGANISM Mitochondrion Cercopithecus patas. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L35186 ID MICPRGZL standard; DNA; ORG; 393 BP. XX AC L35186; XX DT 25-NOV-1994 (Rel. 41, Created) DT 25-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE Mitochondrion Cercopithecus patas (isolate PAT15) 12S ribosomal RNA DE (12S rRNA) gene. XX KW 12S ribosomal RNA. XX OS Cercopithecus patas OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; OC Theria; Eutheria; Primates; Haplorhini; Catarrhini; OC Cercopithecidae; Cercopithecinae. XX OG Mitochondrion XX RN [1] RP 1-393 RA Der Kuyl A.C., Kuiken C.L., Dekker J.T., Goudsmit J.; RT "Phylogeny of African monkeys based upon mitochondrial 12S rRNA RT sequences"; RL Unpublished. XX CC NCBI gi: 521164 XX FH Key Location/Qualifiers FH FT rRNA 1..393 FT /product="12S ribosomal RNA" FT /gene="12S rRNA" FT source 1..393 FT /organism="Cercopithecus patas" FT /isolate="PAT15" FT /mitochondrion FT /sequenced_mol="DNA" FT /tissue_type="plasma" XX SQ Sequence 393 BP; 131 A; 104 C; 73 G; 85 T; 0 other; BASE COUNT 131 a 104 c 73 g 85 t 4820 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~- -~~~~)~~~~ 1261 ~~~~~~~~~~ ---------- ---~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCUU-AGC- CUUAAA-CCA 2521 C--AGUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(caac)a a---A-ACUA 2701 C-U|--C|GC C-AGAA-UAC UACAAGC(-- -AACA--)GC UUG--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAUA-UC CCCCUAGA|G GAGCCUGU-C |CCAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC C-ACCCCACC CUCUCUCGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CG AAC-|CCU(G A-UAA)AGG- -----(uca- 3181 ca-)------ G-AGUGAGCA CAA-AUGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cc--- 3781 ccucuuc--G CAAAAA-CGU U-AGGUCAAG G|UGUA|GCU AAU------- ---------G 3841 A-G-AU-GG- UA-AAG--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u cu---)---- ---------- ---------- CAG-AAaac- 4021 ---------c cu----ACGA --CAACU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-G--AG -U--CCAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- AUAGA-GU-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUA--GGCC 4261 AUAAAG-CA- CGC~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.torqu 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Cercocebus torquatus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Cercocebus torquatus. ORGANISM Mitochondrion Cercocebus torquatus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L35204 ID MICTRGZB standard; DNA; ORG; 392 BP. XX AC L35204; XX DT 25-NOV-1994 (Rel. 41, Created) DT 25-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE Mitochondrion Cercocebus torquatus (isolate Gala) 12S ribosomal RNA DE (12S rRNA) gene. XX KW 12S ribosomal RNA. XX OS Cercocebus torquatus OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; OC Theria; Eutheria; Primates; Haplorhini; Catarrhini; OC Cercopithecidae; Cercopithecinae. XX OG Mitochondrion XX RN [1] RP 1-392 RA Der Kuyl A.C., Kuiken C.L., Dekker J.T., Goudsmit J.; RT "Phylogeny of African monkeys based upon mitochondrial 12S rRNA RT sequences"; RL Unpublished. XX CC NCBI gi: 521173 XX FH Key Location/Qualifiers FH FT rRNA 1..392 FT /product="12S ribosomal RNA" FT /gene="12S rRNA" FT source 1..392 FT /organism="Cercocebus torquatus" FT /isolate="Gala" FT /mitochondrion FT /sub_species="atys" FT /sequenced_mol="DNA" FT /tissue_type="plasma" XX SQ Sequence 392 BP; 128 A; 103 C; 73 G; 88 T; 0 other; BASE COUNT 128 a 103 c 73 g 88 t 4821 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~- -~~~~)~~~~ 1261 ~~~~~~~~~~ ---------- ---~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCUU-AGC- CUUAAA-CCU 2521 C--AAUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(-aac)a a---A-ACUA 2701 C-U|--C|GC C-AGAA-UAC UACAAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUAuUC CCCCUAGA|G GAGCCUGU-U |CCAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC C-ACCCUACC CUCUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G A-UGA)AGG- -----(cca- 3181 ca-)------ A-AGUGAGCG CAA-AUGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cc--- 3781 cccgcc---G CAAAAA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-AC-GG- UA-AAA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c cu---)---- ---------- ---------- CAG-AAaac- 4021 ---------c cu----ACGA --UACCU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-c-) U-AA-G--AG -U--CCAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- AUAGA-GU-- --)GCUUGAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUA--GGCC 4261 AUGAAG-CG- CGU~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.aet.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Chlorocebus aethiops. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Chlorocebus aethiops. ORGANISM Mitochondrion Chlorocebus aethiops. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L35207 ID MICARGZK standard; DNA; ORG; 392 BP. XX AC L35207; XX DT 25-NOV-1994 (Rel. 41, Created) DT 25-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE Mitochondrion Cercopithecus aethiops (isolate CAE9648) 12S DE ribosomal RNA (12S rRNA) gene. XX KW 12S ribosomal RNA. XX OS Cercopithecus aethiops (african green monkey) OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; OC Theria; Eutheria; Primates; Haplorhini; Catarrhini; OC Cercopithecidae; Cercopithecinae. XX OG Mitochondrion XX RN [1] RP 1-392 RA Der Kuyl A.C., Kuiken C.L., Dekker J.T., Goudsmit J.; RT "Phylogeny of African monkeys based upon mitochondrial 12S rRNA RT sequences"; RL Unpublished. XX CC NCBI gi: 521163 XX FH Key Location/Qualifiers FH FT rRNA 1..392 FT /product="12S ribosomal RNA" FT /gene="12S rRNA" FT source 1..392 FT /organism="Cercopithecus aethiops" FT /isolate="CAE9648" FT /mitochondrion FT /sub_species="pygerythrus" FT /sequenced_mol="DNA" FT /tissue_type="plasma" XX SQ Sequence 392 BP; 130 A; 107 C; 73 G; 82 T; 0 other; ID MICARGZG standard; DNA; ORG; 392 BP. XX AC L35194; XX DT 25-NOV-1994 (Rel. 41, Created) DT 25-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE Mitochondrion Cercopithecus aethiops (isolate RIVM03) 12S ribosomal DE RNA (12S rRNA) gene. XX KW 12S ribosomal RNA. XX OS Cercopithecus aethiops (african green monkey) OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; OC Theria; Eutheria; Primates; Haplorhini; Catarrhini; OC Cercopithecidae; Cercopithecinae. XX OG Mitochondrion XX RN [1] RP 1-392 RA Der Kuyl A.C., Kuiken C.L., Dekker J.T., Goudsmit J.; RT "Phylogeny of African monkeys based upon mitochondrial 12S rRNA RT sequences"; RL Unpublished. XX CC NCBI gi: 521159 XX FH Key Location/Qualifiers FH FT rRNA 1..392 FT /product="12S ribosomal RNA" FT /gene="12S rRNA" FT source 1..392 FT /organism="Cercopithecus aethiops" FT /isolate="RIVM03" FT /mitochondrion FT /sub_species="pygerythrus" FT /sequenced_mol="DNA" FT /tissue_type="plasma" XX SQ Sequence 392 BP; 131 A; 105 C; 73 G; 83 T; 0 other; ID MICARGZE standard; DNA; ORG; 392 BP. XX AC L35190; XX DT 25-NOV-1994 (Rel. 41, Created) DT 25-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE Mitochondrion Cercopithecus aethiops (isolate V389) 12S ribosomal DE RNA (12S rRNA) gene. XX KW 12S ribosomal RNA. XX OS Cercopithecus aethiops (african green monkey) OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; OC Theria; Eutheria; Primates; Haplorhini; Catarrhini; OC Cercopithecidae; Cercopithecinae. XX OG Mitochondrion XX RN [1] RP 1-392 RA Der Kuyl A.C., Kuiken C.L., Dekker J.T., Goudsmit J.; RT "Phylogeny of African monkeys based upon mitochondrial 12S rRNA RT sequences"; RL Unpublished. XX CC NCBI gi: 521157 XX FH Key Location/Qualifiers FH FT rRNA 1..392 FT /product="12S ribosomal RNA" FT /gene="12S rRNA" FT source 1..392 FT /organism="Cercopithecus aethiops" FT /isolate="V389" FT /mitochondrion FT /sub_species="pygerythrus" FT /sequenced_mol="DNA" FT /tissue_type="plasma" XX SQ Sequence 392 BP; 128 A; 105 C; 75 G; 84 T; 0 other; BASE COUNT 130 a 107 c 73 g 82 t 4821 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~- -~~~~)~~~~ 1261 ~~~~~~~~~~ ---------- ---~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCUU-AGC- CCUAAA-CCU 2521 C--AGUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aac(caac)a a---A-ACUA 2701 C-U|--C|GC C-AGAA-UAC UACAAGC(-- -AACC--)GC UUG--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-CC CUCCUAGA|G GAGCCUGU-C |CCAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC C-ACCCCACC CUCUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G A-UAA)AGG- -----(uca- 3181 aca)------ A-AGUGAGCG CAA-GUGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cc--- 3781 cuucuc---G CAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-G-AU-GG- AA-AAA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c cc---)---- ---------- ---------- CAG-AAaac- 4021 ---------c c-----ACGA --UAACU-CU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-G--AG -U--CUAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- AUAGA-GU-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CGA--GGCC 4261 AUAAAG-CA- CGC~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.aet.2 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Chlorocebus aethiops. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Chlorocebus aethiops. ORGANISM Mitochondrion Chlorocebus aethiops. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L35189 ID MICARGZD standard; DNA; ORG; 391 BP. XX AC L35189; XX DT 25-NOV-1994 (Rel. 41, Created) DT 25-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE Mitochondrion Cercopithecus aethiops (isolate TAN98) 12S ribosomal DE RNA (12S rRNA) gene. XX KW 12S ribosomal RNA. XX OS Cercopithecus aethiops (african green monkey) OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; OC Theria; Eutheria; Primates; Haplorhini; Catarrhini; OC Cercopithecidae; Cercopithecinae. XX OG Mitochondrion XX RN [1] RP 1-391 RA Der Kuyl A.C., Kuiken C.L., Dekker J.T., Goudsmit J.; RT "Phylogeny of African monkeys based upon mitochondrial 12S rRNA RT sequences"; RL Unpublished. XX CC NCBI gi: 521156 XX FH Key Location/Qualifiers FH FT rRNA 1..391 FT /product="12S ribosomal RNA" FT /gene="12S rRNA" FT source 1..391 FT /organism="Cercopithecus aethiops" FT /isolate="TAN98" FT /mitochondrion FT /sub_species="tantalus" FT /sequenced_mol="DNA" FT /tissue_type="plasma" XX SQ Sequence 391 BP; 129 A; 105 C; 74 G; 83 T; 0 other; BASE COUNT 129 a 105 c 74 g 83 t 4822 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~- -~~~~)~~~~ 1261 ~~~~~~~~~~ ---------- ---~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCUU-AGC- CCUAAA-CCU 2521 C--AGUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aac(caac)a a---A-ACUA 2701 C-U|--C|GC C-AGAA-UAC UACAAGC(-- -AACC--)GC UUG--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-CC CCCCUAGA|G GAGCCUGU-C |CCAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC C-ACCCCACC CUCUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CG AAC-|CCU(G A-UAA)AGG- -----(uua- 3181 aca)------ A-AGUGAGCG CAA-GUGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cc--- 3781 -cuucc---G CAAAAA-CGU U-AGGUCAAG G|UGUA|GCU UAU------- ---------G 3841 A-G-AU-GG- AA-AAA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u cc---)---- ---------- ---------- UAG-AAaac- 4021 ---------c c-----ACGA --UAACU-CU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-G--AG -U--CUAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- AUAGA-GU-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CGA--GGCC 4261 AUAAAG-CA- CGC~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.aet.3 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Cholorcebus aethiops. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Cholorcebus aethiops. ORGANISM Mitochondrion Cholorcebus aethiops. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L35187 ID MICARGZC standard; DNA; ORG; 389 BP. XX AC L35187; XX DT 25-NOV-1994 (Rel. 41, Created) DT 25-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE Mitochondrion Cercopithecus aethiops (isolate CAE9307) 12S DE ribosomal RNA (12S rRNA) gene. XX KW 12S ribosomal RNA. XX OS Cercopithecus aethiops (african green monkey) OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; OC Theria; Eutheria; Primates; Haplorhini; Catarrhini; OC Cercopithecidae; Cercopithecinae. XX OG Mitochondrion XX RN [1] RP 1-389 RA Der Kuyl A.C., Kuiken C.L., Dekker J.T., Goudsmit J.; RT "Phylogeny of African monkeys based upon mitochondrial 12S rRNA RT sequences"; RL Unpublished. XX CC NCBI gi: 521155 XX FH Key Location/Qualifiers FH FT rRNA 1..389 FT /product="12S ribosomal RNA" FT /gene="12S rRNA" FT source 1..389 FT /organism="Cercopithecus aethiops" FT /isolate="CAE9307" FT /mitochondrion FT /sub_species="sabaeus" FT /sequenced_mol="DNA" FT /tissue_type="plasma" XX SQ Sequence 389 BP; 130 A; 106 C; 71 G; 82 T; 0 other; BASE COUNT 130 a 106 c 71 g 82 t 4824 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~- -~~~~)~~~~ 1261 ~~~~~~~~~~ ---------- ---~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCUU-AGC- CCUAAA-CCU 2521 C--AGUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aac(caac)a a---A-ACUA 2701 C-U|--C|GC C-AGAA-UAC UACAAGC(-- -AACC--)GC UUG--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCA---CC CCCCUAGA|G GAGCCUGU-C |CCAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC C-ACCCUACC CUCUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G A-UAA)AGG- -----(uca- 3181 ca-)------ A-AGUGAGCG CAA-GUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cc--- 3781 cuuuuc---G CAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-G-AC-GG- AA-AAA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u cc---)---- ---------- ---------- UAG-AAaac- 4021 ---------c c-----ACGA --UAACU-CU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-G--AG -U--CCAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- AUAGA-GU-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAA--GGCC 4261 AUAAAG-CA- CGC~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.aet.4 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Chlorocebus aethiops. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Chlorocebus aethiops. ORGANISM Mitochondrion Chlorocebus aethiops. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L35185 ID MICARGZB standard; DNA; ORG; 392 BP. XX AC L35185; XX DT 25-NOV-1994 (Rel. 41, Created) DT 25-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE Mitochondrion Cercopithecus aethiops (isolate RIVM01) 12S ribosomal DE RNA (12S rRNA) gene. XX KW 12S ribosomal RNA. XX OS Cercopithecus aethiops (african green monkey) OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; OC Theria; Eutheria; Primates; Haplorhini; Catarrhini; OC Cercopithecidae; Cercopithecinae. XX OG Mitochondrion XX RN [1] RP 1-392 RA Der Kuyl A.C., Kuiken C.L., Dekker J.T., Goudsmit J.; RT "Phylogeny of African monkeys based upon mitochondrial 12S rRNA RT sequences"; RL Unpublished. XX CC NCBI gi: 521154 XX FH Key Location/Qualifiers FH FT rRNA 1..392 FT /product="12S ribosomal RNA" FT /gene="12S rRNA" FT source 1..392 FT /organism="Cercopithecus aethiops" FT /isolate="RIVM01" FT /mitochondrion FT /sub_species="aethiops" FT /sequenced_mol="DNA" FT /tissue_type="plasma" XX SQ Sequence 392 BP; 130 A; 104 C; 74 G; 84 T; 0 other; BASE COUNT 130 a 104 c 74 g 84 t 4821 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~- -~~~~)~~~~ 1261 ~~~~~~~~~~ ---------- ---~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCUU-AGC- CCUAAA-CCU 2521 C--AGUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aac(caac)a a---A-ACUA 2701 C-U|--C|GC C-AGAA-UAC UACAAGC(-- -AACC--)GG UUG--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-CC CCCCUAGA|G GAGCCUGU-C |CCAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC C-ACCCCACC CUCUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CG AAC-|CCU(G A-UAA)AGG- -----(uca- 3181 aca)------ A-AGUGAGCG UAA-AUGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cc--- 3781 cuuucc---G CAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-G-AU-GG- AA-AAA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u cc---)---- ---------- ---------- UAG-AAaac- 4021 ---------c c-----ACGA --UAACU-CU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-G--AG -U--CUAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- AUAGA-GU-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CGA--GGCC 4261 AUAAAG-CA- CGC~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.sylva 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Macaca sylvanus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Macaca sylvanus. ORGANISM Mitochondrion Macaca sylvanus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L35188 LOCUS MACMTRGZA 389 bp DNA PRI 11-MAY-1995 DEFINITION Macaca sylvanus (isolate MSM1) mitochondrial 12S ribosomal RNA (12S rRNA) gene. ACCESSION L35188 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Macaca sylvanus (individual_isolate MSM1) male plasma DNA. ORGANISM Mitochondrion Macaca sylvanus Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papionini. REFERENCE 1 (bases 1 to 389) AUTHORS van der Kuyl,A.C., Kuiken,C.L., Dekker,J.T. and Goudsmit,J. TITLE Phylogeny of African monkeys based upon mitochondrial 12S rRNA sequences JOURNAL J. Mol. Evol. (1994) In press COMMENT NCBI gi: 522295 FEATURES Location/Qualifiers source 1..389 /organism="Mitochondrion Macaca sylvanus" /isolate="MSM1" /mitochondrion /sequenced_mol="DNA" /sex="male" /tissue_type="plasma" rRNA 1..389 /gene="12S rRNA" /product="12S ribosomal RNA" BASE COUNT 129 a 108 c 74 g 78 t ORIGIN BASE COUNT 129 a 108 c 74 g 78 t 4824 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~- -~~~~)~~~~ 1261 ~~~~~~~~~~ ---------- ---~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCCU-AGC- CCUAAA-CCU 2521 C--AGUA-GU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- gag(caac)a a---A-ACUA 2701 C-U|--C|GC C-AGAA-UAC UACAAGC(-- -AACA--)GC UUG--AAACU CAAAGGAC-U 2761 UG|ACGGUG- CUUUACA--C CCCCUAGA|G GAGCCUGU-U |CCAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC C-ACCCUACC CUCUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G A-UGA)AGG- -----(cca- 3181 ca-)------ A-AGUGAGCG CAA-AUGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cca-- 3781 cacc-----G CAAAAA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-AC-GG- UA-AAA--AA -UGGGCUACA UU--UUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c cu---)---- ---------- ---------- CAG-AAuacc 4021 ---------c c-----ACGA --AAACU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-G--AG -U--CCAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- AUAGA-GU-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCA--GGCC 4261 AUAAAG-CG- CGC~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.sphin 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Mandrillus sphinx. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Mandrillus sphinx. ORGANISM Mitochondrion Mandrillus sphinx. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L35196 LOCUS MNDMTRGZA 391 bp DNA PRI 11-MAY-1995 DEFINITION Mandrillus sphinx (isolate MD7) mitochondrial 12S ribosomal RNA (12S rRNA) gene. ACCESSION L35196 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Mandrillus sphinx (individual_isolate MD7) plasma DNA. ORGANISM Mitochondrion Mandrillus sphinx Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papionini. REFERENCE 1 (bases 1 to 391) AUTHORS van der Kuyl,A.C., Kuiken,C.L., Dekker,J.T. and Goudsmit,J. TITLE Phylogeny of African monkeys based upon mitochondrial 12S rRNA sequences JOURNAL J. Mol. Evol. (1994) In press COMMENT NCBI gi: 522303 FEATURES Location/Qualifiers source 1..391 /organism="Mitochondrion Mandrillus sphinx" /isolate="MD7" /mitochondrion /sequenced_mol="DNA" /tissue_type="plasma" rRNA 1..391 /gene="12S rRNA" /product="12S ribosomal RNA" BASE COUNT 128 a 101 c 73 g 89 t ORIGIN BASE COUNT 128 a 101 c 73 g 89 t 4822 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~- -~~~~)~~~~ 1261 ~~~~~~~~~~ ---------- ---~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCUU-AGC- CUUAAA-CCU 2521 C--AAUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aa-(caac)a a---A-ACUA 2701 C-U|--C|GC C-AGAA-UAC UACAAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUAuUC CCCCUAGA|G GAGCCUGU-U |UCAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC C-ACCCUACC CUCUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G A-UGA)AGG- -----(cua- 3181 ca-)------ A-AGUGAGCG CAA-AUGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cc--- 3781 ccgcc----G CAAAAA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-AC-GG- UA-AAA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c cu---)---- ---------- ---------- CAG-AAaac- 4021 ---------c cu----ACGA --UAUCU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-c-) U-AA-G--AG -C--CCAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- AUAGA-GU-- --)GCUUGAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUA--GGCC 4261 AUGAAG-CG- CGU~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.cynoc 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Papio cynocephalus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Papio cynocephalus. ORGANISM Mitochondrion Papio cynocephalus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L35184 LOCUS BABMTRGZB 390 bp DNA PRI 11-MAY-1995 DEFINITION Papio cynocephalus (isolate PC302) mitochondrial 12S ribosomal RNA (12S rRNA) gene. ACCESSION L35184 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Papio cynocephalus (individual_isolate PC302) plasma DNA. ORGANISM Mitochondrion Papio hamadryas cynocephalus Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papionini. REFERENCE 1 (bases 1 to 390) AUTHORS van der Kuyl,A.C., Kuiken,C.L., Dekker,J.T. and Goudsmit,J. TITLE Phylogeny of African monkeys based upon mitochondrial 12S rRNA sequences JOURNAL J. Mol. Evol. (1994) In press COMMENT NCBI gi: 521169 FEATURES Location/Qualifiers source 1..390 /organism="Mitochondrion Papio cynocephalus" /isolate="PC302" /mitochondrion /sequenced_mol="DNA" /tissue_type="plasma" rRNA 1..390 /gene="12S rRNA" /product="12S ribosomal RNA" BASE COUNT 128 a 100 c 73 g 89 t ORIGIN BASE COUNT 128 a 100 c 73 g 89 t 4823 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~- -~~~~)~~~~ 1261 ~~~~~~~~~~ ---------- ---~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCUU-GGC- CCUAAA-CCU 2521 C--AAUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(uaac)a a---A-ACUA 2701 U-U|--C|GC C-AGAA-UAC UACAAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAUA--C CCCCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC C-ACCCCACC CUCUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---U---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G A-UGA)AGG- -----(cua- 3181 cg-)------ A-AGUGAGCG CAA-AUGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cc--- 3781 uccccc---G CAAAAA-CGU U-AGGUCAAG G|UGUA|ACU UAU------- ---------G 3841 A-G-AC-GG- UA-A-A--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c uu---)---- ---------- ---------- CAG-AAaac- 4021 ---------c cc----ACGA --UAGCU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-c-) U-AG-G--AG -C--CCAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- AUAGA-GU-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUA--GGCC 4261 AUAAAG-CA- CGC~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.hamad 5213 bp RNA RNA 21-DEC-1998 DEFINITION Mitochondrion Papio hamadryas.; 12S rRNA; 16S rRNA; ATPase subunit 6; ATPase subunit 8; control region; cytochrome b; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; cytochrome oxidase I; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; origin of replication; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. ACCESSION Y18001 KEYWORDS 12S rRNA; 16S rRNA; ATPase subunit 6; ATPase subunit 8; control region; cytochrome b; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; cytochrome oxidase I; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; origin of replication; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Mitochondrion Papio hamadryas. ORGANISM Mitochondrion Papio hamadryas. REFERENCE 1 (bases 1 to 16521) AUTHORS Arnason,U., Gullberg,A. and Janke,A. TITLE nonprimate calibration points Molecular timing of primate divergences as estimated by two JOURNAL J. Mol. Evol. 47 (6), 718-727 (1998) STANDARD No information REFERENCE 2 (bases 1 to 16521) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (27-AUG-1998) U. Arnason, Dept of Genetics, Division of Evolutionary Molecular Systematics, University of Lund, Solvegatan 29, S-223 62 LUND, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y18001 Users are requested to refer to the citation of this entry as well as the accession number in their publications. BASE COUNT 311 a 247 c 178 g 211 t 4266 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aauAGGCU 661 (UGG-)U-CC U|GGCCU-UU CUA-UUGACU -C-UUAG-CA |AG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCAUUCCGGU GAAGa---CG C|CCU-Uccc --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-aacau- -----)---- 1261 ---------- ---------- ---g--acc- a-gAAGGAGC |--------- aAGUAUCA-- 1321 -AGCACGC-- -----(CCAU ---------- ---------- ---------- ------)--- 1381 ---GC|---A GCUCA--AAA C|ACUUU-GC --|------- (-cca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AC AAACCUUUAG C-AAUGAAC( ---------- ----GAAA)G UUUAA-CUA| 1561 A|-GCUA-U- GC-UAU--gc c-a------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -CAA-C---U UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAUU|--- -AAC-CCC-- 1981 AGCCA-AUAG A--------a acCGGC|GUA GAGGGUGUUU --uaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- -------uc- 2281 --------ua gu------cc aauaaa--gc -----|UAAA CCCCAU-CUA ----AACU(G 2341 UAAAA)CCCU ---------A GCUA-ACGUA AAA------- -----uaaac -uAC(-GAAG 2401 -)GU|g---- ----gcuuua uaauu----- ---------- ccu-gaacAC ACAAU-AGCC 2461 A-AGA---CC CAAACUGGG( AUUAGACAC) CCCA-CUAU| -CGUU-GGC- CCUAAA-CCU 2521 C--AAUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(uaac)a a---A-ACUA 2701 U-U|--C|GC C-AGAA-UAC UACAAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAUA--C CCCCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC C-ACCCCACC CUCUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---U---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G A-UGA)AGG- -----(cua- 3181 cg-)------ A-AGUGAGCG CAA-AUGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cc--- 3781 uccccc---G CAAAAA-CGU U-AGGUCAAG G|UGUA|ACU UAU------- ---------G 3841 A-G-AC-GG- UA-A-A--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c uu---)---- ---------- ---------- CAG-AAaac- 4021 ---------c cc----ACGA --UAGCU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-c-) U-AG-G--AG -C--CCAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- AUAGA-GU-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUA--GGCC 4261 AUAAAG-CA- CGCACACA-C -CGCCCGUCA C-UCC--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaua--u- 4381 auu---ua-- agg---aaua acuua-acu- -aaa-ugc-- ccu-a-acau uuauaua--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-GGA-U AAGUCGUAAC ACGGUAAG-U GUA-CU(GGA 4621 -A)GGU-GC- ACUUGGAUAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.guere 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Colobus guereza. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Colobus guereza. ORGANISM Mitochondrion Colobus guereza. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L35195 ID MICGRGZA standard; DNA; ORG; 386 BP. XX AC L35195; XX DT 25-NOV-1994 (Rel. 41, Created) DT 25-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE Mitochondrion Colobus guereza (isolate GUER 2) 12S ribosomal RNA DE (12S rRNA) gene. XX KW 12S ribosomal RNA. XX OS Colobus guereza OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; OC Theria; Eutheria; Primates; Haplorhini; Catarrhini; Colobinae. XX OG Mitochondrion XX RN [1] RP 1-386 RA Der Kuyl A.C., Kuiken C.L., Dekker J.T., Goudsmit J.; RT "Phylogeny of African monkeys based upon mitochondrial 12S rRNA RT sequences"; RL Unpublished. XX CC NCBI gi: 521178 XX FH Key Location/Qualifiers FH FT rRNA 1..386 FT /product="12S ribosomal RNA" FT /gene="12S rRNA" FT source 1..386 FT /organism="Colobus guereza" FT /isolate="GUER 2" FT /mitochondrion FT /sequenced_mol="DNA" FT /tissue_type="plasma" XX SQ Sequence 386 BP; 135 A; 96 C; 69 G; 86 T; 0 other; BASE COUNT 135 a 96 c 69 g 86 t 4827 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~- -~~~~)~~~~ 1261 ~~~~~~~~~~ ---------- ---~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCCU-AGC- CCUAAA-CUU 2521 U--AAUA-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(uaac)a a---A-ACUA 2701 C-U|--C|GC C-AGAA-CAC UACAAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-CC CCCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC C-ACCCUACC AUCUCUCGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|C-U(C A-ACA)AGA- -----(gac- 3181 cca)------ A-AGUAAGCA CAA-ACGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----ccac- 3781 ---------G CAAAAA-CGU U-AGGUCAAG G|UGUA|GCU UAU------- ---------G 3841 A-G-AU-GG- -g-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ac---)---- ---------- ---------- CAG-AAaau- 4021 ---------c cc----ACGA --UAGCU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-AG-G--AG -C--CUAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- AUAGA-GU-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCC 4261 AUGAAG-CA- UGC~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.N.larva 5213 bp RNA RNA 09-JUL-1998 DEFINITION Mitochondrion Nasalis larvatus.; . ACCESSION AF0699 0 KEYWORDS . SOURCE Mitochondrion Nasalis larvatus. ORGANISM Mitochondrion Nasalis larvatus. REFERENCE 1 (bases 1 to 919) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE and Morphological Data Platyrrhine Systematics: A Simultaneous Analysis of Molecular JOURNAL Am. J. Phys. Anthropol. 106, 261-281 (1998) STANDARD No information REFERENCE 2 (bases 1 to 919) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Direct Submission JOURNAL Submitted (04-JUN-1998) Vertebrate Paleontology, American Museum of Natural History, Central Park West at 79th St., New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF069970 BASE COUNT 324 a 229 c 162 g 204 t 4294 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~ACU -C-GUAG-CA |AG-AU--UA -CAC-C-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCACUCCGGU GAAAGA--CA C|CCU-Acaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-aucau- -----)---- 1261 ---------- ---------- ---g--auu- g-aAAGGAGU |--------- aAGUAUCA-- 1321 -AGCAUGCC- -----(-cga ---------- ---------- ---------- ------)--- 1381 --CGC|---A GCUCA--AGA C|ACUUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AC UAAUAUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUAA-CUA| 1561 A|-GCUA-U- GC-UAU--ua ua-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -GAC-CCA-- 1981 AGCUA-AUAG G--------c acUGGC|GUA AAGAGUGUUU --uaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------ua aacccaaccc aauaaa--gc -----|UAAA cuCUAC-CUA ----AACU(G 2341 UAAAA)--UC CU-------A GCCA-AuguA AAA------- -----uaaac -uAC(-AAAA 2401 -)GU|g---- ----gcuuua aaaau----- ---------- ucu-gaauAC ACAAU-AGCU 2461 A-AGA---CU CAAACUGGG( AUUAGACAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 C--AAUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- gaa(uaac)a a---A-ACUA 2701 C-U|--C|GC C-AGAA-CAC UGCAAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCAGUG- CUUCACA-UC CCCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAAUC 2821 C--------- ----)CGAUC C-ACCCCACC AUCUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|-CU(C A-ACA)AGA- -----(gac- 3181 gca)------ A-AGUAAGCG CAA-ACGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----ccac- 3781 ---------G CAAAAA-CGU U-AGGUCAAG G|UGUA|GCU UAU------- ---------G 3841 A-G-AU-GG- AA-AAA--AA -UGGGCUACA UU--UUCCA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c cc---)---- ---------- ---------- CAG-AAaacc 4021 cc-------- ------ACGA --UAACU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAC-C-) U-AA-G--AG -C--CCAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- AUAGA-CU-- --)GCUUAAU U-GAC----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCC 4261 AUGAAG-CA- UGCACACA-C -CGCCUGUCG C-UCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaua--u- 4381 auu---u--a agg-----a- --uua-acu- uaac-acc-- ccaa-c--au uuauaua--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUUGUAAC AUGGUAAG-U GUAuCU(GGA 4621 -A)GGU-GC- ACUUGGAUAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (21)-Homin 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.G.gor.1 5213 bp RNA RNA 07-MAY-1996 DEFINITION Mitochondrion Gorilla gorilla.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; COI gene; COII gene; COIII gene; control region; cytb gene; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; origin of replication; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. ACCESSION X93347 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; COI gene; COII gene; COIII gene; control region; cytb gene; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; origin of replication; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. SOURCE Mitochondrion Gorilla gorilla. ORGANISM Mitochondrion Gorilla gorilla. REFERENCE 1 (bases 1 to 16412) AUTHORS Xu,X. and Arnason,U. TITLE lowland gorilla A complete sequence of the mitochondrial genome of the Western JOURNAL Mol. Biol. Evol. 13, 691-698 (1995) STANDARD No information REFERENCE 2 (bases 1 to 16412) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (16-NOV-1995) U. Arnason, Dept of Genetics, Division Evolutionary Molec. Systematics, University of Lund, Solvegatan 29, S-223 62 LUND, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X93347 BASE COUNT 320 a 246 c 180 g 204 t 4263 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aauAGGUU 661 (UGG-)U-CC U|AGCCU-UU CUA-UUAACU -C-UUAG-UA |GG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCGCCCCAGU GAGU----CA C|CCU-Cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-accac- -----)---- 1261 ---------- ---------- ---g--auc- a-aAAGGAAC |--------- aAGCAUCA-- 1321 -AGUACGCA- -----(GAAA ---------- ---------- ---------- ------)--- 1381 --UGC|---A GCUCA--AAA C|GCUUA-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-cCCC--( CACG-)--GG Aga----C-A 1501 GCA|GUG-AU AAACCUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUAA-CUA| 1561 A|-GCCA-U- AC-UAAcccc a--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-C ACGAUU|--- -AAC-CCA-- 1981 AGCCA-AUAG A--------a auCGGC|GUA AAGAGUGUUU --uaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------uca- ---auccccc aauaaa--gc -----|UAAA auUCAC-CUG ----AGUU(G 2341 UAAAA)AACU CC-------A GCUG-AuauA AAA------- -----uaaac -uAC(-GAAA 2401 -)GU|g---- ----gcuuua auaua----- ---------- ucu-gaacAC ACAAU-AGCU 2461 A-GGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-CUU 2521 C--AACA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(uaac)a a---G-ACUG 2701 C-U|--C|GC C-AGAA-CAC UACGAGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-C 2761 UG|GCGGUG- CUUCACA-UC CUUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC ACCUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G A-CGA)AGG- -----(cca- 3181 ca-)------ A-AGUAAGCA CAA-GUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----ccac- 3781 ---------G UAAAGA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-GU-GG- CA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c uu---)---- ---------- ---------- CAG-AAaacu 4021 ---------- ------ACGA --UAACC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-G--GG -U--AGAAG- -GUGGAUUUA 4141 G-C--AGUAA A-CUAAGA(- GUAGA-GU-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAG--GGCC 4261 CUGAAG-CG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua--u- 4381 acu---ucaa agg-----ac auuuaacu-- aaaa-cc--- ccu-acgcau cuauaua--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGACGA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.gor.2 5213 bp RNA RNA 19-JAN-1986 DEFINITION Mitochondrion Gorilla gorilla. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Gorilla gorilla. ORGANISM Mitochondrion Gorilla gorilla. REFERENCE 1 (bases 1 to 16412) AUTHORS No information JOURNAL 1(1986) STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5213) Corresponding GenBank entry: D38114 Phylo:Mitochondria,Animal,Mammal,Gorilla same as D38114 BASE COUNT 319 a 244 c 180 g 206 t 4264 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aauAGGUU 661 (UGG-)U-CC U|AGCCU-UU CUA-UUAACU -C-UUAG-UA |GG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCGCCCCAGU GAAU----CA C|CCU-Cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-accac- -----)---- 1261 ---------- ---------- ---g--auc- a-aAAGGAAC |--------- aAGCAUCA-- 1321 -AGUACGCA- -----(GAAA ---------- ---------- ---------- ------)--- 1381 --UGC|---A GCUCA--AAA C|GCUUA-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG GGa----C-A 1501 GCA|GUG-AU UAACCUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUAA-CUA| 1561 A|-GCCA-U- AC-UAAcccc a--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-C ACGAUU|--- -AAC-CCA-- 1981 AGCCA-AUAG A--------a auCGGC|GUA AAGAGUGUUU --uaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------uca- ----aucccc aauaaa--gc -----|UAAA auUCAC-CUG ----AGUU(G 2341 UAAAA)AACU CC-------A GCUG-AuauA AAA------- -----uaaac -uAC(-GAAA 2401 -)GU|g---- ----gcuuua auaua----- ---------- ucu-gaacAC ACAAU-AGCU 2461 A-GGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-CUU 2521 C--AACA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(uaac)a a---G-ACUG 2701 C-U|--C|GC C-AGAA-CAC UACGAGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-C 2761 UG|GCGGUG- CUUCAUA-UC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC ACCUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G A-UGA)AGG- -----(cca- 3181 ca-)------ A-AGUAAGCA CAA-GUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----ccac- 3781 ---------G UAAAGA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-GU-GG- CA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c uu---)---- ---------- ---------- CAG-AAaacu 4021 ---------- ------ACGA --UAACC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-G--GG -U--AGAAG- -GUGGAUUUA 4141 G-C--AGUAA A-CUAAGA(- GUAGA-GU-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAG--GGCC 4261 CUGAAG-CG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua--u- 4381 acu---ucaa agg-----ac auuuaacu-- aaaa-cc--- ccu-acgcau cuauaua--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGACGA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.gor.3 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Gorilla gorilla. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Gorilla gorilla. ORGANISM Mitochondrion Gorilla gorilla. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L35209 ID MIGGRGZA standard; DNA; ORG; 386 BP. XX AC L35209; XX DT 25-NOV-1994 (Rel. 41, Created) DT 25-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE Mitochondrion Gorilla gorilla (isolate Banja) 12S ribosomal RNA DE (12S rRNA) gene. XX KW 12S ribosomal RNA. XX OS Gorilla gorilla (gorilla) OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; OC Theria; Eutheria; Primates; Haplorhini; Catarrhini; Pongidae. XX OG Mitochondrion XX RN [1] RP 1-386 RA Der Kuyl A.C., Kuiken C.L., Dekker J.T., Goudsmit J.; RT "Phylogeny of African monkeys based upon mitochondrial 12S rRNA RT sequences"; RL Unpublished. XX CC NCBI gi: 521198 XX FH Key Location/Qualifiers FH FT rRNA 1..386 FT /product="12S ribosomal RNA" FT /gene="12S rRNA" FT source 1..386 FT /organism="Gorilla gorilla" FT /isolate="Banja" FT /mitochondrion FT /sequenced_mol="DNA" FT /sex="female" FT /tissue_type="plasma" XX SQ Sequence 386 BP; 123 A; 100 C; 81 G; 82 T; 0 other; BASE COUNT 123 a 100 c 81 g 82 t 4827 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~- -~~~~)~~~~ 1261 ~~~~~~~~~~ ---------- ---~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCCU-AGC- CCUAAA-CUU 2521 C--AACA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(uaac)a a---G-ACUG 2701 C-U|--C|GC C-AGAA-CAC UACGAGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-C 2761 UG|GCGGUG- CUUCACA-UC CUUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC ACCUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G A-CGA)AGG- -----(cca- 3181 ca-)------ A-AGUAAGCA CAA-GUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----ccac- 3781 ---------G UAAAGA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-GU-GG- CA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c uu---)---- ---------- ---------- CAG-AAaac- 4021 ---------u ------ACGA --UAACC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-G--GG -U--AGAAG- -GUGGAUUUA 4141 G-C--AGUAA A-CUAAGA(- GUAGA-GU-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAG--GGCC 4261 CUGAAG-CG- CGU~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.H.sap.1 5213 bp RNA RNA 22-JAN-1980 DEFINITION Mitochondrion Homo sapiens. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Homo sapiens. ORGANISM Mitochondrion Homo sapiens. REFERENCE 1 (bases 1 to 16412) AUTHORS No information JOURNAL 460-467(1980) STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5213) Corresponding GenBank entry: V00710 Phylo:Mitochondria,Animal,Mammal,Homo BASE COUNT 315 a 253 c 181 g 205 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aauAGGUU 661 (UGG-)U-CC U|AGCCU-UU CUA-UUAGCU -C-UUAG-UA |AG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCGUUCCAGU GAGUU---CA C|CCU-Cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-accac- -----)---- 1261 ---------- ---------- ---g--auc- a-aAAGGAAC |--------- aAGCAUCA-- 1321 -AGCACGCA- -----(GCAA ---------- ---------- ---------- ------)--- 1381 --UGC|---A GCUCA--AAA C|GCUUA-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAa----C-A 1501 GCA|GUG-AU UAACCUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUAA-CUA| 1561 A|-GCUA-U- AC-UAA--cc cca------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-C ACGAUU|--- -AAC-CCA-- 1981 AGUCA-AUAG A--------a ccCGGC|GUA AAGAGUGUUU --uaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------ucac -ccccucccc aauaaa--gc -----|UAAA acUCAC-CUG ----AGUU(G 2341 UAAAA)AACU CC-------A GUUG-AcacA AAA------- -----uagac -uAC(-GAAA 2401 -)GU|g---- ----gcuuua acaua----- ---------- ucu-gaacAC AGAAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 C--AACA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(caac)a a---A-ACUG 2701 C-U|--C|GC C-AGAA-CAC UACGAGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-C 2761 UG|GCGGUG- CUUCAUA-UC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC ACCUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G A-UGA)AGG- -----(cua- 3181 ca-)------ A-AGUAAGCG CAA-GUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----ccac- 3781 ---------G UAAAGA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-GU-GG- CA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c cc---)---- ---------- ---------- CAG-AAaacu 4021 ---------- ------ACGA --UAGCC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-u-) U-AA-G--GG -U--CGAAG- -GUGGAUUUA 4141 G-C--AGUAA A-CUAAGA(- GUAGA-GU-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAG--GGCC 4261 CUGAAG-CG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua--u- 4381 acu---ucaa agg-----ac auuua-acu- aaaa-cc--- ccu-acgcau uuauaua--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGACGA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.H.sap.2 5213 bp RNA RNA 11-JAN-191 DEFINITION Homo sapiens. ACCESSION No information KEYWORDS No information. SOURCE Homo sapiens. ORGANISM Homo sapiens. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: D38112 LOCUS HUMMTA 16559 bp ds-DNA ORG 08-FEB-1995 DEFINITION Mitochondrion Homo sapiens gene. ACCESSION D38112 KEYWORDS 12srRNA; 16srRNA; ATPase subunit 6; ATPase subunit 8; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; cytochrome b; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Mitochondrion Homo sapiens (strain African, individual_isolate SB17) placenta DNA. ORGANISM Mitochondrion Homo sapiens Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Hominidae. REFERENCE 1 (sites) AUTHORS Horai,S., Hayasaka,K., Kondo,R., Tsugane,K. and Takahata,N. TITLE Recent African origin of modern humans revealed by complete sequences of hominoid mitochondrial DNAs JOURNAL Proc Natl Acad Sci U S A 92, 532-536 (1994) REFERENCE 2 (bases 1 to 16559) AUTHORS Horai,S. and Hayasaka,K. JOURNAL Unpublished (1995) COMMENT Submitted (02-Sep-1994) to DDBJ by: Kenji Hayasaka Depertment of Human Genetics National Institute of Genetics 1111 Yata, Mishimashi Shizuoka 411 Japan Phone: 0559-75-0771 x568 Email: khayasak@ddbj.nig.ac.jp Fax: 0559-75-6040. NCBI gi: 644480 FEATURES Location/Qualifiers source 1..16559 /organism="Mitochondrion Homo sapiens" /mitochondrion /sequenced_mol="DNA" /tissue_type="placenta" tRNA 1..71 /product="tRNA-Phe" rRNA 72..1025 /product="12srRNA" tRNA 1026..1094 /product="tRNA-Val" rRNA 1095..2652 /product="16srRNA" tRNA 2653..2727 /product="tRNA-Leu(UUR)" mat_peptide 2730..3683 /codon=(seq:'ata', aa:Met) /codon=(seq:'tga', aa:Trp) /codon_start=1 /product="NADH dehydrogenase subunit 1" tRNA 3686..3754 /product="tRNA-Ile" tRNA complement(3752..3823) /product="tRNA-Gln" tRNA 3825..3892 /product="tRNA-Met" mat_peptide 3893..4933 /codon_start=1 /product="NADH dehydrogenase subunit 2" tRNA 4935..5002 /product="tRNA-Trp" tRNA complement(5010..5078) /product="tRNA-Ala" tRNA complement(5080..5152) /product="tRNA-Asn" tRNA complement(5184..5249) /product="tRNA-Cys" tRNA complement(5249..5314) /product="tRNA-Tyr" mat_peptide 5327..6865 /codon_start=1 /product="Cytochrome C oxidase subunit 1" tRNA complement(6868..6939) /product="tRNA-Ser(UCN)" tRNA 6941..7008 /product="tRNA-Asp" CDS 7009..7692 /note="NCBI gi: 644481" /codon_start=1 /product="Cytochrome C oxidase subunit 2" /translation="MAHAAQVGLQDATSPIIEELITFHDHALIIIFLICFLVLYALFL TLTTKLTNTNISDAQEIETVWTILPAIILVLIALPSLRILYITDEVNDPSLTIKSIGH QWYWTYEYTDYGGLIFNSYILPPLFLEPGDLRLLDVDNRVVLPIEAPIRIIITSQDVL HSWAVPTLGLKTDAIPGRLNQTTFTATRPGVYYGQCSEICGANHSFMPIVLELIPLKI FEIGPVFTL" tRNA 7709..7778 /product="tRNA-Lys" CDS 7780..7986 /note="NCBI gi: 644482" /codon_start=1 /product="ATPase subunit 8" /translation="MPQLNTTVWPTIITPILLTLFLITQLKILNTSYHLPPSPKPIKI KNYNKPWEPKWTKICSLHSLPPQS" mat_peptide 7941..8618 /codon_start=1 /product="ATPase subunit 6" mat_peptide 8621..9403 /codon_start=1 /product="Cytochrome C oxidase subunit 3" tRNA 9405..9472 /product="tRNA-Gly" mat_peptide 9473..9817 /codon_start=1 /product="NADH dehydrogenase subunit 3" tRNA 9819..9883 /product="tRNA-Arg" CDS 9884..10180 /note="NCBI gi: 644483" /codon_start=1 /product="NADH dehydrogenase subunit 4L" /translation="MPLIYINIILAFTISLLGILVYRSHLISSLLCLEGIILSLFIIA TLITLNTHSLLANIVPIAILVFAACEAAVGLALLVSISNTYGLDYVHNLNLLQC" mat_peptide 10174..11550 /codon_start=1 /product="NADH dehydrogenase subunit 4" tRNA 11552..11620 /product="tRNA-His" tRNA 11621..11679 /product="tRNA-Ser(AGY)" tRNA 11680..11750 /product="tRNA-Leu(CUN)" CDS 11751..13562 /note="NCBI gi: 644484" /codon_start=1 /product="NADH dehydrogenase subunit 5" /translation="MTMHTTITTLTLTSLIPPILTTLVNPNKKNSYPHYVKSIVASTF IISLFPTTIFMCLDQEVIISNWHWATTQTTQLSLSFKLDYFSIIFIPVALFVTWSIIE FSLWYINSDPNINQFFKYLLIFLITMLILVTANNLFQLFIGWEGVGIISFLLISWWYA RADANTAAIQAILYNRIGDIGFILALAWFILHSNSWDPQQIALLNANPSLPPLLGLLL AAAGKSAQLGLHPWLPSAIEGPTPVSALLHSSTIVVAGVFLLIRFHPLAENSPLIQTL TLCLGAITTLFAAVCALTQNDIKKIVAFSTSSQLGLIVVTIGINQPHLAFLHICTHAF FKAILFMCSGSIIHNLNNEQDIRKIGGLLKTIPLTSTSLTIGSLALAGIPFLTGFYSK DHIIETANISYTNAWALSITLIATSLTSAYSTRIILLTLTGQPRFPTLTNINENNPTL LNPIKRLAAGSLFAGFLITNNISPASPFQTTIPLYLKLTALAVTFLGLLTALDLNYLT NKLKIKSPLCTFYFSNILGFYPSITHRTIPYLGLLTSQNLPLLLLDLTWLEKLLPKTI SQHQISTSIITSTQKGIIKLYFLSFFFPLILTLLLIT" CDS complement(13563..14087) /note="NCBI gi: 644485" /codon_start=1 /product="NADH dehydrogenase subunit 6" /translation="MMYALFLLSVGLVMGFVGFSSKPSPIYGGLVLIVSGVVGCVIIL NFGGGYMGLIVFLIYLGGMMVVFGYTTAMAIEEYPEAWGSGVEVLVSVLVGLAMEVGL VLWVKEYDGVVVVVNFNSVGSWIIYEGEGSGLIREDPIGAGALYDYGRWLVVVTGWTL FVGVYIVIEIARGN" tRNA complement(14088..14156) /product="tRNA-Glu" mat_peptide 14161..15300 /codon_start=1 /product="Cytochrome b" tRNA 15302..15367 /product="tRNA-Thr" tRNA complement(15370..15437) /product="tRNA-Pro" D-loop 15438..16559 BASE COUNT 5117 a 5169 c 2177 g 4096 t ORIGIN BASE COUNT 316 a 252 c 181 g 205 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aauAGGUU 661 (UGG-)U-CC U|AGCCU-UU CUA-UUAGCU -C-UUAG-UA |AG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCGUUCCAGU GAGUU---CA C|CCU-Cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-accac- -----)---- 1261 ---------- ---------- ---g--auc- a-aAAGGGAC |--------- aAGCAUCA-- 1321 -AGCACGCA- -----(ACAA ---------- ---------- ---------- ------)--- 1381 --UGC|---A GCUCA--AAA C|GCUUA-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAa----C-A 1501 GCA|GUG-AU aAACCUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUAA-CUA| 1561 A|-GCUA-U- AC-UAA--cc cca------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-C ACGAUU|--- -AAC-CCA-- 1981 AGUCA-AUAG A--------a gcCGGC|GUA AAGAGUGUUU --uaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------ucac -ccccucccc aauaaa--gc -----|UAAA acUCAC-CUG ----AGUU(G 2341 UAAAA)AACU CC-------A GUUG-AcacA AAA------- -----uaaac -uAC(-GAAA 2401 -)GU|g---- ----gcuuua acaua----- ---------- ucu-gaauAC ACAAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 C--AACA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(caac)a a---A-ACUG 2701 C-U|--C|GC C-AGAA-CAC UACGAGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-C 2761 UG|GCGGUG- CUUCAUA-UC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC ACCUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G A-UGA)AGG- -----(cua- 3181 ca-)------ A-AGUAAGCG CAA-GUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----ccac- 3781 ---------G UAAAGA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-GU-GG- CA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c cc---)---- ---------- ---------- CAG-AAaacu 4021 ---------- ------ACGA --UAGCC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-u-) U-AA-G--GG -U--CGAAG- -GUGGAUUUA 4141 G-C--AGUAA A-CUGAGA(- GUAGA-GU-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAG--GGCC 4261 CUGAAG-CG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua--u- 4381 acu---ucaa agg-----ac auuua-acu- aaaa-cc--- ccu-acgcau uuauaua--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGACGA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.H.sap.3 5213 bp RNA RNA 23-JUL-1997 DEFINITION Mitochondrion Homo sapiens.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; COI gene; COII gene; COIII gene; control region; cytb gene; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; origin of replication; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. ACCESSION X93334 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; COI gene; COII gene; COIII gene; control region; cytb gene; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; origin of replication; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. SOURCE Mitochondrion Homo sapiens. ORGANISM Mitochondrion Homo sapiens. REFERENCE 1 (bases 1 to 16570) AUTHORS Arnason,U., Xu,X. and Gullberg,A. TITLE Homo and the common chimpanzee based on nonchimeric sequences Comparison between the complete mitochondrial DNA sequences of JOURNAL J. Mol. Evol. 42 (2), 145-152 (1996) STANDARD No information REFERENCE 2 (bases 1 to 16570) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (16-NOV-1995) U. Arnason, Dept of Genetics, Division Evolutionary Molec. Systematics, University of Lund, Solvegatan 29, S-223 62 LUND, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X93334 Users are requested to refer to the citation of this entry as well as the accession number in their publications. BASE COUNT 314 a 253 c 182 g 205 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aauAGGUU 661 (UGG-)U-CC U|AGCCU-UU CUA-UUAGCU -C-UUAG-UA |AG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCAUUCCAGU GAGUU---CA C|CCU-Cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-accac- -----)---- 1261 ---------- ---------- ---g--auc- a-aAAGGGAC |--------- aAGCAUCA-- 1321 -AGCACGCA- -----(GCAA ---------- ---------- ---------- ------)--- 1381 --UGC|---A GCUCA--AAA C|GCUUA-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAa----C-A 1501 GCA|GUG-AU uAACCUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUAA-CUA| 1561 A|-GCUA-U- AC-UAA--cc cca------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-C ACGAUU|--- -AAC-CCA-- 1981 AGUCA-AUAG A--------a gcCGGC|GUA AAGAGUGUUU --uaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------ucac -ccccucccc aauaaa--gc -----|UAAA acUCAC-CUG ----AGUU(G 2341 UAAAA)AACU CC-------A GUUG-AcacA AAA------- -----uagac -uAC(-GAAA 2401 -)GU|g---- ----gcuuua acaua----- ---------- ucu-gaacAC ACAAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 C--AACA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(caac)a a---A-ACUG 2701 C-U|--C|GC C-AGAA-CAC UACGAGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-C 2761 UG|GCGGUG- CUUCAUA-UC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC ACCUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G A-UGA)AGG- -----(cua- 3181 ca-)------ A-AGUAAGCG CAA-GUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----ccac- 3781 ---------G UAAAGA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-GU-GG- CA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c cc---)---- ---------- ---------- CAG-AAaacu 4021 ---------- ------ACGA --UAGCC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-u-) U-AA-G--GG -U--CGAAG- -GUGGAUUUA 4141 G-C--AGUAA A-CUGAGA(- GUAGA-GU-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAG--GGCC 4261 CUGAAG-CG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua--u- 4381 acu---ucaa agg-----ac auuua-acu- aaaa-cc--- ccu-acgcau uuauaua--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGACGA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.H.sap.4 5213 bp RNA RNA 22-APR-1997 DEFINITION Mitochondrion Homo sapiens.; 12S ribosomal RNA; 16S ribosomal RNA; circular; cytochrome; cytochrome oxidase; NADH dehydrogenase; origin of replication; ribosomal RNA; transfer RNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val; unidentified reading frame. ACCESSION V00662 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; circular; cytochrome; cytochrome oxidase; NADH dehydrogenase; origin of replication; ribosomal RNA; transfer RNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val; unidentified reading frame. SOURCE Mitochondrion Homo sapiens. ORGANISM Mitochondrion Homo sapiens. REFERENCE 1 (bases 1 to 16569) AUTHORS Coulson,A.R., Drouin,J., Eperon,I.C., Nierlich,D.P., Roe,B.A., Sanger,F., Schreier,P.H., Smith,A.J.H., Staden,R. and Young,I.G . Anderson,S., Bankier,A.T., Barrell,B.G., de Bruijn,M.H.L., TITLE Sequence and organization of the human mitochondrial genome JOURNAL Nature 290 (5806), 457-465 (1981) STANDARD No information REFERENCE 2 (bases 1 to 16569) AUTHORS Attardi,G., Chomyn,A., Doolittle,R.F., Mariottini,P. and Ragan,C.I. TITLE Seven unidentified reading frames of human mitochondrial DNA encode subunits of the respiratory chain NADH dehydrogenase JOURNAL Cold Spring Harb. Symp. Quant. Biol. 51 Pt 1, 103-114 (1986) STANDARD No information REFERENCE 3 (bases 1 to 16569) AUTHORS Bodenteich,A., Mitchell,L.G., Polymeropoulos,M.H. and Merril,C.R. TITLE Dinucleotide repeat in the human mitochondrial D-loop JOURNAL Hum. Mol. Genet. 1 (2), 140 (1992) STANDARD No information REFERENCE 4 (bases 1 to 16569) AUTHORS Lu,X., Walker,T., MacManus,J.P. and Seligy,V.L. TITLE Differentiation of HT-29 human colonic adenocarcinoma cells correlates with increased expression of mitochondrial RNA: effects of trehalose on cell growth and maturation JOURNAL Cancer Res. 52 (13), 3718-3725 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: V00662 BASE COUNT 315 a 253 c 181 g 205 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aauAGGUU 661 (UGG-)U-CC U|AGCCU-UU CUA-UUAGCU -C-UUAG-UA |AG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCGUUCCAGU GAGUU---CA C|CCU-Cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-accac- -----)---- 1261 ---------- ---------- ---g--auc- a-aAAGGAAC |--------- aAGCAUCA-- 1321 -AGCACGCA- -----(GCAA ---------- ---------- ---------- ------)--- 1381 --UGC|---A GCUCA--AAA C|GCUUA-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAa----C-A 1501 GCA|GUG-AU uAACCUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUAA-CUA| 1561 A|-GCUA-U- AC-UAA--cc cca------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-C ACGAUU|--- -AAC-CCA-- 1981 AGUCA-AUAG A--------a gcCGGC|GUA AAGAGUGUUU --uaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------ucac -ccccucccc aauaaa--gc -----|UAAA acUCAC-CUG ----AGUU(G 2341 UAAAA)AACU CC-------A GUUG-AcacA AAA------- -----uagac -uAC(-GAAA 2401 -)GU|g---- ----gcuuua acaua----- ---------- ucu-gaacAC ACAAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 C--AACA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(caac)a a---A-ACUG 2701 C-U|--C|GC C-AGAA-CAC UACGAGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-C 2761 UG|GCGGUG- CUUCAUA-UC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC ACCUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G A-UGA)AGG- -----(cua- 3181 ca-)------ A-AGUAAGCG CAA-GUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----ccac- 3781 ---------G UAAAGA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-GU-GG- CA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c cc---)---- ---------- ---------- CAG-AAaacu 4021 ---------- ------ACGA --UAGCC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-u-) U-AA-G--GG -U--CGAAG- -GUGGAUUUA 4141 G-C--AGUAA A-CUAAGA(- GUAGA-GU-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAG--GGCC 4261 CUGAAG-CG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua--u- 4381 acu---ucaa agg-----ac auuua-acu- aaaa-cc--- ccu-acgcau uuauaua--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGACGA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.H.sap.5 5213 bp RNA RNA 06-JUN-1997 DEFINITION Mitochondrion Homo sapiens.; 12S ribosomal RNA; 16S ribosomal RNA; ATPase; D-loop; circular; complete genome; cytochrome; cytochrome oxidase; displacement loop; oxidase; ribosomal RNA; transfer RNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val; unidentified reading frame. ACCESSION J01415 M12548 M58503 M63932 M63933 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; ATPase; D-loop; circular; complete genome; cytochrome; cytochrome oxidase; displacement loop; oxidase; ribosomal RNA; transfer RNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val; unidentified reading frame. SOURCE Mitochondrion Homo sapiens. ORGANISM Mitochondrion Homo sapiens. REFERENCE 1 (bases 105 to 323) AUTHORS Crews,S., Ojala,D., Posakony,J., Nishiguchi,J. and Attardi,G. TITLE Nucleotide sequence of a region of human mitochondrial DNA containing the precisely identified origin of replication JOURNAL Nature 277 (5693), 192-198 (1979) STANDARD No information REFERENCE 2 (bases 1 to 16569) AUTHORS Anderson,S., Bankier,A.T., Barrell,B.G., de Bruijn,M.H.L., Coulson,A.R., Drouin,J., Eperon,I.C., Nierlich,D.P., Roe,B.A. , Sanger,F., Schreier,P.H., Smith,A.J.H., Staden,R. and Young,I.G. TITLE Sequence and organization of the human mitochondrial genome JOURNAL Nature 290 (5806), 457-465 (1981) STANDARD No information REFERENCE 3 (bases 1 to 16569) AUTHORS Montoya,J., Ojala,D. and Attardi,G. TITLE Distinctive features of the 5'-terminal sequences of the human mitochondrial mRNAs JOURNAL Nature 290 (5806), 465-470 (1981) STANDARD No information REFERENCE 4 (bases 16015 to 16214) AUTHORS Doda,J.N., Wright,C.T. and Clayton,D.A. TITLE Elongation of displacement-loop strands in human and mouse mitochondrial DNA is arrested near specific template sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 78 (10), 6116-6120 (1981) STANDARD No information REFERENCE 5 (bases 324 to 743) AUTHORS Bogenhagen,D.F., Applegate,E.F. and Yoza,B.K. TITLE Identification of a promoter for transcription of the heavy strand of human mtDNA: in vitro transcription and deletion mutagenesis JOURNAL Cell 36 (4), 1105-1113 (1984) STANDARD No information REFERENCE 6 (bases 15888 to 15954) AUTHORS Mita,S., Monnat,R.J. Jr. and Loeb,L.A. TITLE Direct selection of mutations in the human mitochondrial tRNAThr gene: reversion of an 'uncloneable' phenotype JOURNAL Mutat. Res. 199 (1), 183-190 (1988) STANDARD No information REFERENCE 7 (bases 1 to 16569) AUTHORS Johns,D.R. and Cornblath,D.R. TITLE Molecular insight into the asymmetric distribution of pathogenetic human mitochondrial DNA deletions JOURNAL Biochem. Biophys. Res. Commun. 174 (1), 244-250 (1991) STANDARD No information REFERENCE 8 (sites) AUTHORS Moraes,C.T., Andreetta,F., Bonilla,E., Shanske,S., DiMauro, S. and Schon,E.A. TITLE Replication-competent human mitochondrial DNA lacking the heavy-strand promoter region JOURNAL Mol. Cell. Biol. 11 (3), 1631-1637 (1991) STANDARD No information REFERENCE 9 (sites) AUTHORS Rotig,A., Cormier,V., Koll,F., Mize,C., Saudubray,J.-M.M., Veerman,A., Pearson,H. and Munnich,A. TITLE Site-specific deletions of the mitochondrial genome in Pearson's marrow-pancreas syndrome JOURNAL Genomics (1991) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: J01415 L-strand is shown. Numbered RNAs are polyadenylated, presumed messengers. Several termination codons utilize 'a' or 'aa' in poly-A tail [2 ]. Alternative termination codons are 'aga' and 'agg'. Alternative initiation codons are 'ata' and 'att'. The H-chain D-loop contains a 7S RNA, starting at base 191 leftward, which is approximately 680 bases long [2]. Complete source information: Human placenta mitochondrial DNA [2]; HeLa cells mtDNA [2],[1] ,[5]; HeLa cells mt mRNA [3]; KB cells mtDNA [4]. BASE COUNT 314 a 253 c 182 g 205 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aauAGGUU 661 (UGG-)U-CC U|AGCCU-UU CUA-UUAGCU -C-UUAG-UA |AG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCGUUCCAGU GAGUU---CA C|CCU-Cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-accac- -----)---- 1261 ---------- ---------- ---g--auc- a-aAAGGGAC |--------- aAGCAUCA-- 1321 -AGCACGCA- -----(GCAA ---------- ---------- ---------- ------)--- 1381 --UGC|---A GCUCA--AAA C|GCUUA-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAa----C-A 1501 GCA|GUG-AU uAACCUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUAA-CUA| 1561 A|-GCUA-U- AC-UAA--cc cca------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-C ACGAUU|--- -AAC-CCA-- 1981 AGUCA-AUAG A--------a gcCGGC|GUA AAGAGUGUUU --uaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------ucac -ccccucccc aauaaa--gc -----|UAAA acUCAC-CUG ----AGUU(G 2341 UAAAA)AACU CC-------A GUUG-AcacA AAA------- -----uagac -uAC(-GAAA 2401 -)GU|g---- ----gcuuua acaua----- ---------- ucu-gaacAC ACAAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 C--AACA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(caac)a a---A-ACUG 2701 C-U|--C|GC C-AGAA-CAC UACGAGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-C 2761 UG|GCGGUG- CUUCAUA-UC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC ACCUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G A-UGA)AGG- -----(cua- 3181 ca-)------ A-AGUAAGCG CAA-GUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----ccac- 3781 ---------G UAAAGA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-GU-GG- CA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c cc---)---- ---------- ---------- CAG-AAaacu 4021 ---------- ------ACGA --UAGCC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-u-) U-AA-G--GG -U--CGAAG- -GUGGAUUUA 4141 G-C--AGUAA A-CUAAGA(- GUAGA-GU-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAG--GGCC 4261 CUGAAG-CG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua--u- 4381 acu---ucaa agg-----ac auuua-acu- aaaa-cc--- ccu-acgcau uuauaua--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGACGA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.H.sap.6 5213 bp RNA RNA 27-AUG-1992 DEFINITION Mitochondrion Homo sapiens.; 12S ribosomal RNA; 16S ribosomal RNA; cytochrome b; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; NADH dehydrogenase; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; transfer RNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. ACCESSION X62996 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; cytochrome b; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; NADH dehydrogenase; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; transfer RNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. SOURCE Mitochondrion Homo sapiens. ORGANISM Mitochondrion Homo sapiens. REFERENCE 1 (bases 1 to 15447) AUTHORS Marzuki,S. TITLE Direct Submission JOURNAL Submitted (25-OCT-1991) S. Marzuki, Dept Biochemistry, Monash Univ, Wellington Rd, Clayton, Victoria 3168, AUSTRALIA STANDARD No information REFERENCE 2 (bases 1 to 15447) AUTHORS Marzuki,S., Noer,S.A., Lertrit,P., Thyagarajan,D., Kapsa, R.M.I., Utthanaphol,P. and Byrne,E. TITLE Normal Variants of the Human Mitochondrial DNA and Translation Products: The Building of a Reference Data Base JOURNAL Hum. Genet. (1991) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X62996 BASE COUNT 314 a 253 c 182 g 205 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aauAGGUU 661 (UGG-)U-CC U|AGCCU-UU CUA-UUAGCU -C-UUAG-UA |AG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCGUUCCAGU GAGUU---CA C|CCU-Cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-accac- -----)---- 1261 ---------- ---------- ---g--auc- a-aAAGGAAC |--------- aAGCAUCA-- 1321 -AGCACGCA- -----(GCAA ---------- ---------- ---------- ------)--- 1381 --UGC|---A GCUCA--AAA C|GCUUA-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAa----C-A 1501 GCA|GUG-AU uAACCUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUAA-CUA| 1561 A|-GCUA-U- AC-UAA--cc cca------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-C ACGAUU|--- -AAC-CCA-- 1981 AGUCA-AUAG A--------a gcCGGC|GUA AAGAGUGUUU --uaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------ucac -ccccucccc aauaaa--gc -----|UAAA acUCAC-CUG ----AGUU(G 2341 UAAAA)AACU CC-------A GUUG-AcacA AAA------- -----uagac -uAC(-GAAA 2401 -)GU|g---- ----gcuuua acaua----- ---------- ucu-gaacAC ACAAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 C--AACA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(caac)a a---A-ACUG 2701 C-U|--C|GC C-AGAA-CAC UACGAGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-C 2761 UG|GCGGUG- CUUCAUA-UC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC ACCUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G A-UGA)AGG- -----(cua- 3181 ca-)------ A-AGUAAGCG CAA-GUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----ccac- 3781 ---------G UAAAGA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-GU-GG- CA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c cc---)---- ---------- ---------- CAG-AAaacu 4021 ---------- ------ACGA --UAGCC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-u-) U-AA-G--GG -U--CGAAG- -GUGGAUUUA 4141 G-C--AGUAA A-CUGAGA(- GUAGA-GU-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAG--GGCC 4261 CUGAAG-CG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua--u- 4381 acu---ucaa agg-----ac auuua-acu- aaaa-cc--- ccu-acgcau uuauaua--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGACGA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.panis 5213 bp RNA RNA 19-JAN-1986 DEFINITION Mitochondrion Pan paniscus(pygmy chimpanzee). ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Pan paniscus(pygmy chimpanzee). ORGANISM Mitochondrion Pan paniscus(pygmy chimpanzee). REFERENCE 1 (bases 1 to 15447) AUTHORS No information JOURNAL 1(1986) STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5213) Corresponding GenBank entry: D38116 Phylo:Mitochondria,Animal,Mammal,Pan same as D38116 BASE COUNT 315 a 246 c 180 g 209 t 4263 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aacAGGUU 661 (UGG-)U-CC U|AGCCU-UU CUA-UUAGCU -C-UUAG-UA |AG-AU--UA -CAC-A-UGC 721 -AAG------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cau c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- -CGUCCC-GU GAGU----CA C|CCU-Cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-accau- -----)---- 1261 ---------- ---------- ---g--auc- a-aAAGGAAC |--------- aAGUAUCA-- 1321 -AGCACACA- -----(GCAA ---------- ---------- ---------- ------)--- 1381 --UGC|---A GCUCA--AGA C|GCUUA-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AU AAACCUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUAA-CUA| 1561 A|-GCCA-U- AC-UAA--cc uca------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -CAA-U---U UCGU-G(-CU AGCCACC-GC -GGU-CA)-C ACGAUU|--- -AAC-CCA-- 1981 AGUCA-AUAG A--------a acCGGC|GUA AAGAGUGUUU --uaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------ucac -ccccccccc aauaaa--gc -----|UAAA auUCAC-CUG ----AGUU(G 2341 UAAAA)AACU CC-------A GCUG-AuacA AAA------- -----uaaac -uAC(-GAAA 2401 -)GU|g---- ----gcuuua acaca----- ---------- ucu-gaacAC ACAAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CUU 2521 C--AACA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(uaac)a a---A-ACUG 2701 C-U|--C|GC C-AGAA-CAC UACGAGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-C 2761 UG|GCGGUG- CUUCAUA-UC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC GCCUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G A-UGA)AGG- -----(uua- 3181 ca-)------ A-AGUAAGCG CAA-GUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----ccac- 3781 ---------G UAAAGA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-G-GC-GG- CA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c cc---)---- ---------- ---------- CAG-AAaauu 4021 ---------- ------ACGA --UAACC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-G--GG -U--CGAAG- -GUGGAUUUA 4141 G-C--AGUAA A-CUAAGA(- GUAGA-GU-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAG--GGCC 4261 CUGAAG-CG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua--u- 4381 acu---ucaa agg-----au auuua-acu- uaaa-cc--- ccu-acgcau uuauaua--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGACGA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.tro.1 5213 bp RNA RNA ~?~???? DEFINITION Mitochondrion Pan troglodytes(common chimpanzee). ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Pan troglodytes(common chimpanzee). ORGANISM Mitochondrion Pan troglodytes(common chimpanzee). REFERENCE 1 (bases 1 to 15447) AUTHORS No information JOURNAL 1(1986) STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5213) Corresponding GenBank entry: D38113 Phylo:Mitochondria,Animal,Mammal,Pan same as D38113 BASE COUNT 315 a 244 c 179 g 211 t 4264 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aacAGGUU 661 (UGG-)U-CC U|AGCCU-UU CUA-UUAGCU -C-UUAG-UA |AG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCGCCCC-GU GAGU----CA C|CCU-Cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-gccau- -----)---- 1261 ---------- ---------- ---g--auc- a-aAAGGAAC |--------- aAGUAUCA-- 1321 -AGCACGCA- -----(GCAA ---------- ---------- ---------- ------)--- 1381 --UGC|---A GCUCA--AAA C|GCUUA-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AU AAACCUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUAA-CUA| 1561 A|-GCCA-U- AC-UAA--cc uca------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -CAA-U---U UCGU-G(-CU AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUCA-AUAG A--------a acCGGC|GUA AAGAGUGUUU --uaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- -------uca 2281 cc-------- ------cccc cauaaa--gc -----|UAAA auUCAC-CUG ----AGUU(G 2341 UAAAA)AACU CC-------A GCUG-AuacA AAA------- -----uaaac -uAC(-GAAA 2401 -)GU|g---- ----gcuuua acaca----- ---------- ucu-gaauAC ACAAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CUU 2521 C--AACA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(uaac)a a---A-ACUG 2701 C-U|--C|GC C-AGAA-CAC UACGAGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-C 2761 UG|GCGGUG- CUUCAUA-UC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC GCCUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G A-UGA)AGG- -----(uua- 3181 ca-)------ A-AGUAAGCA CAA-GUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----ccac- 3781 ---------G UAAAGA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-G-GU-GG- CA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c cc---)---- ---------- ---------- CAG-AAaauu 4021 ---------- ------ACGA --UAACC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-G--GG -U--CAAAG- -GUGGAUUUA 4141 G-C--AGUAA A-CUAAGA(- GUAGA-GU-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAG--GGCC 4261 CUGAAG-CG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua--u- 4381 acu---ucaa agg-----au acuua-acu- uaaa-ccc-- ccu-acguau uuauaua--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGACGA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.tro.2 5213 bp RNA RNA 11-APR-1996 DEFINITION Mitochondrion Pan troglodytes.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; COI gene; COII gene; COIII gene; control region; cytb gene; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; origin of replication; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. ACCESSION X93335 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; COI gene; COII gene; COIII gene; control region; cytb gene; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; origin of replication; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. SOURCE Mitochondrion Pan troglodytes. ORGANISM Mitochondrion Pan troglodytes. REFERENCE 1 (bases 1 to 16561) AUTHORS Arnason,U., Xu,X. and Gullberg,A. TITLE Comparison between the complete mitochondrial DNA sequences of Homo and the common chimpanzee based on non-chimaeric sequences JOURNAL J. Mol. Evol. 42, 145-152 (1996) STANDARD No information REFERENCE 2 (bases 1 to 16561) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (16-NOV-1995) U. Arnason, Dept of Genetics, Division Evolutionary Molec. Systematics, University of Lund, Solvegatan 29, S-223 62 LUND, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X93335 NCBI gi: 1262390 BASE COUNT 313 a 250 c 182 g 211 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aacAGGUU 661 (UGG-)U-CC U|AGCCU-UU CUA-UUAGCU -C-UUAG-UA |AG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCGCCCCGGU GAGU----CA C|CCU-Cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-gccau- -----)---- 1261 ---------- ---------- ---g--auc- a-aAAGGAAC |--------- aAGUAUCA-- 1321 -AGCACGCA- -----(GCAA ---------- ---------- ---------- ------)--- 1381 --UGC|---A GCUCA--AAA C|GCUUA-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AU AAACCUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUAA-CUA| 1561 A|-GCCA-U- AC-UAA--cc cua------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCUACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUCA-AUAG A--------a acCGGC|GUA AAGAGUGUUU --uaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- -------uca 2281 cc-------c -ccccccccc cauaaa--gc -----|UAAA auUCAC-CUG ----AGUU(G 2341 UAAAA)AACU CC-------A GCUG-AuacA AAA------- -----uaaac -uAC(-GAAA 2401 -)GU|g---- ----gcuuua acaca----- ---------- ucu-gaauAC ACAAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CUU 2521 C--AACA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(uaac)a a---A-ACUG 2701 C-U|--C|GC C-AGAA-CAC UACGAGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-C 2761 UG|GCGGUG- CUUCAUA-UC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC GCCUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G A-UGA)AGG- -----(uua- 3181 ca-)------ A-AGUAAGCA CAA-GUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----ccac- 3781 ---------G UAAGGA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-G-GU-GG- CA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c cc---)---- ---------- ---------- CAG-AAaauu 4021 ---------- ------ACGA --UAACC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-G--GG -U--CGAAG- -GUGGAUUUA 4141 G-C--AGUAA A-CUAAGA(- GUAGA-GU-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAG--GGCC 4261 CUGAAG-CG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua--u- 4381 acu---ucaa agg-----au acuua-acu- uaaa-ccc-- ccu-acguau uuauaua--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGACGA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.tro.3 5213 bp RNA RNA 11-APR-1996 DEFINITION Mitochondrion Pan troglodytes.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION X93342 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Pan troglodytes. ORGANISM Mitochondrion Pan troglodytes. REFERENCE 1 (bases 1 to 962) AUTHORS Arnason,U., Xu,X. and Gullberg,A. TITLE sequences Comparison between the complete mitochondrial DNA sequences of Homo and the common chimpanzee based on non-chimaeric JOURNAL J. Mol. Evol. 42, 145-152 (1996) STANDARD No information REFERENCE 2 (bases 1 to 962) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (16-NOV-1995) U. Arnason, Dept of Genetics, Division Evolutionary Molec. Systematics, University of Lund, Solvegatan 29, S-223 62 LUND, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X93342 NCBI gi: 1262384 BASE COUNT 314 a 258 c 183 g 207 t 4251 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aacAGGUU 661 (UGG-)U-CC U|AGCCU-UU CUA-UUAGCC -C-UUAG-UA |AG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCGCCCCGGU GAGU----CA C|CCU-Cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-gccau- -----)---- 1261 ---------- ---------- ---g--auc- a-aAAGGAAC |--------- aAGUAUCA-- 1321 -AGCACGCA- -----(GCAA ---------- ---------- ---------- ------)--- 1381 --UGC|---A GCUCA--AAA C|GCUUA-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AU AAACCUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUAA-CUA| 1561 A|-GCCA-U- AC-UAA--cc cua------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCUACC-GC -GGU-CA)-C ACGAUU|--- -AAC-CCA-- 1981 AGUCA-AUAG A--------a acCGGC|GUA AAGAGUGUUU --uaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- -------uca 2281 ac--cccccc cccccccccc aauaaa--gc -----|UAAA acUCAC-CUG ----AGUU(G 2341 UAAAA)AACU CC-------A GCUG-AuacA AAA------- -----uaaac -uAC(-GAAA 2401 -)GU|g---- ----gcuuua acaca----- ---------- ucu-gaauAC ACAAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CUU 2521 C--AACA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(uaac)a a---A-ACUG 2701 C-U|--C|GC C-AGAA-CAC UACGAGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-C 2761 UG|GCGGUG- CUUCAUA-UC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC GCCUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G A-UGA)AGG- -----(uua- 3181 ca-)------ A-AGUAAGCG CAA-GUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----ccac- 3781 ---------G UAAGGA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-G-GU-GG- CA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c cc---)---- ---------- ---------- CAG-AAaauu 4021 ---------- ------ACGA --UAACC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-G--GG -U--CGAAG- -GUGGAUUUA 4141 G-C--AGUAA A-CUAAGA(- GUAGA-GU-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAG--GGCC 4261 CUGAAG-CG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua--u- 4381 acu---ucaa agg-----au acuua-acu- uaaa-ccc-- ccu-augcau uuauaua--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGACGA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.tro.4 5213 bp RNA RNA 11-APR-1996 DEFINITION Mitochondrion Pan troglodytes.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION X93340 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Pan troglodytes. ORGANISM Mitochondrion Pan troglodytes. REFERENCE 1 (bases 1 to 961) AUTHORS Arnason,U., Xu,X. and Gullberg,A. TITLE Homo and the common chimpanzee based on non-chimaeric sequences Comparison between the complete mitochondrial DNA sequences of JOURNAL J. Mol. Evol. 42, 145-152 (1996) STANDARD No information REFERENCE 2 (bases 1 to 961) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (16-NOV-1995) U. Arnason, Dept of Genetics, Division Evolutionary Molec. Systematics, University of Lund, Solvegatan 29, S-223 62 LUND, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X93340 NCBI gi: 1262385 BASE COUNT 314 a 257 c 183 g 207 t 4252 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aacAGGUU 661 (UGG-)U-CC U|AGCCU-UU CUA-UUAGCC -C-UUAG-UA |AG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCGCCCCGGU GAGU----CA C|CCU-Cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-gccau- -----)---- 1261 ---------- ---------- ---g--auc- a-aAAGGAAC |--------- aAGUAUCA-- 1321 -AGCACGCA- -----(GCAA ---------- ---------- ---------- ------)--- 1381 --UGC|---A GCUCA--AAA C|GCUUA-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AU AAACCUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUAA-CUA| 1561 A|-GCCA-U- AC-UAA--cc cua------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCUACC-GC -GGU-CA)-C ACGAUU|--- -AAC-CCA-- 1981 AGUCA-AUAG A--------a acCGGC|GUA AAGAGUGUUU --uaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- -------uca 2281 ac---ccccc cccccccccc aauaaa--gc -----|UAAA ACUCAC-CUG ----AGUU(G 2341 UAAAA)AACU CC-------A GCUG-AUACA AAA------- -----uaaac -uAC(-GAAA 2401 -)GU|g---- ----gcuuua acaca----- ---------- ucu-gaauAC ACAAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CUU 2521 C--AACA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(uaac)a a---A-ACUG 2701 C-U|--C|GC C-AGAA-CAC UACGAGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-C 2761 UG|GCGGUG- CUUCAUA-UC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC GCCUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G A-UGA)AGG- -----(uua- 3181 ca-)------ A-AGUAAGCG CAA-GUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----ccac- 3781 ---------G UAAGGA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-G-GU-GG- CA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c cc---)---- ---------- ---------- CAG-AAaauu 4021 ---------- ------ACGA --UAACC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-G--GG -U--CGAAG- -GUGGAUUUA 4141 G-C--AGUAA A-CUAAGA(- GUAGA-GU-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAG--GGCC 4261 CUGAAG-CG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua--u- 4381 acu---ucaa agg-----au acuua-acu- uaaa-ccc-- ccu-augcau uuauaua--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGACGA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.pyg.a 5213 bp RNA RNA 18-DEC-1996 DEFINITION Mitochondrion Pongo pygmaeus abelii.; 12S rRNA; 16S rRNA; ATPase 6 gene; ATPase 8 gene; COI gene; COII gene; COIII gene; cytochrome b; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. ACCESSION X97707 KEYWORDS 12S rRNA; 16S rRNA; ATPase 6 gene; ATPase 8 gene; COI gene; COII gene; COIII gene; cytochrome b; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Mitochondrion Pongo pygmaeus abelii. ORGANISM Mitochondrion Pongo pygmaeus abelii. REFERENCE 1 (bases 1 to 16499) AUTHORS Xu,X. and Arnason,U. TITLE orangutan The mitochondrial DNA molecule of Sumatran orangutan and a molecular proposal for two (Bornean and Sumatran) species of JOURNAL J. Mol. Evol. 43, 431-437 (1996) STANDARD No information REFERENCE 2 (bases 1 to 16499) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (09-MAY-1996) U. Arnason, University of Lund, Department of Genetics, Division of Evolutionary Molecular Systematics, Solvegatan 29, S-223 63 Lund, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X97707 BASE COUNT 299 a 251 c 196 g 208 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aauAGGUU 661 (UGG-)U-CC U|AGCCU-UU CUA-UUAGCU -C-UUAG-UG |AG-GU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCGCCCCAGU GAGU----CG C|CCU-Ccaa --gu-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-acucu- -----)---- 1261 ---------- ---------- ---g--acu- a-aGAGGAGC |--------- aAGCAUCA-- 1321 -AGCACGCA- -----(ACAG ---------- ---------- ---------- ------)--- 1381 --CGC|---A GCUCA--AGA C|GCUCA-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AU AAGUCUUUAG C-AAUAAAC( ---------- ----GAAA)G UUCAA-CUA| 1561 A|-GCUA-C- AC-UAA--cc cca------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -CAA-C---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-C ACGAUU|--- -AGC-CCA-- 1981 AGUUA-AUAG A--------g auCGGC|GUA GAGAGUGUUU --uaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----uucuu -uuucucccc aauaaa--gc -----|UAAA auUUAC-CUG ----AGUU(G 2341 UAGAA)AACU UA-------A GCUA-AuacA AAA------- -----uaaac -uAC(-GAAA 2401 -)GU|g---- ----gcuuua auaua----- ---------- ucu-gaacAC ACAAU-AGCU 2461 A-AGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CUU 2521 U--AACA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(caac)a a---A-ACUG 2701 C-U|--C|GC C-AGAA-CAC UACGAGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-C 2761 UG|GCGGUG- CUUCAUA-UC CCUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC ACCCCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G A-UGA)AGG- -----(cca- 3181 cg-)------ A-AGUAAGCG CAA-GCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----ccac- 3781 ---------A UAAAGA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 G-A-GU-GG- CA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c uu---)---- ---------- ---------- CAG-AAaacu 4021 ---------- ------ACGA --UAGCC-CU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-GA-G--GG -U--CGAAG- -GUGGAUUUA 4141 G-C--AGUAA A-CUAAGA(- GUAGA-GU-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAG--GGCC 4261 CUGAAG-CG- CGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua--u- 4381 auu---ucag gga-----cu accua-acu- aaaa-cc--- ccc-acgcau cuauaua--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGG-C AAGUCGUAAC AUGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGACGA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.pygma 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Pongo pygmaeus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Pongo pygmaeus. ORGANISM Mitochondrion Pongo pygmaeus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: D38115 LOCUS ORAMTD 16389 bp ds-DNA ORG 08-FEB-1995 DEFINITION Mitochondrion Pongo pygmaeus gene. ACCESSION D38115 KEYWORDS 12srRNA; 16srRNA; ATPase subunit 6; ATPase subunit 8; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; cytochrome b; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Mitochondrion Pongo pygmaeus (organelle Mitochondrion Pongo pygmaeus) DNA. ORGANISM Mitochondrion Pongo pygmaeus Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Pongidae. REFERENCE 1 (sites) AUTHORS Horai,S., Satta,Y., Hayasaka,K., Kondo,R., Inoue,T., Ishida,T., Hayashi,S. and Takahata,N. TITLE Man's place in Hominoidea revealed by mitochondrial DNA genealogy [published erratum appears in J Mol Evol 1993 Jul;37(1):89] JOURNAL J. Mol. Evol. 35 (1), 32-43 (1992) MEDLINE 92389366 REFERENCE 2 (sites) AUTHORS Horai,S., Hayasaka,K., Kondo,R., Tsugane,K. and Takahata,N. TITLE Recent African origin of modern humans revealed by complete sequences of hominoid mitochondrial DNAs JOURNAL Proc Natl Acad Sci U S A 92, 532-536 (1994) REFERENCE 3 (bases 1 to 16389) AUTHORS Horai,S. and Hayasaka,K. JOURNAL Unpublished (1995) COMMENT Submitted (02-Sep-1994) to DDBJ by: Kenji Hayasaka Depertment of Human Genetics National Institute of Genetics 1111 Yata, Mishimashi Shizuoka 411 Japan Phone: 0559-75-0771 x568 Email: khayasak@ddbj.nig.ac.jp Fax: 0559-75-6040. NCBI gi: 644494 FEATURES Location/Qualifiers source 1..16389 /organism="Mitochondrion Pongo pygmaeus" /mitochondrion /sequenced_mol="DNA" tRNA 1..71 /product="tRNA-Phe" rRNA 72..1024 /product="12srRNA" tRNA 1025..1093 /product="tRNA-Val" rRNA 1094..2651 /product="16srRNA" tRNA 2652..2726 /product="tRNA-Leu(UUR)" mat_peptide 2729..3682 /codon=(seq:'ata', aa:Met) /codon=(seq:'tga', aa:Trp) /codon_start=1 /product="NADH dehydrogenase subunit 1" tRNA 3685..3753 /product="tRNA-Ile" tRNA complement(3751..3822) /product="tRNA-Gln" tRNA 3824..3891 /product="tRNA-Met" mat_peptide 3892..4932 /codon_start=1 /product="NADH dehydrogenase subunit 2" tRNA 4934..4999 /product="tRNA-Trp" tRNA complement(5006..5074) /product="tRNA-Ala" tRNA complement(5076..5148) /product="tRNA-Asn" tRNA complement(5181..5247) /product="tRNA-Cys" tRNA complement(5247..5313) /product="tRNA-Tyr" mat_peptide 5332..6870 /codon_start=1 /product="Cytochrome C oxidase subunit 1" tRNA complement(6873..6944) /product="tRNA-Ser(UCN)" tRNA 6946..7013 /product="tRNA-Asp" CDS 7014..7697 /note="NCBI gi: 644495" /codon_start=1 /product="Cytochrome C oxidase subunit 2" /translation="MAHAAQVGLQDATSPIIEELVIFHDHALIIIFLICFLVLYALFL TLTTKLTNTNISDAQEIETIWTILPAIILILIALPSLRILYLTDEINDPSFTIKSIGH QWYWTYEYTDYGGLIFNSYMLPPLFLEPGDLRLLDVDNRVVLPVEAPVRIIITSQDVL HSWTVPSLGLKTDAIPGRLNQTTFTATRPGVYYGQCSEICGANHSFMPIVLELIPLKI FEIGPVFAL" tRNA 7740..7809 /product="tRNA-Lys" CDS 7811..8017 /note="NCBI gi: 644496" /codon_start=1 /product="ATPase subunit 8" /translation="MPQLNTTTWLTVITPTLLALFLITQLKLLNSHLHPPTPPKFTKT KPHAKPWELKWTKIYSPHSLPPQS" mat_peptide 7972..8649 /codon_start=1 /product="ATPase subunit 6" mat_peptide 8652..9434 /codon_start=1 /product="Cytochrome C oxidase subunit 3" tRNA 9436..9503 /product="tRNA-Gly" mat_peptide 9504..9848 /codon_start=1 /product="NADH dehydrogenase subunit 3" tRNA 9850..9914 /product="tRNA-Arg" CDS 9915..10211 /note="NCBI gi: 644497" /codon_start=1 /product="NADH dehydrogenase subunit 4L" /translation="MPLIYINITLAFTISLLGMLVYRSHLISSLLCLEGIMLSLFIII TLITLNTHSLLANIIPITILVFAACEAAVGLALLASISNTYGLDYVNNLNLLQC" mat_peptide 10205..11581 /codon_start=1 /product="NADH dehydrogenase subunit 4" tRNA 11583..11651 /product="tRNA-His" tRNA 11652..11709 /product="tRNA-Ser(AGY)" tRNA 11710..11780 /product="tRNA-Leu(CUN)" CDS 11781..13592 /note="NCBI gi: 644498" /codon_start=1 /product="NADH dehydrogenase subunit 5" /translation="MAMFTTITALTLTSLIPPITATLINPNKKNSYPHYVKTAIASAF TISLIPTTIFICLGQETIITNWCWTTTQTLQLSLSFKLDYFSITFLPVALFVTWSIIE FSLWYIASDPNINQFFKYLLIFLITIIILITANNLLQLFIGWEGVGIISFLLISWWYA RTDANTAAIQAILYNRIGDIGFILTLAWFLLHSNSWELQQVFLLNNNPNLLPLLGLLL AAAGKSAQLGLHPWLPSAIEGPTPVSALLHSSTMVVAGIFLLIRFHPLMENNPPIQTL ALCLGAITTLFAAICALTQNDIKKIVAFSTSSQLGLIIVTIGINQPHLAFLHICTHAF FKALLFMCSGSIIHNLNNEQDIRKIGGLLKTIPLTSTSLTISSLALAGIPFLSGFYSK DLIIETASISYTNAWALSITLIATSLTSAYSTRIILHTLTGKPLLPTPISINENNPTL LNPIKRLMTGSLFTGFLITSNIPPTSLPQTTTPLYLKLAALTATLLGLLVALDLNYLA NKLKVKTPPPAFYFSTILGFYPNIIHRIIPHLSLLISQNLSLLLLDLTWLEKLIPKAI SQHQTSASTTISTQKGIIKLYFLSFLIPLLLTLLIIS" mat_peptide complement(13593..14117) /codon_start=1 /product="NADH dehydrogenase subunit 6" tRNA complement(14118..14186) /product="tRNA-Glu" mat_peptide 14191..15330 /codon_start=1 /product="Cytochrome b" tRNA 15332..15397 /product="tRNA-Thr" tRNA complement(15403..15472) /product="tRNA-Pro" D-loop 15473..16389 /note="D-loop-region" BASE COUNT 5007 a 5317 c 2168 g 3897 t ORIGIN BASE COUNT 306 a 254 c 190 g 203 t 4260 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aacAGGUU 661 (UGG-)U-CC U|AGCCU-UU CUA-UUAGCC -C-UUAG-UG |AG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCGCCCCAGU GAGU----CG C|CCU-Ccaa --gc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-acucu- -----)---- 1261 ---------- ---------- ---g--acu- a-aGAGGAAC |--------- aAGCAUCA-- 1321 -AGCACGCA- -----(ACAA ---------- ---------- ---------- ------)--- 1381 --CGC|---A GCUCA--AGA C|GCUUA-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AC AAAUCUUUAG C-AAUGAAC( ---------- ----GAAA)G UUCAA-CUA| 1561 A|-GCUA-C- AC-UAG--cc aca------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCU|-GGU 1921 -CAA-C---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-C ACGAUU|--- -AGC-CCA-- 1981 AGUUA-AUAG A--------g auCGGC|GUA GAGAGUGUUU --uaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------uuuu -uuucccccc aauaaa--gc -----|UAAA auUUAC-CUG ----AGUU(G 2341 UAGAA)AACU UA-------A GUUA-AuacA AAA------- -----uaaac -uAC(-GAAA 2401 -)GU|g---- ----gcuuua auaua----- ---------- ucu-gaacAC ACAAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CUU 2521 U--AACA-GU |UG|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(caac)a a---A-ACUG 2701 C-U|--C|GC C-AGAA-CAC UACGAGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-C 2761 UG|GCGGUG- CUUCAUA-CC CCCCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC ACCCCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G A-UGA)AGG- -----(cca- 3181 cg-)------ A-AGUAAGCG CAA-ACAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----ccac- 3781 ---------G UAAAGA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 G-A-GU-GG- CA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c uu---)---- ---------- ---------- CAG-AAaacu 4021 ---------- ------ACGA --UAACC-CU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-u-) U-GA-A--GG -U--CGAAG- -GUGGAUUUA 4141 G-C--AGUAA A-CUAAGA(- GUAGA-GU-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAA--GGCC 4261 CUGAAG-CG- CGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua--u- 4381 auu---ucag gga-----cu accua-acu- aaaa-cc--- ccc-acgcau cuauaua--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAAG-AGG-C AAGUCGUAAC AUGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGACGA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (21)-Hylob 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.H.lar.1 5213 bp RNA RNA 09-JUL-1998 DEFINITION Mitochondrion Hylobates lar.; . ACCESSION AF0699 7 KEYWORDS . SOURCE Mitochondrion Hylobates lar. ORGANISM Mitochondrion Hylobates lar. REFERENCE 1 (bases 1 to 922) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Platyrrhine Systematics: A Simultaneous Analysis of Molecular and Morphological Data JOURNAL Am. J. Phys. Anthropol. 106, 261-281 (1998) STANDARD No information REFERENCE 2 (bases 1 to 922) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Direct Submission JOURNAL Submitted (04-JUN-1998) Vertebrate Paleontology, American Museum of Natural History, Central Park West at 79th St., New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF069967 BASE COUNT 305 a 253 c 180 g 184 t 4291 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~GCC ---CUGG-CA |AG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCGCCCCGGU GAAAU---CG C|CCU-Ucaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-acccgu -----)---- 1261 ---------- ---------- ---g--auc- a-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACGCA- -----(GUAA ---------- ---------- ---------- ------)--- 1381 --UGC|---A GCUCA--AAA C|ACCCU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AU AAACCUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUAA-CUA| 1561 A|-GCUA-U- GC-CAA--cc ca-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -CAA-C---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCC-- 1981 AGUUA-AUAG A--------g ccCGGC|GUA AAGAGUGUUU --uaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- uugcu-cccu aauaaa--gc -----|UAAG cuCCAU-CCA ----AGUC(G 2341 UAAAA)AACU CU-------G GCUG-GuauA AAA------- -----uaaac -uAC(-GAAA 2401 -)GU|g---- ----gcuuua acacc----- ---------- ucu-gaauAC ACAAU-AGCU 2461 G-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CCUAAA-CUU 2521 C--AACA-GU |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(caac)a a---G-ACUG 2701 C-U|--C|GC C-AGAA-CAC UACGAGC(-- -AACA--)GC UUA--AAAAU CAAAGGAC-C 2761 UG|GCGGUG- CUUCACA-CC CCCCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGUUC A-ACCUCACC AUCUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G A-CAA)AGG- -----(cua- 3181 ua-)------ A-AGUAAGCA CAA-ACAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----ccac- 3781 ---------A UAAAGA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-AU-GG- GA-AGA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u gc---)---- ---------- ---------- CAG-AAaacc 4021 ---------- ------ACGA --UAACC-CU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAC-U-) U-GA-GC-GG -U--CGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- AUAGA-GU-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAA--GGCC 4261 CUGAAG-CG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagcaua-- 4381 -uu---ucaa gga----acc ccuaacuaa- auac------ ucc-acgcau cua-ugua-- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGACAA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.H.lar.2 5213 bp RNA RNA 23-OCT-1996 DEFINITION Mitochondrion Hylobates lar.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase subunit 6; ATPase subunit 8; COI gene; COII gene; COIII gene; cytb gene; cytochrome b; cytochrome oxidase I; cytochrome oxidase II; cytochrome oxidase III; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; tRNA-Ala gene; tRNA-Arg gene; tRNA-Asn gene; tRNA-Asp gene; tRNA-Cys gene; tRNA-Gln gene; tRNA-Glu gene; tRNA-Gly gene; tRNA-His gene; tRNA-Ile gene; tRNA-Leu gene; tRNA-Lys gene; tRNA-Met gene; tRNA-Phe gene; tRNA-Pro gene; tRNA-Thr gene; tRNA-Trp gene; tRNA-Tyr gene. ACCESSION X99256 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase subunit 6; ATPase subunit 8; COI gene; COII gene; COIII gene; cytb gene; cytochrome b; cytochrome oxidase I; cytochrome oxidase II; cytochrome oxidase III; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; tRNA-Ala gene; tRNA-Arg gene; tRNA-Asn gene; tRNA-Asp gene; tRNA-Cys gene; tRNA-Gln gene; tRNA-Glu gene; tRNA-Gly gene; tRNA-His gene; tRNA-Ile gene; tRNA-Leu gene; tRNA-Lys gene; tRNA-Met gene; tRNA-Phe gene; tRNA-Pro gene; tRNA-Thr gene; tRNA-Trp gene; tRNA-Tyr gene. SOURCE Mitochondrion Hylobates lar. ORGANISM Mitochondrion Hylobates lar. REFERENCE 1 (bases 1 to 16472) AUTHORS Arnason,U., Gullberg,A. and Xu,X. TITLE gibbon, Hylobates lar, and comparison among individual mitochondrial genes of all hominoid genera A complete mitochondrial DNA molecule of the white-handed JOURNAL Hereditas 124, 185-189 (1996) STANDARD No information REFERENCE 2 (bases 1 to 16472) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (09-JUL-1996) U. Arnason, University of Lund, Department of Genetics, Division of Evolutionary Molecular Systematics, Solvegatan 29, 22362 Lund, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X99256 BASE COUNT 310 a 260 c 185 g 196 t 4262 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aauAGGUU 661 (UGG-)U-CC U|AGCCU-UU CUA-UUAGCC -C-CUGG-CA |AG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCGCCCCGGU GAAAU---CG C|CCU-Ucaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(acccgu- -----)---- 1261 ---------- ---------- ---g--auc- a-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACGCA- -----(GUAA ---------- ---------- ---------- ------)--- 1381 --UGC|---A GCUCA--AAA C|ACCCU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AU AAACCUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUAA-CUA| 1561 A|-GCUA-U- GC-CAA--cc ca-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -CAA-C---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCC-- 1981 AGUUA-AUAG A--------g ccCGGC|GUA AAGAGUGUUU --uaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------uug- ----cucccu aauaaa--gc -----|UAAG cuCCAU-CCA ----AGUC(G 2341 UAAAA)AACU CU-------G GCUG-CuauA AAA------- -----uaaac -uAC(-GAAA 2401 -)GU|g---- ----gcuuua acacc----- ---------- ucu-gaauAC ACAAU-AGCU 2461 G-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CCUAAA-CUU 2521 C--AACA-GU |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(caac)a a---G-ACUG 2701 C-U|--C|GC C-AGAA-CAC UACGAGC(-- -AACA--)GC UUA--AAAAU CAAAGGAC-C 2761 UG|GCGGUG- CUUCACA-CC CCCCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGUUC A-ACCUCACC AUCUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(G A-CAA)AGG- -----(cua- 3181 ua-)------ A-AGUAAGCA CAA-ACAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----ccac- 3781 ---------A UAAAGA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-AU-GG- GA-AGA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u gc---)---- ---------- ---------- CAG-AAaacc 4021 ---------- ------ACGA --UAACC-CU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-u-) U-GA-Gc-GG -U--CGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- AUAGA-GU-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAA--GGCC 4261 CUGAAG-CG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagca--u- 4381 auu---ucaa gga-----ac cccua-acu- aaau-ac--- ucc-acgcau cuaugua--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGACAA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (20)-platy 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.C.goeld 5213 bp RNA RNA 09-JUL-1998 DEFINITION Mitochondrion Callimico goeldii.; . ACCESSION AF0699 1 KEYWORDS . SOURCE Mitochondrion Callimico goeldii. ORGANISM Mitochondrion Callimico goeldii. REFERENCE 1 (bases 1 to 927) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Platyrrhine Systematics: A Simultaneous Analysis of Molecular and Morphological Data JOURNAL Am. J. Phys. Anthropol. 106, 261-281 (1998) STANDARD No information REFERENCE 2 (bases 1 to 927) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Direct Submission JOURNAL Submitted (04-JUN-1998) Vertebrate Paleontology, American Museum of Natural History, Central Park West at 79th St., New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF069981 BASE COUNT 329 a 216 c 176 g 206 t 4286 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~GCC -C-UCAG-UA |AG-AC--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCGACCCUGU GAGAA---UG C|CCU-Ccau --ca-g---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-aacau- -----)---- 1261 ---------- ---------- ---------- ---GAGGAGC |--------- aAGUAUCA-- 1321 -AGCACGCA- -----(aaca ---------- ---------- ---------- ------)--- 1381 --UGC|---A GCUCA--AGA C|ACUUU-GC --|------- (-aca--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG AAa----C-A 1501 GCA|GUG-AC AGACUUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUAA-CUA| 1561 A|-GCUA-C- AC-UGA--ua acca------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -GAC-UCA-- 1981 AGUUA-AUAG A--------g uuCGGC|GUA AAGAGUGUUU --aaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------ua ggguauauuu aauaaa--gc -----|UAAC cuACAA-CUA ----AGUC(G 2341 UAAAA)AACC UC-------A GUUG-CaauA AAA------- -----uacuc -uAC(-GAAA 2401 -)GU|g---- ----gcuuua uaauau---- ---------- ucu-gaacAC ACUAC-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCU 2521 A--AAUG-AC |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(uaac)a a---A-AUCA 2701 U-U|--C|GC C-AGAA-CAC UACAAGC(-- -AACA--)GC UUG--AAAUU CAAAGGAC-C 2761 UG|GCGGUG- CUUUACA-UC CGUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAUACC 2821 C--------- ----)CGAUA A-ACCUUACC ACAUCUAGCC gu-------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|UC-(C U-UAA)UGA- -----(uug- 3181 ua-)------ A-AGUAAGCA GAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cauc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGCA|GCC AAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ac---)---- ---------- ---------- CAG-AAaacu 4021 ac-------- ------ACGA --UAACU-CC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAU-C-) U-AG-G--AG -C--CUAAG- -GUGGAUUUA 4141 G-C--AGUAA A-CCAAGA(- GUAGA-GA-- --)GCUUGAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- aCAA--GGCC 4261 AUUAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaca--u- 4381 cacau-aaaa gua------c acuaacaa-- uuaaa-a--- cacuaaa-ua cugaucua-- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-GGA-U AAGUCGUAAC AUGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGGUAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.jacch 5213 bp RNA RNA 09-JUL-1998 DEFINITION Mitochondrion Callithrix jacchus.; . ACCESSION AF0699 2 KEYWORDS . SOURCE Mitochondrion Callithrix jacchus. ORGANISM Mitochondrion Callithrix jacchus. REFERENCE 1 (bases 1 to 926) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Platyrrhine Systematics: A Simultaneous Analysis of Molecular and Morphological Data JOURNAL Am. J. Phys. Anthropol. 106, 261-281 (1998) STANDARD No information REFERENCE 2 (bases 1 to 926) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Direct Submission JOURNAL Submitted (04-JUN-1998) Vertebrate Paleontology, American Museum of Natural History, Central Park West at 79th St., New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF069982 BASE COUNT 317 a 230 c 175 g 204 t 4287 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~GCC -C-UCAG-UG |AU-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCGGCCCUGU GAGAA---UG C|CCU-C-ca --cc-a---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-aa-au- -----)---- 1261 ---------- ---------- ---g----u- ---GAGGAGC |--------- aAGUAUCA-- 1321 -AGCACGCA- -----(aaca ---------- ---------- ---------- ------)--- 1381 --UGC|---A GCUCA--AGA C|ACUUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AC AAACUUUUAG C-AAUGAAC( ---------- ----GAAA)G UUUAA-CUA| 1561 A|-GUUA-C- AC-UGA--ca auca------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -CAA-U---U UCGUcG(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -GAC-UCA-- 1981 AGUUA-AUAG A--------g ccCGGC|GUA AAGAGUGUUU --aaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------cu uaacccaccu aauaaa--gc -----|UAAC cuGUAA-CUA ----AGUC(G 2341 UAGAA)AACU CC-------G GUUA-UaguG AAA------- -----uacuc -uAC(-GAAA 2401 -)GU|g---- ----gcuuua gca-u----- ---------- ucu-gaacAC ACUAU-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 C--AAUA-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(uaac)a a---A-UUUA 2701 U-U|--C|GC C-AGAA-CAC UACAAGC(-- -AACA--)GC UUG--AAAUU CAAAGGAC-C 2761 UG|GCGGUG- CUUUACA-UC CGUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUACACC 2821 C--------- ----)CGAUA A-ACCUCACC ACAUCUAGCC au-------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -u-C---AGC CUG-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|UC-(C U-UAA)UGA- -----(uug- 3181 ca-)------ A-AGUAAGCA GAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGCA|GCC AAU------- ---------G 3841 A-C-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c au---)---- ---------- ---------- CAG-AAaacu 4021 aa-------- ------ACGA --UAACC-CC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAU-U-) U-AG-G--GG -C--CUAAG- -GUGGAUUUA 4141 G-C--AGUAA A-CCAAGA(- AUAGA-GA-- --)GCUUGAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- aCAA--GCCC 4261 AUUAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaca--u- 4381 cacac-aaaa gua------- uauuaacaa- caagc----- cacuuca-ca cugaucua-- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-GGA-U AAGUCGUAAC AUGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGACGA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.pygma 5213 bp RNA RNA 09-JUL-1998 DEFINITION Mitochondrion Callithrix pygmaea.; . ACCESSION AF0699 3 KEYWORDS . SOURCE Mitochondrion Callithrix pygmaea. ORGANISM Mitochondrion Callithrix pygmaea. REFERENCE 1 (bases 1 to 924) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Platyrrhine Systematics: A Simultaneous Analysis of Molecular and Morphological Data JOURNAL Am. J. Phys. Anthropol. 106, 261-281 (1998) STANDARD No information REFERENCE 2 (bases 1 to 924) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Direct Submission JOURNAL Submitted (04-JUN-1998) Vertebrate Paleontology, American Museum of Natural History, Central Park West at 79th St., New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF069983 BASE COUNT 316 a 215 c 179 g 214 t 4289 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~GCC -C-UCGG-UG |AU-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGACCCUGU GAGAA---UG C|CCU-Cua- --cc-a---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-ag-au- -----)---- 1261 ---------- ---------- ---g----u- ---GAGGAGC |--------- gAGUAUCA-- 1321 -AGCGCGCA- -----(uaua ---------- ---------- ---------- ------)--- 1381 --UGC|---A GCUCA--AGA C|ACUUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AC AAACCUUUAG C-AAUGAAC( ---------- ----GAAA)G UUUAA-CUA| 1561 A|-GUUA-C- AC-UGA--ca auca------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -GAC-UCG-- 1981 AGUUA-AUAG A--------g ccCGGC|GUA AAGAGUGUUU --aaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------uu uaacucacua aauaaa--gc -----|UAAC cuAUAA-CUA ----AGUC(G 2341 UAGAA)AACU CC-------U GUUA-UaguG AAA------- -----uauuc -uAC(-GAAA 2401 -)GU|g---- ----gcuuua a-uau----- ---------- ucu-gaauAC ACUAU-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 C--AAUA-AA |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(uaac)a a---A-UUUA 2701 U-U|--C|GC C-AGAA-CAC UACAAGC(-- -AACA--)GC UUG--AAACU CAAAGGAC-C 2761 UG|GCGGUG- CUUUACA-UC CGUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAUACC 2821 C--------- ----)CGAUA A-ACCUCACC ACGUCUAGCC au-------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|UC-(C U-UAA)UGA- -----(uug- 3181 ua-)------ A-AGUAAGCA GAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----gauc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG C|UGCA|GGC AAU------- ---------G 3841 A-C-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- CAG-AAaacu 4021 aa-------- ------ACGA --CAACC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-u-) U-AA-G--GG -C--CCAAG- -GUGGAUUUA 4141 G-C--AGUAA A-CCAAGA(- AUAGA-GA-- --)GCUUGAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- aCAA--GGCC 4261 AUUAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaca--u- 4381 cacac-aaaa gua------- uauuagcaa- caagc----- cacuuaa-ua cugaucua-- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-GGA-U AAGUCGUAAC AUGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGAUGA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.L.rosal 5213 bp RNA RNA 09-JUL-1998 DEFINITION Mitochondrion Leontopithecus rosalia.; . ACCESSION AF0699 9 KEYWORDS . SOURCE Mitochondrion Leontopithecus rosalia. ORGANISM Mitochondrion Leontopithecus rosalia. REFERENCE 1 (bases 1 to 925) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE and Morphological Data Platyrrhine Systematics: A Simultaneous Analysis of Molecular JOURNAL Am. J. Phys. Anthropol. 106, 261-281 (1998) STANDARD No information REFERENCE 2 (bases 1 to 925) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Direct Submission JOURNAL Submitted (04-JUN-1998) Vertebrate Paleontology, American Museum of Natural History, Central Park West at 79th St., New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF069969 BASE COUNT 326 a 226 c 171 g 202 t 4288 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~GCC -C-UCAG-UA |AG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCGACCCUGU GAAAA---UG C|CCU-Ccac --ca-a---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------- -----)---- 1261 ---------- ---------- ------aac- a-uGAGGAGC |--------- gAGUAUCA-- 1321 -AGCACGCA- -----(AACA ---------- ---------- ---------- ------)--- 1381 --UGC|---A GCUCA--AGA C|ACUUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AC AAACUUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUAA-CUA| 1561 A|-GCUA-U- AC-UGA--cu auua------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -GAC-UCA-- 1981 AGUUA-AUAG A--------g caCGGC|GUA AAGGGUGUUU --aaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------uuu uauuaacuca aauaaa--gc -----|UAAC cuAUAA-CUA ----AGUC(G 2341 UAGAA)AACC CC-------A GUUA-CaguA AAA------- -----uaaac -uAC(-GAAA 2401 -)GU|g---- ----gcuuua a-uau----- ---------- ucu-gaauAC ACUAC-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCU 2521 U--AAUA-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(uaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAA-CAC UACAAGC(-- -AACA--)GC UUG--AAACU CAAAGGAC-C 2761 UG|GCGGUG- CUUUACA-UC CGUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUACACC 2821 C--------- ----)CGAUA C-ACCUCACC ACCUCUUGCC cu-------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|UCC(U U-AAU)GAU- -----(-cg- 3181 ca-)------ A-AGUAAGCA GAA-GUGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cauc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGCA|GCC AAU------- ---------G 3841 A-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c cc---)---- ---------- ---------- CAG-AAaauu 4021 ac-------- ------ACGA --UACCC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAC-C-) U-AA-G--GG -C--CCAAG- -GUGGAUUUA 4141 G-C--AGUAA A-CCAAGA(- AUAGA-GA-- --)GCUUGAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- aCAA--GGCC 4261 AUUAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaca--c- 4381 cac-a-caaa agua------ cauuaacaa- uaaaa----u acu-aaa-aa cugguaua-- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-GGA-U AAGUCGUAAC AUGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGACAA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.geoff 5213 bp RNA RNA 09-JUL-1998 DEFINITION Mitochondrion Saguinus geoffroyi.; . ACCESSION AF0699 2 KEYWORDS . SOURCE Mitochondrion Saguinus geoffroyi. ORGANISM Mitochondrion Saguinus geoffroyi. REFERENCE 1 (bases 1 to 926) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Platyrrhine Systematics: A Simultaneous Analysis of Molecular and Morphological Data JOURNAL Am. J. Phys. Anthropol. 106, 261-281 (1998) STANDARD No information REFERENCE 2 (bases 1 to 926) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Direct Submission JOURNAL Submitted (04-JUN-1998) Vertebrate Paleontology, American Museum of Natural History, Central Park West at 79th St., New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF069972 BASE COUNT 317 a 229 c 178 g 202 t 4287 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~GCU ---UCAG-UG |AG-AC--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCAUCCCUGU GAGAA---UG C|CCU-Cua- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cca-- -----)---- 1261 ---------- ---------- ---a--aac- a-cGAGGAGC |--------- gAGUAUCA-- 1321 -AGCACGCA- -----(-UUA ---------- ---------- ---------- ------)--- 1381 --UGC|---A GCUCA--AAA C|ACUUU-GC --|------- (uuua--)-- -------GC| 1441 CACg------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AC AAACCUUUAG C-AAUGAAC( ---------- ----GAAA)G UUUAA-CUA| 1561 A|-GCCA-C- AC-UGA--ca auca------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -GAC-UCA-- 1981 AGUUA-AUAG A--------a ucCGGC|GUA AAGGGUGUUU --aaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----cuuaa acccaugcac aauaaa--gc -----|UGAC cuGUAA-CUA ----AGUC(G 2341 UAAAA)AACC UC-------A GUUA-CaguG AAA------- -----ugcac -uAC(-GAAA 2401 -)GU|g---- ----gcuuua guac------ ---------- ucu-gaauAC ACUAU-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 C--AAUA-AC |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- agc(uaac)a a---A-CUUA 2701 U-U|--C|GC C-AGAA-UAU UACAAGC(-- -AACA--)GC UUG--AAACU CAAAGGAC-C 2761 UG|GCGGUG- CUUUACA-UC CGUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUACACC 2821 C--------- ----)CGAUA A-ACCUCACC ACCUCUUGCC au-------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|UC-(C C-UAA)UGA- -----(ucg- 3181 ua-)------ A-AGUAAGCG GAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cauc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGCA|GCC AAU------- ---------G 3841 A-C-GU-GG- GA-AGA--AA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a au---)---- ---------- ---------- CAG-AGaacc 4021 au-------- ------ACGA --CAACU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAU-C-) U-AA-G--AG -U--CCAAG- -GUGGAUUUA 4141 G-C--AGUAA A-CCAAGA(- AUAGA-GA-- --)GCUUGAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- gCAA--GGCC 4261 AUUAAG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaca--u- 4381 cacau-a-aa agu-----au a-uuaacaa- uaaa-cc--- acuu-aa-ua cugauaua-- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AUGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGACAA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.oedip 5213 bp RNA RNA 09-JUL-1998 DEFINITION Mitochondrion Saguinus oedipus.; . ACCESSION AF0699 3 KEYWORDS . SOURCE Mitochondrion Saguinus oedipus. ORGANISM Mitochondrion Saguinus oedipus. REFERENCE 1 (bases 1 to 926) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE and Morphological Data Platyrrhine Systematics: A Simultaneous Analysis of Molecular JOURNAL Am. J. Phys. Anthropol. 106, 261-281 (1998) STANDARD No information REFERENCE 2 (bases 1 to 926) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Direct Submission JOURNAL Submitted (04-JUN-1998) Vertebrate Paleontology, American Museum of Natural History, Central Park West at 79th St., New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF069973 BASE COUNT 320 a 234 c 176 g 196 t 4287 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~GCU ---UCAG-UG |AG-AC--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCACCCCUGU GAGAA---UG C|CCU-Cua- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cca-- -----)---- 1261 ---------- ---------- ---a--aac- a-cGAgGAGC |--------- gAGUAUCA-- 1321 -AGCACGCA- -----(-UUA ---------- ---------- ---------- ------)--- 1381 --UGC|---A GCUCA--AAA C|ACUUU-GC --|------- (uuua--)-- -------GC| 1441 CACg------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AC AAACCUUUAG C-AAUGAAC( ---------- ----GAAA)G UUUAA-CUA| 1561 A|-GCCA-C- AC-UGA--ca acca------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUC|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -GAC-UCA-- 1981 AGUUA-AUAG A--------a ucCGGC|GUA AAGGGUGUUU --aaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----cuuaa acccauacac aauaaa--gc -----|UGAC cuGUAA-CUA ----AGUC(G 2341 UAAAA)AACC CC-------A GUUA-CaguG AAA------- -----ugcac -uAC(-GAAA 2401 -)GU|g---- ----gcuuua guac------ ---------- ucu-gaauAC ACUAU-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 C--AAUA-AC |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- agc(uaac)a a---A-CUUA 2701 U-U|--C|GC C-AGAA-UAU UACAAGC(-- -AACA--)GC UUG--AAACU CAAAGGAC-C 2761 UG|GCGGUG- CUUUACA-UC CGUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUACACC 2821 C--------- ----)CGAUA A-ACCUCACC ACCUCUUGCC au-------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|UC-(C C-UAA)UGA- -----(ucg- 3181 aa-)------ A-AGUAAGCG GAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cauc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGCA|GCC AAU------- ---------G 3841 A-C-GU-GG- GA-AGA--AA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a au---)---- ---------- ---------- CAG-AGaacc 4021 au-------- ------ACGA --CAACC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAU-C-) U-AA-G--AG -U--CCAAG- -GUGGAUUUA 4141 G-C--AGUAA A-CCAAGA(- AUAGA-GA-- --)GCUUGAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- gCAA--GGCC 4261 AUUAAG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaca--u- 4381 cacau-a-aa agu------a cauuaacaa- uaaa-cc--- acuuaa--ua cugauaua-- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AUGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGACAA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.palli 5213 bp RNA RNA 09-JUL-1998 DEFINITION Mitochondrion Alouatta palliata.; . ACCESSION AF0699 4 KEYWORDS . SOURCE Mitochondrion Alouatta palliata. ORGANISM Mitochondrion Alouatta palliata. REFERENCE 1 (bases 1 to 926) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Platyrrhine Systematics: A Simultaneous Analysis of Molecular and Morphological Data JOURNAL Am. J. Phys. Anthropol. 106, 261-281 (1998) STANDARD No information REFERENCE 2 (bases 1 to 926) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Direct Submission JOURNAL Submitted (04-JUN-1998) Vertebrate Paleontology, American Museum of Natural History, Central Park West at 79th St., New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF069964 BASE COUNT 320 a 216 c 173 g 217 t 4287 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~GCU -C-UCAG-UA |AA-AU--UA -CGC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCAACCCUGU GAGAA---UG C|CCU-Cuag --gu-u---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-auauu- -----)---- 1261 ---------- ---------- ---g--aca- u--GAGGAGC |--------- gAGCAUCA-- 1321 -AGCACGC-- -----(GCAC ---------- ---------- ---------- ------)--- 1381 ---GC|---A GCUCA--AAA C|GCUUU-GC --|------- (-uua--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG AAa----C-A 1501 GCA|GUG-AU AAACCUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUAA-CUA| 1561 A|-GUUA-U- ACUGAu--ca uua------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCCGCC-GC -GGC-CA)-U ACGAUU|--- -GAC-UCA-- 1981 AGUUA-AUAG A--------g uaCGGC|GUA AAGAGUGUUU --aaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- uuauacccuc aauaaa--gc -----|UAAU cuGUAA-CUA ----AGUC(G 2341 UAAAA)AACU CU-------G GUUA-CaguA AAA------- -----uauuc -uAC(-GAAA 2401 -)GU|g---- ----gcuuua auucu----- ---------- ccu-gaauAC ACUAA-AGCU 2461 A-AGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 C--AAUA-AC |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(caac)a a---A-UUUA 2701 U-U|--C|GC C-AGAA-CAC UACAAGC(-- -AACA--)GC UUG--AAACU CAAAGGAC-C 2761 UG|GCGGUG- CUUUACA-UC CGUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAUACC 2821 C--------- ----)CGAUA A-ACCUUACC ACCUCUUGCC c--------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|UC-(C C-UAA)AGA- -----(ucg- 3181 ca-)------ A-AGUAAGCA GAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uauc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGCA|GCC AAU------- ---------G 3841 A-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a au---)---- ---------- ---------- CAG-AAaacu 4021 ac-------- ------ACGA --CAACC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAU-C-) U-AA-A--GG -C--CCAAG- -GUGGAUUUA 4141 G-C--AGUAA A-UCAAGA(- AUAGA-GA-- --)GCUUGAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- aCAA--GGCC 4261 AUUAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaca--u- 4381 cau---acaa aag-----ua uuuua-aua- acua-aau-- cac-uacaca cugauaua-- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AUGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGGUAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.senic 5213 bp RNA RNA 09-JUL-1998 DEFINITION Mitochondrion Alouatta seniculus.; . ACCESSION AF0699 5 KEYWORDS . SOURCE Mitochondrion Alouatta seniculus. ORGANISM Mitochondrion Alouatta seniculus. REFERENCE 1 (bases 1 to 926) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE and Morphological Data Platyrrhine Systematics: A Simultaneous Analysis of Molecular JOURNAL Am. J. Phys. Anthropol. 106, 261-281 (1998) STANDARD No information REFERENCE 2 (bases 1 to 926) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Direct Submission JOURNAL Submitted (04-JUN-1998) Vertebrate Paleontology, American Museum of Natural History, Central Park West at 79th St., New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF069975 BASE COUNT 323 a 213 c 172 g 218 t 4287 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~GCU -C-UCAC-UA |AA-AU--AA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCAACCCUGU GAAAA---UG C|CCU-Cuag --au-u---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-auaa-- -----)---- 1261 ---------- ---------- ---u--aac- a-uGAGGAGC |--------- gAGCAUCA-- 1321 -AGCACGC-- -----(ACAC ---------- ---------- ---------- ------)--- 1381 ---GC|---A GCUCA--AAA C|GCUUU-GC --|------- (-uua--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG AAa----C-A 1501 GCA|GUG-AU AAACCUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUAA-CUA| 1561 A|-GUUA-U- AC-UGA--uu auua------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -GAC-UCA-- 1981 AGUUA-AUGG A--------g uaCGGC|GUA AAGAGUGUUU --aaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- uuauaucuuc aauaaa--gc -----|UAAC cuAUAA-CUA ----AGUC(G 2341 UAAAA)AACC CU-------G GUUA-UgguA AAA------- -----uauuc -uAC(-GAAA 2401 -)GU|g---- ----gcuuua a-uau----- ---------- ccu-gaauAC ACUAA-AGCU 2461 A-AGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 C--AAUA-AC |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(caac)a a---A-UUUA 2701 U-U|--C|GC C-AGAA-CAC UACAAGC(-- -AACA--)GC UUG--AAAUU CAAAGGAC-C 2761 UG|GCGGUG- CUUUACA-UC CGUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUACACC 2821 C--------- ----)CGAUA G-ACCUUACC ACCUCUUGCC cc-------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|UC-(C C-UAA)AGA- -----(ucg- 3181 ca-)------ A-AGUAAGCA GAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uauc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGCA|GCC AAU------- ---------G 3841 G-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a au---)---- ---------- ---------- CAG-AAaauu 4021 ac-------- ------ACGA --CAACC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAU-C-) U-AA-A--GG -U--CCAAG- -GUGGAUUUA 4141 G-C--AGUAA A-UCAAGA(- AUAGA-GA-- --)GCUUGAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- aCAA--GGCC 4261 AUUAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaca--u- 4381 cac-a-caaa agu-----au cuuag-uaa- cuaaa-uc-- acu-aca-ug uugguaua-- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AUGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGGUAA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.trivi 5213 bp RNA RNA 09-JUL-1998 DEFINITION Mitochondrion Aotus trivirgatus.; . ACCESSION AF0699 7 KEYWORDS . SOURCE Mitochondrion Aotus trivirgatus. ORGANISM Mitochondrion Aotus trivirgatus. REFERENCE 1 (bases 1 to 929) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Platyrrhine Systematics: A Simultaneous Analysis of Molecular and Morphological Data JOURNAL Am. J. Phys. Anthropol. 106, 261-281 (1998) STANDARD No information REFERENCE 2 (bases 1 to 929) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Direct Submission JOURNAL Submitted (04-JUN-1998) Vertebrate Paleontology, American Museum of Natural History, Central Park West at 79th St., New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF069977 BASE COUNT 322 a 217 c 174 g 216 t 4284 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~GCU -C-UCAG-UG |AA-AU--AA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|u aCAAUCCUGU GAAAA---UG C|CCU-Cuag --aa-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-uauua- -----)---- 1261 ---------- ---------- ---u--aac- a-uGAGGAGC |--------- gAGUAUCA-- 1321 -AGCACGCA- -----(caca ---------- ---------- ---------- ------)--- 1381 --UGC|---A GCUCA--AAA C|ACUUU-GC --|------- (-uua--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AC AAACUUUUAG C-AAUGAAC( ---------- ----GAAA)G UUCAA-CUA| 1561 A|-GUUA-C- AC-UAA--uc auaa------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -GAC-UCA-- 1981 AGUUA-AUAG A--------g uuCGGC|GUA AUGAGUGUUU --aaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -ucuaccccc aauaaa--gc -----|UAAC cuAUAA-UUA ----AGUC(G 2341 UAGAA)AACU CC-------A GUUA-UaguA AAA------- -----uacuu -uAC(-GAAA 2401 -)GU|g---- ----gcuuua auac------ ---------- ucu-gaauAC ACUAU-AGCU 2461 A-AGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CUU 2521 C--AAUA-AC |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(uaac)a a---A-GUUC 2701 U-U|--C|GC C-AGAA-UAC UACAAGC(-- -CACA--)GC UUG--AAACU CAAAGGGC-C 2761 UG|GCGGUG- CUUUACA-UC CGUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUACACC 2821 C--------- ----)CGAUA A-ACCUUACC ACCUCUUGCC au-------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUG-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|UC-(C U-UAA)AGA- -----(ucg- 3181 ca-)------ G-AGUAaGCA GAA-GCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cauc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGCA|GCC AAU------- ---------G 3841 A-A-GU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a uc---)---- ---------- ---------- UAG-AAaacc 4021 acac------ ------ACGA --UAGCC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAU-C-) U-AA-A--GG -C--CCAAG- -GUGGAUUUA 4141 G-C--AGUAA A-UCAAGA(- AUAGA-GA-- --)GCUUGAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- aCAA--GGCC 4261 AUUAAG-CA- CGCACACG-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaca--u- 4381 cauau-agaa gua------- -aacu-agc- aguaauc--- uacuacauac ugauaua--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-GGA-U AAGUCGUAAC AUGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGACGA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.Atel.sp 5213 bp RNA RNA 09-JUL-1998 DEFINITION Mitochondrion Ateles sp.; . ACCESSION AF0699 8 KEYWORDS . SOURCE Mitochondrion Ateles sp. ORGANISM Mitochondrion Ateles sp. REFERENCE 1 (bases 1 to 927) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Platyrrhine Systematics: A Simultaneous Analysis of Molecular and Morphological Data JOURNAL Am. J. Phys. Anthropol. 106, 261-281 (1998) STANDARD No information REFERENCE 2 (bases 1 to 927) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Direct Submission JOURNAL Submitted (04-JUN-1998) Vertebrate Paleontology, American Museum of Natural History, Central Park West at 79th St., New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF069978 BASE COUNT 328 a 213 c 171 g 215 t 4286 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~GCU -C-UCAG-UA |AA-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCAACCCUGU GAAAA---UG C|CCU-C-aa --au-a---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-guua-- -----)---- 1261 ---------- ---------- ---u--aau- a-uGAGGAGC |--------- gAGUAUCA-- 1321 -AGCACGCA- -----(uaca ---------- ---------- ---------- ------)--- 1381 --UGC|---A GCUCA--AAA C|ACUUU-GC --|------- (-uua--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AU AAACCUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUAA-CUA| 1561 A|-GUUA-U- AC-UGA--uc auca------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -AAC-UCA-- 1981 AGUUA-AUAG G--------g caCGGC|GUA AAGAGUGUUU --aaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- acauacuuca aauaaa--gc -----|UAAC cuAUAA-CUA ----AAUU(G 2341 UAAAA)AAUC CU-------G GUUA-CaguA AAA------- -----uacuc -uAC(-GAAA 2401 -)GU|g---- ----gcuuua auaca----- ---------- -cu-gaauAC ACCAU-AGCU 2461 A-AGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 C--AAUA-AC |CU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aua(uaac)a a---G-AUUA 2701 U-U|--C|GC C-AGAA-CAC UACAAGC(-- -AACA--)GC UUG--AAACU CAAAGGAC-C 2761 UG|GCGGUG- CUUUACA-UC CGUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUACACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUCUUGCC cc-------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UU- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|UC-(C U-UAA)AGA- -----(ucg- 3181 ua-)------ A-AGUAAGCA GGA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cauc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGCA|GCC AAU------- ---------G 3841 G-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a au---)---- ---------- ---------- CAG-AAaauu 4021 uau------- ------ACGA --UGACC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAU-U-) U-AA-A--GG -C--CCAAG- -GUGGAUCUA 4141 G-C--AGUAA A-UCAAGA(- AUAGA-Ga-- --)GCUUGAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- gCAA--GGCC 4261 AUUAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaacau--- 4381 cacac-aaaa gua------- cauuaauaa- uaaa-c---- uacuauacgc uaaugua--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-GGA-U AAGUCGUAAC AUGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGAUGA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.arach 5212 bp RNA RNA 09-JUL-1998 DEFINITION Mitochondrion Brachyteles arachnoides.; . ACCESSION AF0699 9 KEYWORDS . SOURCE Mitochondrion Brachyteles arachnoides. ORGANISM Mitochondrion Brachyteles arachnoides. REFERENCE 1 (bases 1 to 926) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Platyrrhine Systematics: A Simultaneous Analysis of Molecular and Morphological Data JOURNAL Am. J. Phys. Anthropol. 106, 261-281 (1998) STANDARD No information REFERENCE 2 (bases 1 to 926) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Direct Submission JOURNAL Submitted (04-JUN-1998) Vertebrate Paleontology, American Museum of Natural History, Central Park West at 79th St., New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5212) Corresponding GenBank entry: AF069979 BASE COUNT 329 a 216 c 173 g 208 t 4286 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- -~~~~~~~~( 661 ~~~~)~~~~~ |~~~~~~~~~ ~~~~~~GCU- C-UCAG-UA| AA-AU--UA- CAC-A-UGC- 721 AAGc------ ----|----- ------(--- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------aucc )--------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 -------|-a CAACCCUGUG AAAA---UGC |CCU-C-aa- -ac-c----- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- -(-auua--- ----)----- 1261 ---------- ---------- --u--aac-a -uGAGGAGC| ---------g AGUAUCA--- 1321 AGCACGCA-- ----(uaca- ---------- ---------- ---------- -----)---- 1381 -UGC|---AG CUCA--AAAC |ACUUU-GC- -|-------( -uca--)--- ------GC|C 1441 ACG------- ---------- ---------- |-CCCC--(C ACG-)--GGA Aa----C-AG 1501 CA|GUG-ACA AACCUUUAGC -AAUAAAC(- ---------- ---GAAA)GU UUAA-CUA|A 1561 |-GUUA-U-A C-UGA--ccg uca------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------G AGUU|-GGU- 1921 CAA-U---UU CGU-G(-CCA GCCACC-GC- GGC-CA)-UA CGAUU|---- AAC-UCA--A 1981 GUUA-AUAGA --------gc aCGGC|GUAA AGAGUGUUU- -aaga----- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- -------|-- ---------- 2281 ---------u aauaauuuaa auaaa--gc- ----|CAAUc uAUAA-CUA- ---AGUC(GU 2341 AGAA)AACAC U-------GG UUA-UgguAA GA-------- ----uaucc- uAC(-GAAA- 2401 )GU|g----- ---gcuuuag ca-u------ ---------c cu-gaauACA CUAU-AGCUA 2461 -AGG---CAC AAACUGGG(A UUAGAUAC)C CCA-CUAU|- GCUU-AGC-C CUAAA-CCUA 2521 --AAUA-AC| UU|------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a ac(uaac)aa ---A-AUUAU 2701 -U|--C|GCC -AGAA-CACU ACAAGC(--- AACA--)GCU UG--AAACUC AAAGGAC-CU 2761 G|GCGGUG-C UUUACA-UCC GUCUAGA|GG AGCCUGU-U| CUAUA--AUC G(AUACACCC 2821 ---------- ---)CGAUAC -ACCUUACCA CCUCUAGCCc c--------- ---------( 2881 ---------- --)------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- --C---AGCC UG-UA|UA-| 3121 CC|-GC--C| A------UCU U-CA|G-CAA AC-|UC-(CU -UAA)AGA-- ----(uug-u 3181 g-)------A -AGUAACCAG GA-GUAU--- ---------- ---------- ----(----- 3241 -)<------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ----->---- --|------- ---------- ---------( ------)--- ----uauc-- 3781 --------AU AAAAA-CGUU -AGGUCAAGG |UGCA|GCCA AU-------- --------GA 3841 -G-GU-GG-G A-AGA--AA- UGGGCUACAU U--UUCUA-- ---------- ---------- 3901 ---<------ ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---->(--aa u---)----- ---------- ---------U AG-AAaaaca 4021 c--------- -----ACGA- -UAGCC-UUU -A(------- ---------- ---------- 4081 ---------- ---------U GAAAU-C-)U -AA-A--GG- C--CCAAG-- GUGGAUUUAG 4141 -C--AGUAAA -UCAAGA(-A UAGA-GA--- -)GCUUGAUU -GAA------ ---------- 4201 ---------- ---------- ---------- ---------- ---------a CAA--GGCCA 4261 UUAAG-CA-C GCACACA-C- CGCCCGUCAC -CCU--CCUC ---------- ---------- 4321 ---------- ---------- ---------- ---------- --------<- aaaca--u-c 4381 acac-aaaag ua-------c auuaacaa-c aaa--a---u acuaua-uac uggugua--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ->-------- ---------- ---------- ---------- 4561 ---------- ---------G AGG-GGA-UA AGUCGUAACA UGGUAAG-CG UA-CU(GGA- 4621 A)AGU-GC-G CUUGGAUGAA U-------|- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- -------||| || // LOCUS mt.L.lagot 5213 bp RNA RNA 09-JUL-1998 DEFINITION Mitochondrion Lagothrix lagotricha.; . ACCESSION AF0699 8 KEYWORDS . SOURCE Mitochondrion Lagothrix lagotricha. ORGANISM Mitochondrion Lagothrix lagotricha. REFERENCE 1 (bases 1 to 925) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE and Morphological Data Platyrrhine Systematics: A Simultaneous Analysis of Molecular JOURNAL Am. J. Phys. Anthropol. 106, 261-281 (1998) STANDARD No information REFERENCE 2 (bases 1 to 925) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Direct Submission JOURNAL Submitted (04-JUN-1998) Vertebrate Paleontology, American Museum of Natural History, Central Park West at 79th St., New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF069968 BASE COUNT 329 a 213 c 171 g 212 t 4288 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~GCU -C-UCAG-UA |AA-AU--AA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCAGUCCUGU GAAAA---UG C|CCU-C-aa --ac-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-accg-- -----)---- 1261 ---------- ---------- ---u--aac- a-uGAGGAGC |--------- gAGUAUCA-- 1321 -AGCACGCA- -----(CACA ---------- ---------- ---------- ------)--- 1381 --UGC|---A GCUCA--AAA C|ACUUU-GC --|------- (-uca--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG AAa----C-A 1501 GCA|GUG-AC AAACCUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUAA-CUA| 1561 A|-GUUA-U- AC-UGA--cc auua------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCCACC-GC -GGG-CA)-U ACGAUU|--- -AAC-UCA-- 1981 AGUUA-AUAA A--------a caCGGC|GUA AAGAGUGUUU --aaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -auauucuua aauaaa--gc -----|UAAC cuGUAA-CUA ----AGUC(G 2341 UAAAA)AACA CU-------G GUUA-UaguG AAA------- -----uauuc -uAC(-GAAA 2401 -)GU|g---- ----gcuuua guac------ ---------- ccu-gaauAC ACCAU-AGCU 2461 A-AGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 C--AAUA-AC |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(uaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAA-CAC UACAAGC(-- -AAUA--)GC UUG--AAACU CAAAGGAC-C 2761 UG|GCGGUG- CUUUACA-UC CGUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAUACC 2821 C--------- ----)CGAUA A-ACCUUACC ACCUCUUGCC au-------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|UC-(C U-UAA)AGA- -----(ucg- 3181 ua-)------ A-AGUAAGCA GGA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uauc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGCA|GCC AAU------- ---------G 3841 A-A-GU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a au---)---- ---------- ---------- UAG-AAgacu 4021 au-------- ------ACGA --UAGCC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAU-C-) U-AA-A--GG -C--CCAAG- -GUGGAUUUA 4141 G-C--AGUAA A-UCAAGA(- AUAGA-GA-- --)GCUUGAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- aCAA--GGCC 4261 AUUAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaacau--- 4381 cacac---ag aagu-----a cauugauua- caa------a cuacuauaca cugauaua-- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-GGA-U AAGUCGUAAC AUGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGACGA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.moloc 5213 bp RNA RNA 09-JUL-1998 DEFINITION Mitochondrion Callicebus moloch.; . ACCESSION AF0699 0 KEYWORDS . SOURCE Mitochondrion Callicebus moloch. ORGANISM Mitochondrion Callicebus moloch. REFERENCE 1 (bases 1 to 925) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Platyrrhine Systematics: A Simultaneous Analysis of Molecular and Morphological Data JOURNAL Am. J. Phys. Anthropol. 106, 261-281 (1998) STANDARD No information REFERENCE 2 (bases 1 to 925) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Direct Submission JOURNAL Submitted (04-JUN-1998) Vertebrate Paleontology, American Museum of Natural History, Central Park West at 79th St., New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF069980 BASE COUNT 329 a 225 c 168 g 203 t 4288 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~GCC -C-UCAG-UG |AA-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCAAUCCUGU GAAAA---UG C|CCU-Ccag --gc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-auca-- -----)---- 1261 ---------- ---------- ---a--aac- a-aGAGGAGC |--------- aAGUAUCA-- 1321 -AGCACGC-- -----(acaa ---------- ---------- ---------- ------)--- 1381 ---GC|---A GCUCA--AAA C|ACUUU-GG --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAa----C-A 1501 GCA|GUG-AC AAACCUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUAA-CUA| 1561 A|-GUUA-C- AC-UGA--cc acca------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUC|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -GAC-UCA-- 1981 AGUUA-AUAG A--------g cuCGGC|GUA AAGAGUGUUU --aaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -uuuacucuc aauaaa--gc -----|UAAU cuAUAA-CUA ----AGUU(G 2341 UGGAA)AACC CC-------A GUUA-UaguA AAA------- -----uaccc -uAC(-GAAA 2401 -)GU|g---- ----gcuuua a-uau----- ---------- acu-gaacAC ACUAU-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 C--AAUA-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a auu(aaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAA-CAC UACAAGC(-- -CACA--)GC UUG--AAACU CAAAGGAC-C 2761 UG|GCGGUG- CUUUAUA-UC CUUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA G-ACCUCACC ACCUCUUGCU cu-------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|UC-(C C-UAA)AGA- -----(uug- 3181 ca-)------ U-AGUAAGCA GAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----gacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGCA|GCC AAU------- ---------G 3841 A-A-GU-GG- -a-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ac---)---- ---------- ---------- CAG-AAaacc 4021 ac-------- ------ACGA --CAGCC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAU-C-) U-AA-A--GU -C--CCGAG- -GUGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- AUAGA-GA-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- aCAA--GGCC 4261 AUUAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaca--uc 4381 acaca-aaua gug------- cauuaacaa- caaa--c--- uacuaua-aa cugauaua-- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-GGA-U AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGAUAA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.apell 5213 bp RNA RNA 09-JUL-1998 DEFINITION Mitochondrion Cebus apella.; . ACCESSION AF0699 5 KEYWORDS . SOURCE Mitochondrion Cebus apella. ORGANISM Mitochondrion Cebus apella. REFERENCE 1 (bases 1 to 932) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE and Morphological Data Platyrrhine Systematics: A Simultaneous Analysis of Molecular JOURNAL Am. J. Phys. Anthropol. 106, 261-281 (1998) STANDARD No information REFERENCE 2 (bases 1 to 932) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Direct Submission JOURNAL Submitted (04-JUN-1998) Vertebrate Paleontology, American Museum of Natural History, Central Park West at 79th St., New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF069965 BASE COUNT 321 a 231 c 175 g 205 t 4281 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~GCC -C-UCAG-UG |AG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCGUCCUGU GAGAA---UG C|CCC-Cuag --aa-a---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-acca-- -----)---- 1261 ---------- ---------- ---a--aac- a-uGGGGAGC |--------- gAGUAUCA-- 1321 -AGCACGCA- -----(UACA ---------- ---------- ---------- ------)--- 1381 --UGC|---A GCUCA--AAA C|ACUUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAa----C-A 1501 GCA|GUG-AC AAACUUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUAA-CUA| 1561 A|-GCCA-C- AC-UGA--ua aua------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -AAC-UCG-- 1981 AGUUA-AUAA A--------a ccCGGC|GUA AAGAGUGUUU --aaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ucccacccuc aauaaa--gc -----|UAAC cuAUAA-CUA ----AGUU(G 2341 UAGAA)AACU CC-------G GUUA-UaguG AAA------- -----uacuc -uAC(-GAAA 2401 -)GU|g---- ----gcuuua augcu----- ---------- ccu-gaauAC ACUAU-AGCU 2461 A-AGA---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCC 2521 C--AAUA-AC |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- cac(caac)a a---A-ACUA 2701 U-U|--C|GC C-AGAA-CAC UACAAGC(-- -AAUA--)GC UUA--AAACU CAAAGGAC-C 2761 UG|GCGGUG- CUUUAUA-UC CGUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAUACC 2821 C--------- ----)CGAUA G-ACCUUACC ACCUCUUGCC cu-------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-GC--C |A------UC CU-CA|G-CA AAC-|UC-(C C-UAA)AGA- -----(ucg- 3181 ua-)------ A-AGUAAGCA GAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGCA|GCC AAU------- ---------G 3841 A-A-GU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a cc---)---- ---------- ---------- UAG-AAaaac 4021 uac------- ------ACGA --CAGCC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAU-U-) U-AA-A--GG -C--CCAAG- -GUGGAUUUA 4141 G-C--AGUAA A-UCAAGA(- AUAGA-GA-- --)GCUUGAC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- gCAA--GGCC 4261 AUUAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaccac-c- 4381 auaua-gaga agu-----au auuaacaau- uuaa-gcc-- acuu--caua uugaugua-- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-GGA-U AAGUCGUAAC ACGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGACGA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.sciur 5213 bp RNA RNA 09-JUL-1998 DEFINITION Mitochondrion Saimiri sciureus.; . ACCESSION AF0699 4 KEYWORDS . SOURCE Mitochondrion Saimiri sciureus. ORGANISM Mitochondrion Saimiri sciureus. REFERENCE 1 (bases 1 to 925) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Platyrrhine Systematics: A Simultaneous Analysis of Molecular and Morphological Data JOURNAL Am. J. Phys. Anthropol. 106, 261-281 (1998) STANDARD No information REFERENCE 2 (bases 1 to 925) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Direct Submission JOURNAL Submitted (04-JUN-1998) Vertebrate Paleontology, American Museum of Natural History, Central Park West at 79th St., New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF069974 BASE COUNT 318 a 231 c 178 g 198 t 4288 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~GCU ---UCAG-CG |AG-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCAGCCCUGU GAAAA---UG C|CCU-Cuag --aa-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-gcca-- -----)---- 1261 ---------- ---------- ---g--aac- a-uGAGGAGU |--------- gAGCAUCA-- 1321 -AGCACGCA- -----(CAUA ---------- ---------- ---------- ------)--- 1381 --UGC|---A GCUCA--AGA C|GCUUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AC AAACUUUUAG C-AAUGAAC( ---------- ----GAAA)G UUCAA-CUA| 1561 A|-GCUA-C- GC-UGA--uu auca------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUC|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -GAC-UCA-- 1981 AGUUA-AUAA A--------g ccCGGC|GUA AAGAGUGUUU --aaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -uuucacguc aauaaa--gc -----|UGAC cuAUAA-CCA ----AGUU(G 2341 UAAAA)AACC CC-------G GUUA-CaguA AAA------- -----uaccc -uAC(-GAAA 2401 -)GU|g---- ----gcuuua a-uaa----- ---------- ccu-gaauAC ACUAU-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 U--AAUA-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uaa(caac)a a---A-AUUA 2701 U-U|--C|GC C-AGAA-CAC UACAAGC(-- -AACA--)GC UUG--AAACU CAAAGGAC-C 2761 UG|GCGGUG- CUUUACA-UC CGUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUUACC ACCUCUUGCC cc-------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-GC--C |A------CC UU-CA|G-CA AAC-|UC-(C C-UAA)AGA- -----(ucg- 3181 ca-)------ A-AGUAAGCA AGA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cauc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGCA|GCC UAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ac---)---- ---------- ---------- UAG-AAaauu 4021 ac-------- ------ACGA --AACCC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAC-C-) U-AA-G--GG -U--ACAAG- -GUGGAUUUA 4141 G-C--AGUAA A-CCAAGA(- AUAGA-GA-- --)GCUUGAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- gCAA--GGCC 4261 AUUAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aacca--u- 4381 cac-a-c-aa agu------a cauuaacaac uaag-cc--- acuaaa--ca cugaugua-- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-GGA-U AAGUCGUAAC AUGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGACUA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.pithe 5213 bp RNA RNA 09-JUL-1998 DEFINITION Mitochondrion Pithecia pithecia.; . ACCESSION AF0699 1 KEYWORDS . SOURCE Mitochondrion Pithecia pithecia. ORGANISM Mitochondrion Pithecia pithecia. REFERENCE 1 (bases 1 to 923) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Platyrrhine Systematics: A Simultaneous Analysis of Molecular and Morphological Data JOURNAL Am. J. Phys. Anthropol. 106, 261-281 (1998) STANDARD No information REFERENCE 2 (bases 1 to 923) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Direct Submission JOURNAL Submitted (04-JUN-1998) Vertebrate Paleontology, American Museum of Natural History, Central Park West at 79th St., New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF069971 BASE COUNT 326 a 217 c 170 g 210 t 4290 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~GCU -C-UCAG-UG |AG-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCAGCCCUGU GAGAA---UG C|CCU-Cuac --aa-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-caua-- -----)---- 1261 ---------- ---------- ---u--aac- a-uGAGGAGC |--------- uAGUAUCA-- 1321 -AGCACGC-- -----(ACAU ---------- ---------- ---------- ------)--- 1381 ---GC|---A GCUCA--AAA C|ACUUU-GG --|------- (-uua--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AC AAAUUUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUAA-CUA| 1561 A|-GUUA-C- AC-UGA--uu aaca------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -AAC-UCA-- 1981 AGCUA-AUAG A--------c cuCGGC|GUA AAGAGUGUUU --aaaa---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -cuacaaccc aauaaa--gc -----|UGAC ucGUAA-CUA ----AGUU(G 2341 UAAAA)AACC AC-------A GUUA-CgguA AAA------- -----uauac -uAC(-GAAA 2401 -)GU|g---- ----gcuuua gca-u----- ---------- ccu-gaauAC ACUAU-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAC 2521 C--AAUA-GC |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uac(caac)a a---A-ACUA 2701 U-U|--C|GC C-AGAA-CAC UACAAGC(-- -AACA--)GC UUG--AAAUU CAAAGGAC-C 2761 UG|GCGGUG- CUUUAUA-UC CUUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUUACC ACCUCUUGCC au-------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|UC-(U A-UAA)UGA- -----(cag- 3181 ua-)------ A-AGUAAGCA CAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aguc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGCA|GCC AAU------- ---------G 3841 A-G-AU-GG- -g-AGA--AA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ac---)---- ---------- ---------- UAG-AGaaca 4021 ac-------- ------ACGA --UAGUC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAC-U-) U-AA-A--AA -C--CAAAG- -GUGGAUUUA 4141 G-C--AGUAA A-UCGAGA(- AUAGA-GA-- --)GCUCGAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- aCAA--GGCC 4261 AUUAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaca--u- 4381 cau----aca aga----aua ccuuaauua- uaaauc---- ucu-aca-ca cugauaua-- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-GGA-U AAGUCGUAAC AUGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGAUGA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.satan 5213 bp RNA RNA 09-JUL-1998 DEFINITION Mitochondrion Chiropotes satanas.; . ACCESSION AF0699 6 KEYWORDS . SOURCE Mitochondrion Chiropotes satanas. ORGANISM Mitochondrion Chiropotes satanas. REFERENCE 1 (bases 1 to 922) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Platyrrhine Systematics: A Simultaneous Analysis of Molecular and Morphological Data JOURNAL Am. J. Phys. Anthropol. 106, 261-281 (1998) STANDARD No information REFERENCE 2 (bases 1 to 922) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Direct Submission JOURNAL Submitted (04-JUN-1998) Vertebrate Paleontology, American Museum of Natural History, Central Park West at 79th St., New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF069966 BASE COUNT 321 a 218 c 171 g 212 t 4291 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~GCU ---UCAG-UG |AA-AU--UA -CAC-A-UGC 721 -AUGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCAACCCUGU GAGAA---UG C|CCU-Cuag --aa-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-caca-- -----)---- 1261 ---------- ---------- ---u--aac- a-uGAGGAGC |--------- gAGUAUCA-- 1321 -AGCACGC-- -----(ACAC ---------- ---------- ---------- ------)--- 1381 ---GC|---A GCUCA--AAA C|ACUUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGa----C-A 1501 GCA|GUG-AC AAAUUUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUAA-CUA| 1561 A|-GUUA-C- AC-UGA--cc uaca------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -AAC-UCA-- 1981 AGCUA-AUAG A--------c cuCGGC|GUA AAGAGUGUUU --aagu---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- uuauaauucu aauaaa--gc -----|GGAC ucGUAA-CUA ----AGUU(G 2341 UAAAA)AACC CC-------A GUUA-UgguA AAA------- -----uacuc -uAC(-GAAA 2401 -)GU|g---- ----gcuuua ggac------ ---------- ccu-gaacAC ACUAU-AGCU 2461 A-AGA---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCC 2521 C--AAUA-GU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uac(caac)a a---A-ACUA 2701 U-U|--C|GC C-GGAA-CAC UACAAGC(-- -AACA--)GC UUG--AAAUU CAAAGGAC-C 2761 UG|GCGGUG- CUUUAUA-UC CUUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUUACC ACCUCUUGCC cu-------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|UC-(U A-UAA)CGA- -----(uaa- 3181 ca-)------ A-AGUAAGCA CAA-GUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aauc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGCA|GCC AAU------- ---------G 3841 A-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a uc---)---- ---------- ---------- UAG-AAaaca 4021 -ac------- ------GCGA --UAGUC-UU U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAU-C-) U-AA-A--GA -C--CUAAG- -GUGGAUUUA 4141 G-C--AGUAA A-UCAAGA(- AUAGA-GA-- --)GCUUGAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- aCAA--GGCC 4261 AUUAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaca--c- 4381 ca-----cau aaa----aua cuuuaacaa- uaaa-uc--- uuug--caca cugguaua-- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-GGA-U AAGUCGUAAC AUGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAAGA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (20)-Strep 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.L.catta 5213 bp RNA RNA 15-DEC-1997 DEFINITION Mitochondrion Lemur catta.; . ACCESSION AF0380 3 KEYWORDS . SOURCE Mitochondrion Lemur catta. ORGANISM Mitochondrion Lemur catta. REFERENCE 1 (bases 1 to 1022) AUTHORS Springer,M.S. TITLE marsupial radiations in relation to the Cretaceous-Tertiary boundary Molecular clocks and the timing of the placental and JOURNAL J. Mammal. Evol. 4 (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1022) AUTHORS Springer,M.S. TITLE Direct Submission JOURNAL Submitted (09-DEC-1997) Biology, University of California, 1354 Spieth, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038013 BASE COUNT 345 a 225 c 161 g 223 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uauAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUA-UUAGUU -U-ACAG-UA |AG-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------aac c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUCCCAGU GAGAA---UG C|CCU-Ccaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-ccc-u- -----)---- 1261 ---------- ---------- ---g--auu- a-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACACC- -----(AAUA ---------- ---------- ---------- ------)--- 1381 --GGU|---A GCUCA--CCA C|ACCUU-GC --|------- (-uaa--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUa----C-A 1501 GCA|GUG-AU uGAACUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCUA-U- AC-UGA--ca cuua------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUAU U--------u ccCGGC|GUA AAGUGUGUUU --aaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -uuuauauaa a-uaaa--gu -----|UAAU uuUUAU-CCA ----AGCC(G 2341 UAAAA)CGCC CC-------A GCUA-AaacA AAA------- ----cuaacc -uAC(-GAAA 2401 -)GU|g---- ----acuuua a-uac----- ---------- ucu-gaagAC ACGAC-AACU 2461 A-AGA---uC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CCU 2521 A--AGUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- a-c(aaac)a a---A-AUUA 2701 C-U|--C|GC C-AGAG-CAC UACAAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUCUUGCU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- --------aa uu-C---AAC UUA-UA|UA- 3121 |CC|-GC--C |A------UC CC-CA|G-CA AAC-|CCU(- A-UUA)AGG- -----(ccc- 3181 ca-)------ A-AGUAAGCA AAA-ACAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----auac- 3781 ---------A UAAAGA-CGU U-AGGUCAAG G|UGUA|GUC AAU------- ---------G 3841 A-A-GU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au au---)---- ---------- ---------- UAG-AAcaac 4021 ------accc ca----ACAG --AAGCC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-A--AG -C--CAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- AUAGA-GA-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aauca-cc- 4381 aau---uauu aau-----uc acuaa-uuc- uacu-aa--- acu------c uaaacaa--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAAUA UUC------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (20)-Tarsi 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.T.syric 5213 bp RNA RNA 09-JUL-1998 DEFINITION Mitochondrion Tarsius syrichta.; . ACCESSION AF0699 6 KEYWORDS . SOURCE Mitochondrion Tarsius syrichta. ORGANISM Mitochondrion Tarsius syrichta. REFERENCE 1 (bases 1 to 931) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Platyrrhine Systematics: A Simultaneous Analysis of Molecular and Morphological Data JOURNAL Am. J. Phys. Anthropol. 106, 261-281 (1998) STANDARD No information REFERENCE 2 (bases 1 to 931) AUTHORS Horovitz,I., Zardoya,R. and Meyer,A. TITLE Direct Submission JOURNAL Submitted (04-JUN-1998) Vertebrate Paleontology, American Museum of Natural History, Central Park West at 79th St., New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF069976 BASE COUNT 338 a 212 c 161 g 220 t 4282 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~GUU -U-CUAG-UA |AA-AU--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCUCCCAGU GAGAA---UG C|CCU-Ccac --gu-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-caaua- -----)---- 1261 ---------- ---------- ---g--acu- a-aAAGGAGC |--------- cGACAUCA-- 1321 -CGCACACU- -----(aaca c--------- ---------- ---------- ------)--- 1381 --AGU|---G GCUCA--CAA C|GUCUU-GC --|------- (-uca--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG CAua---C-A 1501 GCA|GUA-AC AAAAUUUACG C-AAUAUAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-UAG--au acacca---- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 ACCUA-AUAA A-------ua uaCGGC|GUA AAGCGUGUUu ---a-a---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u cuauacuuaa acuaaa--gu -----|UAAA ucCCGA-CUA ----AGCU(G 2341 UAAAA)AGCU CC-------A GUCU-GacuU AAAa------ -----uaauc -uAC(-GAAA 2401 -)GU|g---- ----acuuua auacu----- ---------- u-u-gaagAC ACGAC-AGCU 2461 A-AGG---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-C-A 2521 U--AAAU-AA |AU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -au(aaac)a a---A-UUUA 2701 U-U|--C|GC C-AGAG-UAC UACAAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-CC CCUCUAGA|G GAGCCUGU-U |CUAUA--AC CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUUACC ACCUCUUGCU aa-------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- uu-C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A A-UAA)AGG- -----(uuu- 3181 ua-)------ A-AGUAAGCA CAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC UAU------- ---------G 3841 G-G-GU-GG- AA-AGC--AA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u cu---)---- ---------- ---------- UAG-AGuauu 4021 ---------- ------ACGA --AUAUU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--A-) U-AA-G--AA -U--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UcaagA(- AUAGA-GA-- --)GCUUGAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- aUAA-aGGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaugc-a- 4381 acu---ccca caa------c aaucuacau- aaaacaaa-- uu-----aua gcgcauga-- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAUG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAGUA GA-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (19)-Probo 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.E.max.1 5213 bp RNA RNA 01-JUN-1996 DEFINITION Mitochondrion Elephas maximus.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION X93602 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Elephas maximus. ORGANISM Mitochondrion Elephas maximus. REFERENCE 1 (bases 1 to 958) AUTHORS Lavergne,A., Douzery,E., Stichler,T., Catzeflis,F.M. and Springer,M.S. TITLE Interordinal mammalian relationhips: evidence for paenungulate monophyly is provided by complete mitochondrial 12S rRNA sequences JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 958) AUTHORS Lavergne,A. TITLE Direct Submission JOURNAL Submitted (30-NOV-1995) A. Lavergne, Laboratoire Paleontologie - URA327 CNRS, Institut Sciences Evolution, Universite Montpellier 2, Pl. E. Bataillon, F-34095 Montpellier, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X93602 BASE COUNT 329 a 218 c 182 g 229 t 4255 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC C|GGCCU-UC UUA-UUGGUU -A-CUAG-GA |AA-CU--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gcCCGCCAGU GAAUA---CG C|CUU-cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(aucgcu- -----)---- 1261 ---------- ---------- ---g--auc- a-aAGAGAGC |--------- uGACAUCA-- 1321 -AGCACACAC U----(--cc a--------- ---------- ---------- ------)--- 1381 AGUGU|---A GCUCA--UAA C|GUCUC-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAA----C-A 1501 GCA|GUA-GU AAAUAUUUAG C-AAUUAAC( ---------- ----AAAA)G UUAGA-CUA| 1561 A|-GUUA-U- CC-UAAuaaa ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGACU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCAACC-GC -GGC-CA)-U ACGAUU|--- -AGU-CCA-- 1981 AAUUA-AUAA G-------ca uaCGGC|GUA AAGCGUAUua -gaagag--- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ---uuaagaa aauaaa--gu -----|UAAA UCUUAUACU- ----AGCU(G 2341 UUUAA)AGCu ca-------A GAUA-AGACA UAA------- ----auagcc -uAC(-GAAA 2401 -)GU|g---- ----acuuua auaa------ ---------u ccuaa-acAU ACGAU-AGCU 2461 A-GGG---UA CAAACUGAG( AUUAGAUAC) CUCA-CUAU| -GCCU-AGC- CCUAAA-CUU 2521 U--GAUA-GC |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ccu(uuac)a ----A-GCUA 2701 U-C|--C|GC C-AGAG-AAC UACUAGC(-- -CAGA--)GC UUA--AAACU UAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CACCUAGG|G GAGCCUGU-C |UCAUA--AC CG(AUGAACC 2821 C--------- ----)CGAUA C-ACCUUACC GUCACUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CCA-UA|UA- 3121 |CC|-AC--C |A------UC UU-CA|G-CA AAC-|CC-(U --AUA)-GG- -----(cac- 3181 aa-)------ A-AGUGAGCU UAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aaccc- 3781 ---------A UGAAAA-AGU U-AGGCCGAG G|UGUC|GCC UAC------- ---------G 3841 U-G-AC-GG- UC-AAA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcaga 4021 uaa------- ------ACGG --AUACC-AC U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) A-GG-U--GG -U--UGAAG- -GCGGAUUUA 4141 G-U--AGUAA A-CUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAA--GGCC 4261 AUGAAG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 cuu----cca c-aucuaaca au--cau--a uuacagauuu aaa-caaa-- -uacaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GU- GCUUGGGAAA CU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.E.max.2 5213 bp RNA RNA 04-MAR-1998 DEFINITION Mitochondrion Elephas maximus.; 12S ribosomal RNA. ACCESSION D50843 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Elephas maximus. ORGANISM Mitochondrion Elephas maximus. REFERENCE 1 (sites) AUTHORS Noro,M., Masuda,R., Dubrovo,I.A., Yoshida,M.C. and Kato,M. TITLE Molecular phylogenetic inference of the woolly mammoth Mammuthus primigenius, based on complete sequences of mitochondrial cytochrome b and 12S ribosomal RNA genes JOURNAL J. Mol. Evol. 46, 314-326 (1998) STANDARD No information REFERENCE 2 (bases 1 to 961) AUTHORS Masuda,R., Noro,M., Dubrovo,I.A., Yoshida,M.C. and Kato,M. TITLE Mitochondrial DNA sequences of the wooly mammoth Mammuthus primigenius and its molecular phylogenetic inference JOURNAL Unpublished (1995) STANDARD No information REFERENCE 3 (bases 1 to 961) AUTHORS Masuda,R. TITLE Direct Submission JOURNAL Submitted (01-JUN-1995) to the DDBJ/EMBL/GenBank databases. Ryuichi Masuda, Hokkaido University, Chromosome Research Unit, Faculty of Science; North 10, West 8, Kita-ku, Sapporo, Hokkaido 060, Japan (E-mail:masudary@ees.hokudai.ac.jp, Tel: +81-11-706-3541, Fax:+81-11-736-6304) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: D50843 Sequence updated (29-Mar-1997) by: Ryuichi Masuda. BASE COUNT 330 a 220 c 182 g 229 t 4252 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC C|GGCCU-UC UUA-UUGGUU -A-CUAG-GA |AA-CU--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCGCCAGU GAAUA---CG C|CUU-cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(aucgcu- -----)---- 1261 ---------- ---------- ---g--auc- a-aAGAGAGC |--------- uGACAUCA-- 1321 -AGCACACAC U----(--cc a--------- ---------- ---------- ------)--- 1381 AGUGU|---A GCUCA--UAA C|GUCUC-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAA----C-A 1501 GCA|GUA-GU AAAUAUUUAG C-AAUUAAC( ---------- ----AAAA)G UUAGA-CUA| 1561 A|-GUUA-U- CC-UAAuaaa ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGACU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCAACC-GC -GGC-CA)-U ACGAUU|--- -AGU-CCA-- 1981 AAUUA-AUAA G-------ca uaCGGC|GUA AAGCGUAUua -gaagag--- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ---uuaagaa aauaaa--gu -----|UAAA UCUUAUACU- ----AGCU(G 2341 UUUAA)AGCu ca-------A GAUA-AGACA UAA------- ----auagcc -uAC(-GAAA 2401 -)GU|g---- ----acuuua auaa------ ---------u ccuaa-acAU ACGAU-AGCU 2461 A-GGG---UA CAAACUGAG( AUUAGAUAC) CUCA-CUAU| -GCCU-AGC- CCUAAA-CUU 2521 U--GAUA-GC |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ccu(uuac)a a---A-GCUA 2701 U-C|--C|GC C-AGAG-AAC UACUAGC(-- -CAGA--)GC UUA--AAACU UAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CACCUAGG|G GAGCCUGU-C |UCAUA--AC CG(AUGAACC 2821 C--------- ----)CGAUA C-ACCUUACC GUCACUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CCA-UA|UA- 3121 |CC|-AC--C |A------UC UU-CA|G-CA AAC-|CCC(U --AUA)GGG- -----(cac- 3181 aa-)------ A-AGUGAGCU UAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aaccc- 3781 ---------A UGAAAA-AGU U-AGGCCGAG G|UGUC|GCC UAC------- ---------G 3841 U-G-AC-GG- UC-AAA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcaga 4021 caa------- ------ACGG --AUACC-AC U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) A-GG-U--GG -U--UGAAG- -GCGGAUUUA 4141 G-U--AGUAA A-CUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAA--GGCC 4261 AUGAAG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 cuu----cca c-aucuaaca au--cau--a uuacagauuu aaa-caaa-- -uacaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA CU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.E.max.3 5213 bp RNA RNA 04-MAR-1998 DEFINITION Mitochondrion Elephas maximus.; 12S ribosomal RNA. ACCESSION D50845 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Elephas maximus. ORGANISM Mitochondrion Elephas maximus. REFERENCE 1 (sites) AUTHORS Noro,M., Masuda,R., Dubrovo,I.A., Yoshida,M.C. and Kato,M. TITLE mitochondrial cytochrome b and 12S ribosomal RNA genes Molecular phylogenetic inference of the woolly mammoth Mammuthus primigenius, based on complete sequences of JOURNAL J. Mol. Evol. 46, 314-326 (1998) STANDARD No information REFERENCE 2 (bases 1 to 961) AUTHORS Masuda,R., Noro,M., Dubrovo,I.A., Yoshida,M.C. and Kato,M. TITLE Mitochondrial DNA sequences of the wooly mammoth Mammuthus primigenius and its molecular phylogenetic inference JOURNAL Unpublished (1995) STANDARD No information REFERENCE 3 (bases 1 to 961) AUTHORS Masuda,R. TITLE Direct Submission JOURNAL Submitted (01-JUN-1995) to the DDBJ/EMBL/GenBank databases. Ryuichi Masuda, Hokkaido University, Chromosome Research Unit, Faculty of Science; North 10, West 8, Kita-ku, Sapporo, Hokkaido 060, Japan (E-mail:masudary@ees.hokudai.ac.jp, Tel: +81-11-706-3541, Fax:+81-11-736-6304) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: D50845 Sequence updated (29-Mar-1997) by: Ryuichi Masuda. BASE COUNT 330 a 219 c 183 g 229 t 4252 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC C|GGCCU-UC UUA-UUGGUU -A-CUAG-GA |AA-CU--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCGCCAGU GAAUA---CG C|CUU-cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(aucgcu- -----)---- 1261 ---------- ---------- ---g--auc- a-aAGAGAGC |--------- uGACAUCA-- 1321 -AGCACACAC U----(--cc a--------- ---------- ---------- ------)--- 1381 AGUGU|---A GCUCA--UAA C|GUCUC-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAA----C-A 1501 GCA|GUA-GU AAAUAUUUAG C-AAUUAAC( ---------- ----AAAA)G UUAGA-CUA| 1561 A|-GUUA-U- CC-UAAuaaa ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGACU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCAACC-GC -GGC-CA)-U ACGAUU|--- -AGU-CCA-- 1981 AAUUA-AUAA G-------ca uaCGGC|GUA AAGCGUAUua -gaagag--- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ---uuaagaa aauaaa--gu -----|UAAA UCUUAUACU- ----AGCU(G 2341 UUUAA)AGCu ca-------A GAUA-AGACA UAA------- ----auagcc -uAC(-GAAA 2401 -)GU|g---- ----acuuua auaa------ ---------u ccuaa-acAU ACGAU-AGCU 2461 A-GGG---UA CAAACUGAG( AUUAGAUAC) CUCA-CUAU| -GCCU-AGC- CCUAAA-CUU 2521 U--GAUA-GC |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ccu(uuac)a a---A-GCUA 2701 U-C|--C|GC C-AGAG-AAC UACUAGC(-- -CAGA--)GC UUA--AAACU UAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CACCUAGG|G GAGCCUGU-C |UCAUA--AC CG(AUGAACC 2821 C--------- ----)CGAUA C-ACCUUACC GUCACUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CCA-UA|UA- 3121 |CC|-AC--C |A------UC UU-CA|G-CA AAC-|CCC(U --AUA)GGG- -----(cac- 3181 aa-)------ A-AGUGAGCU UAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aaccc- 3781 ---------A UGAAAA-AGU U-AGGCCGAG G|UGUC|GCC UAC------- ---------G 3841 U-G-AC-GG- UC-AAA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcaga 4021 uaa------- ------ACGG --AUACC-AC U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) A-GG-U--GG -U--UGAAG- -GCGGAUUUA 4141 G-U--AGUAA A-CUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAA--GGCC 4261 AUGAAG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 cuu----cca c-aucuaaca au--cau--a uuacagauuu aaa-caaa-- -uacaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GU- GCUUGGGAAA CU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.L.afr.1 5213 bp RNA RNA 28-JUL-1996 DEFINITION Mitochondrion Loxodonta africana.; . ACCESSION U60182 KEYWORDS . SOURCE Mitochondrion Loxodonta africana. ORGANISM Mitochondrion Loxodonta africana. REFERENCE 1 (bases 1 to 961) AUTHORS Springer,M.S. and Douzery,E. TITLE Secondary structure and patterns of evolution among mammalian mitochondrial 12S rRNA molecules JOURNAL J. Mol. Evol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 961) AUTHORS Lavergne,A., Douzery,E., Stichler,T., Catzeflis,F. and Springer,M. TITLE Between order mammalian relationships: paenungulate monophyly is evidenced by the complete 12S rDNA gene JOURNAL Mol. Phylogenet. Evol. (1996) In press STANDARD No information REFERENCE 3 (bases 1 to 961) AUTHORS Springer,M.S. TITLE Direct Submission JOURNAL Submitted (06-JUN-1996) Mark S. Springer, University of California, Biology, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U60182, D50847 BASE COUNT 330 a 220 c 183 g 228 t 4252 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC C|GGCCU-UC UUA-UUGGUU -A-CUAG-GA |AA-CU--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCGCCAGU GAAUA---CG C|CUU-cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(aucacc- -----)---- 1261 ---------- ---------- ---g--auc- a-aAGAGAGC |--------- uGGCAUCA-- 1321 -AGCACACAC U----(--cu a--------- ---------- ---------- ------)--- 1381 AGUGU|---A GCUCA--UGA C|GUCUC-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAA----C-A 1501 GCA|GUA-GU AAAUAUUUAG C-AAUUAAC( ---------- ----AAAA)G UUAGA-CUA| 1561 A|-GUUA-U- CC-UAAuaaa ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGACU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCAACC-GC -GGC-CA)-U ACGAUU|--- -AGU-CCA-- 1981 AAUUA-AUAA G-------ca uaCGGC|GUA AAGCGUAUca -gaagaa--- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ---uuaagaa aauaaa--gu -----|UAAA UCUUAUACU- ----AGCU(G 2341 UUUAA)AGCu ca-------A GAUA-AGACA UAA------- ----auaacc -uAC(-GAAA 2401 -)GU|g---- ----acuuua auaa------ ---------u ccuaa-acAU ACGAU-AGCU 2461 A-GGG---UA CAAACUGAG( AUUAGAUAC) CUCA-CUAU| -GCCU-AGC- CCUAAA-CUU 2521 U--GAUA-GC |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ccu(uuac)a a---A-GCUA 2701 U-C|--C|GC C-AGAG-AAC UACUAGC(-- -CAGA--)GC UUA--AAACU UAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CACCUAGG|G GAGCCUGU-C |UCGUA--AC CG(AUGAACC 2821 C--------- ----)CGAUA U-ACCUUACC GUCACUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CCA-UA|UA- 3121 |CC|-AC--C |A------UC UU-CA|G-CA AAC-|CCC(U --AUA)GGG- -----(cac- 3181 aa-)------ A-AGUGAGCU UAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aaccc- 3781 ---------A UGAAAA-AGU U-AGGCCGAG G|UGUC|GCC UAC------- ---------G 3841 U-G-AC-GG- UC-AAA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcaga 4021 caa------- ------ACGG --AUAUC-AC U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) G-GG-U--GG -U--UGAAG- -GCGGAUUUA 4141 G-U--AGUAA A-CUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAA--GGCU 4261 AUGAAG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 ucc----cca c-aucaaaca au--cau--a uuacagauuu aaa-caaa-- -uacaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGAUAA CU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.L.afr.2 5213 bp RNA RNA 04-MAR-1998 DEFINITION Mitochondrion Loxodonta africana.; 12S ribosomal RNA. ACCESSION AB0024 1 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Loxodonta africana. ORGANISM Mitochondrion Loxodonta africana. REFERENCE 1 (sites) AUTHORS Noro,M., Masuda,R., Dubrovo,I.A., Yoshida,M.C. and Kato,M. TITLE Molecular phylogenetic inference of the woolly mammoth Mammuthus primigenius, based on complete sequences of mitochondrial cytochrome b and 12S ribosomal RNA genes JOURNAL J. Mol. Evol. 46, 314-326 (1998) STANDARD No information REFERENCE 2 (bases 1 to 961) AUTHORS Masuda,R. TITLE Direct Submission JOURNAL Submitted (28-MAR-1997) to the DDBJ/EMBL/GenBank databases. Ryuichi Masuda, Hokkaido University, Chromosome Research Unit, Faculty of Science; North 10, West 8, Kita-ku, Sapporo, Hokkaido 060, Japan (E-mail:masudary@ees. hokudai.ac.jp, Tel: +81-11-706-3541, Fax:+81-11-736-6304) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB002411 BASE COUNT 329 a 220 c 184 g 228 t 4252 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC C|GGCCU-UC UUA-UUGGUU -A-CUAG-GA |AA-CU--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCGCCAGU GAAUA---CG C|CUU-cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(aucacc- -----)---- 1261 ---------- ---------- ---g--auc- a-aAGAGAGC |--------- uGGCAUCA-- 1321 -AGCACACAC U----(--cu a--------- ---------- ---------- ------)--- 1381 AGUGU|---A GCUCA--UGA C|GUCUC-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAA----C-A 1501 GCA|GUA-GU AAAUAUUUAG C-AAUUAAC( ---------- ----AAAA)G UUAGA-CUA| 1561 A|-GUUA-U- CC-UAAuaaa ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGACU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCAACC-GC -GGC-CA)-U ACGAUU|--- -AGU-CCA-- 1981 AAUUA-AUAA G-------ca uaCGGC|GUA AAGCGUAUca -gaagaa--- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ---uuaagaa aauaaa--gu -----|UAAA UCUUAUACU- ----AGCU(G 2341 UUUAA)AGCu ca-------A GAUA-AGACA UAA------- ----auagcc -uAC(-GAAA 2401 -)GU|g---- ----acuuua auaa------ ---------u ccuaa-acAU ACGAU-AGCU 2461 A-GGG---UA CAAACUGAG( AUUAGAUAC) CUCA-CUAU| -GCCU-AGC- CCUAAA-CUU 2521 U--GAUA-GC |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ccu(uuac)a a---A-GCUA 2701 U-C|--C|GC C-AGAG-AAC UACUAGC(-- -CAGA--)GC UUA--AAACU UAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CACCUAGG|G GAGCCUGU-C |UCGUA--AC CG(AUGAACC 2821 C--------- ----)CGAUA U-ACCUUACC GUCACUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CCA-UA|UA- 3121 |CC|-AC--C |A------UC UU-CA|G-CA AAC-|CCC(U --AUA)GGG- -----(cac- 3181 aa-)------ A-AGUGAGCU UAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aaccc- 3781 ---------A UGAAAA-AGU U-AGGCCGAG G|UGUC|GCC UAC------- ---------G 3841 U-G-AC-GG- UC-AAA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcaga 4021 caa------- ------ACGG --AUAUC-AC U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) G-GG-U--GG -U--UGAAG- -GCGGAUUUA 4141 G-U--AGUAA A-CUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAA--GGCC 4261 AUGAAG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 ucc----cca c-aucaaaca au--cau--a uuacagauuu aaa-caaa-- -uacaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA CU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.L.afr.3 5213 bp RNA RNA 02-APR-1998 DEFINITION Mitochondrion Loxodonta africana.; complete genome. ACCESSION AJ2248 1 KEYWORDS complete genome. SOURCE Mitochondrion Loxodonta africana. ORGANISM Mitochondrion Loxodonta africana. REFERENCE 1 (bases 1 to 16866) AUTHORS Hauf,J., Chalwatzis,N., Joger,U. and Zimmermann,F.K. TITLE (Loxodonta africana) and its implication on the assessment of the systematic position of the Proboscidea The complete mitochondrial sequence of the African Elephant JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 16866) AUTHORS Hauf,J. TITLE Direct Submission JOURNAL Submitted (26-FEB-1998) Hauf J., Institut fuer Mikrobiologie und Genetik, TU Darmstadt, Schnittspahnstr. 10, D-64287 Darmstadt, GERMANY STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AJ224821 BASE COUNT 330 a 221 c 184 g 226 t 4252 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC C|GGCCU-UC UUA-UUGGUU -A-CUAG-GA |AA-CU--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCGCCAGU GAAUA---CG C|CUU-cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(aucacc- -----)---- 1261 ---------- ---------- ---g--auc- a-aAGAGAGC |--------- uGGCAUCA-- 1321 -AGCACACAC U----(--cu a--------- ---------- ---------- ------)--- 1381 AGUGU|---A GCUCA--UGA C|GUCUC-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAA----C-A 1501 GCA|GUA-GU AAAUAUUUAG C-AAUUAAC( ---------- ----AAAA)G UUAGA-CUA| 1561 A|-GGUA-U- CC-UAAuaaa ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGACU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCAACC-GC -GGC-CA)-U ACGAUU|--- -AGU-CCA-- 1981 AAUUA-AUAA G-------ca uaCGGC|GUA AAGCGUAUca -gaagaa--- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ---uuaagaa aauaaa--gu -----|UAAA UCUUAUACU- ----AGCU(G 2341 UUUAA)AGCu ca-------A GAUA-AGACA UAA------- ----auaacc -uAC(-GAAA 2401 -)GU|g---- ----acuuua auaa------ ---------u ccuaa-acAU ACGAU-AGCU 2461 A-GGG---UA CAAACUGAG( AUUAGAUAC) CUCA-CUAU| -GCCU-AGC- CCUAAA-CUU 2521 U--GAUA-GC |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ccu(uuac)a a---A-GCUA 2701 U-C|--C|GC C-AGAG-AAC UACUAGC(-- -CAGA--)GC UUA--AAACU UAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CACCUAGG|G GAGCCUGU-C |UCGUA--AC CG(AUGAACC 2821 C--------- ----)CGAUA U-ACCUUACC GUCACUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CCA-UA|UA- 3121 |CC|-AC--C |A------UC UU-CA|G-CA AAC-|CCC(C --AUA)GGG- -----(cac- 3181 aa-)------ A-AGUGAGCU UAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aaccc- 3781 ---------A UGAAAA-AGU U-AGGCCGAG G|UGUC|GCC UAC------- ---------G 3841 U-G-AC-GG- UC-AAA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAcaga 4021 caa------- ------ACGG --AUAUC-AC U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) G-GG-U--GG -U--UGAAG- -GCGGAUUUA 4141 G-U--AGUAA A-CUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAA--GGCU 4261 AUGAAG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 ucc----cca c-aucaaaca au--cau--a uuacagauuu aaa-caaa-- -uacaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGAUAA CU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.primi 5213 bp RNA RNA 04-MAR-1998 DEFINITION Mitochondrion Mammuthus primigenius.; 12S ribosomal RNA. ACCESSION D50841 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Mammuthus primigenius. ORGANISM Mitochondrion Mammuthus primigenius. REFERENCE 1 (sites) AUTHORS Noro,M., Masuda,R., Dubrovo,I.A., Yoshida,M.C. and Kato,M. TITLE Molecular phylogenetic inference of the woolly mammoth Mammuthus primigenius, based on complete sequences of mitochondrial cytochrome b and 12S ribosomal RNA genes JOURNAL J. Mol. Evol. 46, 314-326 (1998) STANDARD No information REFERENCE 2 (bases 1 to 961) AUTHORS Masuda,R., Noro,M., Dubrovo,I.A., Yoshida,M.C. and Kato,M. TITLE Mitochondrial DNA sequences of the wooly mammoth Mammuthus primigenius and its molecular phylogenetic inference JOURNAL Unpublished (1995) STANDARD No information REFERENCE 3 (bases 1 to 961) AUTHORS Masuda,R. TITLE Direct Submission JOURNAL Submitted (01-JUN-1995) to the DDBJ/EMBL/GenBank databases. Ryuichi Masuda, Hokkaido University, Chromosome Research Unit, Faculty of Science; North 10, West 8, Kita-ku, Sapporo, Hokkaido 060, Japan (E-mail:masudary@ees.hokudai.ac.jp, Tel: +81-11-706-3541, Fax:+81-11-736-6304) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: D50841 Sequence updated (29-Mar-1997) by: Ryuichi Masuda. BASE COUNT 328 a 221 c 185 g 227 t 4252 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC C|GGCCU-UC UUA-UUGGUU -A-CUAG-GA |AA-CU--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCGCCAGU GAAUA---CG C|CUU-cuaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(aucacu- -----)---- 1261 ---------- ---------- ---g--auc- a-aAGAGAGC |--------- uGGCAUCA-- 1321 -AGCACACAC C----(--cc a--------- ---------- ---------- ------)--- 1381 AGUGU|---A GCUCA--UGA C|GUCUC-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAA----C-A 1501 GCA|GUA-GU AAAUAUUUAG C-AAUUAAC( ---------- ----AAAA)G UUAGA-CUA| 1561 A|-GUUA-U- CC-UAAuaaa ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGACU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCAACC-GC -GGC-CA)-U ACGAUU|--- -AGU-CCA-- 1981 AAUUA-AUAA G-------ca uaCGGC|GUA AAGCGUAUua -gaagaa--- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ---uuaagaa aauaaa--gu -----|UAAA UCUUAUACU- ----AGCU(G 2341 UUUAA)AGCu ca-------A GAUA-AGACA UAA------- ----auagcc -uAC(-GAAA 2401 -)GU|g---- ----acuuua auaa------ ---------u ccuaa-acAU ACGAU-AGCU 2461 A-GGG---UA CAAACUGAG( AUUAGAUAC) CUCA-CUAU| -GCCU-AGC- CCUAAA-CUU 2521 U--GAUA-GC |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ccu(uuac)a a---A-GCUA 2701 U-C|--C|GC C-AGAG-AAC UACUAGC(-- -CAGA--)GC UUA--AAACU UAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CACCUAGG|G GAGCCUGU-C |UCGUA--AC CG(AUGAACC 2821 C--------- ----)CGAUA C-ACCUUACC GUCACUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CCA-UA|UA- 3121 |CC|-AC--C |A------UC UU-CA|G-CA AAC-|CCC(U --AUA)GGG- -----(cac- 3181 aa-)------ A-AGUGAGCU UAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aaccc- 3781 ---------A UGAAAA-AGU U-AGGCCGAG G|UGUC|GCC UAC------- ---------G 3841 U-G-AC-GG- UC-AAA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAuaga 4021 caa------- ------ACGG --AUACC-AC U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) G-GG-U--GG -U--UGAAG- -GCGGAUUUA 4141 G-U--AGUAA A-CUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAA--GGCC 4261 AUGAAG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua---- 4381 ccu----cca c-aucaaaca au--cau--a uuacagauuu aaa-caaa-- -uacaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GU- GCUUGGGUAA CU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (19)-Roden 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (20)-Hystr 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (21)-Bathy 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.B.janet 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Bathyergus janetta. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Bathyergus janetta. ORGANISM Mitochondrion Bathyergus janetta. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M63565 DEFINITION B.janetta 12S rRNA gene, complete sequence. SOURCE B.janetta ribosomal RNA. ORGANISM Bathyergus janetta Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Hystricomorpha; Bathyergidae. REFERENCE 1 (bases 1 to 784) AUTHORS Allard,M.W. and Honeycutt,R.L. TITLE Nucleotide sequence variation in the mitochondrial 12s rRNA gene and the phylogeny of african mole-rats (rodentia: Bathyergidae) JOURNAL Mol. Biol. Evol. (1991) In press FEATURES Location/Qualifiers rRNA 1..784 /gene="12S rRNA" BASE COUNT 295 a 153 c 140 g 196 t 4429 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ U|AGCUU-UU UUA-UUAAUU -G-UAAG-CA |GA-AU--UA -CAC-A-UGC 721 -AAAu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- uUAAGCCAGU GAAAA---UG C|CCU-Uuag --au-ca--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---uuc- -----)---- 1261 ---------- ---------- --cg--aua- u-aAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACAC-- -----(auau aa-------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--CGA C|ACCUU-GC --|------- (-uua--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG AAA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-UAUGAAC( ---------- ----GAAA)G UUUGA-CUU| 1561 A|-GUCA-U- GC-AAU---a uaauaa---- ---------- (--------- ---------- 1621 --------)- ---------- ----|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAA A-------cc gccGGC|GUA AAGAGUGUu- -uaaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- -uauaacaaa acuaag--au -----|Uaaa uucUGU-CUC ----UGUU(G 2341 UAAAA)AACc ac-------A GACA-gaugu aaA------- ---cccaaua -aAC(-GCAA 2401 -)GU|a---- ----aucuua ---uuaua-- ---------- ucu-gaacAC ACGAC-AGCU 2461 G-AGA---CC CAAA------ ---------- ---------| -GCUA-AGC- UAUAAA-CAC 2521 A--GAAC-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a acg(aaac)a a---A-AUGU 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -CACG--)GC UAA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAUACC 2821 C--------- ----)CGAUA A-ACCUUACC ACUUUUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(U --AUA)AAG- -----(aau- 3181 aa-)------ a-aGUAAGCG CAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aauc-- 3781 ---------G UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU AAU------- ---------A 3841 A-A-GU-GG- AG-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua ua---)---- ---------- ---------- AAG-AAcacu 4021 uaa------- ------ACGG --AAACU-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-u-) U-GA-U--AG -U--AUAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UCAAGA(- auaga-ga-- --)GCUUGGU U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.B.suill 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Bathyergus suillus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Bathyergus suillus. ORGANISM Mitochondrion Bathyergus suillus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M63564 DEFINITION B.suillus 12S rRNA gene, complete sequence. SOURCE B.suillus ribosomal RNA. ORGANISM Bathyergus suillus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Hystricomorpha; Bathyergidae. REFERENCE 1 (sites) AUTHORS Allard,M.W. and Honeycutt,R.L. TITLE Nucleotide sequence variation in the mitochondrial 12s rRNA gene and the phylogeny of african mole-rats (rodentia: Bathyergidae) JOURNAL Mol. Biol. Evol. (1991) In press FEATURES Location/Qualifiers rRNA 1..783 /gene="12S" BASE COUNT 294 a 157 c 137 g 195 t 4430 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ U|AGCUU-UU UUA-UUAGUU -A-UAAG-CA |GA-AU--UA -CAC-A-UGC 721 -AAAu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- uUAAGCCAGU GAAAA---UG C|CCU-Uuag --au-ca--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---uuc- -----)---- 1261 ---------- ---------- --cg--aua- u-aAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACAC-- -----(auau aa-------- ---------- ---------- ------)--- 1381 ---GC|---A GCUCA--CGA C|ACCUU-GC --|------- (-uua--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG AAA----C-A 1501 GCA|GUG-AU AAAUAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUUGA-CUU| 1561 A|-GUCA-U- GC-AAU---a uaauua---- ---------- (--------- ---------- 1621 --------)- ---------- ----|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -G-U-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AAUUA-AUAA A-------cc accGGC|GUA AAGAGUGUu- -uaaaa---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -uauaacaaa acuaag--au -----|Uaaa uucUGU-CUA ----UGUU(G 2341 UAAAA)AACc ac-------A GACA-gaugu aaA------- ---cccaaua -aAC(-GCAA 2401 -)GU|a---- ----aucuua ---uugua-- ---------- ucu-gaacAC ACGAC-AGCU 2461 A-AGA---CC CAAA------ ---------- ---------| -GCUA-AGC- UAUAAA-CAC 2521 A--GAAC-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a auu(aaac)a a---A-AUGU 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -CACA--)GC UAA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-CC CGCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAUUCC 2821 C--------- ----)CGAUA A-ACCUUACC ACUUUUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --ACA)AAG- -----(uau- 3181 aa-)------ a-aGUAAGCG CAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aauc-- 3781 ---------G UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU AAU------- ---------A 3841 A-A-GU-GG- AG-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua ca---)---- ---------- ---------- AAG-AAcacu 4021 uaa------- ------ACGG --AAACU-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-c-) U-AA-U--GG -U--GUAAG- -GAGGAUUUA 4141 G-U--AGUAA A-CCAAGA(- auaga-ga-- --)GCUUGGU U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.amatu 5213 bp RNA RNA 04-AUG-1997 DEFINITION Cryptomys amatus.; . ACCESSION AF0122 6 KEYWORDS . SOURCE Cryptomys amatus. ORGANISM Cryptomys amatus. REFERENCE 1 (bases 1 to 753) AUTHORS Aguilar,G.H. and Jarvis,J.U.M. Faulkes,C.G., Bennett,N.C., Bruford,M.W., O'Brien,H.P., TITLE mole-rats Ecological constraints drive social evolution in the African JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 753) AUTHORS Faulkes,C.G., Bennett,N.C., Bruford,M.W., O'Brien,H.P., Aguilar,G.H. and Jarvis,J.U.M. TITLE Direct Submission JOURNAL Submitted (02-JUL-1997) Conservation Genetics Group, Institute of Zoology, Regent's Park, London NW1 4RY, UK STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF012216 BASE COUNT 284 a 151 c 144 g 174 t 4460 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~U--UA -CAC-A-UGC 721 -GAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCGAGCCAGU GAGGA---UG C|CCU-Uuau -aau-cg--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---auuc -----)---- 1261 ---------- ---------- --cg--aug- a-aAAGGAGC |--------- GGGUAUCA-- 1321 -AGUUCAC-- -----(acaa aa-------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UCA C|ACCUU-GU --|------- (-aga--)-- -------AC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG UAA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-UAUGAAC( ---------- ----GAAA)G UUUGA-CUU| 1561 A|-GUCA-U- GC-AAU---a caguga---- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AAUUA-AUAA A-------ca auCGGC|GUA AAGAAUGUuu --aaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- auauagcaaa acuaag--au -----|UAAA UCUUGU-CUA ----UGUC(G 2341 UAAAA)AAUU AU-------A GAUA-AGACG AAA------- ---cucaaua -aAC(-GCAG 2401 -)GU|a---- ----aucuua ---uaaua-- ---------- ucu-gaacAC AUGAC-AGCU 2461 U-GGG---CA CAAA-----( ---------) ---------| -GCUA-AGC- CGGAAA-CAC 2521 A--AAAU-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aua(gaac)g a---A-AAGU 2701 U-U|--C|GC C-AGAG--AC UACUACG(-- -CACG--)GC UAA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUUUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CG AAC-|CUU(A --ACA)AAG- -----(uaa- 3181 aa-)------ a-aGUGAGCA CAA-UCAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aaac- 3781 ---------A UAAAGA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------A 3841 A-A-GU-GG- AA-AGU--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ga ca---)---- ---------- ---------- AAG-AAcauu 4021 uaa------- ------ACGA --AAGCU-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAU-U-) A-AA-U--AG -C---AAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaguagua- --)GCUU~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.bocag 5213 bp RNA RNA 04-AUG-1997 DEFINITION Cryptomys bocagei.; . ACCESSION AF0122 3 KEYWORDS . SOURCE Cryptomys bocagei. ORGANISM Cryptomys bocagei. REFERENCE 1 (bases 1 to 770) AUTHORS Faulkes,C.G., Bennett,N.C., Bruford,M.W., O'Brien,H.P., Aguilar,G.H. and Jarvis,J.U.M. TITLE Ecological constraints drive social evolution in the African mole-rats JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 770) AUTHORS Faulkes,C.G., Bennett,N.C., Bruford,M.W., O'Brien,H.P., Aguilar,G.H. and Jarvis,J.U.M. TITLE Direct Submission JOURNAL Submitted (02-JUL-1997) Conservation Genetics Group, Institute of Zoology, Regent's Park, London NW1 4RY, UK STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF012213 BASE COUNT 296 a 155 c 140 g 179 t 4443 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~-~~ ~~~-~~~~UU -G-UAAG-CA |GA-AU--UA -CAC-A-UGC 721 -GAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCAAGCCAGU GAGGA---uG C|CCU-Ucaa --au-cg--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---auuc -----)---- 1261 ---------- ---------- --cg--acg- a-aAAGGAGC |--------- GGGUAUCA-- 1321 -AGUUCAC-- -----(auaa aa-------- ---------- ---------- ------)--- 1381 ---GU|---G GCUCA--UAA C|ACCUC-GU --|------- (-aaa--)-- -------AC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG UAA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-UAUGAAC( ---------- ----GAAA)G UUCGA-CUU| 1561 A|-GUCA-U- GC-AAU---a caauua---- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAA A-------cg auCGGC|GUA AAGAAUGUuu --aagg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u uguaaacaaa acuaag--au -----|UAAA UCUUGU-CUA ----UGUC(G 2341 UAAAA)AAUU AU-------A GAUA-AGCCA AAA------- ---cccaaua -AAC(-GCAA 2401 -)GU|a---- ----aucuua ---uaaua-- ---------- ucu-gaacAC AUGAC-AGCU 2461 U-GGG---UA CAAA-----( ---------) ---------| -GCUA-AGC- CGUAAA-CGC 2521 A--AAAC-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a aua(uaac)a a---A-AAGU 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -CACG--)GC UAA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUUUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --ACA)AAG- -----(uaa- 3181 aa-)------ a-aGUGAGCA UAA-UCAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------A 3841 A-A-GU-GG- GA-AGU--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ga ca---)---- ---------- ---------- AAG-AAcauu 4021 uaa------- ------ACGA --AAGCU-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-u-) U-AA-U--AG -C--ACAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.choma 5213 bp RNA RNA 04-AUG-1997 DEFINITION Cryptomys choma.; . ACCESSION AF0122 7 KEYWORDS . SOURCE Cryptomys choma. ORGANISM Cryptomys choma. REFERENCE 1 (bases 1 to 722) AUTHORS Aguilar,G.H. and Jarvis,J.U.M. Faulkes,C.G., Bennett,N.C., Bruford,M.W., O'Brien,H.P., TITLE mole-rats Ecological constraints drive social evolution in the African JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 722) AUTHORS Faulkes,C.G., Bennett,N.C., Bruford,M.W., O'Brien,H.P., Aguilar,G.H. and Jarvis,J.U.M. TITLE Direct Submission JOURNAL Submitted (02-JUL-1997) Conservation Genetics Group, Institute of Zoology, Regent's Park, London NW1 4RY, UK STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF012217 BASE COUNT 277 a 152 c 130 g 163 t 4491 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |GA-AU--UA -CAC-A-UGC 721 -GAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCGAGCCAGU GAGGA---UG C|CCU-Uuau -aau-cg--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---auuc -----)---- 1261 ---------- ---------- --cg--aua- a-aAAGGAGC |--------- GGGUAUCA-- 1321 -AGUUCAC-- -----(acaa aa-------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UCA C|ACCUC-GU --|------- (-aaa--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACC-)--GG UAA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-UAUGAAC( ---------- ----GAAA)G UUUGA-CUU| 1561 A|-GUCA-U- GC-AAU---a caguua---- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -G-U-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AAUUA-AUAA A-------ca auCGGC|GUA AAGAAUGUuu --aaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- auauagcaaa acuaag--au -----|UAAA UCUUGU-CUA ----UGUC(G 2341 UAAAA)AAUU AU-------A GAUA-AGACG AAA------- ---cucaaua -aAC(-GCAG 2401 -)GU|a---- ----aucuua ---uaaua-- ---------- ucu-gaacAC AUGAC-AGCU 2461 U-GGA---CA CAAA-----( ---------) ---------| -GCUA-AGC- CGUAAA-CAC 2521 A--AAAU-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a aua(gaac)g a---A-AAGU 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -CACG--)GC UAA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUUUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CG AAC-|CUU(A --ACA)AAG- -----(uaa- 3181 aa-)------ a-aGUGAGCA CAA-CCAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aaac- 3781 ---------A UAAAGA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------A 3841 A-A-GU-GG- GA-AGU--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ga ca---)---- ---------- ---------- AAG-AAcauu 4021 uaa------- ------ACGG --AAGCU-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAU-U-) A-AA-U--AG -C--AUAAG~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.damar 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Cryptomys damarensis. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Cryptomys damarensis. ORGANISM Mitochondrion Cryptomys damarensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M63569 DEFINITION C.damarensis 12S rRNA gene, complete sequence. SOURCE C.damarensis ribosomal RNA. ORGANISM Cryptomys damarensis Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Hystricomorpha; Bathyergidae. REFERENCE 1 (sites) AUTHORS Allard,M.W. and Honeycutt,R.L. TITLE Nucleotide sequence variation in the mitochondrial 12s rRNA gene and the phylogeny of african mole-rats (rodentia: Bathyergidae) JOURNAL Mol. Biol. Evol. (1991) In press FEATURES Location/Qualifiers rRNA 1..788 /gene="12S rRNA" BASE COUNT 300 a 156 c 145 g 187 t 4425 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ U|GGCUU-UU UUA-UUAGUU -G-UAAG-CA |GA-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCAAGCCAGU GAGGA---UG C|CCU-Uuau -aau-cg--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---auuc -----)---- 1261 ---------- ---------- --cg--aua- a-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGUUCGC-- -----(acaa aa-------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--CAA C|ACCUU-GU --|------- (-aaa--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-UAUGAAC( ---------- ----GAAA)G UUCGA-CUU| 1561 A|-GUCA-U- GC-AAU---a caguua---- ---------- (--------- ---------- 1621 --------)- ---------- ----|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCGCC-GC -G-U-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AAUUA-AUAA A-------ca aucGGC|GUA AAGAAUGUuu --aaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- uuauaacaaa acuaag--au -----|UAAA UCUUGU-CUA ----UGUC(G 2341 UAAAA)AAUU AU-------A GAUA-agacg aaA------- -cucagaaua -aAC(-GCAG 2401 -)GU|a---- ----aucuua ---uaaua-- ---------- ucu-gaacAC AUGAC-AGCU 2461 U-GGG---UA CAAA-----( ---------) ---------| -GCCA-AGC- CGUAAA-CAC 2521 A--AAAU-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a aua(gaac)g ga--A-AAGU 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -CACG--)GC UAA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUUUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CG AAC-|CUU(A --ACA)AAG- -----(uaa- 3181 aa-)------ a-aGUGAGCA CAA-UCAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aaac-- 3781 ---------A UAAAGA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------A 3841 A-A-GU-GG- AA-AGU--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ga cg---)---- ---------- ---------- AAG-AAcauu 4021 uaa------- ------ACGA --AAGCU-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-u-) C-AA-U--AG -C--ACAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.darli 5213 bp RNA RNA 04-AUG-1997 DEFINITION Cryptomys darlingi.; . ACCESSION AF0122 5 KEYWORDS . SOURCE Cryptomys darlingi. ORGANISM Cryptomys darlingi. REFERENCE 1 (bases 1 to 719) AUTHORS Faulkes,C.G., Bennett,N.C., Bruford,M.W., O'Brien,H.P., Aguilar,G.H. and Jarvis,J.U.M. TITLE Ecological constraints drive social evolution in the African mole-rats JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 719) AUTHORS Faulkes,C.G., Bennett,N.C., Bruford,M.W., O'Brien,H.P., Aguilar,G.H. and Jarvis,J.U.M. TITLE Direct Submission JOURNAL Submitted (02-JUL-1997) Conservation Genetics Group, Institute of Zoology, Regent's Park, London NW1 4RY, UK STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF012215 BASE COUNT 271 a 151 c 132 g 165 t 4494 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- --------.- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~C |GA-AU--UA -CAC-A-UGC 721 -GAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCAAGCCAGU GAGGA---UG C|CCU-Uuau -aau-cg--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---auuc -----)---- 1261 ---------- ---------- --cg--aug- a-aAAGGAGC |--------- GGGUAUCA-- 1321 -AGUUCAC-- -----(acaa aa-------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UCA C|ACCUU-GU --|------- (-aga--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-UAUGAAC( ---------- ----GAAA)G UUCGA-CUU| 1561 A|-GUCA-U- GC-AAU---a caauua---- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AAUUA-AUAA A-------ca acCGGC|GUA AAGAAUGUuu --aaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u uauaaacaaa acuaag--au -----|UAAA UCUUGC-UUG ----UGUC(G 2341 UAAAA)AAUU AU-------A GAUA-AGACG AAA------- ---cucaaua -aAC(-GCAG 2401 -)GU|a---- ----aucuua ---caaua-- ---------- ucu-gaacAC AUGAC-AGCU 2461 U-GGG---UA CAAA-----( ---------) ---------| -GCUA-AGC- UGUAAA-CAC 2521 A--AAAU-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a aug(gaac)g a---A-AAAU 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -CACG--)GC UAA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUUUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CG AAC-|CUU(A --ACA)AAG- -----(uaa- 3181 aa-)------ a-aGUGAGCA CAA-UCAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aaac- 3781 ---------A UAAAGA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------A 3841 A-A-GU-GG- GA-AGU--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ga ca---)---- ---------- ---------- AAG-AAcauu 4021 uaa------- ------ACGA --AAGCU-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAU-U-) C-AA-U--AG ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.hotte 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Cryptomys hottentotus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Cryptomys hottentotus. ORGANISM Mitochondrion Cryptomys hottentotus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M63567 DEFINITION C.hottentotus 12S rRNA gene, complete sequence. SOURCE C.hottentotus ribosomal RNA. ORGANISM Cryptomys hottentotus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Hystricomorpha; Bathyergidae. REFERENCE 1 (sites) AUTHORS Allard,M.W. and Honeycutt,R.L. TITLE Nucleotide sequence variation in the mitochondrial 12s rRNA gene and the phylogeny of african mole-rats (rodentia: Bathyergidae) JOURNAL Mol. Biol. Evol. (1991) In press FEATURES Location/Qualifiers rRNA 1..782 /gene="12S rRNA" BASE COUNT 304 a 155 c 136 g 187 t 4431 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ U|AGCUU-UU UUA-UUAGUU -G-UAUG-CA |AA-UU--UA -CAC-A-UGC 721 -AAGa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCAAGCCGGU GAGAA---UG C|CCU-Uaaa --au-ca--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---aca- -----)---- 1261 ---------- ---------- --ug--aua- a-gAAGGAGC |--------- gGGUAUCA-- 1321 -AGUGCAC-- -----(acaa aa-------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--AUA C|ACCUU-GU --|------- (-aca--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-UAUGAAC( ---------- ----GAAA)G UUCGA-CUU| 1561 A|-GUUA-U- GC-AAU---u uaccua---- ---------- (--------- ---------- 1621 --------)- ---------- ----|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -G-U-UA)-U ACGAUU|--- -GAC-CCG-- 1981 AAUUA-AUAA A-------ca c-cGGC|GUA AAGAAUGUuu ---agg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------a auaugaucaa acuaag--au -----|UAAA AUUUAU-CUA ----UAUC(G 2341 UAAAA)AAUU CU-------A GACA-aauca aaA------- ---cucaaua -aAC(-GCAA 2401 -)GU|a---- ----aucuua ---uaaua-- ---------- ucu-gaacAC AUGAC-AGCU 2461 C-AGA---CC CAAA-----( ---------) ---------| -GCUG-AGC- CGUAAA-CAU 2521 A--AAUU-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a aug(aaac)a a---A-AUAU 2701 U-U|--C|GC C-AGAG-GAC UACCAGC(-- -AACA--)GC UAA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUAUUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC UUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CG AAC-|CUU(U --AUA)AAG- -----(aaa- 3181 aa-)------ a-aGUAAGCA CAA-UCAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aagc-- 3781 ---------A UAAAGA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------A 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa ca---)---- ---------- ---------- AAG-AAcauc 4021 uaa------- ------ACGA --AAGCC-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-u-) U-AA-U--AG -U--GCAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUGAGA(- auaga-ga-- --)GCUUAAU U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.h.nim 5213 bp RNA RNA 04-AUG-1997 DEFINITION Cryptomys hottentotus nimrodi.; . ACCESSION AF0122 9 KEYWORDS . SOURCE Cryptomys hottentotus nimrodi. ORGANISM Cryptomys hottentotus nimrodi. REFERENCE 1 (bases 1 to 739) AUTHORS Faulkes,C.G., Bennett,N.C., Bruford,M.W., O'Brien,H.P., Aguilar,G.H. and Jarvis,J.U.M. TITLE Ecological constraints drive social evolution in the African mole-rats JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 739) AUTHORS Faulkes,C.G., Bennett,N.C., Bruford,M.W., O'Brien,H.P., Aguilar,G.H. and Jarvis,J.U.M. TITLE Direct Submission JOURNAL Submitted (02-JUL-1997) Conservation Genetics Group, Institute of Zoology, Regent's Park, London NW1 4RY, UK STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF012219 BASE COUNT 290 a 150 c 120 g 179 t 4474 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~UU-UU UUA-UUAGUU -G-UAUG-CA |AA-UU--UA -CAC-A-UGC 721 -GAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCAAGCCAGU GAGAA---UG C|CCU-Uaaa --au-ca--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---aca- -----)---- 1261 ---------- ---------- --ug--aua- a-gAAGGAGC |--------- GGGUAUCA-- 1321 -AGUACAC-- -----(auaa aa-------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--AUA C|ACCUU-GU --|------- (-aca--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--UG AAA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUU| 1561 A|-GUUA-U- GC-AAU---u acuua----- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAA A--------c acCGGC|GUA AAGAAUGUuu --aaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- auauaaccaa acuaag--au -----|UAAA UUUUAU-CUA ----UAUC(G 2341 UAAAA)AAUU CU-------A GAUA-AACUA UAA------- ---cucaaua -aAC(-GCAA 2401 -)GU|a---- ----aucuua ---uaaua-- ---------- ucc-gaauAC AUGAC-AGCU 2461 C-AGG---CU CAAA-----( ---------) ---------| -GCUG-AGC- CGUAAA-CAU 2521 A--AAUU-AU |UG|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a aug(aaac)a a---A-AUAU 2701 U-U|--C|GC C-AGAG-GAC UACCAGC(-- -AACA--)GC UAA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUAUUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU UUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CG AAC-|CUU(A --AUA)AAG- -----(aaa- 3181 aa-)------ A-AGUAAGCA CAA-UCAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aagc- 3781 ---------A UAAAGA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------A 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa ca---)---- ---------- ---------- AAG-AAcacc 4021 caa------- ------ACGA --AAACU-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAU-U-) U-AA-U--AG -U--GUAAG~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.h.pre 5213 bp RNA RNA 04-AUG-1997 DEFINITION Cryptomys hottentotus pretoriae.; . ACCESSION AF0122 8 KEYWORDS . SOURCE Cryptomys hottentotus pretoriae. ORGANISM Cryptomys hottentotus pretoriae. REFERENCE 1 (bases 1 to 747) AUTHORS Aguilar,G.H. and Jarvis,J.U.M. Faulkes,C.G., Bennett,N.C., Bruford,M.W., O'Brien,H.P., TITLE mole-rats Ecological constraints drive social evolution in the African JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 747) AUTHORS Faulkes,C.G., Bennett,N.C., Bruford,M.W., O'Brien,H.P., Aguilar,G.H. and Jarvis,J.U.M. TITLE Direct Submission JOURNAL Submitted (02-JUL-1997) Conservation Genetics Group, Institute of Zoology, Regent's Park, London NW1 4RY, UK STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF012218 BASE COUNT 290 a 155 c 130 g 172 t 4466 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~-~~ ~~~-UUAGUU -G-UAUG-CA |AA-UU--UA -CAC-A-UGC 721 -GAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCAAGCCAGU GAGAA---UG C|CCU-Uaaa --au-cg--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---augu -----)---- 1261 ---------- ---------- --cg--aua- a-gAAGGAGC |--------- GGGUAUCA-- 1321 -AGUACAC-- -----(acaa aa-------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--AUA C|ACCUU-GU --|------- (-uca--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUU| 1561 A|-GUUA-U- GC-AAU---u uauaua---- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGA-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAA A--------c acCGGC|GUA AAGAAUGUuu ---aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------a acauaaccaa acuaag--au -----|UAAA UUUUGU-CUA ----UAUC(G 2341 UAAAA)AAUU CU-------A GACA-AAUUA UAA------- ---cucaaua -aAC(-GCAA 2401 -)GU|a---- ----aucuua ---caauau- ---------- cug--aacAC AUGAC-AGCU 2461 C-AGG---CU CAAA-----( ---------) ---------| -GCUG-AGC- CGUAAA-CAC 2521 A--AACU-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a gua(aaac)a a---A-AUAU 2701 U-U|--C|GC C-AGAG-GAC UACCAGC(-- -AACG--)GC UAA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUAUUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CG AAC-|CUU(A --AUA)AAG- -----(aaa- 3181 aa-)------ A-AGUAAGCA CAA-UCAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aagc- 3781 ---------A UAAAGA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------A 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa cg---)---- ---------- ---------- AAG-AAcauc 4021 uaa------- ------ACGA --AAACU-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAU-C-) U-AA-U--AG -U--GUAAG- -GAGGAUUUA 4141 G-U--AG~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.h.nat 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Cryptomys hottentotus natalensis. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Cryptomys hottentotus natalensis. ORGANISM Mitochondrion Cryptomys hottentotus natalensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M63568 DEFINITION C.natalensis 12S rRNA gene, complete sequence. SOURCE C.natalensis ribosomal RNA. ORGANISM Cryptomys hottentotus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Hystricomorpha; Bathyergidae. REFERENCE 1 (sites) AUTHORS Allard,M.W. and Honeycutt,R.L. TITLE Nucleotide sequence variation in the mitochondrial 12s rRNA gene and the phylogeny of african mole-rats (rodentia: Bathyergidae) JOURNAL Mol. Biol. Evol. (1991) In press FEATURES Location/Qualifiers rRNA 1..783 /gene="12S rRNA" BASE COUNT 302 a 150 c 137 g 194 t 4430 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ U|AGCUU-UU UUA-UUAGUU -G-UAUG-CA |AA-UU--UA -CAC-A-UGC 721 -GAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCAAGCCAGU GAGAA---UG C|CCU-Uaaa --au-ca--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---aca- -----)---- 1261 ---------- ---------- --ug--aua- a-gAAGGAGC |--------- uGGUAUCA-- 1321 -AGUACAC-- -----(acaa aa-------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--AUA C|ACCUU-GU --|------- (-aca--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUU| 1561 A|-GUUA-U- GC-AAU---u auuua----- ---------- (--------- ---------- 1621 --------)- ---------- ----|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAA A-------ca c-cGGC|GUA AAGAAUGUuu --aaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- auauaaccaa acuaag--au -----|UAAA UCUUGU-CUA ----UAUC(G 2341 UAAAA)AAUU UU-------A GACG-aauua uaA------- ---cucaaua -aAC(-Guua 2401 a)GU|a---- ----aucuua ---uaaaa-- ---------- ucu-gaauAC AUGAC-AGCU 2461 C-AGG---CU CAAA-----( ---------) ---------| -GCUA-AGC- CGUAAA-CAC 2521 A--AAUU-AU |UG|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a gca(aaac)a a---A-AUAU 2701 U-U|--C|GC C-AGAG-AAC UACCAGC(-- -AACG--)GC UAA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-CC CGCCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUAUUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU UUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --AUA)AAG- -----(aaa- 3181 aa-)------ a-aGUGAGCA CAA-UCAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aagc-- 3781 ---------A UAAAGA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------A 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa cg---)---- ---------- ---------- AAG-AAcauc 4021 uaa------- ------ACGA --GAACU-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-u-) U-AG-U--AG -U--GUAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUGAGA(- auaga-ga-- --)GCUUAAU U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.mecho 5213 bp RNA RNA 04-AUG-1997 DEFINITION Cryptomys mechowi.; . ACCESSION AF0122 4 KEYWORDS . SOURCE Cryptomys mechowi. ORGANISM Cryptomys mechowi. REFERENCE 1 (bases 1 to 717) AUTHORS Faulkes,C.G., Bennett,N.C., Bruford,M.W., O'Brien,H.P., Aguilar,G.H. and Jarvis,J.U.M. TITLE Ecological constraints drive social evolution in the African mole-rats JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 717) AUTHORS Faulkes,C.G., Bennett,N.C., Bruford,M.W., O'Brien,H.P., Aguilar,G.H. and Jarvis,J.U.M. TITLE Direct Submission JOURNAL Submitted (02-JUL-1997) Conservation Genetics Group, Institute of Zoology, Regent's Park, London NW1 4RY, UK STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF012214 BASE COUNT 273 a 151 c 126 g 167 t 4496 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |-A-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCAAGCCAGU GAGGA---uG C|CCU-Ucaa --au-cg--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---auuc -----)---- 1261 ---------- ---------- --cg--aug- a-aAAGGAGU |--------- GGGUAUCA-- 1321 -AGUUCAC-- -----(acaa aa-------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UAA C|ACCUC-GU --|------- (-aaa--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-UAUGAAC( ---------- ----GAAA)G UUCGA-CUU| 1561 A|-GUCA-U- GC-AAU---a caacua---- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AAUUA-AUAA A-------ca auCGGC|GUA AAGAAUGUuu --aaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u uauaaacaaa acuaag--au -----|UAAA UCUUGU-CUA ----UGUC(G 2341 UAAAA)AAUU AU-------A GACA-AGCCG AAA------- ---cucaaua -aAC(-GCAA 2401 -)GU|a---- ----aucuua ---uaaua-- ---------- ucu-gaacAC AUGAC-AGCU 2461 U-GGG---UA CAAA-----( ---------) ---------| -GCUA-GGC- CGUAAA-CGC 2521 A--AAAU-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a aua(uaac)a a---A-AAAU 2701 U-U|--C|GC CCAGAG--AC UACUAGC(-- -CACG--)GC UAA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUUUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CG AAC-|CUU(A --ACA)AAG- -----(uaa- 3181 aa-)------ a-aGUGAGCA UAA-UCAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aaac- 3781 ---------A UAAAGA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------A 3841 A-A-GU-GG- GA-AGU--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ga ca---)---- ---------- ---------- AAG-AAcauu 4021 uaa------- ------ACGA --AAGCU-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-u-) U-GA-U--AG -C~~~~~~~~ -~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.G.capen 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Georychus capensis. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Georychus capensis. ORGANISM Mitochondrion Georychus capensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M63566 DEFINITION G.capensis 12S rRNA gene, complete sequence. SOURCE G.capensis ribosomal RNA. ORGANISM Georychus capensis Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Hystricomorpha; Bathyergidae. REFERENCE 1 (sites) AUTHORS Allard,M.W. and Honeycutt,R.L. TITLE Nucleotide sequence variation in the mitochondrial 12s rRNA gene and the phylogeny of african mole-rats (rodentia: Bathyergidae) JOURNAL Mol. Biol. Evol. (1991) In press FEATURES Location/Qualifiers rRNA 1..782 /gene="12S rRNA" BASE COUNT 301 a 151 c 130 g 200 t 4431 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ U|GGCUU-UU UUA-UUAAUU -G-UAAG-CA |AA-AU--UA -CAC-A-UGC 721 -AAAa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cUGAGCCAGU GAGAA---UG C|CCU-Uuaa --au-ca--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---ucc- -----)---- 1261 ---------- ---------- --ug--aua- u-aAUGGAGC |--------- gGGUAUCA-- 1321 -AGUACAC-- -----(auua aa-------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UAA C|ACCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-UAUGAAC( ---------- ----GAAA)G UUUGA-CUU| 1561 A|-GUUA-U- GC-AAU---a caauua---- ---------- (--------- ---------- 1621 --------)- ---------- ----|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAA A-------ca u-cGGC|GUA AAGAGUGUu- -uagga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------u--- -uaaaauuua acuaag--au -----|Uaaa uucUAU-UUA ----UGUC(G 2341 UAAAA)AACc ac-------A AAUA-gacuc aaA------- ---cucaaua -aAU(-GUAA 2401 -)GU|a---- ----aucuua ---uuaua-- ---------- ucu-gaacAC ACGAA-AGCU 2461 A-AGA---UU CAAA------ ---------- ---------| -GCUA-AGC- UGUAAA-CAC 2521 A--AAAU-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a aua(gaac)a a---A-ACAU 2701 U-U|--C|GC C-AGAG-GAC UACUAGC(-- -CAUA--)GC UAA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-CC CAUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUACACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUUUUGCC ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --ACA)AAG- -----(aga- 3181 aa-)------ a-aGUAAGCA CAA-UCAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aauc-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------A 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-cg uu---)---- ---------- ---------- AAG-AAcacu 4021 aa-------- ------ACGA --AAACU-AU U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAa-u-) U-AA-U--AG -U--CUAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-gu-- --)GCUUAAU U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.H.argen 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Heliophobius argenteocinereus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Heliophobius argenteocinereus. ORGANISM Mitochondrion Heliophobius argenteocinereus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M63562 DEFINITION H.argenteocinereus 12S rRNA gene, complete sequence. SOURCE H.argenteocinereus ribosomal RNA. ORGANISM Heliophobius argenteocinereus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Hystricomorpha; Bathyergidae. REFERENCE 1 (sites) AUTHORS Allard,M.W. and Honeycutt,R.L. TITLE Nucleotide sequence variation in the mitochondrial 12s rRNA gene and the phylogeny of african mole-rats (rodentia: Bathyergidae) JOURNAL Mol. Biol. Evol. (1991) In press FEATURES Location/Qualifiers rRNA 1..791 /gene="12S rRNA" BASE COUNT 307 a 147 c 125 g 212 t 4422 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ U|AGCUU-UU UUA-UUAGUU -U-AAUG-CG |AA-AU--UA -CAC-A-UGC 721 -AAGa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCAAACCAGU GAAAA---UA C|CCU-Uaaa --au-ca--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---uau- -----)---- 1261 ---------- ---------- --ug--auu- c-gAAGGAGU |--------- uGGUAUCA-- 1321 -AGUACAC-- -----(acca aua------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UUA C|ACCUU-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AC AAGAAUUAAG A-AAUAAAC( ---------- ----GAAA)G UUUGA-CUU| 1561 A|-GUUA-C- GC-AAU---a caauua---- ---------- (--------- ---------- 1621 --------)- ---------- ----|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAA A-------aa c-cGGC|GUA AAGAGUGUu- -uaagu---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------u--- -auaaauuga acuaag--au -----|Uaaa ucuUAU-CUA ----AGUU(G 2341 UAAAA)AACu aau------A GAUA-uuuaa aau------- ---uucaaua -aAC(-GAAA 2401 -)GU|a---- ----aucuua ---uuaaa-- ---------- ccu-gaauAC CCGAC-AGUU 2461 A-AGA---CC CAAA------ ---------- ---------| -GCUU-AACc UAUAAA-CAU 2521 A--AAAU-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ------uacu cau(aaac)a ----A-AUAU 2701 U-U|--C|GC C-AGAG-GAC UACUAGC(-- -CAUG--)GC UAA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUUUUGCU ---------- ---------- 2881 (-------aa uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CU AAC-|CUU(U --AUA)AAG- -----(aac- 3181 aa-)------ a-aGUAAGCA CAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aauc-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu uuc--)---- ---------- ---------- AAG-AAcauu 4021 aaa------- ------ACGA --AAGUC-AC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAa---) UaAUaUu-GA -C--CUAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAGU U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.H.glabe 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Heterocephalus glaber. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Heterocephalus glaber. ORGANISM Mitochondrion Heterocephalus glaber. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M63563 DEFINITION H.glaber 12S rRNA gene, complete sequence. SOURCE H.glaber ribosomal RNA. ORGANISM Heterocephalus glaber Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Hystricomorpha; Bathyergidae. REFERENCE 1 (sites) AUTHORS Allard,M.W. and Honeycutt,R.L. TITLE Nucleotide sequence variation in the mitochondrial 12s rRNA gene and the phylogeny of african mole-rats (rodentia: Bathyergidae) JOURNAL Mol. Biol. Evol. (1991) In press FEATURES Location/Qualifiers rRNA 1..786 /gene="12S" BASE COUNT 292 a 164 c 139 g 191 t 4427 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ U|GGCUU-UU UUA-UUAGUU -U-AGCG-CA |AA-AU--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- -CCCGCCAGU GAGAA---UG C|CCU-Uaaa --au-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uaaac -----)---- 1261 ---------- ---------- --ug--aca- a-aAAGGAGC |--------- gGGUAUCA-- 1321 -AGUACACU- -----(acca ---------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--AGA C|ACCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAA----C-A 1501 GCA|GUA-AU UAAUAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUU| 1561 A|-AUUA-U- GC-GAU---c agacua---- ---------- (--------- ---------- 1621 --------)- ---------- ----|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---A UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAA A-------ac c-cGGC|GUA AAGAGUGUu- -uaggg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--a -aacaaucag acuaag--au -----|Uaaa uucUAU-CUA ----GGUC(G 2341 UAAAA)AACu uc-------A GAUA-agaca aac------c cacuacuauc -uAC(-GAA- 2401 -)GU|a---- ----aucuua ---acaaa-- ---------- ccu-gaacAC ACGAC-AGCU 2461 A-UGG----U CAAA------ ---------- ---------| -GCUU-AGC- CGUAAAaCAU 2521 A--AAAA-AU |AU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- --------ua uaa(caac)a ----A-AUAU 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|ACGGUG- CUUUAAA-CC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGUUA A-ACCUCACC AUUUCUGGCU ---------- ---------- 2881 (-------ac uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CG AAC-|CUC(U --ACA)GGG- -----(gac- 3181 aa-)------ a-aGUAAGCU CAA-GUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uguc-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au ac---)---- ---------- ---------- AAG-AAcaua 4021 a--------- ------ACGA --UAGUU-AC C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-c-) U-GA-U--AA -C--ACAAG- -GUGGAUUUA 4141 G-U--AGUAA A-ACAAGA(- auaga-ga-- --)GCUUGUU U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.typic 5213 bp RNA RNA 10-JAN-1992 DEFINITION Mitochondrion Petromus typicus.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Petromus typicus. ORGANISM Mitochondrion Petromus typicus. REFERENCE 1 (sites) AUTHORS Allard,M.W. and Honeycutt,R.L. TITLE Nucleotide sequence variation in the mitochondrial 12S rRNA gene and the phylogeny of african mole-rats (Rodentia: Bathyergidae) JOURNAL Mol. Biol. Evol. 9, 27-40 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M63571 BASE COUNT 273 a 166 c 139 g 174 t 4461 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~--~~ -~~~-~-~GC 721 -AAGg----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCAUGCCAGU GAGUA---CG C|CCU-Cuag --au-ca--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---uuua -----)---- 1261 ---------- ---------- --ug--auc- a-gAUGGAGU |--------- gGGUAUCA-- 1321 -AGUACAC-- -----(uuaa acaa------ ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--AGA C|ACCCA-GC --|------- (-caa--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG ACA----C-A 1501 GCA|GUA-AU AAAAAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUCGA-CUU| 1561 A|-GUCA-U- AC-AAU---c aa-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -G-U-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUUA-AUAA A-------cc uacGGC|GUA AAGGGUGUu- -uagga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--u -aaccaucau aauaag--au -----|Uaaa uuuUAU-CUA ----AGUU(G 2341 UAGAA)CACu ac-------A GAUA-aaauu aaA-----cu caguuaaccc caAC(-GAAA 2401 -)GU|a---- ----aucuua ---ccaca-- ---------- ucu-gaacAC ACGAA-AACU 2461 A-AGG---CC CAAA------ ---------- ---------| -GCUU-AGU- UGUAAA-CAU 2521 A--GGAU-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(uaac)a ----A-AUAU 2701 C-C|--C|GC C-AGAG-AAC UACAAGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-CC CACCUAGA|G GAGCCUGU-U |UCAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUUACC GCCCCUCGCU ---------- ---------- 2881 (-------aa uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aug- 3181 aa-)------ C-AGUGAGCA UAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----gaaacc 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC CAU------- ---------G 3841 G-G-GC-GG- -G-GAA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-gu u----)---- ---------- ---------- AAG-AAcagu 4021 ucu------- ------ACGA --UUACC-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-c-) U-AA-U--GG -U--CUAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCAUUAU U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.pilor 5213 bp RNA RNA 02-SEP-1994 DEFINITION Mitochondrion Capromys pilorides.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Capromys pilorides. ORGANISM Mitochondrion Capromys pilorides. REFERENCE 1 (bases 1 to 766) AUTHORS Nedbal,M.A., Allard,M.W. and Honeycutt,R.L. TITLE from the Mitochondrial 12S rRNA Gene Molecular Systematics of Hystricognath Rodents: Evidence JOURNAL Mol. Phylogenet. Evol. 3 (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 766) AUTHORS Nedbal,M.A. TITLE Direct Submission JOURNAL Submitted (20-JUL-1994) Michael A. Nedbal, Wildlife and Fisheries, Texas A&M University, Rm 210 Nagle Hall, College Station, TX 77843, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U12443 BASE COUNT 295 a 163 c 124 g 184 t 4447 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~-~-~GC 721 -AAGa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- uCCUUCCAGU GAGAA---UG C|CCU-Ccau --gu-ca--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--acaa- -----)---- 1261 ---------- ---------- ---g--acc- c-aGAGGAGC |--------- gGGUAUCA-- 1321 -AGCACAC-- -----(cuuc a--------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UUA C|ACCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUA-AU UAAAAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- GC-AAC---a uuauaca--- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCU-- 1981 AAUUA-AUAA A--------g ccCGGC|GUA AAGAGUGUua --aaac---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------ua-- ---caaaaac aauaag--au -----|UAAA UUUUAC-CUA ----AGUC(G 2341 UAAAA)AACa ac-------A GAUA-AAAAU AAA------- ----aucaua -aAC(-GAAA 2401 -)GU|a---- ----aucuua ---auaaa-- ---------- ucu-gaauAC ACUAA-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CAA 2521 A--GAUA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(uaac)a a---A-AAUU 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUUACC ACUUCUUGCU ---------- ---------- 2881 (-------aa uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCC(A --ACA)GGG- -----(auu- 3181 aa-)------ A-AGUAAGCA CAA-CUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----acuc-- 3781 ---------G UAAAAA-CGU U-AGGUCAAG G|UGUA|ACU AAU------- ---------G 3841 A-A-GU-GG- AA-AGC--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(cuu cc---)---- ---------- ---------- AAG-AAaaca 4021 aca------- -----acaag --UAAUC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGACAu---) U-AA-A--GA -U--UUAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>--~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.guian 5213 bp RNA RNA 02-SEP-1994 DEFINITION Mitochondrion Cavia guianae.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Cavia guianae. ORGANISM Mitochondrion Cavia guianae. REFERENCE 1 (bases 1 to 765) AUTHORS Nedbal,M.A., Allard,M.W. and Honeycutt,R.L. TITLE Molecular Systematics of Hystricognath Rodents: Evidence from the Mitochondrial 12S rRNA Gene JOURNAL Mol. Phylogenet. Evol. 3 (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 765) AUTHORS Nedbal,M.A. TITLE Direct Submission JOURNAL Submitted (20-JUL-1994) Michael A. Nedbal, Wildlife and Fisheries, Texas A&M University, Rm 210 Nagle Hall, College Station, TX 77843, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U12449 BASE COUNT 273 a 172 c 145 g 175 t 4448 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~--~~ -~~~-~-~GA 721 -CAAa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cUACACCGGU GAGAA---UG C|CCU-Cugu --ac-ca--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-cacuu- -----)---- 1261 ---------- ---------- --ag--guu- u-aAAGGAGC |--------- gGACAUCA-- 1321 -AGCACAC-- -----(ugcu aa-------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--CGA C|GUCUU-GC --|------- (-uuu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGA----C-A 1501 GCA|GUA-AU AAAAAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUCA-U- GC-AGC---a auca------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -GAC-CCU-- 1981 AGUUA-AUAA A--------u ccCGGC|GUA AAAAGUGUuu --ugga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -acuauaaaa aauaag--ac -----|UAAU CCUUGU-CUA ----AGUU(G 2341 UAGAA)AACu cu-------A GACA-CGGua gaA------- ----accaua -aAC(-GAAA 2401 -)GU|a---- ----guuuua ---auaag-- ---------- ucc-ga-cAC ACGAA-AGCU 2461 A-AGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CAC 2521 A--AAAA-CU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ca(uaac)a a---A-AGAU 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-CC CGCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC UCUCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CC AAC-|CCU(A --UUA)UGG- -----(aaa- 3181 ca-)------ a-aGUGAGCG CAA-GUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----acuac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------G 3841 G-A-GA-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ac cc---)---- ---------- ---------- AAG-AAcauu 4021 aa-------- ------ACGC --AAAUC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-u-) C-aa-a--GA -U--CUAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UCAAGA(- auaga-ga-- --)GCUUGAU U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.porce 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Cavia porcellus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Cavia porcellus. ORGANISM Mitochondrion Cavia porcellus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L35585 LOCUS GPIRRTR 2647 bp ds-DNA ROD 31-DEC-1994 DEFINITION Cavia porcellus transfer RNA-Phe (tRNA-Phe); 12S ribosomal RNA (12S rRNA); transfer RNA-Val (tRNA-Val); 16S ribosomal RNA (16S rRNA); transfer RNA-Leu (tRNA-Leu). ACCESSION L35585 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; transfer RNA-Phe; transfer RNA-Val. SOURCE Cavia porcellus DNA. ORGANISM Cavia porcellus Eukaryota; Animalia; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Hystricomorpha; Caviidae; Caviinae. REFERENCE 1 (bases 1 to 2647) AUTHORS Frye,M.S. and Hedges,S.B. TITLE Monophyly of the order rodentia inferred from mitochondrial DNA sequences of the genes for 12S rRNA, 16S rRNA, and tRNA-valine JOURNAL Mol. Biol. Evol. (1994) In press STANDARD full automatic COMMENT NCBI gi: 607017 FEATURES Location/Qualifiers source 1..2647 /organism="Cavia porcellus" /sequenced_mol="DNA" tRNA 1..28 /gene="tRNA-Phe" /note="putative" /product="transfer RNA-Phe" rRNA 29..933 /gene="12S rRNA" /note="putative" /product="12S ribosomal RNA" tRNA 934..997 /gene="tRNA-Val" /note="putative" /product="transfer RNA-Val" rRNA 998..2590 /gene="16S rRNA" /note="putative" /product="16S ribosomal RNA" tRNA 2591..2647 /partial /gene="tRNA-Leu" /note="putative" /product="transfer RNA-Leu" BASE COUNT 957 a 539 c 473 g 667 t 11 others ORIGIN BASE COUNT 317 a 200 c 170 g 213 t 4313 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---nnnnnnn 661 (nnn-)n-nn C|GGCCn-UU UUA-UUAGCU -G-UCUG-CA |GG-AU--UA -UAC-A-UGC 721 -AAAa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cUACACCGGU GAGAA---UG C|CCU-Augu --ac-ca--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cacuc-- -----)---- 1261 ---------- ---------- --ag--guu- u-aAAGGAGC |--------- aGACAUCA-- 1321 -AGCACACU- -----(gcua ---------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--CGA C|GUCUU-GC --|------- (-uuu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAA----C-A 1501 GCA|GUA-AU AAAAAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- GC-AGC---a cuua------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -GAC-CCU-- 1981 AGUUA-AUAA A--------n ccCGGC|GUA AAAAGUGUUU ---ugg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- aaauauaaaa aauaag--gc -----|UAAU CUUUGU-CUA ----AGUU(G 2341 UAGAA)AACU CU-------A GACA-UGGuA GAA------- ----aucaua -aAC(-GAAA 2401 -)GU|a---- ----gcuuua ---auaagu- ---------- ccg---acAC ACGAA-AGCU 2461 A-AGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CAU 2521 A--AANA-CU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ua(caac)a a---A-AGau 2701 U-U|--C|GC C-AnAn-AAC UACUAGC(-- -AAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC UCUCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CC AAC-|CCC(A --UUA)UGG- -----(aaa- 3181 ca-)------ A-AGUGAGCG CAA-GUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----acuac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------G 3841 G-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ac cc---)---- ---------- ---------- AAG-AAcauu 4021 aa-------- ------ACGC --aaAUC-uu u-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-u-) CAAG-A--UC -U--AAGGG- -AGGGAUUUA 4141 G-U--AGUAA --UUAAGA(- auaga-ga-- --)GCUUGAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUA--GGCC 4261 AUGAAG-CA- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaguau--- 4381 ---------- ---ccaaggg uuu--uguac --aaacuaau aa-------- -----auauu 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAn-n nnn-nn(nnn 4621 -n)nnn-nn- nnnnnnnnnn nn-------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.lanig 5213 bp RNA RNA 02-SEP-1994 DEFINITION Mitochondrion Chinchilla laniger.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Chinchilla laniger. ORGANISM Mitochondrion Chinchilla laniger. REFERENCE 1 (bases 1 to 762) AUTHORS Nedbal,M.A., Allard,M.W. and Honeycutt,R.L. TITLE from the Mitochondrial 12S rRNA Gene Molecular Systematics of Hystricognath Rodents: Evidence JOURNAL Mol. Phylogenet. Evol. 3 (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 762) AUTHORS Nedbal,M.A. TITLE Direct Submission JOURNAL Submitted (20-JUL-1994) Michael A. Nedbal, Wildlife and Fisheries, Texas A&M University, Rm 210 Nagle Hall, College Station, TX 77843, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U12445 BASE COUNT 286 a 179 c 129 g 168 t 4451 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~-~-~GC 721 -AAGg----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- --------cu c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCAAUCCAGU GAGAA---UG U|CCU-Uaag --gu-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--ucuc- -----)---- 1261 ---------- ---------- ------aag- u-cAAAGAAC |--------- aGGUAUCA-- 1321 -GGUGCACu- -----(cacc ---------- ---------- ---------- ------)--- 1381 --aGU|---A GCCCA--CAA C|ACCUU-GU --|------- (-aaa--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( -ACG-)--GG ACA----C-A 1501 GCA|GUA-AU UAAACUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-C- GC-AAC---a cacca----- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AACUA-AUAA A--------c ucCGGC|GUA UAGAGUGUuu --uaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------ac-- ---aauaaac aauaag--au -----|UAAA CUUUAU-UUA ----AGUU(G 2341 UAAAA)GACu cu-------A AAUA-AAAGU AAA------- ---cccaaca -aAC(-GAA- 2401 -)GU|a---- ----aucuua ---accca-- ---------- ucu-gaacAC ACGAA-AGCU 2461 A-CGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CAU 2521 A--AAAA-CU |CC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(caac)a a---A-AGUU 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CACCUAGA|G GGGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUUACC ACUUCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCC(U --ACA)UGG- -----(aac- 3181 aaa)------ A-AGUAAGCA CAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cccc-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-A-GU-GG- AA-AGA--AA -UGGGCCACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ac c----)---- ---------- ---------- AAG-AAaauu 4021 aauua----- ------aCGA --CAGUC-AC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-u-) U-AG-A--GA -U--CUAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAGU U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>--~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.boliv 5213 bp RNA RNA 02-SEP-1994 DEFINITION Mitochondrion Ctenomys boliviensis.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Ctenomys boliviensis. ORGANISM Mitochondrion Ctenomys boliviensis. REFERENCE 1 (bases 1 to 769) AUTHORS Nedbal,M.A., Allard,M.W. and Honeycutt,R.L. TITLE Molecular Systematics of Hystricognath Rodents: Evidence from the Mitochondrial 12S rRNA Gene JOURNAL Mol. Phylogenet. Evol. 3 (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 769) AUTHORS Nedbal,M.A. TITLE Direct Submission JOURNAL Submitted (20-JUL-1994) Michael A. Nedbal, Wildlife and Fisheries, Texas A&M University, Rm 210 Nagle Hall, College Station, TX 77843, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U12446 BASE COUNT 310 a 153 c 122 g 184 t 4444 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~-~-~GC 721 -AAGa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- uCUGUCCAGU GAAAA---UG C|CCU-Uuaa --au-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--acaa- -----)---- 1261 ---------- ---------- ---a--auc- a-aAAGGAGC |--------- uGAUAUCA-- 1321 -AGCACACc- -----(aau- ---------- ---------- ---------- ------)--- 1381 --gGU|---A GCUCA--UAA C|AUCUU-GC --|------- (-cca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUA-AU UAAAAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AU-AAC---a aauaaaa--- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCU-- 1981 AAUUA-AUAA A--------a ccCGGC|GUA AAGAGUGUua --aaau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------ua-- -auaaaucaa aauaag--au -----|UAAA UUUCAU-CUA ----AGUU(G 2341 UAAAA)AACu au-------A GACA-AAAAU AAA------- ----accaug -cAC(-GAAA 2401 -)GU|a---- ----aucuua ---uuaua-- ---------- auu-aaacAC ACUAA-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CAA 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(aaac)a a---A-AAUG 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGUUA C-ACCUCACC ACCCCUUGCU ---------- ---------- 2881 (-------aa uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --ACA)AGG- -----(aua- 3181 aa-)------ A-AGUAAGCA UAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----auac-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------G 3841 G-A-GU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----c>(auu aca-a)---- ---------- ---------- AAG-AAuauu 4021 a--------- ------aCGG --UGAUC-UC U-A(------ ---------- ---------- 4081 ---------- ---------- UGUAAc-c-) U-AA-A--GA -U--UUAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>--~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Di.punc 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Diploptera punctata.; . ACCESSION U17781 KEYWORDS . SOURCE Mitochondrion Diploptera punctata. ORGANISM Mitochondrion Diploptera punctata. REFERENCE 1 (bases 1 to 424) AUTHORS Kambhampati,S. TITLE sequence of mitochondrial ribosomal RNA genes A phylogeny of cockroaches and related insects based on DNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 424) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17781 NCBI gi: 623279 BASE COUNT 146 a 51 c 81 g 146 t 4789 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCAA-UUAU| --UUA-UAA- u--------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaaa)a a--------- 2701 a-u|-ua|UG C-UGAG-UAG UAAUAGU(-- -uaug-g)AC UUG--AAACU UAAAGAAU-U 2761 UG|GCGGUA- UCUUAG--UC UAUUUAGA|G GAAUCUGA-C |CCGUA--AU CG(AUAGUCG 2821 A--------- ----)CGUUA A-ACCUUACU UAAGUCUAU- ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------GGU UUG-UA|UA- 3121 |CC|-GC--C |G------UA UA-UG|a-aa auc-|uuu(u --ua-)gag- -----(---- 3181 ---)------ --ugauuuuc uagagauuu- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ------uau- 3781 -------a-g auaguA-UUU C-AGGUCAAG G|UGCA|GUU UAU------- ---------A 3841 U-U-UA-AG- -U-GGC--GA -UGGAUUACA AU--au---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----g>(aaa uua--)---- ---------- ---------- ----guuaa- 4021 ---------- ------ACGG --AAUAU-AG A-A(------ ---------- ---------- 4081 ---------- ---------- uuaaau---) A-UU-U--AU -A--UAAAG- -GUGGAUUUA 4141 A-U--AGUAA U-GUUAUA(- -uaga-cu-- --)AUUAACU U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCU 4261 CUAGGA-UG- UGCACACA-U -CGCCCGUCA C-UCU--CGC U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(auaa--)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- GGUG-AGA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Pr.long 5213 bp RNA RNA 02-SEP-1994 DEFINITION Mitochondrion Proechimys longicaudatus.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Proechimys longicaudatus. ORGANISM Mitochondrion Proechimys longicaudatus. REFERENCE 1 (bases 1 to 767) AUTHORS Nedbal,M.A., Allard,M.W. and Honeycutt,R.L. TITLE Molecular Systematics of Hystricognath Rodents: Evidence from the Mitochondrial 12S rRNA Gene JOURNAL Mol. Phylogenet. Evol. 3 (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 767) AUTHORS Nedbal,M.A. TITLE Direct Submission JOURNAL Submitted (20-JUL-1994) Michael A. Nedbal, Wildlife and Fisheries, Texas A&M University, Rm 210 Nagle Hall, College Station, TX 77843, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U12447 BASE COUNT 287 a 165 c 127 g 188 t 4446 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~--~~ -~~~-~-~GC 721 -AAGa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------guc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- uCACUCCUGU GAGAA---UG C|CCU-Acaa --au-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---uau- -----)---- 1261 ---------- ---------- --ag--auc- c-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACAC-- -----(ccac g--------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UAA C|ACCUU-GC --|------- (-uuu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACA----C-A 1501 GCA|GUA-AC UAAAAUUAAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- GC-CAU---u cuuauucuaa ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -G-U-CA)-U ACGAUU|--- -AAC-CCU-- 1981 AAUUA-AUAA A--------u uuCGGC|GUA AAGAGUGUua --aaaa---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- --cuaaacaa aauaag--ac -----|UAAA UUUUAC-CCA ----AGUC(G 2341 UAAAA)AACA UC-------A GGUA-AAAac aaG------- ----cccguu -aAC(-GAAA 2401 -)GU|a---- ----gucuua ---auaau-- ---------- cau-gaaaAC ACCAA-AGCU 2461 G-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CAC 2521 A--AAUA-UU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(uaac)a a---A-AAUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -UACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAAA-CC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUCUCGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU UUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCC(C --ACA)GGG- -----(aau- 3181 ua-)------ a-aGUAAGCA CAA-UUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uauc-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC AAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu ac---)---- ---------- ---------- AAG-AAcaca 4021 uaca------ ------ACAG --UUACC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAa-u-) U-aa-g--GG -U--UUAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- acaga-ga-- --)GCUUAAU U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.E.dorsa 5213 bp RNA RNA 02-SEP-1994 DEFINITION Mitochondrion Erethizon dorsatum.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Erethizon dorsatum. ORGANISM Mitochondrion Erethizon dorsatum. REFERENCE 1 (bases 1 to 773) AUTHORS Nedbal,M.A., Allard,M.W. and Honeycutt,R.L. TITLE Molecular Systematics of Hystricognath Rodents: Evidence from the Mitochondrial 12S rRNA Gene JOURNAL Mol. Phylogenet. Evol. 3 (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 773) AUTHORS Nedbal,M.A. TITLE Direct Submission JOURNAL Submitted (20-JUL-1994) Michael A. Nedbal, Wildlife and Fisheries, Texas A&M University, Rm 210 Nagle Hall, College Station, TX 77843, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U12450 BASE COUNT 285 a 163 c 134 g 191 t 4440 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~--~~ -~~~-~-~GC 721 -AAAc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCGCACCAGU GAGAA---CG C|CCU-Uuaa --au-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-u-auaa -----)---- 1261 ---------- ---------- --ag--aca- a-gAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACGC-- -----(caac a--------- ---------- ---------- ------)--- 1381 ---GC|---A GCUCA--CGA C|AUCUC-GC --|------- (-uuu--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCcu--( CACG-)--GG AAA----C-A 1501 GCA|GUA-AU AAAAAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- GC-UUC---a acucuuuaau cuua------ ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---A UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAA A-------ca caCGGC|GUA AAA-GUGUuu -uaggg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -aagaccgaa aauaag--ac -----|UAAA CUUCAU-CUA ----AGUC(G 2341 UAAAA)AACu uu-------A GAUA-AAUuu aaA------- ----aucaca -aAC(-GAAA 2401 -)GU|a---- ----accuua ---auuua-- ---------- ccu-gaacAC ACGAA-AGCU 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AAC- UAUAAA-CAU 2521 A--AAAA-UU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(caac)a a---A-AAUU 2701 U-U|--U|GC C-AGAG-GAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|ACGGUG- CUU-ACA-CC CAUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUU U-ACCUCACC GUUUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU UUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-UA|G-CA AAC-|CCA(A --UUA)UGG- -----(aau- 3181 ua-)------ a-aGUAAGCA CAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaac-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 A-A-AC-GG- GA-AGC--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua u----)---- ---------- ---------- AAG-AAaauu 4021 auuu------ ------ACGG --CAACC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-UC-G--GG -U--CUAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.H.hyd.1 5213 bp RNA RNA 02-SEP-1996 DEFINITION Mitochondrion Hydrochaeris hydrochaeris.; . ACCESSION U61081 KEYWORDS . SOURCE Mitochondrion Hydrochaeris hydrochaeris. ORGANISM Mitochondrion Hydrochaeris hydrochaeris. REFERENCE 1 (bases 1 to 1020) AUTHORS Springer,M.S. and Douzery,E. TITLE mitochondrial 12S rRNA molecules Secondary structure and patterns of evolution among mammalian JOURNAL J. Mol. Evol. 43 (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 1020) AUTHORS Springer,M.S. TITLE Direct Submission JOURNAL Submitted (17-JUN-1996) University of California, Biology, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U61081 BASE COUNT 362 a 201 c 168 g 220 t 4262 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aacAGGUU 661 (UGG-)U-CC U|GGCCU-UU UUA-UUAGUU -G-CUUA-CA |GA-AU--UA -UAC-A-UGC 721 -AAGa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------guc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- uCGCCCCGGU GAAAA---UG C|CCU-Cuaa --ac-ca--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--caua- -----)---- 1261 ---------- ---------- --cg--gau- a-aAAGGAGC |--------- GGGUAUCA-- 1321 -GGCGCAC-- -----(acca caaa------ ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--UAA C|ACCUU-GC --|------- (-uuc--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( UACG-)--GG AGA----C-A 1501 GCA|GUA-AC AAAAAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUCA-U- GU-AGC---u auuaa----- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUAA A-------cu ucCGGC|GUA AAAAAUGUuu ---uag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- agauauaaaa aauaag--au -----|UAAA CUCUAU-CUA ----AGUU(G 2341 UAAAA)AACA CC-------A GAUA-AAAUG UAA------- ----gucaau -aAC(-GAAA 2401 -)GU|a---- ----aucuua ---auaccu- ---------- cug--aauAC AUGAA-AGCU 2461 A-AGG---CU CAAACUGGG( AUUAGAUGC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CAU 2521 A--AAAG-UU |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ca(uaac)a a---G-AACU 2701 U-U|--C|GC C-CGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC ACUUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCA(A --UCA)UGG- -----(caa- 3181 ca-)------ A-AGUAAGCA CAA-ACAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---auuac-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU AAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ac ca---)---- ---------- ---------- AAG-AAcaua 4021 a--------- ------ACGU --AAAUC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAC-C-) U-AA-A--GA -U--AGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUA--GGCA 4261 AUGAAG-CA- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaauaccc- 4381 -------aaa aauuuaaa-- aau--caaaa --auua-aca aa-------- ------uaug 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAaa- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.H.hyd.2 5213 bp RNA RNA 02-SEP-1994 DEFINITION Mitochondrion Hydrochaeris hydrochaeris.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Hydrochaeris hydrochaeris. ORGANISM Mitochondrion Hydrochaeris hydrochaeris. REFERENCE 1 (bases 1 to 769) AUTHORS Nedbal,M.A., Allard,M.W. and Honeycutt,R.L. TITLE Molecular Systematics of Hystricognath Rodents: Evidence from the Mitochondrial 12S rRNA Gene JOURNAL Mol. Phylogenet. Evol. 3 (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 769) AUTHORS Nedbal,M.A. TITLE Direct Submission JOURNAL Submitted (20-JUL-1994) Michael A. Nedbal, Wildlife and Fisheries, Texas A&M University, Rm 210 Nagle Hall, College Station, TX 77843, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U12454 BASE COUNT 296 a 164 c 133 g 176 t 4444 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~--~~ -~~~-~-~GC 721 -AAGa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------guc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- uCGCCCCGGU GAAAA---UG C|CCU-Cuaa --ac-ca--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---caua -----)---- 1261 ---------- ---------- --cg--gau- a-aAAGGAGC |--------- gGGUAUCA-- 1321 -GGCGCAC-- -----(acca caaa------ ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--UAA C|ACCUU-GC --|------- (-uuc--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( uACG-)--GG aga----C-A 1501 GCA|GUA-AC AAAAAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUCA-U- GU-AGC---u auuaa----- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUAA A-------cu ucCGGC|GUA AAAAAUGUu- -uuaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------ga-- ---uauaaaa aauaag--au -----|Uaaa cucUAU-CUA ----AGUU(G 2341 UAAAA)AACa cc-------A GAUA-aaaug uaA------- ----gucaau -aAC(-GAAA 2401 -)GU|a---- ----aucuua ---auacc-- ---------- ucu-gaauAC AUGAA-AGCU 2461 A-AGA---CU CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CAU 2521 A--AAAG-UU |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ca(uaac)a a---G-AACU 2701 U-U|--C|GC C-CGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGACuu 2761 gg|ACGGUG- CUUUAUA-UC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC ACUUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCA(A --UCA)UGG- -----(caa- 3181 ca-)------ a-aGUAAGCA CAA-ACAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----auuac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU AAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ac ca---)---- ---------- ---------- AAG-AAcaua 4021 a--------- ------ACGU --AAAUC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-aa-a--GA -U--AGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Ath.mac 5213 bp RNA RNA 02-SEP-1994 DEFINITION Mitochondrion Atherurus macrourus.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Atherurus macrourus. ORGANISM Mitochondrion Atherurus macrourus. REFERENCE 1 (bases 1 to 768) AUTHORS Nedbal,M.A., Allard,M.W. and Honeycutt,R.L. TITLE from the Mitochondrial 12S rRNA Gene Molecular Systematics of Hystricognath Rodents: Evidence JOURNAL Mol. Phylogenet. Evol. 3 (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 768) AUTHORS Nedbal,M.A. TITLE Direct Submission JOURNAL Submitted (20-JUL-1994) Michael A. Nedbal, Wildlife and Fisheries, Texas A&M University, Rm 210 Nagle Hall, College Station, TX 77843, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U12451 BASE COUNT 288 a 164 c 135 g 181 t 4445 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~-~-~GC 721 -GAGg----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCUAACCGGU GAGAA---UA C|CCU-Uuaa --au-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-cacau- -----)---- 1261 ---------- ---------- -ugg--auu- a-aAAGGAGU |--------- gGGUAUCA-- 1321 -AGCACAGcu -----(ugcg ---------- ---------- ---------- ------)--- 1381 -aaGU|---A GCUCA--UUA C|ACCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-UCCC--( CACG-)--GA AAC---aC-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUU| 1561 A|-GUUA-U- GC-UAA---- uuca------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-UCA-- 1981 AAUUA-AUGG G-------aa acCGGC|GUA AAACGUGUuu --uaaa---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------ga-- --uaaaaacu aauaag--au -----|UAAG UUCUAU-UUA ----GGUC(G 2341 UAAAA)AACu uc-------A AAUA-GUUAC AAA------- ---accaaua -cGC(-GAAA 2401 -)GC|a---- ----aucuca ---auaac-- ---------- uuu-gaacAC ACGAC-AUCU 2461 A-AGA---CU CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGA- CGUAAA-CAU 2521 A--AAAA-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(uaac)a a---A-AUUU 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-AC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUCUUGCU ---------- ---------- 2881 (-------aa uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC UUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --ACA)AGG- -----(aaa- 3181 aa-)------ A-AGUAAGCA CAA-GUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----acac-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-A-GU-GG- GA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ac c----)---- ---------- ---------- AAG-AAcauc 4021 ca-------- -------CGA --CAAUC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAa-c-) U-GA-A--GA -U--CCAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-gc-- --)GCUUAAU U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>--~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Hys.afr 5213 bp RNA RNA 02-SEP-1994 DEFINITION Mitochondrion Hystrix africaeaustralis.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Hystrix africaeaustralis. ORGANISM Mitochondrion Hystrix africaeaustralis. REFERENCE 1 (bases 1 to 765) AUTHORS Nedbal,M.A., Allard,M.W. and Honeycutt,R.L. TITLE from the Mitochondrial 12S rRNA Gene Molecular Systematics of Hystricognath Rodents: Evidence JOURNAL Mol. Phylogenet. Evol. 3 (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 765) AUTHORS Nedbal,M.A. TITLE Direct Submission JOURNAL Submitted (20-JUL-1994) Michael A. Nedbal, Wildlife and Fisheries, Texas A&M University, Rm 210 Nagle Hall, College Station, TX 77843, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U12448 BASE COUNT 284 a 155 c 138 g 188 t 4448 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~--~~ -~~~-~-~GC 721 -GAGg----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------aau c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCUUACCGGU GAGA----UA C|CCU-Uuua --au-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-aauaua -----)---- 1261 ---------- ---------- --gg--auu- a-aAAGGAGU |--------- aGGUAUCA-- 1321 -AGCACAC-- -----(uuau aa-------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--CUA C|ACCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-UCCC--( CACG-)--GA AAU---aC-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUU| 1561 A|-GUUA-U- GC-UAA---u aua------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-UCA-- 1981 AAUUA-AUGG A-------aa acCGGC|GUA AAGCGUGUuu --uaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------aa-- --uaaaaauu aaugag--au -----|UAAG UUCUAU-CUA ----GGUC(G 2341 UAAAA)AACu cc-------A GAUU-GAUac aaA------- ----accagu acGC(-GAAA 2401 -)GC|a---- ----aucuca ---auaau-- ---------- ucu-gaauAC ACGAU-ACCU 2461 A-AGA---CU CAAACUGGG( AUUAGAUAC) CCCA-UUAU| -GCUU-AGG- CGUAAA-CAC 2521 A--AAAA-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(uaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-AC CAUCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 C--------- ----)CGAUA A-ACCUUACC ACUCCUUGCU ---------- ---------- 2881 (-------aa uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC UUA-UA|UA- 3121 |CC|-GC--C |A------UC UC-CA|G-CA AAC-|CCU(A --ACA)AGG- -----(aac- 3181 aa-)------ a-aGUAAGCG CAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----gcac-- 3781 ---------G UAAAUA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 G-A-GU-GG- GA-AGA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ac c----)---- ---------- ---------- AAG-AAuaua 4021 u--------- ------ACGA --CAAUC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAa-u-) U-aa-a--GA -U--CCAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-gc-- --)GCUUAAU U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.coypu 5213 bp RNA RNA 02-SEP-1994 DEFINITION Mitochondrion Myocastor coypus.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Myocastor coypus. ORGANISM Mitochondrion Myocastor coypus. REFERENCE 1 (bases 1 to 761) AUTHORS Nedbal,M.A., Allard,M.W. and Honeycutt,R.L. TITLE from the Mitochondrial 12S rRNA Gene Molecular Systematics of Hystricognath Rodents: Evidence JOURNAL Mol. Phylogenet. Evol. 3 (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 761) AUTHORS Nedbal,M.A. TITLE Direct Submission JOURNAL Submitted (20-JUL-1994) Michael A. Nedbal, Wildlife and Fisheries, Texas A&M University, Rm 210 Nagle Hall, College Station, TX 77843, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U12444 BASE COUNT 291 a 154 c 130 g 184 t 4454 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~--~~ -~~~-~-~GC 721 -AAGa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------guc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|u cAUUCCAUGU GAGA----UG C|CCA-Ucaa --au-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---aaca -----)---- 1261 ---------- ---------- ---g--auc- u-aAAGGAGC |--------- uGGUAUCA-- 1321 -AGCACAC-- -----(auaa ca-------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--CAA C|ACCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUA-AU CAAAAUUAAG C-UAUAAAC( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-GUCA-U- GC-AAU---u ucuuaua--- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCU-- 1981 GAUUA-AUAA A--------c ccCGGC|GUA AAGAGUAUua --aaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -uacaauaaa aauaag--au -----|UAAA UUUCAU-CUG ----GGUC(G 2341 UAAAA)AACU AU-------A GAUA-AAAau aaA------- ----aucgau -aAC(-GAAG 2401 -)GU|a---- ----aucuua ---auaua-- ---------- uca-gaauAU ACUAA-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGU- UGUAAA-CAC 2521 A--GAUU-CU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(caac)a a---A-AAUA 2701 U-C|--C|GC C-AGAG-AAG UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAAA-CC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUCUCGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCC(A --ACA)GGG- -----(auu- 3181 aa-)------ a-aGUAAGCA CAA-CGAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cauc-- 3781 ---------A U-AAAA-NGU U-AGGUCAAG G|UGUA|GCC AAA------- ---------N 3841 A-A-GU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- AAG-AAcauc 4021 ua-------- ------ACAG --UAAUC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-aa-g--GA -U--UUAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUGAU U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.O.degus 5213 bp RNA RNA 02-SEP-1994 DEFINITION Mitochondrion Octodon degus.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Octodon degus. ORGANISM Mitochondrion Octodon degus. REFERENCE 1 (bases 1 to 761) AUTHORS Nedbal,M.A., Allard,M.W. and Honeycutt,R.L. TITLE Molecular Systematics of Hystricognath Rodents: Evidence from the Mitochondrial 12S rRNA Gene JOURNAL Mol. Phylogenet. Evol. 3 (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 761) AUTHORS Nedbal,M.A. TITLE Direct Submission JOURNAL Submitted (20-JUL-1994) Michael A. Nedbal, Wildlife and Fisheries, Texas A&M University, Rm 210 Nagle Hall, College Station, TX 77843, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U12452 BASE COUNT 290 a 165 c 127 g 177 t 4454 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~--~~ -~~~-~-~GC 721 -AAAa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- uCAAACCUGU GAGAA---UG C|CCU-Ccaa --au-cg--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---cauc -----)---- 1261 ---------- ---------- --gg--acc- u-aGAGGAGC |--------- uGGUAUCA-- 1321 -AGCACAC-- -----(uacc ---------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UGA C|ACCCC-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUA-AU UAAAAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AU-AAC---a acuaa----- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCU-- 1981 AAUUA-AUAA A--------c ccCGGC|GUA AAGAGUGUu- -aaaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------ca-- ---aaacuaa aauaag--au -----|UAAA GUUUAC-CCA ----AGUC(G 2341 UAAAA)AACu ac-------A GGUA-AAAaa uan------- ---nuccaca -uAC(-GAA- 2401 -)GU|u---- ----aucuua ---guaca-- ---------- ccu-gaauGC ACUAA-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CAC 2521 A--GACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(caac)a a---A-AAUG 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AUA)AGG- -----(aaa- 3181 aa-)------ a-aGUAAGCA CAA-AUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----acuc-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU AAU------- ---------G 3841 A-A-GU-GG- UA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(acc uu---)---- ---------- ---------- AAG-AAuauu 4021 a--------- ------ACAG --UAAUC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-c-) U-aa-a--GA -U--UUAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUA-U U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.T.swind 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Thryonomys swinderianus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Thryonomys swinderianus. ORGANISM Mitochondrion Thryonomys swinderianus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M63570 DEFINITION T.swinderianus 12S rRNA gene, complete sequence. SOURCE Mitochondrion Thryonomys swinderianus (chromosome Mitochondrion Thryonomys swinderianus) liver DNA. ORGANISM Mitochondrion Thryonomys swinderianus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Hystricomorpha; Bathyergidae. REFERENCE 1 (bases 1 to 790) AUTHORS Allard,M.W. and Honeycutt,R.L. TITLE Nucleotide sequence variation in the mitochondrial 12s rRNA gene and the phylogeny of african mole-rats (rodentia: Bathyergidae) JOURNAL Mol. Biol. Evol. (1991) In press FEATURES Location/Qualifiers rRNA 1..790 /gene="12S ribosomal RNA" BASE COUNT 289 a 166 c 136 g 199 t 4423 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ U|GGCUU-UU UUA-UUAGUU -G-UUAG-UA |GC-GU--UA -UAC-A-UGC 721 -A-G------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cau c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- -CCUCCCAGU GAGCA---UG C|CCU-Uuaa --au-ca--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-uaacua aa---)---- 1261 ---------- ---------- --ug--auc- a-aAAGGAGC |--------- gGGCAUCA-- 1321 -AGCACGCUu -----(aaau c--------- ---------- ---------- ------)--- 1381 -AAGC|---A GCUCA--UAA C|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUA-AU AAAAAUUAAG C-aaUAAAC( ---------- ----GAAA)G UUUGAaCUU| 1561 A|-GUCA-U- AC-UAc---u ca-------- ---------- (--------- ---------- 1621 --------)- ---------- ----|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -CAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUAA A-------cu aacGGC|GUA AAGGGUGUu- -uagga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------u-ua -aaaacaaca aauaaa--au -----|Uaag aucUAC-CUG ----GGUU(G 2341 UAAAA)UGCu uc-------A GGUA-aaaua aaA--aucaa cacucccucc -aAC(-GAAA 2401 -)GU|g---- ----auuuua ---gccuu-- ---------- ucu-gaauAC ACGAA-AACU 2461 A-AGG---CC CAAA------ ---------- ---------| -GCUU-AGU- CGUAAA-AAU 2521 A--AAAU-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(uaac)a a---A-AUAU 2701 U-U|--C|GC C-CGAG-AAC UACGAGC(-- -CACu--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-CC CACCUAGA|G GAGCCUGU-U |UUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC AUCUCUUGCU ---------- ---------- 2881 (---u---au aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CG AAC-|CCU(A --AAA)AGG- -----(caa- 3181 aa-)------ a-aGUAAGCA UAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cuaauc 3781 ---------A UGAAAA-CGU U-AGGUCAAG G|UGUA|ACU UAU------- ---------G 3841 A-G-AU-GG- -A-AAA--AA -UGGGCUACA UU--UUCU-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua ac---)---- ---------- ---------- -AG-AAuauc 4021 c--------- ------ACGA --UAAUC-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-U--GA -U--AGAAG- -GCGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (20)-Sciur 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.A.rufa 5213 bp RNA RNA 12-SEP-1996 DEFINITION Mitochondrion Aplodontia rufa.; . ACCESSION U67288 KEYWORDS . SOURCE Mitochondrion Aplodontia rufa. ORGANISM Mitochondrion Aplodontia rufa. REFERENCE 1 (bases 1 to 770) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE Higher level systematics of rodents (Mammalia, Rodentia): evidence from the mitochondrial 12SrRNA gene JOURNAL J. Mammal. Evol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 770) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE Direct Submission JOURNAL Submitted (20-AUG-1996) Wildlife and Fisheries, Texas A&M University, 210 Nagle Hall, College Station, TX 77843-2258, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U67288 BASE COUNT 267 a 187 c 133 g 183 t 4443 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~-~-~GC 721 -AAGa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- uCGCCCCAGU GAAAA---UG C|CCU-Ccuc --ac-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--agcc- -----)---- 1261 ---------- ---------- --ua--gau- a-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACGCu- -----(uaac ucu------- ---------- ---------- ------)--- 1381 --aGC|---A GCUCA--UGA C|ACCUU-GC --|------- (-aca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU UAAAAUUAAG C-UAUAAAU( ---------- ----GAAA)A UUUGA-CUA| 1561 A|-GCUA-U- GC-UAC---u cuca------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCU-- 1981 AGUUA-AUAA u-------uu uaCGGC|GUA AAGCGUGUuu --aaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------uc-- --accaccau aauaag--gu -----|UAAG ACCAAA-CUA ----AGCU(G 2341 UAAAA)AGCC UC-------U AGCU-UCAGU AAA------- ---accccac -cAC(-GAAA 2401 -)GU|a---- ----accuua ---guau--- ---------- ccu-gaaaAC ACGAC-AGCU 2461 A-AGA---CC UAAACUGGG( AUUAGAUAC) CCCA-CUAU| -ACUU-AGC- CCUAAA-CAU 2521 A--AAUU-UU |CC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uau(-aac)a a---G-AAAA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -CAAA--)GC UAA--AAACU CAAAGAAC-U 2761 UG|GCGGUG- CUUUACA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC ACCUUUUGCU ---------- ---------- 2881 (-------aa au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(C --ACA)AGG- -----(aau- 3181 aa-)------ C-AGUAAGCA GGA-GCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuuac- 3781 ---------A UUAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------A 3841 A-G-GU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au ac---)---- ---------- ---------- UAG-AAcacc 4021 ccu------- ------aCAA --CAGUU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--c-) U-AA-A--AG -C--UCAAG- -GCGGAUUUA 4141 G-U--AGUAA G-CUGAAA(- auaga-gu-- --)GUUUAGC U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.canad 5213 bp RNA RNA 12-SEP-1996 DEFINITION Mitochondrion Castor canadensis.; . ACCESSION U67297 KEYWORDS . SOURCE Mitochondrion Castor canadensis. ORGANISM Mitochondrion Castor canadensis. REFERENCE 1 (bases 1 to 774) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE Higher level systematics of rodents (Mammalia, Rodentia): evidence from the mitochondrial 12SrRNA gene JOURNAL J. Mammal. Evol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 774) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE Direct Submission JOURNAL Submitted (20-AUG-1996) Wildlife and Fisheries, Texas A&M University, 210 Nagle Hall, College Station, TX 77843-2258, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U67297 BASE COUNT 285 a 177 c 139 g 173 t 4439 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~-~-~GC 721 -AAAu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gUGCCCCAGU GAGUA---cG C|CCU-Cuaa --gu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--aac-- -----)---- 1261 ---------- ---------- --ag--acc- a-aAAGGAGC |--------- aAGCAUCA-- 1321 -AGCACACa- -----(aaac u--------- ---------- ---------- ------)--- 1381 --uGU|---A GCUAA--UGA C|GCUUU-GC --|------- (-cuu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUA-AU AAAAAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUU| 1561 A|-GUUA-C- AC-UGA---c caca------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---A UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUA|--- -GAC-CCA-- 1981 AACUA-AUAA A--------c ccCGGC|GUA AAGCGUGUuu --aaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------au-- auccacccuc aauaag--ga -----|UAAA CUUGAC-CUA ----AGCU(G 2341 UAAAA)AGCU AU-------A GUUG-AAGAA AAA------- ----auaacc -cAC(-GAAA 2401 -)GU|g---- ----aucuua ---aaauaaa ---------- ucu-gauaAC ACGAC-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CUU 2521 A--GAUA-UG |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a acc(uaac)a a---A-CAUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AAUU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUU C-ACCUCACC AUCUCUUGCU ---------- ---------- 2881 (-------aa gu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AUU)AAG- -----(gca- 3181 cu-)cu---- A-AGUAAGCC AAA-ACAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----acaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------G 3841 A-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-gc ccu--)---- ---------- ---------- AAG-AAaacu 4021 a--------- ------aCGG --AAACU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-GA-A--GA -Ag-AUAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUGAAC(- uuaga-aa-- --)GCUCAAU U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.gundi 5213 bp RNA RNA 12-SEP-1996 DEFINITION Mitochondrion Ctenodactylus gundi.; . ACCESSION U67301 KEYWORDS . SOURCE Mitochondrion Ctenodactylus gundi. ORGANISM Mitochondrion Ctenodactylus gundi. REFERENCE 1 (bases 1 to 759) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE Higher level systematics of rodents (Mammalia, Rodentia): evidence from the mitochondrial 12SrRNA gene JOURNAL J. Mammal. Evol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 759) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE Direct Submission JOURNAL Submitted (20-AUG-1996) Wildlife and Fisheries, Texas A&M University, 210 Nagle Hall, College Station, TX 77843-2258, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U67301 BASE COUNT 295 a 162 c 133 g 169 t 4454 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~-~-~GC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCAAGCCCGU GAAAA---UG C|CCU-Caac --au-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-ucaag- -----)---- 1261 ---------- ---------- --ag--aua- u-aAAGGAGC |--------- cGGUAUCA-- 1321 -AGUACAC-- -----(aauu ---------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--AAA C|ACCUU-GC --|------- (-uaa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAA----C-A 1501 GCA|GUG-AU AAAACUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUCA-U- GC-AUA---a ua-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCU|-GGU 1921 -CAA-C---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUG|--- -AGC-UCU-- 1981 AAUUA-AUAA A--------c uaCGGC|GUA AAGAGUGUuu --aaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------aa-- -uaccaaaua auuaag--ag -----|AAAA CUUAGU-UUA ----AGUC(G 2341 UAAAA)AACC UU-------- AACUaAAG-U AAG------- ----ccagcc -aAC(-GAAA 2401 -)GU|a---- ----cucuua ---uauag-- ---------- ucu-gaauAC ACGAU-AGCU 2461 A-AGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CAA 2521 U--AACA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uac(-aac)a a---A-AAUC 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -CACA--)GC UAA--AAACU CAAAGGAC-U 2761 UG|GCGGCA- CUUCACA-UC CCUCUAGA|G GAGCUUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUAACC ACCUUUUGCU ---------- ---------- 2881 (-------aa au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(C ---CA)AAG- -----(aac- 3181 ag-)------ A-AGUAAGCA AGA-GAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cuacc- 3781 ---------G UUAAAA-AGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------A 3841 A-A-GU-GG- UA-AGA--AA -UGAGCUACA UU--UCUAA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa u----)---- ---------- ---------- UUA-GAaaau 4021 ---------- ------aCGA --AGUCC-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAa-c-) U-AA-A--GG -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.J.jacul 5213 bp RNA RNA 12-SEP-1996 DEFINITION Mitochondrion Jaculus jaculus.; . ACCESSION U67296 KEYWORDS . SOURCE Mitochondrion Jaculus jaculus. ORGANISM Mitochondrion Jaculus jaculus. REFERENCE 1 (bases 1 to 764) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE Higher level systematics of rodents (Mammalia, Rodentia): evidence from the mitochondrial 12SrRNA gene JOURNAL J. Mammal. Evol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 764) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE Direct Submission JOURNAL Submitted (20-AUG-1996) Wildlife and Fisheries, Texas A&M University, 210 Nagle Hall, College Station, TX 77843-2258, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U67296 BASE COUNT 258 a 175 c 148 g 183 t 4449 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~-~-~GC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- CCAUACCAGU GAGAA---uA C|CCU-Uaag -uau-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--aaaa- -----)---- 1261 ---------- ---------- --ug--auu- g-uAAGGAGU |--------- aGGUAUCA-- 1321 -AGCGCAC-- -----(uagc ---------- ---------- ---------- ------)--- 1381 ---GU|---U GCUCA--AGA C|ACCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAA----C-A 1501 GCA|GUG-AU AAAAAUUAGG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CCU| 1561 A|-GUUA-U- AC-UAU---u ca-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 CAUUA-AUGA A-------uu caCGGC|GUA AAGCGUGUuu --agag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------aa-c cccccccccc aauaag--gc -----|UAAA CUCCGA-CUA ----AUAU(G 2341 UAGAA)AUUC AU-------A GUCU-GAAGU AAA------- ----auaaac -uAC(-AAAA 2401 -)GU|g---- ----gucuua ---aaauu-- ---------- cuu-gaagAC ACGAU-AGCU 2461 A-GGG---GA CAAACUGGG( AUUAGAUAC) CCCA-UUAU| -GCCU-AGC- CCUAAA-CAG 2521 A--GAUA-GC |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ac(uaau)a a---G-GCUA 2701 C-C|--C|GC C-AGAG-AAC UACUAGC(-- -AACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CACCUAGA|G GAGCCUGU-U |CUAUA--AC CG(AUACACC 2821 C--------- ----)CGUUC U-ACCUCACC ACUUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CG AAC-|CCU(U --AUA)GGG- -----(aaa- 3181 aa-)------ A-AGUAAGCU CAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uaccc 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU UAU------- ---------G 3841 A-A-GU-GG- AA-AGC--AA -UGGGCUACA UU--UUCUC- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uc uc---)---- ---------- ---------- GAG-AAcaua 4021 ---------- ------aCGA --UACCC-UU C-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-GA-A--GG -A--AUAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- guaga-gu-- --)GCUUAAU U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.cas.1 5213 bp RNA RNA 28-MAR-1997 DEFINITION Mitochondrion Cratogeomys castanops.; . ACCESSION U59172 KEYWORDS . SOURCE Mitochondrion Cratogeomys castanops. ORGANISM Mitochondrion Cratogeomys castanops. REFERENCE 1 (bases 1 to 787) AUTHORS Matthee,C.A. and Robinson,T.J. TITLE Molecular phylogeny of the springhare, Pedetes capensis, based on mitochondrial DNA sequences JOURNAL Mol. Biol. Evol. 14 (1), 20-29 (1997) STANDARD No information REFERENCE 2 (bases 1 to 787) AUTHORS Matthee,C.A. TITLE Direct Submission JOURNAL Submitted (23-MAY-1996) Zoology & Entomology, University of Pretoria, Lynnwood Road, Pretoria, Gauteng 0002, South Africa STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U59172 BASE COUNT 304 a 159 c 139 g 185 t 4426 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~G-UA |AA-AU--UA -CAC-A-UGC 721 -AAAu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gUACCCCAGU Gaauuu--uG C|CCU-Aauu --uc-cg--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--caaau u----)---- 1261 ---------- ---------- --ag--aaa- a-aAAGGAGC |--------- aGGUAUAA-- 1321 -AGCACACUA A----(acga aa-------- ---------- ---------- ------)--- 1381 UUAGU|---A GCUUA--AAA C|ACCAG-GU --|------- (-cca--)-- -------AC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU AAAAAUUAGG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCAA-U- AC-UAA---u ucaa------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCU-- 1981 AGUUA-AUAU C-------aa aaCGGC|GUA AAGAGUGCua -aaaac---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -u--uuacca aauaaa--ac -----|UAAG CCUAAU-UGA ----AGCU(G 2341 UAGAA)AGCA CU-------A AUUA-GAACG AAA------- ---aauacau -cAC(-GAAA 2401 -)GU|a---- ----guuuua ---uaua--- ---------- acu--gcaGC ACUAA-AGCU 2461 AuAUA--gCA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -AAUU-AGC- CAUAAA-CAU 2521 A--AGUA-GA |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uag(uaac)a a---A-UUUA 2701 U-U|--C|GC C-UGAG-AAC UACAAGC(-- -AACC--)GC UAG--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CGUCUAGA|G GAGCCUGU-U |CCGAA--AC CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUUACC ACUUCUUGUU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --ACA)AGG- -----(aac- 3181 au-)------ U-AGUAAGCA AAA-GCUU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --uauaaacu 3781 a--------A UAAAAA-AGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------G 3841 A-A-GU-GG- AG-UGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-cc ag---)---- ---------- ---------- UAG-AAcauc 4021 ---------- ------aCGA --AUUUC-UC U-C(------ ---------- ---------- 4081 ---------- ---------- UAAAAa---) C-AG-A--GA -A--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- -g-ga-ga-- --)GCUUAAU ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.cas.2 5213 bp RNA RNA 12-SEP-1996 DEFINITION Mitochondrion Cratogeomys castanops.; . ACCESSION U67299 KEYWORDS . SOURCE Mitochondrion Cratogeomys castanops. ORGANISM Mitochondrion Cratogeomys castanops. REFERENCE 1 (bases 1 to 777) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE evidence from the mitochondrial 12SrRNA gene Higher level systematics of rodents (Mammalia, Rodentia): JOURNAL J. Mammal. Evol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 777) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE Direct Submission JOURNAL Submitted (20-AUG-1996) Wildlife and Fisheries, Texas A&M University, 210 Nagle Hall, College Station, TX 77843-2258, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U67299 BASE COUNT 299 a 156 c 140 g 182 t 4436 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~-~-~GC 721 -AAAu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gUACCCCAGU GAAUUu--uG C|CCU-Aaau --uu-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(gcaaauu a----)---- 1261 ---------- ---------- --gg--aaa- a-aAAGGAGC |--------- aGGUAUAA-- 1321 -AGCACACua a----(acga aa-------- ---------- ---------- ------)--- 1381 uuaGU|---A GCUUA-AAAA C|ACCAA-GU --|------- (-cca--)-- -------AC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCAA-U- AC-UAA---u uca------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCU-- 1981 AGUUA-AUAC A--------a aaCGGC|GUA AAGAGUGCua --aaaa---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------cu-- ---uuuacca aguaaa--ac -----|UAAA GCCUAA-UUG ----AGCU(G 2341 UAGAA)AGCA CU-------A AUUA-GAACG AAA------- ----auacau -cAC(-GAAA 2401 -)GU|a---- ----guuuua ---uau---- ---------- aac-ugcaGC ACUAA-AGCU 2461 A-UAG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GUAU-AGC- CAUAAA-CAU 2521 A--AAUA-GA |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uag(uaac)a a---A-UUUA 2701 U-U|--C|GC C-UGAG-AAC UACAAGC(-- -AACC--)GC UAG--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CGUCUAGA|G GAGCCUGU-U |CCGAA--AC CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUUACC ACUUCUUGUU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CU AAC-|CCU(A --AAA)AGG- -----(aac- 3181 au-)------ u-AGUAAGCA AAA-GCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --uauaaacu 3781 a--------A UAAAAA-AGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------G 3841 A-A-GU-GG- AG-UGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-cc ag---)---- ---------- ---------- UAG-AAcauc 4021 ac-------- ------gaau --UUCUC-UC U-G(------ ---------- ---------- 4081 ---------- ---------- AAAAA----) C-AG-A--GA -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA G-UUAAAA(- auaga-ga-- --)GUUUAAC U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.G.bursa 5213 bp RNA RNA 12-SEP-1996 DEFINITION Mitochondrion Geomys bursarius.; . ACCESSION U67300 KEYWORDS . SOURCE Mitochondrion Geomys bursarius. ORGANISM Mitochondrion Geomys bursarius. REFERENCE 1 (bases 1 to 778) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE evidence from the mitochondrial 12SrRNA gene Higher level systematics of rodents (Mammalia, Rodentia): JOURNAL J. Mammal. Evol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 778) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE Direct Submission JOURNAL Submitted (20-AUG-1996) Wildlife and Fisheries, Texas A&M University, 210 Nagle Hall, College Station, TX 77843-2258, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U67300 BASE COUNT 290 a 158 c 145 g 185 t 4435 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~-~-~GC 721 -AAAu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GUACCCCGGU GAGUUu--uG C|CCU-Gaau --uu-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(gcaagcu g----)---- 1261 ---------- ---------- --gg--aaa- a-aAAGGAGC |--------- aGGUAUAA-- 1321 -AGCACACUA A----(aacu aaa------- ---------- ---------- ------)--- 1381 UCAGU|---A GCUAA--AAA C|AUCAA-GU --|------- (-cug--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUAA-U- AC-UAA---u cua------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCU-- 1981 AGUUA-AUAC A--------a aaCGGC|GUA AAGAGUGCua -auacc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -c-uuaauca gguaaa--ac -----|UAAA GUCUAA-UUA ----AGCU(G 2341 UAGAA)AGCA CC-------A AUUA-GAGCG AAA------- ----auaaac -cAC(-GAAG 2401 -)GU|g---- ----auuuua ---ucaac-- ---------- acu--gcaGC ACUAA-AGCU 2461 A-UAG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GUAU-AGC- CGUAAA-CUU 2521 A--AAUA-GA |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(uaac)a a---A-UCUA 2701 U-U|--C|GC C-UGAG-GAC UACAAGC(-- -AACU--)GC UUG--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC U-ACCUUACC ACUUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC CU-CA|G-CU AAC-|CCU(A --AAA)AGG- -----(aac- 3181 au-)------ U-AGUAAGCA CAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --uauaaucu 3781 a--------A UAAAAA-AGU U-AGGUUAAG G|UGUA|GCC AAU------- ---------G 3841 A-A-GU-GG- AG-UGA--AA -UGGGCUACA UU--UUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-gu aa---)---- ---------- ---------- CAG-AAcacu 4021 ---------- ------aCGA --AGUUC-UC U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-a-) C-AG-A--GA -A--UGAAG- -GAGGAUUUA 4141 G-A--AGUAA G-UUAAAA(- auaga-gu-- --)GUUUAGC U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.ordii 5213 bp RNA RNA 28-MAR-1997 DEFINITION Mitochondrion Dipodomys ordii.; . ACCESSION U59173 KEYWORDS . SOURCE Mitochondrion Dipodomys ordii. ORGANISM Mitochondrion Dipodomys ordii. REFERENCE 1 (bases 1 to 781) AUTHORS Matthee,C.A. and Robinson,T.J. TITLE based on mitochondrial DNA sequences Molecular phylogeny of the springhare, Pedetes capensis, JOURNAL Mol. Biol. Evol. 14 (1), 20-29 (1997) STANDARD No information REFERENCE 2 (bases 1 to 781) AUTHORS Matthee,C.A. TITLE Direct Submission JOURNAL Submitted (23-MAY-1996) Zoology & Entomology, University of Pretoria, Lynnwood road, Pretoria, Gauteng 0002, South Africa STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U59173 BASE COUNT 285 a 164 c 140 g 192 t 4432 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~G-UA |AA-UU--UA -CAC-A-UGC 721 -AAAu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gUAAGCCAGU Gaguu--uaG C|CCU-Augu --uc-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uaa-- -----)---- 1261 ---------- ---------- ---a--gac- uacAAGGAGC |--------- aAGUAUAA-- 1321 -AGCACGCGU G----(auaa cua------- ---------- ---------- ------)--- 1381 CACGC|---A GCUAA--AAA C|ACUAA-GU --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU AAAAUUUAAG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-UGC---a aaaaca---- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUUA-AUAU U-------uc uaCGGC|GUA AAGAGUGCua --aaau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ----au---- ----uuauga aauaga--gc -----|UAAG ACUUGU-CUU ----GGCU(G 2341 UAAAA)AGCC AA-------A GCCA-AAGUA AAA------- ----accaau -aAC(-GAAA 2401 -)GU|a---- ----acucua ---auu---- ---------- uuu-uguAGC ACUAA-AGCU 2461 A-UUA---CC UAAACUGGG( AUUAGAUAC) CCCA-CUAU| -AAUU-AGC- CAUAAA-CAU 2521 A--AGUA-GU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(uaac)a u---U-ACUA 2701 C-U|--C|GC C-AGAG-AAC UACAAGC(-- -CACC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CACCUAGA|G GAGCCUGU-U |CCAUA--AC CG(AUGAUCC 2821 C--------- ----)CGAUU U-ACCUCACC ACUCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CU AAC-|CCU(A --AA-)AGG- -----(aaa- 3181 ca-)------ A-AGUAAGC- CAA-AUGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --guaauua- 3781 ---------C UAAAGA-AGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 G-A-GU-GG- AG-CGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uc ac---)---- ---------- ---------- UAG-AAcauu 4021 ---------- ------ACGA --AACCC-UA C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-c-) C-AU-A--GG -G--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAAA(- cuaga-ga-- --)GCUUAAU ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Pe.flav 5213 bp RNA RNA 12-SEP-1996 DEFINITION Mitochondrion Perognathus flavus.; . ACCESSION U67298 KEYWORDS . SOURCE Mitochondrion Perognathus flavus. ORGANISM Mitochondrion Perognathus flavus. REFERENCE 1 (bases 1 to 765) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE Higher level systematics of rodents (Mammalia, Rodentia): evidence from the mitochondrial 12SrRNA gene JOURNAL J. Mammal. Evol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 765) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE Direct Submission JOURNAL Submitted (20-AUG-1996) Wildlife and Fisheries, Texas A&M University, 210 Nagle Hall, College Station, TX 77843-2258, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U67298 BASE COUNT 274 a 161 c 140 g 190 t 4448 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~-~-~GC 721 -AAAu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gUAAUCCGGU GAGUAc--aA C|CCU-Gaag --uu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--aug-- -----)---- 1261 ---------- ---------- --ag--aac- a-gAGGGAGU |--------- aGGCCUUA-- 1321 -AGCUCUCu- -----(acau aaauaaauua c--------- ---------- ------)--- 1381 --agA|---U GCUCA--CAA C|GCCAA-GU --|------- (-cua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UUA----C-A 1501 GCA|GUA-AU AAAACUUAAG C-CAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-UGA---c uca------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-C---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAAU|--- -GAC-CCU-- 1981 AGUAA-AUAA A--------c ccCGGC|GUA AAGAGUAUau --auuc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------ca-- -------auu aguaaa--gc -----|UAAA AUUAGG-CUA ----AUCU(G 2341 UAAAA)AGUC UU-------A GCCC-AAAUG AAA------- ----aacuac -cUC(-GAAA 2401 -)GA|g---- ----gcuuua ---uua---- ---------- aac-uauuAU ACUAA-AGCU 2461 A-UAG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GUAU-AGC- CAUAAA-CAU 2521 A--AGCA-GA |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ca(aaac)a a---A-UCUG 2701 C-U|--C|GC C-cGAG-AAC UACUAGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUUACC AUUUCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --AAA)AGG- -----(cug- 3181 ac-)------ A-AGUAAGCU CAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aauau 3781 ---------A UUAAAA-AGU U-AGGUCAAG G|UGUA|ACU UAU------- ---------G 3841 A-A-AU-GG- AA-UGA--AA -UGGGCUACA UU--UUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu u----)---- ---------- ---------- AAG-AAuaca 4021 c--------- -------gaa --ACCCU-GC C-U(------ ---------- ---------- 4081 ---------- ---------- GAAAUa---) G-GC-A--GG -G--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-CUAAAA(- auaga-gu-- --)GUUUAGU U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Mic.niv 5213 bp RNA RNA 01-NOV-1996 DEFINITION Mitochondrion Microtus nivalis.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION X99464 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Microtus nivalis. ORGANISM Mitochondrion Microtus nivalis. REFERENCE 1 (bases 1 to 944) AUTHORS Catzeflis,F.M. Dubois,J.Y., Rakotondravony,D., Hinni,C., Sourrouille,P. and TITLE Molecular relationships of three genera of Nesomyinae, endemic rodent taxa from Madagascar, as deduced from mitochondria JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 944) AUTHORS Dubois,J.Y. TITLE Direct Submission JOURNAL Submitted (14-JUN-1996) J.Y. Dubois, Laboratoire Paleontologie, UMR 5554 CNRS, Institut Sciences Evolution, Universite Montpellier 2, Pl. E. Bataillon, F-34095 Montpellier, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X99464 ADN-numbers are DNA extract numbers from the 'Tissue Collection of Mammals of Montpellier, France' (Catzeflis 1991 Trends Ecol .Evol. 6: 168). BASE COUNT 343 a 206 c 173 g 222 t 4269 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aaaAGGUU 661 (UGG-)U-CC U|GGCCU-UA UAA-UUAGUU -G-GAGG-CA |GA-AU--UA -CAC-A-UGC 721 -AAAc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------guc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aUAAACCAGU GUAGA---AU C|CCA-caga --gu-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--agcc- -----)---- 1261 ---------- ---------- --ua--acu- c-uuAGGAGA |--------- gGGUAUCA-- 1321 -AGUACAU-- -----(aca- ---------- ---------- ---------- ------)--- 1381 ---AU|---A GCUAA--AGA C|ACCUU-GC --|------- (-cua--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG ACU----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCCA-U- GC-CUC---u cuaa------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUUA U--------u acCGGC|GUA AAACGUGUca --cugg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ----aa---- --gcacuaaa aauaga--au -----|AAAA AUCCAU-CCA ----AUAU(G 2341 UGAAA)AUUC AU-------C GCUG-GAccu aaG------- ----accaau -gAC(-GAAA 2401 -)GU|a---- ----auucua ---auuaa-- ---------- ccu--uauGC ACGAU-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 C--AAUA-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- a-a(aaac)a a---A-ACUA 2701 U-U|--U|GC C-UGAG-AAC UACUGGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGUUA U-ACCUCACC ACCCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UU|UU- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(agu- 3181 aa-)------ A-AGUAAGCA AGA-GAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------G 3841 A-G-GU-GG- GA-AGC--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu c----)---- ---------- ---------- AAG-AAcauu 4021 ---------- ------aCGa --UACCC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-A--GG -A--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--AGCA 4261 AUGAAG-UA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaacuaaaua 4381 aacga-aaa- cu-auau-au a-auaaaa-- ucaaac-uuu uacga----- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGA--- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.migra 5213 bp RNA RNA 11-JAN-191 DEFINITION Cricetulus migratorius. ACCESSION No information KEYWORDS No information. SOURCE Cricetulus migratorius. ORGANISM Cricetulus migratorius. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X84389 LOCUS MCM12SRNA 951 bp DNA ROD 01-JUN-1995 DEFINITION C.migratorius mitochondrial 12S ribosomal RNA. ACCESSION X84389 KEYWORDS 12S rRNA; ribosomal RNA. SOURCE Armenian hamster. ORGANISM Cricetulus migratorius Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Glires; Rodentia; Sciurognathi; Myomorpha; Muridae; Cricetinae; Cricetulus. REFERENCE 1 (bases 1 to 951) AUTHORS Hanni,C. TITLE Direct Submission JOURNAL Submitted (03-FEB-1995) to the EMBL/GenBank/DDBJ databases. C. Hanni, Lab Paleontologie URA327 CNRS, Institut Sciences Evolution, Universite Montpellier 2, Pl. E. Bataillon, 34095 Montpellier, FRANCE REFERENCE 2 (bases 1 to 951) AUTHORS Hanni,C., Laudet,V., Barriel,V. and Catzeflis,F.M. TITLE Evolutionary relationships of Acomys and other murids JOURNAL Unpublished COMMENT NCBI gi: 854263 FEATURES Location/Qualifiers source 1..951 /organism="Cricetulus migratorius" /tissue_type="T-325" /clone="CHT3254VF" rRNA 1..951 /product="12S ribosomal RNA" BASE COUNT 335 a 192 c 175 g 249 t ORIGIN BASE COUNT 335 a 192 c 175 g 249 t 4262 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|GGCCU-UA UAA-UUAAUU -G-AAGG-UA |UG-GU--UA -CAC-A-UGC 721 -AAAa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aUGAGCCAGU GUAAA---AU C|CCU-Agg- --gu-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-uguauu -----)---- 1261 ---------- ---------- --aa--acu- c-uAAGGAGA |--------- gGGUAUCA-- 1321 -AGCACAu-- -----(uaua ---------- ---------- ---------- ------)--- 1381 ---AU|---A GCUAA--AGA C|ACCUU-GC --|------- (-cua--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG ACU----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUU| 1561 A|-GUAA-U- AC-CUU---a uaca------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|gGGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUUA U--------u ucCGGC|GUA AAACGUGUua ---uag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---ac-uu-- -aac-au--- aauaga--au -----|UAAA ACCCAA-CUA ----AUAU(G 2341 UGAAA)AUUC AU-------A GUUG-GUauU AAA------- ----cucaau -gAC(-GAAA 2401 -)GU|a---- ----auucua ---auauu-- ---------- uua-auauAC ACGAU-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCU 2521 U--AAGG-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- --------aa cua(uaac)a a---A-ACCC 2701 U-U|--U|GC C-UGAG-AAC UACUAGC(-- -CACC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGCUA U-ACCUCACC AUCCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(U --AAA)AAG- -----(aau- 3181 aa-)------ A-AGUAAGCA AGA-GCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----accc- 3781 ---------G UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 G-G-AU-GG- GA-AGU--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g ac---)---- ---------- ---------- AAG-AAcauu 4021 c--------- ------ACGA --UACCC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-AA-A--GG -a--cAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--AGCA 4261 AUGAAG-UA- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaauuag-- 4381 --------ac ugccgauauu aua---ccu- --aauacuua uuaauaag-- ----ccuaug 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AGGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGA--- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.aur.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Mesocricetus auratus. ACCESSION No information KEYWORDS No information. SOURCE Mesocricetus auratus. ORGANISM Mesocricetus auratus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X84390 LOCUS MMARNA12S 953 bp DNA ROD 01-JUN-1995 DEFINITION M.auratus mitochondrial 12S ribosomal RNA. ACCESSION X84390 KEYWORDS 12S rRNA; ribosomal RNA. SOURCE golden hamster. ORGANISM Mesocricetus auratus Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Glires; Rodentia; Sciurognathi; Myomorpha; Muridae; Cricetinae; Mesocricetus. REFERENCE 1 (bases 1 to 953) AUTHORS Hanni,C. TITLE Direct Submission JOURNAL Submitted (03-FEB-1995) to the EMBL/GenBank/DDBJ databases. C. Hanni, Lab Paleontologie URA327 CNRS, Institut Sciences Evolution, Universite Montpellier 2, Pl. E. Bataillon, 34095 Montpellier, FRANCE REFERENCE 2 (bases 1 to 953) AUTHORS Hanni,C., Laudet,V., Barriel,V. and Catzeflis,F.M. TITLE Evolutionary relationships of Acomys and other murids JOURNAL Unpublished COMMENT NCBI gi: 854274 FEATURES Location/Qualifiers source 1..953 /organism="Mesocricetus auratus" /clone="CHT37974VF" /note="DNA 3797" rRNA 1..953 /product="12S ribosomal RNA" BASE COUNT 340 a 198 c 167 g 248 t ORIGIN BASE COUNT 340 a 198 c 167 g 248 t 4260 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aaaAGGUU 661 (UGG-)U-CC U|AGCCU-UA UAG-UUAGUU -A-GAGG-UA |GA-GU--UA -CAC-A-UGC 721 -AAAu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aUAAACCAGU GUCAA---AU C|CCU-agg- --uu-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--acuuu -----)---- 1261 ---------- ---------- --aa--acc- c-uaAGGAGA |--------- gGGUAUCA-- 1321 -AGCACAUA- -----(caca ua-------- ---------- ---------- ------)--- 1381 --UAU|---A GCUAA--AGA C|ACCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACU----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUU| 1561 A|-GUCA-U- AC-CUC---a uca------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-ACUA U-------uc ucCGGC|GUA AAAUGUGUuu -uuauu---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- --acgaacau aauaga--au -----|UAAA ACCCAA-CUA ----AUAU(G 2341 UGAAA)AUUC AU-------U GUUG-GacuU AAA------- ----aucaau -aAC(-GAAA 2401 -)GU|a---- ----auucua ---auuauau u--------- aau-----AC ACGAU-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 A--AGUG-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a---A-AUCA 2701 C-U|--U|GC C-UGAG-AAC UACUGGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGUUA U-ACCUUACC ACCCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --AAA)AAG- -----(aac- 3181 aa-)------ G-AGUAAGCA AGA-GAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----accc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 G-G-CU-GG- GA-AGU--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ua---)---- ---------- ---------- AAG-AAcagu 4021 u--------- ------ACGC --UAUCC-UC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-u-) U-AG-A--GG -A--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--AGCA 4261 AUGAAG-UA- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaauuaa-- 4381 --------gc uaacuguuaa cua--uacc- --uaauauug acucauaaa- ----cuuaug 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGA--- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.aur.2 5213 bp RNA RNA 26-NOV-1996 DEFINITION Mitochondrion Mesocricetus auratus.; 12S ribosomal RNA. ACCESSION D89009 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Mesocricetus auratus. ORGANISM Mitochondrion Mesocricetus auratus. REFERENCE 1 (bases 1 to 827) AUTHORS Suzuki,H. TITLE Direct Submission JOURNAL Japan (E-mail:htsuzuki@eesbio.hokudai.ac.jp, Tel:011-706-2279, Fax: 011-706-2225) Submitted (12-NOV-1996) to the DDBJ/EMBL/GenBank databases. Hitoshi Suzuki, Hokkaido University, Grad. Sch. Environmental Earth Science; Kita 10, Nishi 5, Kita-ku, Sapporo, Hokkaido 060, STANDARD No information REFERENCE 2 (sites) AUTHORS Suzuki,H., Minato,S., Sakurai,S., Tsuchiya,K. and Fokin,I.M. TITLE Phylogenetic position and geographic differentiation of the Japanese dormouse, Glirulus japonicus, revealed by variations among rDNA, mtDNA and the Sry Gene JOURNAL Zool. Sci. (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: D89009 BASE COUNT 295 a 170 c 145 g 217 t 4386 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|AGCCU-UA UAG-UUAGUU -A-GAGG-UA |GA-GU--UA -CAC-A-UGC 721 -AAAu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aUAAACCAGU GUCAA---AU C|CCU-Ag-- --gu-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-uacuuu -----)---- 1261 ---------- ---------- --aa--acc- c-uaAGGAGA |--------- gGGUAUCA-- 1321 -AGCACAUA- -----(caca ua-------- ---------- ---------- ------)--- 1381 --UAU|---A GCUAA--AGA C|ACCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACU----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUU| 1561 A|-GUCA-U- AC-CUC---a uca------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-ACUA U-------uc ucCGGC|GUA AAAUGUGUuu --uuau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ----ua---- ---cggacau aauaga--au -----|UAAA ACCCAA-CUA ----AUAU(G 2341 UGAAA)AUUC AU-------U GUUG-GAcuu aAA------- ----aucaau -aAC(-GAAA 2401 -)GU|a---- ----auucua ---auuau-- ---------- auu--aauAC ACGAU-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 A--AGUG-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a---A-AUCA 2701 C-U|--U|GC C-UGAG-AAC UACUGGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGUUA U-ACCUUACC ACCCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --AAA)AAG- -----(aac- 3181 aa-)------ G-AGUAAGCA AGA-GAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----accc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 G-G-CU-GG- GA-AGU--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-cu a----)---- ---------- ---------- AAG-AAcagu 4021 u--------- ------aCGc --UAUCC-UC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-u-) U-AG-A--GG -A--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--AGCA 4261 AUGAAG-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.gambi 5213 bp RNA RNA 01-NOV-1996 DEFINITION Mitochondrion Cricetomys gambianus.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION X99461 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Cricetomys gambianus. ORGANISM Mitochondrion Cricetomys gambianus. REFERENCE 1 (bases 1 to 948) AUTHORS Catzeflis,F.M. Dubois,J.Y., Rakotondravony,D., Hinni,C., Sourrouille,P. and TITLE mitochondria Molecular relationships of three genera of Nesomyinae, endemic rodent taxa from Madagascar, as deduced from JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 948) AUTHORS Dubois,J.Y. TITLE Direct Submission JOURNAL Submitted (14-JUN-1996) J.Y. Dubois, Laboratoire Paleontologie, UMR 5554 CNRS, Institut Sciences Evolution, Universite Montpellier 2, Pl. E. Bataillon, F-34095 Montpellier, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X99461 ADN-numbers are DNA extract numbers from the 'Tissue Collection of Mammals of Montpellier, France' (Catzeflis 1991 Trends Ecol .Evol. 6: 168). BASE COUNT 354 a 202 c 155 g 237 t 4265 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA UAA-UUAGUU -G-GAAG-UA |AA-AU--UA -CAC-A-UGC 721 -AAAu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- uUACACCAGU GUCAA---AU C|CCU-Uaaa --au-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-uaaucu u----)---- 1261 ---------- ---------- --aa--auu- --uAAGGAGA |--------- gGGUAUCA-- 1321 -AGUUCAU-- -----(uauc u--------- ---------- ---------- ------)--- 1381 ---AU|---A GCUUA--AGA C|ACCUU-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACG----C-A 1501 GCA|GUG-AU AAAAAUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-UUC---c aa-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUUA ---------a uuCGGC|GUA AAAAGUGAcu --uaca---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ------uaca aauaga--au -----|UAAA AAUCAA-CUA ----AUAU(G 2341 UGAAA)AUUC AU-------- cGUU-GAAUC UAA------- ---aaucacu -aAC(-GAAA 2401 -)GU|a---- ----auucua ---aucaau- ---------- uuu--aagCC ACGAA-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CUU 2521 A--AAUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -uu(uaac)a a---A-ACUA 2701 U-U|--U|GC C-AGAG-AAC UACUAGC(-- -CACA--)GC CUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUACA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAUACC 2821 C--------- ----)CGUUC U-ACCUCACC AUCUCUUGCU ---------- ---------- 2881 (-------aa uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --AAA)AAG- -----(aaa- 3181 ca-)------ c-AGUAAGCA AGA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACC CAU------- ---------G 3841 A-G-AU-GG- AA-AGC--AA -UGGGCUACA UU--UUCUC- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uc a----)---- ---------- ---------- GAG-AAcauu 4021 c--------- ------ACGC --UACCC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAC-C-) U-AA-A--GG -A--CCAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--AGCA 4261 AUGAAG-UA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaacuagac 4381 -------aag uccauaaaaa uau--auac- --auaauaca acagacua-- ---accuacg 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGA--- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.valli 5213 bp RNA RNA 12-SEP-1996 DEFINITION Mitochondrion Gerbillurus vallianus.; . ACCESSION U67291 KEYWORDS . SOURCE Mitochondrion Gerbillurus vallianus. ORGANISM Mitochondrion Gerbillurus vallianus. REFERENCE 1 (bases 1 to 756) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE evidence from the mitochondrial 12SrRNA gene Higher level systematics of rodents (Mammalia, Rodentia): JOURNAL J. Mammal. Evol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 756) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE Direct Submission JOURNAL Submitted (20-AUG-1996) Wildlife and Fisheries, Texas A&M University, 210 Nagle Hall, College Station, TX 77843-2258, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U67291 BASE COUNT 266 a 157 c 130 g 203 t 4457 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~-~-~GC 721 -AAAu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aUGUACCUGU GAGAA---uU C|CCU-Uaaa --gu-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--auuu- -----)---- 1261 ---------- ---------- --aa--agu- u-uAAGGAGU |--------- uGGUAUCA-- 1321 -AGCACA--- -----(uucu u--------- ---------- ---------- ------)--- 1381 ----U|---A GCUCA--CGA C|ACCUA-GC --|------- (-uca--)-- -------GC| 1441 CACU------ ---------- ---------- -|-CCCC--( CACG-)--G- AUA----C-A 1501 GCA|GUG-AU AAAAAUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCUA-C- AC-CUU---a uca------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-UCA-- 1981 AACUA-ACUA A-------uc uuCGGC|GUA AAACGUGUua -uaaca---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -u--aauuaa aauaga--au -----|UAAA ACCCAA-CCA ----AUAC(G 2341 UUUAA)GUUC AU-------C GUUA-GGGCC UAA------- ---acccaca -aAC(-GAAA 2401 -)GU|a---- ----auucua ---auuua-- ---------- ucu---aaAC ACGAACAGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CUU 2521 A--AAUA-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- caa(uaac)a a---A-AUUA 2701 U-U|--U|GC C-AGAG-AAC UACGAGC(-- -CAUU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGCG- CUUUAUA-UC CGUCUAGA|G GAGCCUGU-U |CUUUA--AU CG(AUAAACC 2821 C--------- ----)CGUUC C-ACCUUACC AACUCUUGCU ---------- ---------- 2881 (--------u uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC UUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-UA AAC-|CCU(A --AAA)AGG- -----(aaa- 3181 ag-)------ A-AGUAAACG AGA-GAAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aaac- 3781 ---------A UAAAGA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-G-UU-GG- AA-AGC--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ug a----)---- ---------- ---------- AAG-AAcauu 4021 ---------- ------aCGA --UGCCU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-u-) U-AA-G--AG -G--UCAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-gu-- --)GCUUAAU U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.G.niger 5213 bp RNA RNA 11-JAN-191 DEFINITION Gerbillus nigeriae. ACCESSION No information KEYWORDS No information. SOURCE Gerbillus nigeriae. ORGANISM Gerbillus nigeriae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X84381 LOCUS MGN12RRNA 956 bp DNA ROD 01-JUN-1995 DEFINITION G.nigeriae mitochondrial 12S ribosomal RNA. ACCESSION X84381 KEYWORDS 12S rRNA; ribosomal RNA. SOURCE Nigerian gerbil. ORGANISM Gerbillus nigeriae Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Glires; Rodentia; Sciurognathi; Myomorpha; Muridae; Gerbillinae; Gerbillus. REFERENCE 1 (bases 1 to 956) AUTHORS Hanni,C. TITLE Direct Submission JOURNAL Submitted (03-FEB-1995) to the EMBL/GenBank/DDBJ databases. C. Hanni, Lab Paleontologie URA327 CNRS, Institut Sciences Evolution, Universite Montpellier 2, Pl. E. Bataillon, 34095 Montpellier, FRANCE REFERENCE 2 (bases 1 to 956) AUTHORS Hanni,C., Laudet,V., Barriel,V. and Catzeflis,F.M. TITLE Evolutionary relationships of Acomys and other murids JOURNAL Unpublished COMMENT NCBI gi: 854268 FEATURES Location/Qualifiers source 1..956 /organism="Gerbillus nigeriae" /clone="CHT4489, CH44894VF" /note="DNA 4489" rRNA 1..956 /product="12S ribosomal RNA" BASE COUNT 328 a 203 c 166 g 259 t ORIGIN BASE COUNT 328 a 203 c 166 g 259 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|GGCCU-UG UAG-UUAUUU -C-UAGG-UA |AG-UU--UA -CAC-A-UGC 721 -AAAc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aUGAACCUGU GCUUA---AU U|CCU-Uaca -guu-ag--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(ucauccu -----)---- 1261 ---------- ---------- --ca--aac- u-uAAGGGAA |--------- cAGUAUCA-- 1321 -AGCACAU-- -----(aaau ---------- ---------- ---------- ------)--- 1381 ---AU|---A GCUUA--UGA C|GCUUA-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUUu---C-A 1501 GCA|GUG-AU AAAAAUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCUA-U- AC-CUU---a aaga------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GUUUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -GAC-UCA-- 1981 AAUUA-ACUA C-------uu uuCGGC|GUA AAACGUGUcc -cugcc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ---uuaccau aauaga--au -----|UGAA AACCAA-CAA ----AUGC(G 2341 UAGAA)GUUU AU-------C GUUC-GGgcC UAA------- ---aaucacc -cAC(-GAAA 2401 -)GU|a---- ----auucua ---auaua-- ---------- uac---auAC ACGAU-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 A--AAUA-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -cu(uaac)a a---A-AUUA 2701 U-U|--U|GC C-AGAG-AAC UACUAGC(-- -CAAC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGUUC C-ACCUUACC AACUCUUGCU ---------- ---------- 2881 (-------au uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC UUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-AA|G-UA AAC-|CCU(C --AAA)AGG- -----(aua- 3181 ca-)------ U-AGUGAGCG AAA-AAAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aaac- 3781 ---------A UAAAGA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-G-UU-GG- AA-AGC--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- AAG-AAcauu 4021 a--------- ------ACGA --UGUCU-UU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-u-) U-UA-A--AG -A--UCAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-gu-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUG--AGCC 4261 AUGAAG-CA- CGUACACA-C -CGCUCGUCA C-CCUc-CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gaauaac-- 4381 --------cc cguacaccua aau--auaua --auuuuacg uacaucaac- ----cuuacg 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAAG-AGG-U AAGUCGUAAC AAGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GU- GCUUGGA--- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.cahir 5213 bp RNA RNA 11-JAN-191 DEFINITION Acomys cahirinus. ACCESSION No information KEYWORDS No information. SOURCE Acomys cahirinus. ORGANISM Acomys cahirinus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X84387 LOCUS MAC12SRNA 940 bp DNA ROD 01-JUN-1995 DEFINITION A.cahirinus mitochondrial 12S ribosomal RNA. ACCESSION X84387 KEYWORDS 12S rRNA; ribosomal RNA. SOURCE Egyptian spiny mouse. ORGANISM Acomys cahirinus Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Glires; Rodentia; Sciurognathi; Myomorpha; Muridae; Murinae; Acomys. REFERENCE 1 (bases 1 to 940) AUTHORS Hanni,C. TITLE Direct Submission JOURNAL Submitted (03-FEB-1995) to the EMBL/GenBank/DDBJ databases. C. Hanni, Lab Paleontologie URA327 CNRS, Institut Sciences Evolution, Universite Montpellier 2, Pl. E. Bataillon, 34095 Montpellier, FRANCE REFERENCE 2 (bases 1 to 940) AUTHORS Hanni,C., Laudet,V., Barriel,V. and Catzeflis,F.M. TITLE Evolutionary relationships of Acomys and other murids JOURNAL Unpublished COMMENT NCBI gi: 854252 FEATURES Location/Qualifiers source 1..940 /organism="Acomys cahirinus" /tissue_type="T-576" /clone="CHT4488, CHN34VF" rRNA 1..940 /product="12S ribosomal RNA" BASE COUNT 362 a 202 c 161 g 215 t ORIGIN BASE COUNT 362 a 202 c 161 g 215 t 4273 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aauAGGUU 661 (UGG-)U-CC U|AGCCU-UA UAA-UUAGCU -G-AAAG-UA |AA-AU--UA -CAC-A-UGC 721 -AAGa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCACACCAGU GUCAA---AU C|CCU-Uaga -acu-ag--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--acagc -----)---- 1261 ---------- ---------- --ua--acc- --uAAGGAGA |--------- gGAUAUCA-- 1321 -AGCACAU-- -----(uaau ---------- ---------- ---------- ------)--- 1381 ---AU|---A GCUCA--AGA C|AUCUC-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUU| 1561 A|-GUUA-U- AC-UUC---c aa-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUUA U-------uu uaCGGC|GUA AAAGGUGUua -uaucu---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -aaa-ac--a aauaga--au -----|UAAA ACCUGA-CUU ----AUAU(G 2341 UGAAA)AUUC AU-------U GUCA-GAcaA AAA------- ----cacaac -cAC(-GAAA 2401 -)GU|g---- ----auucua ---au----- ---------- aaa-ccaaAC ACGAA-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CUU 2521 A--AAUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(uaac)a a---A-AUUA 2701 U-U|--U|GC C-AGAG-AAC UACUAGC(-- -CAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAUACC 2821 C--------- ----)CGUUA C-ACCUCACC ACCCCUUGCU ---------- ---------- 2881 (-------aa uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(C --AAA)AGG- -----(aca- 3181 ca-)------ C-AGUAAGCA AGA-GCAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aaac- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-GU-GG- GA-AGU--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- AAG-AAcac- 4021 ---------- ------ACGA --AACCC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-AA-A--GG -a--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--AGCA 4261 AUGAAG-UG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaacuaa-- 4381 --------uc uucaaguaaa aua--aauaa --aauuaa-a cuaacuag-- ----aauacg 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGA--- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.H.stell 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Hylomyscus stella. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Hylomyscus stella. ORGANISM Mitochondrion Hylomyscus stella. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X85953 LOCUS HS12SRRNA 954 bp DNA UNA 01-JUN-1995 DEFINITION H.stella mitochondrial 12S rRNA gene. ACCESSION X85953 KEYWORDS 12S ribosomal RNA; 12S rRNA. SOURCE Hylomyscus stella. ORGANISM Mitochondrion Hylomyscus stella Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae. REFERENCE 1 (bases 1 to 954) AUTHORS Sourrouille,P., Hanni,C., Ruedi,M. and Catzeflis,F.M. TITLE Molecular systematics of Mus crociduroides, an endemic mouse of Sumatra (Muridae: Rodentia) JOURNAL Unpublished REFERENCE 2 (bases 1 to 954) AUTHORS Sourrouille,P. TITLE Direct Submission JOURNAL Submitted (28-MAR-1995) to the EMBL/GenBank/DDBJ databases. P. Sourrouille, Laboratoire Paleontologie - URA 327 CNRS, Institut Sciences Evolution, Universite Montpellier 2, Pl. E. Bataillon, F- 34095 Montpellier, FRANCE COMMENT NCBI gi: 854078 FEATURES Location/Qualifiers source 1..954 /organism="Hylomyscus stella" /strain="wild-caught in Burundi" /tissue_type="T-477" /mitochondrion /note="variant ADN 4590" rRNA <1..>954 /gene="12S rRNA" /product="12S ribosomal RNA" BASE COUNT 352 a 194 c 165 g 243 t ORIGIN BASE COUNT 352 a 194 c 165 g 243 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aaaAGGUU 661 (UGG-)U-CC U|GGCCU-UA UAA-UUAGUU -G-GAGG-UA |AG-AU--UA -CAC-A-UGC 721 -AAAu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aUAAACCGGU GUAAA---AU C|CCU-Uaaa -gau-au--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---ccaa -----)---- 1261 ---------- ---------- --aa--auu- --uAAGGAGA |--------- gGGUAUCA-- 1321 -AGCACAU-- -----(aau- ---------- ---------- ---------- ------)--- 1381 ---AU|---A GCUAA--AGA C|ACCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACU----C-A 1501 GCA|GUG-AU AAAUAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCUA-U- AC-CUC---u aa-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCU-- 1981 AACUA-AUUA C--------u cuCGGC|GUA AAACGUGUua -acuga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---ac-a--- -aac--aaua aauaga--au -----|UAAA AUUCAA-CUA ----AUAU(G 2341 UGAAA)AUUC AU-------U GUUA-GAacC UAA------- ---acacagu -aAC(-GAAG 2401 -)GU|a---- ----auucua ---gauauuc ---------- ucacuaaaAC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCA 2521 U--AAUA-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -cg(uaac)a a---A-AUUA 2701 U-U|--U|GC C-AGAG-AAC UACUAGC(-- -CAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUACACC 2821 C--------- ----)CGCUU U-ACCUCACC AUCCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AUC-|CCU(U --AAA)AGG- -----(ucu- 3181 aa-)------ A-AGUAGGCA AGA-GAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------G 3841 G-G-AU-GG- GA-AGC--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- AAG-AAcau- 4021 ---------- ------ACGA --UACCC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-A--GG -a--cGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--AGCA 4261 AUGAAG-UA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaauuaa-- 4381 --------au ucacuaaacu auu---aau- --aauuccua guaauaaa-- ----uuuauc 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAAUA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.L.edwar 5213 bp RNA RNA 11-JAN-191 DEFINITION Leopoldamys edwardsi. ACCESSION No information KEYWORDS No information. SOURCE Leopoldamys edwardsi. ORGANISM Leopoldamys edwardsi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X84386 LOCUS MLE12SRNA 956 bp DNA ROD 01-JUN-1995 DEFINITION L.edwarsi mitochondrial 12S ribosomal RNA. ACCESSION X84386 KEYWORDS 12S rRNA; ribosomal RNA. SOURCE Leopoldamys edwarsi. ORGANISM Leopoldamys edwarsi Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae; Leopoldamys. REFERENCE 1 (bases 1 to 956) AUTHORS Hanni,C. TITLE Direct Submission JOURNAL Submitted (03-FEB-1995) to the EMBL/GenBank/DDBJ databases. C. Hanni, Lab Paleontologie URA327 CNRS, Institut Sciences Evolution, Universite Montpellier 2, Pl. E. Bataillon, 34095 Montpellier, FRANCE REFERENCE 2 (bases 1 to 956) AUTHORS Hanni,C., Laudet,V., Barriel,V. and Catzeflis,F.M. TITLE Evolutionary relationships of Acomys and other murids JOURNAL Unpublished COMMENT NCBI gi: 854272 FEATURES Location/Qualifiers source 1..956 /organism="Leopoldamys edwarsi" /note="DNA 4689" rRNA 1..956 /product="12S ribosomal RNA" BASE COUNT 355 a 206 c 166 g 229 t ORIGIN BASE COUNT 355 a 206 c 166 g 229 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA UAA-UUAGUU -G-GAGG-UA |AG-AU--UA -CAC-A-UGC 721 -AAAu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aUAAACCGGU GUAAA---AU C|CCU-Uaaa -cau-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(gucccaa -----)---- 1261 ---------- ---------- --aa--auu- --uAAGGAGA |--------- gGGUAUCA-- 1321 -AGCACAU-- -----(aaa- ---------- ---------- ---------- ------)--- 1381 ---AU|---A GCUCA--AGA C|ACCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUC----C-A 1501 GCA|GUG-AU AAAUAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCUA-U- AC-CUC---u ua-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUUA U--------u ucCGGC|GUA AAACGUGUua -acuau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -aaucaaaac aauaga--au -----|UAAA AUCCAA-CUU ----AUAU(G 2341 UGAAA)AUUC AU-------U GUUA-GGacC UAA------- ---gcccaau -aAC(-GAAA 2401 -)GU|a---- ----auucua ---accucua ---------- aua-caacAC ACGAU-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 A--AAUA-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aac(ccac)a a---A-AAUA 2701 U-U|--U|GC C-AGAG-AAC UACUAGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGCUC U-ACCUCACC ACCCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(cau- 3181 ag-)------ A-AGUAAGCG CAA-GAAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aagc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------G 3841 A-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-gc cc---)---- ---------- ---------- AAG-AAcauu 4021 ---------- ------ACGA --AAUCC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-A--GG -A--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--CGCA 4261 AUGAAG-UA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaauua--- 4381 --------aa uugauacaac cau--agaua --auagc-gc -uaaaaaau- -----uuaug 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAAUA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.L.flavo 5213 bp RNA RNA 12-SEP-1996 DEFINITION Mitochondrion Lophuromys flavopunctatus.; . ACCESSION U67294 KEYWORDS . SOURCE Mitochondrion Lophuromys flavopunctatus. ORGANISM Mitochondrion Lophuromys flavopunctatus. REFERENCE 1 (bases 1 to 762) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE evidence from the mitochondrial 12SrRNA gene Higher level systematics of rodents (Mammalia, Rodentia): JOURNAL J. Mammal. Evol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 762) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE Direct Submission JOURNAL Submitted (20-AUG-1996) Wildlife and Fisheries, Texas A&M University, 210 Nagle Hall, College Station, TX 77843-2258, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U67294 BASE COUNT 288 a 167 c 125 g 182 t 4451 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~-~-~GC 721 -AAAu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aUAUUCCGGU GUCAA---AU C|CCA-Uaaa -acu-ag--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuuca ac---)---- 1261 ---------- ---------- --cu--agc- c-aAAGGAGA |--------- gGAUAUCA-- 1321 -AGCACAU-- -----(uuaa ccu------- ---------- ---------- ------)--- 1381 ---AU|---A GCUCA--AGA C|AUCUU-GC --|------- (-ccca-)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--G- AUA----C-A 1501 GCA|GUG-AU AGAAAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-UCU---c ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U -CGAUU|--- -AAC-CCA-- 1981 AACUA-AUUA U-------ua aaCGGC|GUA AAAAGUGUua --caca---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------ag-- ----acaaaa aauaga--au -----|UAAA AUUCAA-CUU ----AUAU(G 2341 UGAAA)AUUC AU-------- uguuagaaCC UAA------- ---acacaau -aAC(-GAAA 2401 -)GU|a---- ----auucua ---auauc-- ---------- uau-ccauAC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 C--AAUA-AU |UG|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(uaac)a a---A-AUUA 2701 U-U|--U|GC C-AGAG-AAC UACUAGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUACACC 2821 C--------- ----)CGUUA U-ACCUCACC ACCCCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aac- 3181 ac-)------ A-AGUAAGCA AGA-GAAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua ac---)---- ---------- ---------- AAG-AAcau- 4021 ---------- ------aCGA --AAACC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--c-) U-AA-A--GG -A--UUAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.eryth 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Mastomys erythroleucus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Mastomys erythroleucus. ORGANISM Mitochondrion Mastomys erythroleucus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X85952 LOCUS ME12SRNA 955 bp DNA UNA 01-JUN-1995 DEFINITION M.erythroleucus mitochondrial 12S rRNA gene. ACCESSION X85952 KEYWORDS 12S ribosomal RNA; 12S rRNA. SOURCE Mastomys erythroleucus. ORGANISM Mitochondrion Mastomys erythroleucus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 955) AUTHORS Sourrouille,P., Hanni,C., Ruedi,M. and Catzeflis,F.M. TITLE Molecular systematics of Mus crociduroides, an endemic mouse of Sumatra (Muridae: Rodentia) JOURNAL Unpublished REFERENCE 2 (bases 1 to 955) AUTHORS Sourrouille,P. TITLE Direct Submission JOURNAL Submitted (28-MAR-1995) to the EMBL/GenBank/DDBJ databases. P. Sourrouille, Laboratoire Paleontologie - URA 327 CNRS, Institut Sciences Evolution, Universite Montpellier 2, Pl. E. Bataillon, F- 34095 Montpellier, FRANCE COMMENT NCBI gi: 854266 FEATURES Location/Qualifiers source 1..955 /organism="Mastomys erythroleucus" /strain="wild-caught in Kabrousse, Senegal" /tissue_type="T-295" /mitochondrion /note="variant ADN 4653" rRNA <1..>955 /gene="12S rRNA" /product="12S ribosomal RNA" BASE COUNT 359 a 188 c 164 g 244 t ORIGIN BASE COUNT 359 a 188 c 164 g 244 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aaaAGGUU 661 (UGG-)U-CC U|GGCCU-UA UAA-UUAAUU -G-GAGG-UA |AG-AU--UA -CAC-A-UGC 721 -AAAc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aUAAACCGGU GUAGA---AU C|CCU-Uaaa -gaa-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---auua -----)---- 1261 ---------- ---------- --aa--auu- --uAAGGAGA |--------- gGGUAUCA-- 1321 -AGCACAU-- -----(aaa- ---------- ---------- ---------- ------)--- 1381 ---AU|---A GCUAA--AAA C|ACCUU-GC --|------- (-cca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACU----C-A 1501 GCA|GUG-AU AAAUAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCUA-U- AC-CUC---u ua-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCU-- 1981 AAUUA-AUUA U--------u cuCGGC|GUA AAACGUGUu- ---aau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------ug agcaugcauu aauaga--gu -----|UAAA AUUCAA-CUA ----AUAU(G 2341 UAAAA)AUUC AU-------U GUUA-GAacU UAA------- ---acacgac -aAC(-GAAA 2401 -)GU|a---- ----auucua ---aacauuu c--------- aua---aaAC ACGAU-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CUA 2521 U--AAUA-AU |UG|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ua(uaac)a a---A-AUUA 2701 U-U|--U|GC C-AGAG-AAC UACUAGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUACACC 2821 C--------- ----)CGCUU U-ACCUCACC AUCCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U A-AAA)AGG- -----(aau- 3181 aa-)------ G-AGUAAGCA AGA-GAAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caauc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------G 3841 G-G-AU-GG- AA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u cu---)---- ---------- ---------- AAG-AAcauc 4021 ---------- ------ACGA u-CACCC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-A--GG -a--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- guaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--AGCA 4261 AUGAAG-UA- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaguuaa-- 4381 --------au acacuuaauu aua---cau- --aauaacaa guaauaaaa- ----uuuauu 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAAUA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.cooki 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Mus cookii. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Mus cookii. ORGANISM Mitochondrion Mus cookii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X85946 LOCUS MC12SRRNA 956 bp DNA ROD 01-JUN-1995 DEFINITION M.cookii mitochondrial 12S rRNA gene. ACCESSION X85946 KEYWORDS 12S ribosomal RNA; 12S rRNA. SOURCE Cook's mouse. ORGANISM Mitochondrion Mus cookii Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Glires; Rodentia; Sciurognathi; Myomorpha; Muridae; Murinae; Mus. REFERENCE 1 (bases 1 to 956) AUTHORS Sourrouille,P., Hanni,C., Ruedi,M. and Catzeflis,F.M. TITLE Molecular systematics of Mus crociduroides, an endemic mouse of Sumatra (Muridae: Rodentia) JOURNAL Unpublished REFERENCE 2 (bases 1 to 956) AUTHORS Sourrouille,P. TITLE Direct Submission JOURNAL Submitted (28-MAR-1995) to the EMBL/GenBank/DDBJ databases. P. Sourrouille, Laboratoire Paleontologie - URA 327 CNRS, Institut Sciences Evolution, Universite Montpellier 2, Pl. E. Bataillon, F- 34095 Montpellier, FRANCE COMMENT NCBI gi: 854262 FEATURES Location/Qualifiers source 1..956 /organism="Mus cookii" /strain="lab-strain originating in Thailand" /mitochondrion /note="variant ADN 4111" rRNA <1..>956 /gene="12S rRNA" /product="12S ribosomal RNA" BASE COUNT 364 a 183 c 154 g 255 t ORIGIN BASE COUNT 364 a 183 c 154 g 255 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA UAA-UUAAUU -G-GAGG-UA |AA-AU--UA -CAC-A-UGC 721 -AAAu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aUAAACCGGU GUAAA---AU C|CCU-Uaaa -uau-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--accua -----)---- 1261 ---------- ---------- --aa--auu- --uAAGGAGA |--------- gGGUAUCA-- 1321 -AGCACAU-- -----(aaaa ---------- ---------- ---------- ------)--- 1381 ---AU|---A GCUUA--AGA C|ACCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUC----C-A 1501 GCA|GUG-AU AAAUAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-CUC---u ua-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUUA U--------u uuCGGC|GUA AAAUGUGUua -acuau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------ag- ---auaaaua aauaga--au -----|UAAA AUCCAA-CUU ----AUAU(G 2341 UGAAA)AUUC AU-------U GUUA-GGacC UAA------- ---acucaau -aAC(-GAAA 2401 -)GU|a---- ----auucua ---auaauuu ---------- aua---agAC ACGAC-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CCU 2521 A--AAUA-AC |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(uaac)a a---A-AUUA 2701 U-U|--U|GC C-AGAG-AAC UACUAGC(-- -CAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGCUC U-ACCUCACC AUCUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aau- 3181 ua-)------ A-AGUAAGCA CAA-GAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu aa---)---- ---------- ---------- AAG-AAcauu 4021 ---------- ------ACUA --UACCC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-A--GG -a--UUAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UCG--AGCA 4261 AUGAAG-UA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaauuaa-- 4381 --------au acaacuuauu aua---aau- --aauuccua aguaacuaa- ----uuuaug 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAAUA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.croco 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Mus crocodiroides. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Mus crocodiroides. ORGANISM Mitochondrion Mus crocodiroides. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X85951 LOCUS MC12SRNA 949 bp DNA UNA 01-JUN-1995 DEFINITION M.crociduroides mitochondrial 12S rRNA gene. ACCESSION X85951 KEYWORDS 12S ribosomal RNA; 12S rRNA. SOURCE Mus crociduroides. ORGANISM Mitochondrion Mus crociduroides Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 949) AUTHORS Sourrouille,P., Hanni,C., Ruedi,M. and Catzeflis,F.M. TITLE Molecular systematics of Mus crociduroides, an endemic mouse of Sumatra (Muridae: Rodentia) JOURNAL Unpublished REFERENCE 2 (bases 1 to 949) AUTHORS Sourrouille,P. TITLE Direct Submission JOURNAL Submitted (28-MAR-1995) to the EMBL/GenBank/DDBJ databases. P. Sourrouille, Laboratoire Paleontologie - URA 327 CNRS, Institut Sciences Evolution, Universite Montpellier 2, Pl. E. Bataillon, F- 34095 Montpellier, FRANCE COMMENT NCBI gi: 854261 FEATURES Location/Qualifiers source 1..949 /organism="Mus crociduroides" /strain="wild-caught near Kerinci, Sumatra" /tissue_type="T-1192" /mitochondrion rRNA <1..>949 /gene="12S rRNA gene" /product="12S ribosomal RNA" BASE COUNT 346 a 193 c 152 g 258 t ORIGIN BASE COUNT 346 a 193 c 152 g 258 t 4264 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA UAA-UUAAUU -G-GAGG-UA |AA-AU--UA -CAC-A-UGC 721 -AAAu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cUUAACCAGU GUAAA---AU C|CCU-Uaaa -cgu-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---aaca -----)---- 1261 ---------- ---------- --aa--acu- u-cAAGGAGA |--------- gGGUAUCA-- 1321 -AGCACAU-- -----(ucuu ---------- ---------- ---------- ------)--- 1381 ---AU|---A GCUUA--AGA C|ACCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUU----C-A 1501 GCA|GUG-AU AAAUAUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-CUC---u ua-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUUA U--------u ucCAGC|GUA AAACGUGUua -acuau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -uaacuaauu aauaga--au -----|UAAA AUCCAA-CUU ----AUAU(G 2341 UGAAA)AUUC AU-------U GUUA-GGacC UAA------- ---acacaau -aAC(-GAAA 2401 -)GU|a---- ----auucua ---auuauuu ---------- aua---acAC ACGAC-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CCU 2521 A--AAUA--U |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------u gac(uaac)a a---A-ACUA 2701 U-U|--U|GC C-AGAG-AAC UACUAGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAUACC 2821 C--------- ----)CGCUC C-ACCUCACC AUCCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(uaa- 3181 aa-)------ A-AGUAAGCA CAA-UAAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACU AAU------- ---------G 3841 G-G-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu uu---)---- ---------- ---------- AAG-AAcauu 4021 ---------- ------ACUu --UACCC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-A--GG -a--CUAGG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--AGCA 4261 AUGAAG-UA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaauuaa-- 4381 --------au uuaucacuau aua---aau- --aauuauaa cccacuua-- ----uuuaug 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGA--- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.matth 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Mus mattheyi. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Mus mattheyi. ORGANISM Mitochondrion Mus mattheyi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X85950 LOCUS MM12SRRNA 957 bp DNA UNA 01-JUN-1995 DEFINITION M.mattheyi mitochondrial 12S rRNA gene. ACCESSION X85950 KEYWORDS 12S ribosomal RNA; 12S rRNA. SOURCE Mus mattheyi. ORGANISM Mitochondrion Mus mattheyi Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae. REFERENCE 1 (bases 1 to 957) AUTHORS Sourrouille,P., Hanni,C., Ruedi,M. and Catzeflis,F.M. TITLE Molecular systematics of Mus crociduroides, an endemic mouse of Sumatra (Muridae: Rodentia) JOURNAL Unpublished REFERENCE 2 (bases 1 to 957) AUTHORS Sourrouille,P. TITLE Direct Submission JOURNAL Submitted (28-MAR-1995) to the EMBL/GenBank/DDBJ databases. P. Sourrouille, Laboratoire Paleontologie - URA 327 CNRS, Institut Sciences Evolution, Universite Montpellier 2, Pl. E. Bataillon, F- 34095 Montpellier, FRANCE COMMENT NCBI gi: 854273 FEATURES Location/Qualifiers source 1..957 /organism="Mus mattheyi" /strain="wild-caught in Burkina Faso" /tissue_type="T-770" /mitochondrion /note="variant ADN 4120" rRNA <1..>957 /gene="12S rRNA" /product="12S ribosomal RNA" BASE COUNT 359 a 181 c 161 g 256 t ORIGIN BASE COUNT 359 a 181 c 161 g 256 t 4256 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|GGCCU-UA UAA-UUAAUU -G-GAGG-UA |GA-AU--UA -CAC-A-UGC 721 -AAAu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gUAAACCGGU GUAAA---AU C|CCU-Uaaa -cau-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---aauu -----)---- 1261 ---------- ---------- --aa--acu- u-uAAGGAGA |--------- gGGUAUCA-- 1321 -AGCACAU-- -----(uuaa ---------- ---------- ---------- ------)--- 1381 ---AU|---A GCUUA--AGA C|ACCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUC----C-A 1501 GCA|GUG-AU AAAUAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUCA-U- AC-CUC---u ua-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUUA U--------u cuCGGC|GUA AAAUGUGUu- -aucua---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------uaaa uaaaugaaua aauaga--au -----|UAAA AUCCAA-CUA ----AUAU(G 2341 UGAAA)AUUC AU-------U GUUA-GGacA UAA------- ---auucaau -aAC(-GAAA 2401 -)GU|a---- ----auucua ---auaguuu ---------- uau--aauAC ACGAC-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CUU 2521 A--AAUA-CU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uau(uaac)a a---A-AUUA 2701 U-U|--U|GC C-AGAG-AAC UACUAGC(-- -UACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGCUC U-ACCUCACC AUCUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aag- 3181 ua-)------ U-AGUAAGCA CAA-GAAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aucc- 3781 ---------G UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------G 3841 A-G-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu aa---)---- ---------- ---------- AAG-AAcaau 4021 ---------- ------ACGA --UAUCC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-A--GG -A--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--AGCA 4261 AUGAAG-UA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaauuaa-- 4381 -------aua gcaauaauaa aca--uaga- --uaauuaua aaucacuua- ----uuuaug 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGA--- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.mus.1 5213 bp RNA RNA ~?~???? DEFINITION Mitochondrion Mus musculus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Mus musculus. ORGANISM Mitochondrion Mus musculus. REFERENCE 1 (bases 1 to 762) AUTHORS No information JOURNAL mt.mouse:who:published STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5213) Corresponding GenBank entry: J01420 Phylo:Mitochondria,Animal,Mammal,mouse BASE COUNT 361 a 188 c 154 g 253 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGGUU 661 (UGG-)U-CC U|GGCCU-UA UAA-UUAAUU -A-GAGG-UA |AA-AU--UA -CAC-A-UGC 721 -AAAc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aUAGACCGGU GUAAA---AU C|CCU-Uaaa -cau-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--acuua -----)---- 1261 ---------- ---------- --aa--auu- --uAAGGAGA |--------- gGGUAUCA-- 1321 -AGCACAUU- -----(aa-- ---------- ---------- ---------- ------)--- 1381 --AAU|---A GCUUA--AGA C|ACCUU-GC --|------- (cuua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACU----C-A 1501 GCA|GUG-AU AAAUAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-CUC---u ua-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUUA U--------c uuCGGC|GUA AAACGUGUCa acuaua---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- --aauaaaua aauaga--au -----|UAAA AUCCAA-CUU ----AUAU(G 2341 UGAAA)AUUC AU-------U GUUA-GGacC UAA------- ---acucaau -aAC(-GAAA 2401 -)GU|a---- ----auucua ---gucauu- ---------- uau--aauAC ACGAC-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CCU 2521 A--AAUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a auu(uaac)a a---A-ACUA 2701 U-U|--U|GC C-AGAG-AAC UACUAGC(-- -CAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGCUC U-ACCUCACC AUCUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(uau- 3181 ua-)------ A-AGUAAGCA AAA-GAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au aa---)---- ---------- ---------- AAG-AAcauu 4021 ---------- ------ACUA --UACCC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-A--GG -A--CUAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUG--AGCA 4261 AUGAAG-UA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaauuaa-- 4381 --------au uaaacuuaac aua---auu- --aauuucua gacauccg-- ----uuuaug 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAAUA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.mus.2 5213 bp RNA RNA 11-JAN-191 DEFINITION Mus musculus. ACCESSION No information KEYWORDS No information. SOURCE Mus musculus. ORGANISM Mus musculus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X84382 LOCUS MMM12SRNA 956 bp DNA ROD 01-JUN-1995 DEFINITION M.musculus mitochondrial 12S ribosomal RNA. ACCESSION X84382 KEYWORDS 12S rRNA; ribosomal RNA. SOURCE house mouse. ORGANISM Mus musculus Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Glires; Rodentia; Sciurognathi; Myomorpha; Muridae; Murinae; Mus. REFERENCE 1 (bases 1 to 956) AUTHORS Hanni,C. TITLE Direct Submission JOURNAL Submitted (03-FEB-1995) to the EMBL/GenBank/DDBJ databases. C. Hanni, Lab Paleontologie URA327 CNRS, Institut Sciences Evolution, Universite Montpellier 2, Pl. E. Bataillon, 34095 Montpellier, FRANCE REFERENCE 2 (bases 1 to 956) AUTHORS Hanni,C., Laudet,V., Barriel,V. and Catzeflis,F.M. TITLE Evolutionary relationships of Acomys and other murids JOURNAL Unpublished COMMENT NCBI gi: 854317 FEATURES Location/Qualifiers source 1..956 /organism="Mus musculus" /tissue_type="T-166" /note="DNA 3756" rRNA 1..956 /product="12S ribosomal RNA" BASE COUNT 361 a 189 c 154 g 252 t ORIGIN BASE COUNT 361 a 189 c 154 g 252 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA UAA-UUAAUU -A-GAGG-UA |AA-AU--UA -CAC-A-UGC 721 -AAAc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aUAGACCGGU GUAAA---AU C|CCU-Uaaa -cau-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---acuu -----)---- 1261 ---------- ---------- --aa--aau- u-uAAGGAGA |--------- gGGUAUCA-- 1321 -AGCACAU-- -----(uaaa ---------- ---------- ---------- ------)--- 1381 ---AU|---A GCUUA--AGA C|ACCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACU----C-A 1501 GCA|GUG-AU AAAUAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-CUC---u ua-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUUA U--------c uuCGGC|GUA AAACGUGUca -acuau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -aaauaaaua aauaga--au -----|UAAA AUCCAA-CUU ----AUAU(G 2341 UGAAA)AUUC AU-------U GUUA-GGacC UAA------- ---acucaau -aAC(-GAAA 2401 -)GU|a---- ----auucua ---gucauuu ---------- aua---auAC ACGAC-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CCU 2521 A--AAUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a auu(uaac)a a---A-ACUA 2701 U-U|--U|GC C-AGAG-AAC UACUAGC(-- -CAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGCUC U-ACCUCACC AUCUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(uau- 3181 ua-)------ A-AGUAAGCA AAA-GAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au aa---)---- ---------- ---------- AAG-AAcauu 4021 ---------- ------ACUA --UACCC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-A--GG -a--cUAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUG--AGCA 4261 AUGAAG-UA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaauuaa-- 4381 --------au uaaacuuaac aua---auu- --aauuucua gacauccg-- ----uuuaug 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAAUA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.mus.3 5213 bp RNA RNA 22-MAY-1998 DEFINITION Mitochondrion Mus musculus. str. NZB/B1NJ mitochondrion genome, complete sequence; . ACCESSION L07095 KEYWORDS . SOURCE Mitochondrion Mus musculus. str. NZB/B1NJ mitochondrion genome, complete sequence. ORGANISM Mitochondrion Mus musculus. REFERENCE 1 (bases 1 to 16303) AUTHORS Loveland,B.E., Wang,C.-R., Yonekawa,H., Hermel,E. and Fischer-Lindahl,K. TITLE Maternally transmitted histocompatibility antigen of mice: A hydrophobic peptide of a mitochondrially encoded protein JOURNAL Cell 60, 971-980 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L07095 BASE COUNT 361 a 189 c 154 g 252 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA UAA-UUAAUU -A-GAGG-UA |AA-AU--UA -CAC-A-UGC 721 -AAAc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aUAGACCGGU GUAAA---AU C|CCU-Uaaa -cau-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---acuu -----)---- 1261 ---------- ---------- --aa--aau- u-uAAGGAGA |--------- gGGUAUCA-- 1321 -AGCACAU-- -----(uaaa ---------- ---------- ---------- ------)--- 1381 ---AU|---A GCUUA--AGA C|ACCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACU----C-A 1501 GCA|GUG-AU AAAUAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-CUC---u ua-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUUA U--------c uuCGGC|GUA AAACGUGUca -acuau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -aaauaaaua aauaga--au -----|UAAA AUCCAA-CUU ----AUAU(G 2341 UGAAA)AUUC AU-------U GUUA-GGacC UAA------- ---acucaau -aAC(-GAAA 2401 -)GU|a---- ----auucua ---gucauuu ---------- aua---auAC ACGAC-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CCU 2521 A--AAUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a auu(uaac)a a---A-ACUA 2701 U-U|--U|GC C-AGAG-AAC UACUAGC(-- -CAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGCUC U-ACCUCACC AUCUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(uau- 3181 ua-)------ A-AGUAAGCA AAA-GAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au aa---)---- ---------- ---------- AAG-AAcauu 4021 ---------- ------ACUA --UACCC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-A--GG -a--cUAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUG--AGCA 4261 AUGAAG-UA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaauuaa-- 4381 --------au uaaacuuaac aua---auu- --aauuucua gacauccg-- ----uuuaug 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAAUA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.mus.4 5213 bp RNA RNA 22-MAY-1998 DEFINITION Mitochondrion Mus musculus. str. MilP mitocondrion genome, complete sequence; . ACCESSION L07096 KEYWORDS . SOURCE Mitochondrion Mus musculus. str. MilP mitocondrion genome, complete sequence. ORGANISM Mitochondrion Mus musculus. REFERENCE 1 (bases 1 to 16303) AUTHORS Fischer-Lindahl,K. Loveland,B.E., Wang,C.-R., Yonekawa,H., Hermel,E. and TITLE hydrophobic peptide of a mitochondrially encoded protein Maternally transmitted histocompatibility antigen of mice: A JOURNAL Cell 60, 971-980 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L07096 BASE COUNT 362 a 189 c 153 g 252 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA UAA-UUAAUU -A-GAGG-UA |AA-AU--UA -CAC-A-UGC 721 -AAAc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aUAGACCGGU GUAAA---AU C|CCU-Uaaa -cau-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---acuu -----)---- 1261 ---------- ---------- --aa--aau- u-uAAGGAGA |--------- gGGUAUCA-- 1321 -AGCACAU-- -----(uaaa ---------- ---------- ---------- ------)--- 1381 ---AU|---A GCUUA--AGA C|ACCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACU----C-A 1501 GCA|GUG-AU AAAUAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-CUC---u ua-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUUA U--------c uuCGGC|GUA AAACGUGUca -acuau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -aaauaaaua aauaga--au -----|UAAA AUCCAA-CUU ----AUAU(G 2341 UGAAA)AUUC AU-------U GUUA-GGacC UAA------- ---acucaau -aAC(-GAAA 2401 -)GU|a---- ----auucua ---aucauuu ---------- aua---auAC ACGAC-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CCU 2521 A--AAUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a auu(uaac)a a---A-ACUA 2701 U-U|--U|GC C-AGAG-AAC UACUAGC(-- -CAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGCUC U-ACCUCACC AUCUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(uau- 3181 ua-)------ A-AGUAAGCA AAA-GAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au aa---)---- ---------- ---------- AAG-AAcauu 4021 ---------- ------ACUA --UACCC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-A--GG -a--cUAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUG--AGCA 4261 AUGAAG-UA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaauuaa-- 4381 --------au uaaacuuaac aua---auu- --aauuucua gacauccg-- ----uuuaug 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAAUA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.pahar 5213 bp RNA RNA 11-JAN-191 DEFINITION Mus pahari. ACCESSION No information KEYWORDS No information. SOURCE Mus pahari. ORGANISM Mus pahari. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X84383 LOCUS MMP12SRNA 961 bp DNA ROD 01-JUN-1995 DEFINITION M.pahari mitochondrial 12S ribosomal RNA. ACCESSION X84383 KEYWORDS 12S rRNA; ribosomal RNA. SOURCE shrew mouse. ORGANISM Mus pahari Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Glires; Rodentia; Sciurognathi; Myomorpha; Muridae; Murinae; Mus. REFERENCE 1 (bases 1 to 961) AUTHORS Hanni,C. TITLE Direct Submission JOURNAL Submitted (03-FEB-1995) to the EMBL/GenBank/DDBJ databases. C. Hanni, Lab Paleontologie URA327 CNRS, Institut Sciences Evolution, Universite Montpellier 2, Pl. E. Bataillon, 34095 Montpellier, FRANCE REFERENCE 2 (bases 1 to 961) AUTHORS Hanni,C., Laudet,V., Barriel,V. and Catzeflis,F.M. TITLE Evolutionary relationships of Acomys and other murids JOURNAL Unpublished COMMENT NCBI gi: 854320 FEATURES Location/Qualifiers source 1..961 /organism="Mus pahari" /note="DNA 4115" rRNA 1..961 /product="12S ribosomal RNA" BASE COUNT 354 a 183 c 158 g 266 t ORIGIN BASE COUNT 354 a 183 c 158 g 266 t 4252 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA UAA-UUAAUU -G-GAGG-UA |AA-AU--UA -CAC-A-UGC 721 -AAAu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- uUUAACCAGU GUAAA---AU C|CCU-Uaaa -cgu-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---aaua -----)---- 1261 ---------- ---------- --ga--acu- u-cAAGGAGA |--------- gGGUAUCA-- 1321 -AGCACAU-- -----(uuuu ---------- ---------- ---------- ------)--- 1381 ---AU|---A GCUUA--AGA C|ACCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUU----C-A 1501 GCA|GUG-AU AAAUAUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-CUC---u ua-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUUA U--------u ucCGGC|GUA AAACGUGUua -acuau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----aagca cuuauacaua aauaga--au -----|UAAA AUCCAA-CUU ----AUAU(G 2341 UGAAA)AUUC AU-------U GUUA-GGacU UAA------- ---acacaau -aAC(-GAAA 2401 -)GU|a---- ----auucua ---auuguuu ---------- aua---auAC ACGAC-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CCU 2521 A--AAUA-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aac(aaac)a a---A-ACUA 2701 U-U|--U|GC C-AGAG-AAC UACUAGC(-- -UACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAUACC 2821 C--------- ----)CGCUC C-ACCUCACC AUCCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A A-UAA)AGG- -----(uag- 3181 ua-)------ A-AGUAAGCA CAA-GAAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU AAU------- ---------G 3841 G-G-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu uu---)---- ---------- ---------- AAG-AAcauu 4021 ---------- ------ACUA --UACCC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-AA-A--GG -a--CUAGG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--AGCA 4261 AUGAAG-UA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaauuaa-- 4381 --------au uuaauauaau aua---aau- --aauaacaa uuaacuua-- ----uuuaug 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAAUA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.platy 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Mus platythrix. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Mus platythrix. ORGANISM Mitochondrion Mus platythrix. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X85947 LOCUS MP12SRRNA 969 bp DNA ROD 01-JUN-1995 DEFINITION M.platythrix mitochondrial 12S rRNA gene. ACCESSION X85947 KEYWORDS 12S ribosomal RNA; 12S rRNA. SOURCE Mus platythrix. ORGANISM Mitochondrion Mus platythrix Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Glires; Rodentia; Sciurognathi; Myomorpha; Muridae; Murinae; Mus. REFERENCE 1 (bases 1 to 969) AUTHORS Sourrouille,P., Hanni,C., Ruedi,M. and Catzeflis,F.M. TITLE Molecular systematics of Mus crociduroides, an endemic mouse of Sumatra (Muridae: Rodentia) JOURNAL Unpublished REFERENCE 2 (bases 1 to 969) AUTHORS Sourrouille,P. TITLE Direct Submission JOURNAL Submitted (28-MAR-1995) to the EMBL/GenBank/DDBJ databases. P. Sourrouille, Laboratoire Paleontologie - URA 327 CNRS, Institut Sciences Evolution, Universite Montpellier 2, Pl. E. Bataillon, F- 34095 Montpellier, FRANCE COMMENT NCBI gi: 854336 FEATURES Location/Qualifiers source 1..969 /organism="Mus platythrix" /strain="lab strain from India" /tissue_type="T-406" /mitochondrion rRNA <1..>969 /gene="12S rRNA" /product="12S ribosomal RNA" BASE COUNT 361 a 191 c 158 g 259 t ORIGIN BASE COUNT 361 a 191 c 158 g 259 t 4244 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA UAA-UUAGUU -G-GAGG-UA |AA-AU--UA -CAC-A-UGC 721 -AAAu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAAACCGGU GUAAA---AU C|CCU-Uaaa -agu-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----aau -----)---- 1261 ---------- ---------- --aa--acu- u-cAAGGAGA |--------- gGGUAUCA-- 1321 -AGCACAUu- -----(uua- ---------- ---------- ---------- ------)--- 1381 --aAU|---A GCUUA--AGA C|ACCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUU----C-A 1501 GCA|GUG-AU AAAUAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-CUC---u ua-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUUA U-------uc u-CGGC|GUA AAAUGUGUua acuaca---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---aa-ua-- -aaau----- aauaga--au -----|UAAA AUCCAA-CUU ----AUAU(G 2341 UGAAA)AUUC AU-------U GUUA-GGacC UAA------- ---auucaau -uAC(-GAAA 2401 -)GU|a---- ----auucua ---auaau-- ---------- ugu--aauAC ACGAC-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CUU 2521 A--AAUA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aua(aaac)a a---A-ACUA 2701 U-U|--U|GC C-AGAG-AAC UACUAGC(-- -UAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGCUC C-ACCUCACC AUCUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(uau- 3181 ca-)------ G-AGUAAGCA CAA-GAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuuac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------G 3841 A-G-AU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu aa---)---- ---------- ---------- AAG-AAcauc 4021 ---------- ------ACCA --CACCC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) G-AA-A--GG -a--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--AGCA 4261 AUGAAG-UA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaauuaaau 4381 uucac-cuua auaaauauuc aua---uac- --uaucuaau auuuuaucaa cacauuuaug 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAAAA CC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.saxio 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Mus saxicola. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Mus saxicola. ORGANISM Mitochondrion Mus saxicola. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X85948 LOCUS MS12SRRNA 969 bp DNA ROD 01-JUN-1995 DEFINITION M.saxiocola mitochondrial 12S rRNA gene. ACCESSION X85948 KEYWORDS 12S ribosomal RNA; 12S rRNA. SOURCE spiny mouse. ORGANISM Mitochondrion Mus saxicola Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Glires; Rodentia; Sciurognathi; Myomorpha; Muridae; Murinae; Mus. REFERENCE 1 (bases 1 to 969) AUTHORS Sourrouille,P., Hanni,C., Ruedi,M. and Catzeflis,F.M. TITLE Molecular systematics of Mus crociduroides, an endemic mouse of Sumatra (Muridae: Rodentia) JOURNAL Unpublished REFERENCE 2 (bases 1 to 969) AUTHORS Sourrouille,P. TITLE Direct Submission JOURNAL Submitted (28-MAR-1995) to the EMBL/GenBank/DDBJ databases. P. Sourrouille, Laboratoire Paleontologie - URA 327 CNRS, Institut Sciences Evolution, Universite Montpellier 2, Pl. E. Bataillon, F- 34095 Montpellier, FRANCE COMMENT NCBI gi: 854341 FEATURES Location/Qualifiers source 1..969 /organism="Mus saxicola" /strain="wild-caught in Tamil Nadu, South India V-566" /tissue_type="T-824" /mitochondrion /note="variant ADN 4485" rRNA <1..>969 /gene="12S rRNA" /product="12S ribosomal RNA" BASE COUNT 361 a 190 c 159 g 259 t ORIGIN BASE COUNT 361 a 190 c 159 g 259 t 4244 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA UAA-UUAGUU -G-GAGG-UA |AA-AU--UA -CAC-A-UGC 721 -AAAu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAAACCGGU GUAAA---AU C|CCU-Uaaa -agu-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----aau -----)---- 1261 ---------- ---------- --aa--acu- u-cAAGGAGA |--------- gGGUAUCA-- 1321 -AGCACAUu- -----(uua- ---------- ---------- ---------- ------)--- 1381 --aAU|---A GCUUA--AGA C|ACCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUU----C-A 1501 GCA|GUG-AU AAAUAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-CUC---u ua-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUUA U-------uc u-CGGC|GUA AAAUGUGUua acuaca---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---aa-ua-- -aaau----- aauaga--au -----|UAAA AUCCAA-CUU ----AUAU(G 2341 UGAAA)AUUC AU-------U GUUA-GGacC UAA------- ---auucaau -uAC(-GAAA 2401 -)GU|a---- ----auucua ---auaau-- ---------- ugu--aauAC ACGAC-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CUU 2521 A--AAUA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aua(aaac)a a---A-ACUA 2701 U-U|--U|GC C-AGAG-AAC UACUAGC(-- -UAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGCUC C-ACCUCACC AUCUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(uau- 3181 ca-)------ G-AGUAAGCA CAA-GAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuuac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------G 3841 A-G-AU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu aa---)---- ---------- ---------- AAG-AAcauc 4021 ---------- ------ACCA --CACCC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) G-AA-A--GG -a--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UCG--AGCA 4261 AUGAAG-UA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaauuaaau 4381 uucac-cuua auaaauauuc aua---uac- --uaucuaau auuuuaucaa cacauuuaug 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAAAA AG-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.setul 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Mus setulosus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Mus setulosus. ORGANISM Mitochondrion Mus setulosus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X85949 LOCUS MS12SRNA 953 bp DNA ROD 01-JUN-1995 DEFINITION M.setulosus mitochondrial 12S rRNA gene. ACCESSION X85949 KEYWORDS 12S ribosomal RNA; 12S rRNA. SOURCE Mus setulosus. ORGANISM Mitochondrion Mus setulosus Eukaryotae; mitochondrial eukaryotes; Metazoa/Eumycota group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Vertebrata; Gnathostomata; Osteichthyes; Sarcopterygii; Choanata; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Glires; Rodentia; Sciurognathi; Myomorpha; Muridae; Murinae; Mus. REFERENCE 1 (bases 1 to 953) AUTHORS Sourrouille,P., Hanni,C., Ruedi,M. and Catzeflis,F.M. TITLE Molecular systematics of Mus crociduroides, an endemic mouse of Sumatra (Muridae: Rodentia) JOURNAL Unpublished REFERENCE 2 (bases 1 to 953) AUTHORS Sourrouille,P. TITLE Direct Submission JOURNAL Submitted (28-MAR-1995) to the EMBL/GenBank/DDBJ databases. P. Sourrouille, Laboratoire Paleontologie - URA 327 CNRS, Institut Sciences Evolution, Universite Montpellier 2, Pl. E. Bataillon, F- 34095 Montpellier, FRANCE COMMENT NCBI gi: 854340 FEATURES Location/Qualifiers source 1..953 /organism="Mus setulosus" /strain="wild-caught near Makokou in Gabon V-283" /tissue_type="T-420" /mitochondrion /note="variant ADN 4591" rRNA <1..>953 /gene="12S rRNA" /product="12S ribosomal RNA" BASE COUNT 354 a 178 c 157 g 264 t ORIGIN BASE COUNT 354 a 178 c 157 g 264 t 4260 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|GGCCU-UA UAA-UUAAUU -G-GAGG-UA |AA-AU--UA -CAC-A-UGC 721 -AAAu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aUAUACCGGU GUAAA---AU C|CCU-Uaaa -uau-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uagcu -----)---- 1261 ---------- ---------- --aa--acu- u-uAUGGAGA |--------- gGGUAUCA-- 1321 -AGCACAU-- -----(uaua ---------- ---------- ---------- ------)--- 1381 ---AU|---A GCUCA--AGA C|ACCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU AAAUAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-CUC---u ua-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUUA U--------u cuCGGC|GUA AAAUGUGUua -acuau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -aaauuaauu aauaga--au -----|UAAA AUCCAA-CUA ----AUAU(G 2341 UGAAA)AUUC AU-------U GUUA-GGacC UAA------- ---auucaau -uAC(-GAAA 2401 -)GU|a---- ----auucua ---aucauuu ---------- aua---auAC ACGAC-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CCU 2521 A--AAUA-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(uaac)a a---A-ACUA 2701 U-U|--U|GC C-AGAG-AAC UACUAGC(-- -UACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CGUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGCUA U-ACCUCACC AUCUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aaa- 3181 aa-)------ A-AGUAAGCA CAA-GAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----acuc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------G 3841 A-G-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu cu---)---- ---------- ---------- AAG-AAcauu 4021 ---------- ------ACGA --UAUCC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-A--GG -A--CUAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--AGCA 4261 AUGAAG-UA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaauuaa-- 4381 ---------a uauuucuuag uau--aaaua --auaaugau aaauuauaua ----uuuaug 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGA--- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.norve 5213 bp RNA RNA ~?~???? DEFINITION Mitochondrion Rattus norvegicus(rat). ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Rattus norvegicus(rat). ORGANISM Mitochondrion Rattus norvegicus(rat). REFERENCE 1 (bases 1 to 16303) AUTHORS No information JOURNAL March 31 1982 STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5213) Corresponding GenBank entry: J01438 Phylo:Mitochondria,Animal,Mammal,Rattus BASE COUNT 345 a 204 c 164 g 240 t 4260 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGGUU 661 (UGG-)U-CC U|GGCCU-UA UAA-UUAAUU -G-GAGG-UA |AG-AU--UA -CAC-A-UGC 721 -AAAc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aUAAACCGGU GUAAA---AU C|CCU-Uaaa -gau-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--gccua -----)---- 1261 ---------- ---------- --aa--acu- --uAAGGAGA |--------- gGGCAUCA-- 1321 -AGCACAU-- -----(aau- ---------- ---------- ---------- ------)--- 1381 ---AU|---A GCUCA--AGA C|GCCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACU----C-A 1501 GCA|GUG-AU AAAUAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCUAgU- AC-CUC---u ca-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUUA U--------u uuCGGC|GUA AAACGUGCCa -acuau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -aaaucucau aauaga--au -----|UAAA AUCCAA-CUU ----AUAU(G 2341 UGAAA)AUUC AU-------U GUUA-GGacC UAA------- ---gcccaau -aAC(-GAAA 2401 -)GU|a---- ----auucua ---aucauuu ---------- aua-uaauGC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 U--AAUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aac(cuac)a a---A-AUUA 2701 U-U|--U|GC C-AGAG-AAC UACUAGC(-- -UACA--)GC UUA--AAACA CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CGUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGUUC U-ACCUUACC CCUUCUCGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(cac- 3181 u--)------ A-AGUUAGCA CAA-G-AC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ------aac- 3781 ---------A U-AAAA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------G 3841 A-A-GC-GG- AA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu cc---)---- ---------- ---------- CAG-AGaaca 4021 u--------- -----uACGA --AA-CC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-A--GG -A--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--AGCA 4261 AUGAAG-UA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaauuag-- 4381 --------au ugacauucac aua--uaca- --uaauuuca cuaacaaa-- ----uuuaug 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAAUA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.U.ruddi 5213 bp RNA RNA 11-JAN-191 DEFINITION Uranomys ruddi. ACCESSION No information KEYWORDS No information. SOURCE Uranomys ruddi. ORGANISM Uranomys ruddi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X84388 LOCUS MUR12SRNA 948 bp DNA ROD 01-JUN-1995 DEFINITION U.ruddi mitochondrial 12S ribosomal RNA. ACCESSION X84388 KEYWORDS 12S rRNA; ribosomal RNA. SOURCE Uranomys ruddi. ORGANISM Uranomys ruddi Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae; Uranomys. REFERENCE 1 (bases 1 to 948) AUTHORS Hanni,C. TITLE Direct Submission JOURNAL Submitted (03-FEB-1995) to the EMBL/GenBank/DDBJ databases. C. Hanni, Lab Paleontologie URA327 CNRS, Institut Sciences Evolution, Universite Montpellier 2, Pl. E. Bataillon, 34095 Montpellier, FRANCE REFERENCE 2 (bases 1 to 948) AUTHORS Hanni,C., Laudet,V., Barriel,V. and Catzeflis,F.M. TITLE Evolutionary relationships of Acomys and other murids JOURNAL Unpublished COMMENT NCBI gi: 854349 FEATURES Location/Qualifiers source 1..948 /organism="Uranomys ruddi" /clone="CHT4413" /note="DNA 4413" rRNA 1..948 /product="12S ribosomal RNA" BASE COUNT 359 a 176 c 163 g 250 t ORIGIN BASE COUNT 359 a 176 c 163 g 250 t 4265 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|GGCCU-UA UAG-UUAAUU -A-GGGG-UA |GA-AU--UA -CAC-A-UGC 721 -AAAu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aUAUACCAGU GUCAG---AU C|CCC-Uuaa -aau-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-aaucuu -----)---- 1261 ---------- ---------- --aa--aua- --uAAGGAGG |--------- aGAUAUCA-- 1321 -AGCACAUa- -----(ucug ---------- ---------- ---------- ------)--- 1381 --uAU|---A GCUUA--AGA C|AUCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUCGA-CUA| 1561 A|gGUCA-U- AC-CCC---a aa-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUUA-AUUA U-------au uuCGGC|GUA AAACGUGCua ---uau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -uaauauaua aauaga--au -----|UAAA ACUCAA-CUU ----AUAU(G 2341 UGAAA)AUUC AU-------U GUUA-GAauU UAA------- ---aaucaau -aAC(-GAAG 2401 -)GU|a---- ----auucua ---auau--- ---------- auc--aauGC ACGAC-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CUU 2521 A--AAUA-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(uaac)a a---A-AUUA 2701 U-U|--U|GC C-AGAG-AAC UACGAGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGCUA U-ACCUUACC ACCUUUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --AAA)AAG- -----(aga- 3181 aa-)------ A-AGUAAGCA AAA-GAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGCA|GCC UAU------- ---------A 3841 A-G-GU-GG- GA-AGU--AA -UGGGCUACA UU--UUCUC- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ua---)---- ---------- ---------- AAG-AAuau- 4021 ---------- ------ACGA --AACCC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-A--GG -c--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-gu-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--AGCA 4261 AUGAAG-UG- CGCACACA-U -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaacuaa-- 4381 --------au acuaauacua uua---aau- --aaauuaca uuagaaaaa- ----uuuacg 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGA--- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.ingen 5213 bp RNA RNA 01-NOV-1996 DEFINITION Mitochondrion Macrotarsomys ingens.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION X99460 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Macrotarsomys ingens. ORGANISM Mitochondrion Macrotarsomys ingens. REFERENCE 1 (bases 1 to 969) AUTHORS Dubois,J.Y., Rakotondravony,D., Hinni,C., Sourrouille,P. and Catzeflis,F.M. TITLE mitochondria Molecular relationships of three genera of Nesomyinae, endemic rodent taxa from Madagascar, as deduced from JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 969) AUTHORS Dubois,J.Y. TITLE Direct Submission JOURNAL Submitted (14-JUN-1996) J.Y. Dubois, Laboratoire Paleontologie, UMR 5554 CNRS, Institut Sciences Evolution, Universite Montpellier 2, Pl. E. Bataillon, F-34095 Montpellier, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X99460 ADN-numbers are DNA extract numbers from the 'Tissue Collection of Mammals of Montpellier, France' (Catzeflis 1991 Trends Ecol .Evol. 6: 168). BASE COUNT 357 a 198 c 169 g 245 t 4244 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aaaAGGUU 661 (UGG-)U-CC U|GGCCU-UA UAG-UUAGUU -A-AAGG-AA |AA-AU--UA -CAC-A-UGC 721 -AAAu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- uUAAACCAGU GCCUA---AU C|CCU-Uaua -aau-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--acuca g----)---- 1261 ---------- ---------- --aa--auu- u-caAGGAGA |--------- gGAUAUCA-- 1321 -AGCACAUgu au-au(auua ---------- ---------- ---------- ------)auu 1381 uacau|---A GCUCA--AGA C|AUCUU-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACU----C-A 1501 GCA|GUG-AU AAAAAUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- UC-CUU---c aa-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AAUUA-ACUA C--------u ucCGGC|GUA AAACGUGUUu --augg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ----auacaa uaauaacacu aauaga--au -----|UAAA AUCCAA-UUU ----AUAU(G 2341 UGAAA)AUUC AU-------U GUUG-GAcuu aAA------- ----aucaau -aAC(-GAAA 2401 -)GU|a---- ----auucua ---gaag--- ---------- ccc-uaaaAC ACGAA-AACU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CUU 2521 G--AAUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -uu(uaac)a a---A-AUUA 2701 U-U|--U|GC C-AGAG-AAC UACUAGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUACA-UC CGUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUACACC 2821 C--------- ----)CGCUU U-ACCUCACC GUCUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aau- 3181 ga-)------ C-AGUAAGCA AAA-GAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-G-AC-GG- AA-AGU--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa a----)---- ---------- ---------- AAG-AAcauu 4021 u--------- ------aCGu --UACCC-UC C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) G-GG-A--GG -A--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--AGCA 4261 AUGAAG-UA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaauuagcca 4381 aauga-aaau cacacuuaca u-aagcccaa ucaaa--ggc uauga----- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGA--- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.N.rufus 5213 bp RNA RNA 01-NOV-1996 DEFINITION Mitochondrion Nesomys rufus.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION X99462 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Nesomys rufus. ORGANISM Mitochondrion Nesomys rufus. REFERENCE 1 (bases 1 to 949) AUTHORS Catzeflis,F.M. Dubois,J.Y., Rakotondravony,D., Hinni,C., Sourrouille,P. and TITLE endemic rodent taxa from Madagascar, as deduced from mitochondria Molecular relationships of three genera of Nesomyinae, JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 949) AUTHORS Dubois,J.Y. TITLE Direct Submission JOURNAL Submitted (14-JUN-1996) J.Y. Dubois, Laboratoire Paleontologie, UMR 5554 CNRS, Institut Sciences Evolution, Universite Montpellier 2, Pl. E. Bataillon, F-34095 Montpellier, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X99462 ADN-numbers are DNA extract numbers from the 'Tissue Collection of Mammals of Montpellier, France' (Catzeflis 1991 Trends Ecol .Evol. 6: 168). BASE COUNT 343 a 211 c 171 g 224 t 4264 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cagAGGUU 661 (UGG-)U-CC U|AGCCU-UA UGG-UUAAUU -A-GAGG-AA |GA-AU--UA -CAC-A-UGC 721 -AAAg----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cUAAACCAGU GUCAA---AU C|CCU-Uaua -auu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--accu- -----)---- 1261 ---------- ---------- --ag--aau- u-uAAGGAGA |--------- gGGUAUCA-- 1321 -AGUACAU-- -----(ucuu ---------- ---------- ---------- ------)--- 1381 ---AU|---A GCUAA--AAA C|ACCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACC----C-A 1501 GCA|GUG-AU AAAUAUUUAG C-AAUAAAU( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUCA-U- UC-CUC---u ua-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-ACCA U--------a gaCGGC|GUA AAACGUGAau --augg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ----aa---- -accaauauu aauaga--au -----|UAAA ACUCAG-CUA ----AUAA(G 2341 UAAAA)AUUC AU-------C GCUG-ACuau aaA------- ----aucaau -aAC(-GAAA 2401 -)GU|a---- ----auucua ---ccaau-- ---------- ccu--aauGC ACGAA-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CAUAAA-CUU 2521 A--AAUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)g a---A-AUUA 2701 U-U|--U|GC C-AGAG-AAC UACUAGC(-- -UACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAUACC 2821 C--------- ----)CGCUA C-ACCUCACC GUCUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UC-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aac- 3181 ca-)------ c-AGUAAGCU CAA-GAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----gacc- 3781 ---------A UAAAGA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-G-AC-GG- AA-AGC--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ac uc---)---- ---------- ---------- AAG-AAcacu 4021 c--------- ------aCGc --UACCC-UC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-a-) G-GG-A--GG -G--CCAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- au-ga-ga-- --)GCUUAAU U-gaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAG--AGCA 4261 AUGAAG-UA- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaauuagacu 4381 agcga-c-gc accaauaaau aauauaa--g ucaaagccuc uga------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGA--- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.N.albig 5213 bp RNA RNA 27-JUL-1995 DEFINITION Mitochondrion Neotoma albigula.; 16S rRNA; ribosomal RNA. ACCESSION X89780 KEYWORDS 16S rRNA; ribosomal RNA. SOURCE Mitochondrion Neotoma albigula. ORGANISM Mitochondrion Neotoma albigula. REFERENCE 1 (bases 1 to 751) AUTHORS Sullivan,J., Simon,C. and Holsinger,K.E. TITLE Among-site rate variation and phylogenetic analysis of 12S rRNA in sigmodontine rodents JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 751) AUTHORS Sullivan,J. TITLE Direct Submission JOURNAL Submitted (18-JUL-1995) to the EMBL/GenBank/DDBJ databases. J. Sullivan, University of Connecticut, Dep.of Ecology and Evolutionary U-43, Storrs, CT 06269-3043, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X89780 NCBI gi: 927457 BASE COUNT 278 a 165 c 126 g 182 t 4462 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~U--UA -CAC-A-UGC 721 -GAAa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- -UAAGCCAGU GUCAA---AU C|CCU-Uaga -acu-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uuua- -----)---- 1261 ---------- ---------- --ua--aac- c-uAAGGAGA |--------- gGGCAUCA-- 1321 -AGCACAUu- -----(aaau ---------- ---------- ---------- ------)--- 1381 --aAU|---A GCUCA--AGA C|GCCUU-GC --|------- (-cua--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG ACC----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCUA-U- AU-CUC---c aua------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AAUUA-AUUA U--------c caCGGC|GUA AAACGUGUcc --auag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------aa -acaaaaa-- aauaga--au -----|UAAA AAUCAA-CCA ----AUAU(G 2341 UGAAA)AUUC AU-------C GCUG-Aacuu aaA------- ----aacacu -aAC(-GAAA 2401 -)GU|a---- ----auucua ---acuaa-- ---------- cuu--aauAC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCC 2521 U--AAUG-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a---A-AUUA 2701 U-U|--U|GC C-CGAG-GAC UACUGGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGUUA U-ACCUUACC ACUCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --AA-)AAG- -----(aau- 3181 aa-)------ C-AGUAAGCA GGA-GAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacc-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 G-A-GU-GG- GA-AGU--AA -UGGGCUACA UU--UUCUC- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa c----)---- ---------- ---------- AAG-AAcauu 4021 ---------- ------ACGA --AACCC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-c-) U-AA-A--GG -A--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- a~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.N.flori 5213 bp RNA RNA 27-JUL-1995 DEFINITION Mitochondrion Neotoma floridiana.; 16S rRNA; ribosomal RNA. ACCESSION X89781 KEYWORDS 16S rRNA; ribosomal RNA. SOURCE Mitochondrion Neotoma floridiana. ORGANISM Mitochondrion Neotoma floridiana. REFERENCE 1 (bases 1 to 751) AUTHORS Sullivan,J., Simon,C. and Holsinger,K.E. TITLE Among-site rate variation and phylogenetic analysis of 12S rRNA in sigmodontine rodents JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 751) AUTHORS Sullivan,J. TITLE Direct Submission JOURNAL Submitted (18-JUL-1995) to the EMBL/GenBank/DDBJ databases. J. Sullivan, University of Connecticut, Dep.of Ecology and Evolutionary U-43, Storrs, CT 06269-3043, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X89781 NCBI gi: 927458 BASE COUNT 282 a 167 c 123 g 179 t 4462 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~U--UA -CAC-A-UGC 721 -GAAa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- -UAAGCCAGU GUCAA---AU C|CCU-Uaga -acu-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uuua- -----)---- 1261 ---------- ---------- --ua--aac- c-uAAGGAGA |--------- gGGCAUCA-- 1321 -AGCACAUu- -----(aaau ---------- ---------- ---------- ------)--- 1381 --aAU|---A GCUCA--AGA C|GCCUU-GC --|------- (-cua--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG ACC----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCUA-U- AU-CUC---c aua------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AAUUA-AUUA U--------c caCGGC|GUA AAACGUGUcc --auag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------a -aacaaaaa- aauaga--au -----|UAAA AAUCAA-CCA ----AUAU(G 2341 UGAAA)AUUC AU-------C GCUG-Aacuu aaA------- ----aacacu -aAC(-GAAA 2401 -)GU|a---- ----auucua ---acuaa-- ---------- cuu--aauAC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCC 2521 U--AAUA-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a---A-AUUA 2701 U-U|--U|GC C-CGAG-AAC UACUGGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUACA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGUUA U-ACCUUACC ACUCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --AA-)AAG- -----(aac- 3181 aa-)------ C-AGUAAGCA AGA-GAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacc-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 G-A-GU-GG- GA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa u----)---- ---------- ---------- AAG-AAcauu 4021 ---------- ------ACGA --AACCC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-c-) U-AA-A--GG -A--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- a~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Per.l.1 5213 bp RNA RNA 01-NOV-1996 DEFINITION Mitochondrion Peromyscus leucopus.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION X99463 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Peromyscus leucopus. ORGANISM Mitochondrion Peromyscus leucopus. REFERENCE 1 (bases 1 to 950) AUTHORS Dubois,J.Y., Rakotondravony,D., Hinni,C., Sourrouille,P. and Catzeflis,F.M. TITLE Molecular relationships of three genera of Nesomyinae, endemic rodent taxa from Madagascar, as deduced from mitochondria JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 950) AUTHORS Dubois,J.Y. TITLE Direct Submission JOURNAL Submitted (14-JUN-1996) J.Y. Dubois, Laboratoire Paleontologie, UMR 5554 CNRS, Institut Sciences Evolution, Universite Montpellier 2, Pl. E. Bataillon, F-34095 Montpellier, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X99463 BASE COUNT 350 a 192 c 168 g 240 t 4263 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aaaAGGUU 661 (UGG-)U-CC U|GGCCU-UA UAA-UUAGUU -A-GAGG-UA |AA-AU--UA -CAC-A-UGC 721 -AAAA----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gUAAACCAGU GUCAA---AU C|CCC-Uaaa --gc-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-uauuca -----)---- 1261 ---------- ---------- --aa--acc- u--AGGGAGA |--------- GGGCAUCA-- 1321 -AGUUCAUA- -----(cag- ---------- ---------- ---------- ------)--- 1381 --UAU|---A GCUAA--AGA C|GCCUU-GC --|------- (-cua--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG AUU----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-CUC---u caa------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUUA U-------uc uaCGGC|GUA AAACGUGUcc --auag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -gaaacaacu aauaga--au -----|UAAA AACCAA-CCA ----AUAU(G 2341 UGAAA)AUUC AU-------C GUUG-GGAUU AAA------- ----cucaau -aAC(-GAAA 2401 -)GU|a---- ----auucua ---auuau-- ---------- cuu--aauAC ACGAU-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 U--AAAG-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a---A-AUCA 2701 U-U|--U|GC C-UGAG-AAC UACUGGC(-- -UACC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGUUA U-ACCUCACC AUCCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --AAA)AGG- -----(agu- 3181 aa-)------ A-AGUAAGCA AGA-GAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacc-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU UAU------- ---------G 3841 A-G-AU-GG- GA-AGC--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa a----)---- ---------- ---------- AAG-AAcauu 4021 ---------- ------ACGA --UACcc-uu a-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) A-UA-A--GG -A--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--CGCA 4261 AUGAAG-UA- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaauuaaac 4381 -------gau uauuaaaccc uau--acau- --aauuacau aua---caa- ---guuuaug 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGA--- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.Per.l.2 5213 bp RNA RNA 27-JUL-1995 DEFINITION Mitochondrion Peromyscus leucopus.; 16S rRNA; ribosomal RNA. ACCESSION X89797 KEYWORDS 16S rRNA; ribosomal RNA. SOURCE Mitochondrion Peromyscus leucopus. ORGANISM Mitochondrion Peromyscus leucopus. REFERENCE 1 (bases 1 to 751) AUTHORS Sullivan,J., Simon,C. and Holsinger,K.E. TITLE rRNA in sigmodontine rodents Among-site rate variation and phylogenetic analysis of 12S JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 751) AUTHORS Sullivan,J. TITLE Direct Submission JOURNAL Submitted (18-JUL-1995) to the EMBL/GenBank/DDBJ databases. J. Sullivan, University of Connecticut, Dep.of Ecology and Evolutionary U-43, Storrs, CT 06269-3043, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X89797 NCBI gi: 927476 BASE COUNT 277 a 158 c 124 g 187 t 4467 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~U--UA -CAC-A-UGC 721 -AAAa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gUAAACCAGU GUCAA---AU C|CCC-Uaaa --gc-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-uauuc- -----)---- 1261 ---------- ---------- --aa--aac- c-uAGGGAGA |--------- gGGCAUCA-- 1321 -AGUUCAUa- -----(car- ---------- ---------- ---------- ------)--- 1381 --uAU|---A GCUAA--AGA C|GCCUU-GC --|------- (-cua--)-- -------GC| 1441 CACR------ ---------- ---------- -|-CCCC--( CAC--)--GG AUU----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- RC-CUC---u caa------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUUA U-------uc uaCGGC|GUA AAACGUGUcc --auag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------ga -aacaacu-- aauaga--au -----|UAAA AACCAA-CCA ----AUAU(G 2341 UGAAA)AUUC AU-------C GUUG-GGAUU AAA------- ----cucaau -aAC(-GAAA 2401 -)GU|a---- ----auucua ---auuau-- ---------- cuu--aauAC ACGAU-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 U--AAAG-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a---A-AUCA 2701 U-U|--U|GC C-UGAG-AAC UACUGGC(-- -UACC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGUUA U-ACCUCACC AUCCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUY(A --AAA)AGG- -----(aru- 3181 aa-)------ A-AGUAAGCA AGA-GAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacc-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU UAU------- ---------G 3841 A-G-AU-GG- GA-AGC--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa a----)---- ---------- ---------- AAG-AAcauu 4021 ---------- ------ACGA --UACCC-UU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) A-UA-A--GG -A--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- a~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.O.areni 5213 bp RNA RNA 27-JUL-1995 DEFINITION Mitochondrion Onychomys arenicola.; 16S rRNA; ribosomal RNA. ACCESSION X89782 KEYWORDS 16S rRNA; ribosomal RNA. SOURCE Mitochondrion Onychomys arenicola. ORGANISM Mitochondrion Onychomys arenicola. REFERENCE 1 (bases 1 to 751) AUTHORS Sullivan,J., Simon,C. and Holsinger,K.E. TITLE rRNA in sigmodontine rodents Among-site rate variation and phylogenetic analysis of 12S JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 751) AUTHORS Sullivan,J. TITLE Direct Submission JOURNAL Submitted (18-JUL-1995) to the EMBL/GenBank/DDBJ databases. J. Sullivan, University of Connecticut, Dep.of Ecology and Evolutionary U-43, Storrs, CT 06269-3043, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X89782 NCBI gi: 927459 BASE COUNT 285 a 159 c 125 g 182 t 4462 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~A--UA -CAC-A-UGC 721 -AAAa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------guc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aUAAACCAGU GUCAA---AU C|CCC-Uaga -acu-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uuuc- -----)---- 1261 ---------- ---------- --ua--agc- c-uAGGGAGA |--------- gGACAUCA-- 1321 -AGCACAUa- -----(aac- ---------- ---------- ---------- ------)--- 1381 ---AU|---A GCUAA--AGA C|GUCUU-GC --|------- (-cua--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CAC--)--GG ACU----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-CUC---u caa------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AAUUA-AUUA U-------uc ucCGGC|GUA AAACGUGUua --auag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------ac -aacaaauuu aauaga--au -----|UAAA AACCAA-CCA ----AUAU(G 2341 UGAAA)AUUC AU-------C GUUG-Gaacu aaA------- ----accaau -aAC(-GAAA 2401 -)GU|a---- ----auucua ---auaaa-- ---------- cuu--aauAC ACGAU-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 C--AAAG-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a---A-AUCA 2701 U-U|--U|GC C-UGAG-AAC UACUGGC(-- -CAUC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 ---------- ----)CGUUA U-ACCUCACC ACUCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --AAA)AGG- -----(aaa- 3181 aa-)------ A-AGUAAGCA AGA-GAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aacc-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 G-A-GU-GG- GA-AGU--AA -UGGGCUACA UU--UUCuU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa a----)---- ---------- ---------- AAG-AAcauu 4021 ---------- ------ACGA --UACCC-UU U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-AA-A--GG -A--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- a~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.O.leuco 5213 bp RNA RNA 28-JUL-1995 DEFINITION Onychomys leucogaster.; 12S rRNA gene; mitochondria; SSU rRNA gene. ACCESSION X89889 KEYWORDS 12S rRNA gene; mitochondria; SSU rRNA gene. SOURCE Onychomys leucogaster. ORGANISM Onychomys leucogaster. REFERENCE 1 (bases 1 to 751) AUTHORS Sullivan,J., Simon,C. and Holsinger,K.E. TITLE Among-site rate variation and phylogenetic analysis of 12S rRNA in sigmodontine rodents JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 751) AUTHORS Sullivan,J. TITLE Direct Submission JOURNAL Submitted (21-JUL-1995) to the EMBL/GenBank/DDBJ databases. J. Sullivan, University of Connecticut, Dep.of Ecology and Evolutionary Biology, U-43 Storrs, CT 06269-3043, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X89889 NCBI gi: 927488 BASE COUNT 283 a 156 c 125 g 187 t 4462 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~A--UA -CAC-G-UGC 721 -AAAa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------guc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aUAAACCAGU GUCAA---AU C|CCC-Uaga -acu-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uuuc- -----)---- 1261 ---------- ---------- --ua--agc- c-uAAGGAGA |--------- gGACAUCA-- 1321 -AGCACAUa- -----(aac- ---------- ---------- ---------- ------)--- 1381 ---AU|---A GCUAA--AGA C|GUCUU-GC --|------- (-cua--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CAC--)--GG ACC----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-CUC---u caa------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUUA U-------uc ucCGGC|GUA AAACGUGUua --auag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ----au--aa -caaauuu-- aauaga--au -----|UAAA AACCAA-CCA ----AUAU(G 2341 UGAAA)AUUC AU-------C GUUG-GaauU AAA------- ----accagu -aAC(-GAAA 2401 -)GU|a---- ----auucua ---auaaa-- ---------- cuu--aauAC ACGAU-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 C--AAAG-AU |UG|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a---A-AUCA 2701 U-U|--U|GC C-UGAG-AAC UACUGGC(-- -CAUC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 ---------- ----)CGUUA U-ACCUCACC ACUUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --AAA)AGG- -----(aau- 3181 aa-)------ A-AGUAAGCA AGA-GAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uacc-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-A-GU-GG- GA-AGU--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa a----)---- ---------- ---------- AAG-AAcauu 4021 ---------- ------ACGA --UACCC-UU U-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) A-AA-A--GG -A--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- a~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.O.torri 5213 bp RNA RNA 27-JUL-1995 DEFINITION Mitochondrion Onychomys torridus.; 16S rRNA; ribosomal RNA. ACCESSION X89783 KEYWORDS 16S rRNA; ribosomal RNA. SOURCE Mitochondrion Onychomys torridus. ORGANISM Mitochondrion Onychomys torridus. REFERENCE 1 (bases 1 to 751) AUTHORS Sullivan,J., Simon,C. and Holsinger,K.E. TITLE rRNA in sigmodontine rodents Among-site rate variation and phylogenetic analysis of 12S JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 751) AUTHORS Sullivan,J. TITLE Direct Submission JOURNAL Submitted (18-JUL-1995) to the EMBL/GenBank/DDBJ databases. J. Sullivan, University of Connecticut, Dep.of Ecology and Evolutionary U-43, Storrs, CT 06269-3043, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X89783 NCBI gi: 927464 BASE COUNT 284 a 155 c 122 g 190 t 4462 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~A--UA -UAU-A-UGC 721 -AAAa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------guc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aUAAACCAGU GUCAA---AU C|CCC-Uaga -acu-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uuuc- -----)---- 1261 ---------- ---------- --ua--agc- c-uAAGGAGA |--------- aGACAUCA-- 1321 -AGCACAUa- -----(aau- ---------- ---------- ---------- ------)--- 1381 ---AU|---A GCUAA--AGA C|GUCUU-GC --|------- (-cua--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CAC--)--GG ACC----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-CUC---u uaa------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUUA U-------uc ucCGGC|GUA AAACGUGUua --auag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------au -aauaaauuu aauaga--au -----|UAAA AACCAA-CCA ----AUAU(G 2341 UGAAA)AUUC AU-------C GUUG-Gaauu aaA------- ----cccagu -aAC(-GAAA 2401 -)GU|a---- ----auucua ---auaaa-- ---------- cuu--aauAC ACGAU-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 U--AAAG-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a---A-AUCA 2701 U-U|--U|GC C-UGAG-AAC UACUGGC(-- -CAUC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 ---------- ----)CGUUA U-ACCUCACC ACUCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --AAA)AGG- -----(aac- 3181 aa-)------ A-AGUAAGCA AGA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aacc-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 G-A-GU-GG- GA-AGU--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa a----)---- ---------- ---------- AAG-AAcauu 4021 ---------- ------ACGU --UACCC-UU U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) A-AA-A--GG -A--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- a~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.O.bande 5213 bp RNA RNA 12-SEP-1996 DEFINITION Mitochondrion Osgoodomys banderanus.; . ACCESSION U67295 KEYWORDS . SOURCE Mitochondrion Osgoodomys banderanus. ORGANISM Mitochondrion Osgoodomys banderanus. REFERENCE 1 (bases 1 to 759) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE evidence from the mitochondrial 12SrRNA gene Higher level systematics of rodents (Mammalia, Rodentia): JOURNAL J. Mammal. Evol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 759) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE Direct Submission JOURNAL Submitted (20-AUG-1996) Wildlife and Fisheries, Texas A&M University, 210 Nagle Hall, College Station, TX 77843-2258, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U67295 BASE COUNT 281 a 155 c 132 g 191 t 4454 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~-~-~GC 721 -AAAa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GUAAACCAGU GUCAA---aU C|CCC-Uaaa -acu-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--aacc- -----)---- 1261 ---------- ---------- --ua--agc- u-uAGGGAGA |--------- gGGCAUCA-- 1321 -AGUACAU-- -----(acaa ---------- ---------- ---------- ------)--- 1381 ---AU|---A GCUAC--AGA C|GCCUU-GC --|------- (-cua--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG ACC----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-CUC---u caa------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUUA U-------ua uaCGGC|GUA AAACGUGUuc -auagg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -aauaaaacu aauaga--au -----|UAAA AACCAA-CCA ----AUAU(G 2341 UGAAA)AUUC AU-------C GUUG-GGAUU AAA------- ----uucaau -aAC(-GAAA 2401 -)GU|a---- ----auucua ---aucaa-- ---------- cuu--aauAC ACGAU-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CUU 2521 C--AAUG-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a---A-AUCA 2701 U-U|--U|GC C-UGAG-AAC UACUGGC(-- -UAUC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CGUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUACACC 2821 C--------- ----)CGUUA U-ACCUCACC AUCCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --AAA)AGG- -----(aau- 3181 aa-)------ A-AGUAAGCA AGA-GAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU UAU------- ---------G 3841 G-A-GU-GG- GA-AGU--AA -UGAGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa a----)---- ---------- ---------- AAG-AAcauu 4021 ---------- ------aCGA --UACCC-UU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-UA-A--GG -G--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.eremi 5213 bp RNA RNA 27-JUL-1995 DEFINITION Mitochondrion Peromyscus eremicus.; 16S rRNA; ribosomal RNA. ACCESSION X89784 KEYWORDS 16S rRNA; ribosomal RNA. SOURCE Mitochondrion Peromyscus eremicus. ORGANISM Mitochondrion Peromyscus eremicus. REFERENCE 1 (bases 1 to 753) AUTHORS Sullivan,J., Simon,C. and Holsinger,K.E. TITLE rRNA in sigmodontine rodents Among-site rate variation and phylogenetic analysis of 12S JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 753) AUTHORS Sullivan,J. TITLE Direct Submission JOURNAL Submitted (18-JUL-1995) to the EMBL/GenBank/DDBJ databases. J. Sullivan, University of Connecticut, Dep.of Ecology and Evolutionary U-43, Storrs, CT 06269-3043, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X89784 NCBI gi: 927467 BASE COUNT 287 a 154 c 127 g 185 t 4460 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~U--UA -CAC-A-UGC 721 -AAAa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gUAAACCAGU GUCAA---AU C|CCC-Uaaa --gc-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-uaaaa- -----)---- 1261 ---------- ---------- u-aa--aac- c-uAGGGAGA |--------- gGGCAUCA-- 1321 -AGCACAUa- -----(uuu- ---------- ---------- ---------- ------)--- 1381 -caAU|---A GCUAA--AGA C|GCCUU-GC --|------- (-caa--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CAC--)--GG AUU----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-CUC---u caa------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUUA U-------ua aaCGGC|GUA AAACGUGUcc --auag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------ga -aaaaaca-- aauaga--au -----|UAAA AACCAG-CUA ----AUAU(G 2341 UGAAA)AUUC AU-------A GAUG-Guacu aaA------- ----aucagu -aAC(-GAAA 2401 -)GU|a---- ----auucua ---auuaa-- ---------- cuu--aauAC ACGAU-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CUU 2521 U--AACG-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a---A-AUCA 2701 U-U|--U|GC C-UGAG-AAC UACUGGC(-- -CACC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CGUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGUUA U-ACCUCACC AUCCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --AAA)AGG- -----(aau- 3181 aa-)------ A-AGUAAGCA AGA-GAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacc-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU UAU------- ---------G 3841 A-G-AU-GG- GA-AGC--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa a----)---- ---------- ---------- AAG-AAcauu 4021 ---------- ------ACGA --UAUCC-UU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) A-UA-A--GG -A--CUAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- a~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.gossy 5213 bp RNA RNA 27-JUL-1995 DEFINITION Mitochondrion Peromyscus gossypinus.; 16S rRNA; ribosomal RNA. ACCESSION X89795 KEYWORDS 16S rRNA; ribosomal RNA. SOURCE Mitochondrion Peromyscus gossypinus. ORGANISM Mitochondrion Peromyscus gossypinus. REFERENCE 1 (bases 1 to 751) AUTHORS Sullivan,J., Simon,C. and Holsinger,K.E. TITLE Among-site rate variation and phylogenetic analysis of 12S rRNA in sigmodontine rodents JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 751) AUTHORS Sullivan,J. TITLE Direct Submission JOURNAL Submitted (18-JUL-1995) to the EMBL/GenBank/DDBJ databases. J. Sullivan, University of Connecticut, Dep.of Ecology and Evolutionary U-43, Storrs, CT 06269-3043, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X89795 NCBI gi: 927470 BASE COUNT 279 a 157 c 127 g 188 t 4462 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~U--UA -CAC-A-UGC 721 -AAAa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gUAAACCAGU GUCAA---AU C|CcC-Uaaa --gc-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-uauuc- -----)---- 1261 ---------- ---------- --aa--aac- c-uAGGGAGA |--------- gGGCAUCA-- 1321 -AGUUCAUa- -----(caa- ---------- ---------- ---------- ------)--- 1381 --uAU|---A GCUAA--AGA C|GUCUU-GC --|------- (-cua--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CAC--)--GG AUU----C-A 1501 GCA|GUG-AU AAAAAUUAUG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCUA-U- AU-CCU---u caa------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUUA U-------ua uaCGGC|GUA AAACGUGUcc --auag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------ga -aacaacu-- aauaga--au -----|UAAA AACCAA-CCA ----AUAU(G 2341 UGAAA)AUUC AU-------C GUUG-GGAUU AAA------- ----cucaau -aAC(-GAAA 2401 -)GU|a---- ----auucua ---auuau-- ---------- cuu--aauAC ACGAU-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 C--AAAG-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a---A-AUCA 2701 U-U|--U|GC C-UGAG-AAC UACUGGC(-- -CACC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CGUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGUUA U-ACCUCACC AUCCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --AAA)AGG- -----(agu- 3181 aa-)------ A-AGUAAGCA AGA-GAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacc-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU UAU------- ---------G 3841 A-G-AU-GG- GA-AGC--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa a----)---- ---------- ---------- AAG-AAcauu 4021 ---------- ------ACGA --AACCC-UU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAU---) A-UA-A--GG -A--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- a~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.manic 5213 bp RNA RNA 27-JUL-1995 DEFINITION Peromyscus maniculatus; 16S rRNA; ribosomal RNA. ACCESSION X89796 KEYWORDS 16S rRNA; ribosomal RNA. SOURCE Peromyscus maniculatus. ORGANISM Peromyscus maniculatus. REFERENCE 1 (bases 1 to 754) AUTHORS Sullivan,J., Simon,C. and Holsinger,K.E. TITLE rRNA in sigmodontine rodents Among-site rate variation and phylogenetic analysis of 12S JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 754) AUTHORS Sullivan,J. TITLE Direct Submission JOURNAL Submitted (18-JUL-1995) to the EMBL/GenBank/DDBJ databases. J. Sullivan, University of Connecticut, Dep.of Ecology and Evolutionary U-43, Storrs, CT 06269-3043, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X89796 NCBI gi: 927473 BASE COUNT 284 a 159 c 129 g 182 t 4459 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~U--UA -CAC-A-UGC 721 -AAAa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gUAAACCAGU GUCAA---AU C|CCC-Uaaa -gcu-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--auuc- -----)---- 1261 ---------- ---------- --aa--aac- c-uAGGGAGA |--------- gGGCAUCA-- 1321 -AGUACAUa- -----(caaa ---------- ---------- ---------- ------)--- 1381 --uAU|---A GCUAA--AGA C|GUCuu-GC --|------- (-cua--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CAC--)--GG ACU----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-CUC---u uaa------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U AGCAUU|--- -AAC-CCA-- 1981 AAUUA-AUUA U-------ua uaCGGC|GUA AAACGUGUcc --acag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------ga -aacaauc-- aauaga--au -----|UAAA AACCAA-CCA ----AUAU(G 2341 UGAAA)AUUC AU-------C GUUG-Ggacu aaA------- ----accaau -aAC(-GAAA 2401 -)GU|a---- ----auucua ---auuag-- ---------- cuu--aacAC ACGAU-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 U--AAAG-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a---A-AUAA 2701 U-U|--U|GC C-UGAG-AAC UACUGGC(-- -CAUC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CGUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGUUA U-ACCUCACC ACCCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --AAA)GGG- -----(aau- 3181 aa-)------ A-AGUAAGCA AGA-GAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacc-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU UAU------- ---------G 3841 A-G-GU-GG- GA-AGC--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa aaa--)---- ---------- ---------- AAG-AAcauu 4021 ---------- ------ACGA --UACCC-UU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-UA-A--GG -A--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- a~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.melan 5213 bp RNA RNA 27-JUL-1995 DEFINITION Mitochondrion Peromyscus melanotis.; 16S rRNA; ribosomal RNA. ACCESSION X89785 KEYWORDS 16S rRNA; ribosomal RNA. SOURCE Mitochondrion Peromyscus melanotis. ORGANISM Mitochondrion Peromyscus melanotis. REFERENCE 1 (bases 1 to 752) AUTHORS Sullivan,J., Simon,C. and Holsinger,K.E. TITLE Among-site rate variation and phylogenetic analysis of 12S rRNA in sigmodontine rodents JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 752) AUTHORS Sullivan,J. TITLE Direct Submission JOURNAL Submitted (18-JUL-1995) to the EMBL/GenBank/DDBJ databases. J. Sullivan, University of Connecticut, Dep.of Ecology and Evolutionary U-43, Storrs, CT 06269-3043, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X89785 NCBI gi: 927479 BASE COUNT 281 a 158 c 128 g 185 t 4461 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~U--UA -CAC-A-UGC 721 -AAAa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gUAAACCAGU GUCAA---AU C|CCC-Uaaa --gc-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uauuc -----)---- 1261 ---------- ---------- --aa--aac- c-uAGGGAGA |--------- gGGCAUCA-- 1321 -AGUACAUa- -----(uua- ---------- ---------- ---------- ------)--- 1381 -guAU|---A GCUAA--AGA C|GUCUU-GC --|------- (-cua--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CAC--)--GG ACu----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-CUC---u caa------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUUA U-------ua uaCGGC|GUA AAACGUGUcc --auag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------ga -aacaacc-- aauaga--au -----|UAAA AACCAA-CCA ----AUAU(G 2341 UGAAA)AUUC AU-------C GUUG-Ggacu aaA------- ----aucaau -aAC(-GAAA 2401 -)GU|a---- ----auucua ---auuaa-- ---------- cuu--aauAC ACGAU-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 U--AAAG-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a---A-AUCA 2701 U-U|--U|GC C-UGAG-AAC UACUGGC(-- -CAUC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CGUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGUUA U-ACCUCACC ACCCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --AAA)AGG- -----(aau- 3181 aa-)------ A-AGUAAGCA AGA-GAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacc-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU UAU------- ---------G 3841 A-G-GU-GG- GA-AGC--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa a----)---- ---------- ---------- AAG-AAcauu 4021 ---------- ------ACGA --UACCC-UU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) A-UA-A--GG -A--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- a~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.polio 5213 bp RNA RNA 28-JUL-1995 DEFINITION Mitochondrion Peromyscus polionotus.; 12S rRNA gene; mitochondria; SSU rRNA gene. ACCESSION X89888 KEYWORDS 12S rRNA gene; mitochondria; SSU rRNA gene. SOURCE Mitochondrion Peromyscus polionotus. ORGANISM Mitochondrion Peromyscus polionotus. REFERENCE 1 (bases 1 to 751) AUTHORS Sullivan,J., Simon,C. and Holsinger,K.E. TITLE Among-site rate variation and phylogenetic analysis of 12S rRNA in sigmodontine rodents JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 751) AUTHORS Sullivan,J. TITLE Direct Submission JOURNAL Submitted (21-JUL-1995) to the EMBL/GenBank/DDBJ databases. J. Sullivan, University of Connecticut, Dep.of Ecology and Evolutionary Biology, U-43 Storrs, CT 06269-3043, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X89888 NCBI gi: 927501 BASE COUNT 282 a 160 c 126 g 183 t 4462 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~U--UA -CAC-A-UGC 721 -AAAa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gUAAACCAGU GUCAA---AU C|CCC-Uaaa --gc-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uauuc -----)---- 1261 ---------- ---------- --aa--aac- c-uAGGGAGA |--------- gGGCAUCA-- 1321 -AGUACAUa- -----(caa- ---------- ---------- ---------- ------)--- 1381 --uAU|---A GCUAA--AGA C|GUCUU-GC --|------- (-cua--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CAC--)--GG ACU----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-CUC---u caa------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUUA U-------ua uaCGGC|GUA AAACGUGUcc --auag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------ga -aacaacc-- aauaga--au -----|UAAA AACCAA-CCA ----AUAU(G 2341 UGAAA)AUUC AU-------C GUUG-GAAUU AAA------- ----accaau -aAC(-GAAA 2401 -)GU|a---- ----auucua ---auuaa-- ---------- cuu--aacAC ACGAU-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 U--AAAG-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a---A-AUCA 2701 U-U|--U|GC C-UGAG-AAC UACUGGC(-- -CAUC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CGUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGUUA U-ACCUCACC ACCCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --AAA)AGG- -----(aau- 3181 aa-)------ A-AGUAAGCA AGA-GAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cucc-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU UAU------- ---------G 3841 A-G-GU-GG- GA-AGC--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa a----)---- ---------- ---------- AAG-AAcauu 4021 ---------- ------ACGA --UACCC-UU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) A-UA-A--GG -A--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- a~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.hispi 5213 bp RNA RNA 27-JUL-1995 DEFINITION Mitochondrion Sigmodon hispidus.; 16S rRNA; ribosomal RNA. ACCESSION X89788 KEYWORDS 16S rRNA; ribosomal RNA. SOURCE Mitochondrion Sigmodon hispidus. ORGANISM Mitochondrion Sigmodon hispidus. REFERENCE 1 (bases 1 to 754) AUTHORS Sullivan,J., Simon,C. and Holsinger,K.E. TITLE Among-site rate variation and phylogenetic analysis of 12S rRNA in sigmodontine rodents JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 754) AUTHORS Sullivan,J. TITLE Direct Submission JOURNAL Submitted (18-JUL-1995) to the EMBL/GenBank/DDBJ databases. J. Sullivan, University of Connecticut, Dep.of Ecology and Evolutionary U-43, Storrs, CT 06269-3043, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X89788 NCBI gi: 927484 BASE COUNT 273 a 178 c 126 g 177 t 4459 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~U--UA -CAC-A-UGC 721 -AAAa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cUAAGCCAGU GUCAA---AU C|CCC-Caaa --au-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uaca- -----)---- 1261 ---------- ---------- --ga--auu- u-gAAGGAGA |--------- gGACAUCA-- 1321 -AGUUCAUu- -----(cua- ---------- ---------- ---------- ------)--- 1381 ---AU|---A GCUAA--AGA C|GUCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACC----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-CUC---c aa-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC CGGU-CA)-U ACGAUU|--- -AACcCCA-a 1981 AAUUA-ACUA U-------ca ccCGGC|GUA AAACGUGUcc --cuag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------ag -uaccccc-- aauaga--au -----|UAAA AUUCAA-CCA ----AUAU(G 2341 UGAAA)AUUC AU-------C GUUG-Aaguu aaA------- ----aucaga -aAC(-GAAA 2401 -)GU|u---- ----auucua ---guaga-- ---------- cuu--aauAC ACGAU-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCA 2521 C--AAUA-AC |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(aaac)a a---A-GUUA 2701 U-U|--U|GC C-UGAG-AAC UACUGGC(-- -CACC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGCUA U-ACCUCACC ACUUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(U U-AAA)AAG- -----(aac- 3181 ca-)------ U-AGUAAGCA AGA-GAAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aauc-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-A-GU-GG- GA-AGC--AA -UGGGCUACA UU--UUCUC- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ca c----)---- ---------- ---------- AAG-AAcauu 4021 ---------- -----aACGA --CACCC-UC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) U-AG-A--GG -A--CAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- a~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.masco 5213 bp RNA RNA 27-JUL-1995 DEFINITION Mitochondrion Sigmodon mascotensis.; 16S rRNA; ribosomal RNA. ACCESSION X89789 KEYWORDS 16S rRNA; ribosomal RNA. SOURCE Mitochondrion Sigmodon mascotensis. ORGANISM Mitochondrion Sigmodon mascotensis. REFERENCE 1 (bases 1 to 754) AUTHORS Sullivan,J., Simon,C. and Holsinger,K.E. TITLE rRNA in sigmodontine rodents Among-site rate variation and phylogenetic analysis of 12S JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 754) AUTHORS Sullivan,J. TITLE Direct Submission JOURNAL Submitted (18-JUL-1995) to the EMBL/GenBank/DDBJ databases. J. Sullivan, University of Connecticut, Dep.of Ecology and Evolutionary U-43, Storrs, CT 06269-3043, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X89789 NCBI gi: 927485 BASE COUNT 266 a 171 c 125 g 188 t 4463 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~U--UA -CAC-A-UGC 721 -AAAg----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cUGUACCAGU GUCAA---AU C|cCc-caaa --au-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uaca- -----)---- 1261 ---------- ---------- --ga--auu- u-gaagrAGA |--------- gGACAUCA-- 1321 -AGUGCAUu- -----(cuc- ---------- ---------- ---------- ------)--- 1381 ---AU|---A GCUAA--AGA C|GUCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACU----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-CUC---c aa-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC CGGU-CA)-U ACGAUU|--- -AACcCCA-a 1981 AAUUA-ACUA U-------uu ccCGGC|GUA AAACGUGUcc --cuag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------ar -uuucccu-- aauaga--au -----|UAAA AUCCAA-CCA ----AUAU(G 2341 UGAAA)AUUC AU-------C GUUG-Agauu aaA------- ----aucaga -aAC(-GAAA 2401 -)GU|u---- ----auucua ---guaga-- ---------- cuu--aauAC ACGAU-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCA 2521 U--AAUA-AC |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)r a---A-GUUA 2701 U-U|--U|GC C-UGAG-AAC UACUGGC(-- -CACC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CUUUAUA-UC CAYCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGCUA U-ACCUCACC ACUUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(U U-AAA)AAG- -----(aau- 3181 ua-)------ U-AGUAAGCA AGA-GAAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aauc-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-A-GU-GG- AA-AGC--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ca c----)---- ---------- ---------- AAG-AAcauu 4021 ---------- -----aACGA --UACCC-UC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) U-AG-A--GG -A--CCAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- a~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.T.kempi 5213 bp RNA RNA 11-JAN-191 DEFINITION Tatera kempi gambiana. ACCESSION No information KEYWORDS No information. SOURCE Tatera kempi gambiana. ORGANISM Tatera kempi gambiana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X84391 LOCUS MTG12SRNA 947 bp DNA ROD 01-JUN-1995 DEFINITION T.gambiana mitochondrial 12S ribosomal RNA. ACCESSION X84391 KEYWORDS 12S rRNA; ribosomal RNA. SOURCE Tatera gambiana. ORGANISM Tatera gambiana Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Myomorpha; Cricetidae; Gerbillinae; Tatera. REFERENCE 1 (bases 1 to 947) AUTHORS Hanni,C. TITLE Direct Submission JOURNAL Submitted (03-FEB-1995) to the EMBL/GenBank/DDBJ databases. C. Hanni, Lab Paleontologie URA327 CNRS, Institut Sciences Evolution, Universite Montpellier 2, Pl. E. Bataillon, 34095 Montpellier, FRANCE REFERENCE 2 (bases 1 to 947) AUTHORS Hanni,C., Laudet,V., Barriel,V. and Catzeflis,F.M. TITLE Evolutionary relationships of Acomys and other murids JOURNAL Unpublished COMMENT NCBI gi: 854344 FEATURES Location/Qualifiers source 1..947 /organism="Tatera gambiana" /clone="CHT4415, CH44154VF" /note="DNA 4415" rRNA 1..947 /product="12S ribosomal RNA" BASE COUNT 342 a 188 c 167 g 250 t ORIGIN BASE COUNT 342 a 188 c 167 g 250 t 4266 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA UAG-UUAAUU -G-AAGG-UG |AG-AU--UA -CAC-A-UGC 721 -AAAu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aUGAACCUGU GCGAA---UU C|CCU-Uaua --au-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--auauu -----)---- 1261 ---------- ---------- --aa--acc- --uAAGGAGA |--------- aGGUAUCA-- 1321 -AGCACAU-- -----(aaac ---------- ---------- ---------- ------)--- 1381 ---AU|---A GCUUC--UGA C|AUCUA-GC --|------- (-cua--)-- -------GC| 1441 CACU------ ---------- ---------- -|-CCCC--( CACG-)--GG AUU----C-A 1501 GCA|GUG-AU AAAAAUUUAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCUA-C- AC-CUU---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-UCA-- 1981 AACUA-ACUA A--------u uuCGGC|GUA AAACGUGUua -uaaac---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -uuacccu-- aauaga--au -----|UGAA ACCCAA-CUA ----AUAC(G 2341 UAGAA)GUUC AU-------C GUUC-GGauC UAA------- ---aaucacu -aAC(-GAAA 2401 -)GU|a---- ----auucua ---guaaau- ---------- cua----uAC ACGAU-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CUU 2521 A--AAUA-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uua(uaac)a a---A-AUUA 2701 U-U|--U|GC C-AGAG-AAC UACGAGC(-- -CACC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGCG- CUUUAUA-UC CGUCUAGA|G GAGCCUGU-U |UUAUA--AU CG(AUAAUCC 2821 C--------- ----)CGUUC U-ACCUUACC AACUCUUGCU ---------- ---------- 2881 (-------uu uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC UUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-UA AAC-|CCU(A --AAA)AGG- -----(aag- 3181 ua-)------ A-AGUAAACG AAA-GAAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aaac- 3781 ---------A UGAAGA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-G-UU-GG- AA-AGU--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- AAG-AAcauu 4021 ---------- ------ACGA --UGUCC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-c-) U-AA-A--GG -A--UCAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-gu-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAGaaAGCU 4261 CUGAAG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaauaaa-- 4381 --------ga aaaaaaaaca aau--acaua --auucuc-a aaauaaac-- ----uauaug 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGG-U AAGUCGUAAC AUGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGA--- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (21)-Myoxi 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.G.mur.1 5213 bp RNA RNA 12-SEP-1996 DEFINITION Mitochondrion Graphiurus murinus.; . ACCESSION U67287 KEYWORDS . SOURCE Mitochondrion Graphiurus murinus. ORGANISM Mitochondrion Graphiurus murinus. REFERENCE 1 (bases 1 to 772) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE Higher level systematics of rodents (Mammalia, Rodentia): evidence from the mitochondrial 12SrRNA gene JOURNAL J. Mammal. Evol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 772) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE Direct Submission JOURNAL Submitted (20-AUG-1996) Wildlife and Fisheries, Texas A&M University, 210 Nagle Hall, College Station, TX 77843-2258, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U67287 BASE COUNT 282 a 163 c 134 g 193 t 4441 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~-~-~GC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCGUCCCUGU GAGAA---UG C|CCU-Cuau --gu-ca--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--auaa- -----)---- 1261 ---------- ---------- --cg--acc- a-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACACa- -----(ccua a--------- ---------- ---------- ------)--- 1381 --uGU|---A GCUCA--AAA C|ACCUU-GC --|------- (-uuuc-)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAA----C-A 1501 GCA|GUG-AU CAAAAUUAAU U-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- GC-UAU---u auua------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAA G--------c uuCGGC|GUA AAGAGUGUuu --aaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------au-- aauaugacaa aauaag--gu -----|UAAA CUCUAA-CUA ----AACU(G 2341 UAAAA)AGUC AU-------A GACA-GAGAA AAA------- ----auaaca -uAC(-GAAA 2401 -)GU|a---- ----accuua ---cuauaua u--------- ucu-gaauAC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CAU 2521 A--AGUU-UU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -au(caac)a c---A-ACAA 2701 U-U|--C|GC C-AGAA-AAC UAUAGGC(-- -AACA--)GC CAA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUCUUGCC ---------- ---------- 2881 (-------ac cu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC UUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUC(A --AUA)GAG- -----(agu- 3181 ua-)------ A-AGUAAGCU CGA-GCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uagac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU UAU------- ---------G 3841 A-A-GU-GG- AA-AGA--AA -UGGGCUACA UU--UCCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu uc---)---- ---------- ---------- AAG-UAcauu 4021 c--------- ------aCGU --AAACU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-A--AG -U--AUAAG- -GAGGAUUUA 4141 G-U--AGUAA G-CUAAGA(- auaga-ga-- --)GCUUAGC U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.G.mur.2 5213 bp RNA RNA 07-JAN-1999 DEFINITION Mitochondrion Graphiurus murinus.; 12S ribosomal RNA; 12S rRNA; mitochondrion. ACCESSION AJ2251 8 KEYWORDS 12S ribosomal RNA; 12S rRNA; mitochondrion. SOURCE Mitochondrion Graphiurus murinus. ORGANISM Mitochondrion Graphiurus murinus. REFERENCE 1 (bases 1 to 967) AUTHORS Bentz,S. and Montgelard,C. TITLE Gliridae) Contribution of cytochrome b and 12s rRNA mitochondrial genes to the systematic position of Graphiurus (Rodentia, JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 967) AUTHORS Montgelard,C. TITLE Direct Submission JOURNAL Submitted (13-MAR-1998) Montgelard C., Institut des Sciences de l'Evolution (UMR 5554 CNRS), Laboratoire de Paleontologie, Paleobiologie et Phylogenie, Universite de Montpellier II, CC64, Place E. Bataillon, 34095 Montpellier cedex 5, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AJ225118 BASE COUNT 348 a 200 c 171 g 248 t 4246 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|GGCCU-UC UUA-UUAAUU -U-AUAG-CA |AA-UU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCGUCCCUGU GAGAA---UG C|CCU-Cuau -guc-au--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uuaa- -----)---- 1261 ---------- ---------- ---g--acc- a-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACAC-- -----(acuu aau------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--AAA C|ACCUU-GC --|------- (uucc--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAA----C-A 1501 GCA|GUG-AU CAAAAUUAAU A-cAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- GC-UAU---a au-aa----- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAA G--------c uuCGGC|GUA AAGAGUGUu- uaagag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u aacuuaacag aauaag--gu -----|UAAA CUCUAA-CUA ----AGCU(G 2341 UAGAA)AGCC AU-------A GAUA-AAGAA AAA------- ---auaa-ca -uAC(-GAAG 2401 -)GU|a---- ----accuua ---cuauaua ---------- uucugaguAC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CAU 2521 A--AGUC-UU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -au(caac)a c---A-AAAA 2701 U-U|--C|GC C-AGAG-AAC UAUAGGC(-- -AACA--)GC -aA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUCUUGUC ---------- ---------- 2881 (-------ac cu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC UUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUC(A --ACA)GAG- -----(aau- 3181 ua-)------ A-AGUAAGCU CGA-GCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cagac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU UAU------- ---------G 3841 A-A-GU-GG- AA-AGA--AA -UGGGCUACA UU--UCCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(uuu uuuuc)---- ---------- ---------- AAG-UAcauu 4021 c--------- ------ACGU --AAACU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-A--AG -U--AUAAG- -GAGGAUUUA 4141 G-U--AGUAA G-CUAAGA(- auaga-ga-- --)GCUUAGC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaacaua-- 4381 --------aa uaaauuuaua uuaccuaauu uauuaauaaa a--------- ----auugug 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AUGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAAUA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.D.nit.1 5213 bp RNA RNA 26-NOV-1996 DEFINITION Mitochondrion Dryomys nitedula.; 12S ribosomal RNA. ACCESSION D89005 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Dryomys nitedula. ORGANISM Mitochondrion Dryomys nitedula. REFERENCE 1 (bases 1 to 835) AUTHORS Suzuki,H. TITLE Direct Submission JOURNAL Japan (E-mail:htsuzuki@eesbio.hokudai.ac.jp, Tel:011-706-2279, Fax: 011-706-2225) Submitted (12-NOV-1996) to the DDBJ/EMBL/GenBank databases. Hitoshi Suzuki, Hokkaido University, Grad. Sch. Environmental Earth Science; Kita 10, Nishi 5, Kita-ku, Sapporo, Hokkaido 060, STANDARD No information REFERENCE 2 (sites) AUTHORS Suzuki,H., Minato,S., Sakurai,S., Tsuchiya,K. and Fokin,I.M. TITLE Phylogenetic position and geographic differentiation of the Japanese dormouse, Glirulus japonicus, revealed by variations among rDNA, mtDNA and the Sry Gene JOURNAL Zool. Sci. (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: D89005 BASE COUNT 300 a 181 c 151 g 203 t 4378 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UC UUA-UUAGUC -U-AUAA-CA |AG-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACACCUGU GAGAA---UG C|CCU--cua -cgu-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--auuca u----)---- 1261 ---------- ---------- --ua--auc- c-aaAGGAGC |--------- aGGUAUCA-- 1321 -AGCACACU- -----(uuaa ---------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--AGA C|ACCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU UAAGAUUAAG C-UAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCUA-U- GU-UAU---a guuaa----- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAA G--------c ccCGGC|GUA AAGAGUGUuu --uaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ----ua---- -auccacaaa aauaaa--gu -----|UAAA UCUUGU-CUA ----AGCC(G 2341 UAAAA)AGCA AU-------A GACA-AAgau aAG------- ----acaaag -cAC(-GGAA 2401 -)GU|c---- ----acuuua ---auauuac ---------- ucu-gaacAC ACGAU-AGCU 2461 A-AGA---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 A--AAUU-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -gc(aaac)a c---A-AAUA 2701 U-U|--C|GC C-AGAG-UAC UACAAGC(-- -CACA--)GC UCA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC ACUCCUUGuu ---------- ---------- 2881 (---c---au ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --ACA)AAG- -----(aau- 3181 aa-)------ A-AGUAAGCA CAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aauc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 G-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UACUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ag cc---)---- ---------- ---------- AAG-UAuaua 4021 uu-------- ------aCGa --UACCU-UU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-GA-A--AG -A--AAAAG- -GAGGAUUUA 4141 G-U--AGUAA G-CUAAGA(- auaga-gu-- --)GCUUAGC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 AUGAAG-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.nit.2 5213 bp RNA RNA 07-JAN-1999 DEFINITION Mitochondrion Dryomys nitedula.; 12S ribosomal RNA; 12S rRNA; mitochondrion. ACCESSION AJ2251 9 KEYWORDS 12S ribosomal RNA; 12S rRNA; mitochondrion. SOURCE Mitochondrion Dryomys nitedula. ORGANISM Mitochondrion Dryomys nitedula. REFERENCE 1 (bases 1 to 967) AUTHORS Bentz,S. and Montgelard,C. TITLE Contribution of cytochrome b and 12s rRNA mitochondrial genes to the systematic position of Graphiurus (Rodentia, Gliridae) JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 967) AUTHORS Montgelard,C. TITLE Direct Submission JOURNAL Submitted (13-MAR-1998) Montgelard C., Institut des Sciences de l'Evolution (UMR 5554 CNRS), Laboratoire de Paleontologie, Paleobiologie et Phylogenie, Universite de Montpellier II, CC64, Place E. Bataillon, 34095 Montpellier cedex 5, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AJ225119 BASE COUNT 344 a 228 c 174 g 221 t 4246 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UC UUA-UUAGCC -U-AUAA-CA |AG-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACACCUGU GAGAA---UG C|CCU-Cuac -guu-aa--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuuau -----)---- 1261 ---------- ---------- --ua--acc- c-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACAC-- -----(ucua aau------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--AAA C|ACCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--G- aUA----C-A 1501 GCA|GUG-AU UAAAAUUAAG C-cAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCUA-U- GU-UAU---a gccaa----- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUUA-AUAA G--------c ccCGGC|GUA AAGGGUGUu- uuagau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- aaucuacaaa aauaaa--gu -----|uaaa ccuUGU-CUA ----AGCU(G 2341 UAAAA)AGCA AU-------A GCCA-AAGAU AAG------- ---acag-ag -cAC(-GAAA 2401 -)GU|c---- ----acuuua ---auacuca ---------- cucugaacAC ACGAU-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 A--AAUU-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -au(aaac)a c---A-AAUA 2701 U-U|--C|GC C-AGAG-UAC UACAAGC(-- -CAUA--)GC UCA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCACA-UC CCUCUAGA|G GAGCCUGU-U |CCAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUC A-ACCUCACC ACUCCUUGUU ---------- ---------- 2881 (-------ca uca)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---c---agc cUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --ACA)AAG- -----(aac- 3181 aa-)------ A-AGUAAGCA CAA-GUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 G-A-GU-GG- AA-AGU--AA -UGGGCUACA UU--UACUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ag cc---)---- ---------- ---------- AAG-UAcaua 4021 uu-------- ------ACGA --UACCU-UU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-GA-A--AG -A--AAAAG- -GAGGAUUUA 4141 G-U--AGUAA G-CUAAGA(- guaga-gu-- --)GCUUAGC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagcacu-- 4381 --------ua uauagaccca uaa--acaua --uuaacucu agcacac--- ----agugua 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AUGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAAUA AC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.E.querc 5213 bp RNA RNA 07-JAN-1999 DEFINITION Mitochondrion Eliomys quercinus.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION Y16896 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Eliomys quercinus. ORGANISM Mitochondrion Eliomys quercinus. REFERENCE 1 (bases 1 to 963) AUTHORS Bentz,S. and Montgelard,C. TITLE to the systematic position of Graphiurus (Rodentia, Gliridae ) Contibution of cytochrome b and 12S rRNA mitochondrial genes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 963) AUTHORS Hanni,C. TITLE Direct Submission JOURNAL Submitted (16-MAR-1998) Hanni C., Institut des Sciences de l'Evolution (UMR 5554 CNRS), Laboratoire de Paleontologie, Paleobiologie et Phylogenie, Universite de Montpellier II, cc 064, Place E. Bataillon, 34095 Montpellier cedex 5, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y16896 BASE COUNT 347 a 212 c 177 g 222 t 4255 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|GGCCU-UC UUA-UUGAUU -C-UUAA-CA |AG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCGCCCCUGU GAGAA---UG C|CCU-Auaa -auu-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(acuaugu -----)---- 1261 ---------- ---------- --aa--acc- u-aAAGGAGC |--------- gGGUAUAA-- 1321 -AGCACAC-- -----(gcaa uc-------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--AAA C|ACCUC-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACA----C-A 1501 GCA|GUG-AU UAAAAUUAAG C-aAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCUA-U- GU-UAA---u aua------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -CAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUCA-AUAA G--------u uuCGGC|GUA AAGAGUGUu- -uuaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------uu aaucaaauac aauaaa--gu -----|UAAG UCUCAU-CUA ----AACC(G 2341 UAAAA)AGUC CU-------A GAUG-AAGAU AAA------- ---auaa-gg -aAC(-GAAA 2401 -)GU|c---- ----acuuua ---uaaauua u--------- ucu-gaauAC ACGAU-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CCUAAA-CAC 2521 A--AAAA-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(caac)a a---A-AUUG 2701 U-U|--C|GC C-AGAG-AAC UACGAGC(-- -CACA--)GC UCA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUCACC UCUUCUUGCU ---------- ---------- 2881 (-------ac uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --ACA)AAG- -----(gac- 3181 aa-)------ A-AGUAAGCA CAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----gaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------G 3841 A-A-UA-GG- GA-AGA--AA -UGGGCUACA UU--UACUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-u- au---)---- ---------- ---------- AAG-UAaau- 4021 ---------- ------ACGC --AAACU-CU C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) C-GA-G--AG -C--AAAAG- -GCGGAUUUA 4141 G-U--AGUAA G-UUAAGA(- auaga-ga-- --)GCUUAAC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UCG--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaguauu-- 4381 -------uaa uaaacaaaca gau-acccaa --augcacgu aaacau---- ----aauaca 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AUGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GU- GCUUGGANNN NN-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.ave.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Muscardinus avellanarius. ACCESSION No information KEYWORDS No information. SOURCE Muscardinus avellanarius. ORGANISM Muscardinus avellanarius. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X84384 LOCUS MMAS12RNA 956 bp DNA ROD 13-FEB-1995 DEFINITION M.avellanarius mitochondrial 12S ribosomal RNA. ACCESSION X84384 KEYWORDS 12S rRNA; ribosomal RNA. SOURCE Muscardinus avellanarius. ORGANISM Muscardinus avellanarius Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Gliridae; Muscardinus. REFERENCE 1 (bases 1 to 956) AUTHORS Davodeau,F. TITLE Direct Submission JOURNAL Submitted (19-JAN-1995) to the EMBL/GenBank/DDBJ databases. F. Davodeau, INSERM U211, Institut de Biologie, 9 Quai Moncousu, 44035 Nantes Cedex, FRANCE REFERENCE 2 (bases 1 to 956) AUTHORS Hanni,C., Laudet,V., Barriel,V. and Catzeflis,F.M. TITLE Evolutionary relationships of Acomys and other murids JOURNAL Unpublished COMMENT NCBI gi: 671556 FEATURES Location/Qualifiers source 1..956 /organism="Muscardinus avellanarius" /tissue_type="T-358" /clone="CHT358, CHT3584VF" rRNA 1..956 /product="12S ribosomal RNA" BASE COUNT 334 a 202 c 170 g 250 t ORIGIN BASE COUNT 334 a 202 c 170 g 250 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC C|AGCCU-UC UUA-UUAAUU -U-AUAG-CA |GG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCGACCCUGU GAGAA---UG C|CCU-Cuau --gu-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(auacaug u-u--)---- 1261 ---------- ---------- --ua--acc- u-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACACU- -----(auaa u--------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--AAA C|ACCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU UAAAAUUAAG u-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCCA-U- GU-UAU---a uua------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAA G--------u caCGGC|GUA AAGAGUGUUU --uaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- uuuuaacuau aauaaa--gu -----|UAAA CUUUAA-CUA ----AGCC(G 2341 UAAAA)AGCC CU-------A GUUA-AAagU AAA------- ----auaacg -aAC(-GAAA 2401 -)GU|c---- ----acuuua ---auauuc- ---------- ucu-gaguAC ACGAU-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 A--AACC-CU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(uaac)c u---A-AcuG 2701 U-U|--C|GC C-AGAG-AAC UACAAGC(-- -CAAA--)GC UAA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUCACC AUUUCUUGUC ---------- ---------- 2881 (-------ac ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --AUA)AGG- -----(aga- 3181 ua-)------ A-AGUAAGCU CAA-GCAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----ugac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU UAU------- ---------G 3841 A-A-AU-GG- GA-AGA--AA -UGGGCUACA UU--UACUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ca cc---)---- ---------- ---------- AAG-UAuauc 4021 c--------- ------ACGU --UAACU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-c-) U-GA-G--AG -U--AGAAG- -GAGGAUUUA 4141 G-U--AGUAA G-CUAGGA(- auaga-ga-- --)GCCUAAC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--GGCC 4261 AUUAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagcau--- 4381 --------uu acuauuaaua uua--guuua --uauua-cc -uuacauac- -----augca 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AuGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAnnn nn-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.ave.2 5213 bp RNA RNA 26-NOV-1996 DEFINITION Mitochondrion Muscardinus avellanarius.; 12S ribosomal RNA. ACCESSION D89006 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Muscardinus avellanarius. ORGANISM Mitochondrion Muscardinus avellanarius. REFERENCE 1 (bases 1 to 832) AUTHORS Suzuki,H. TITLE Direct Submission JOURNAL Earth Science; Kita 10, Nishi 5, Kita-ku, Sapporo, Hokkaido 060, Japan (E-mail:htsuzuki@eesbio.hokudai.ac.jp, Tel:011-706-2279, Fax: 011-706-2225) Submitted (12-NOV-1996) to the DDBJ/EMBL/GenBank databases. Hitoshi Suzuki, Hokkaido University, Grad. Sch. Environmental STANDARD No information REFERENCE 2 (sites) AUTHORS Suzuki,H., Minato,S., Sakurai,S., Tsuchiya,K. and Fokin,I.M. TITLE Phylogenetic position and geographic differentiation of the Japanese dormouse, Glirulus japonicus, revealed by variations among rDNA, mtDNA and the Sry Gene JOURNAL Zool. Sci. (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: D89006 BASE COUNT 300 a 171 c 144 g 217 t 4381 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC C|AGCCU-UC UUA-UUAAUU -U-AUAA-CA |AG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCGACCCUGU GAaAA---UG C|CCU-Cuau --gu-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(acaaaua uu---)---- 1261 ---------- ---------- --ua--acc- u-aAAGGUGC |--------- aGGUAUCA-- 1321 -AGCACACU- -----(auu- ---------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--AAA C|ACCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAA----C-A 1501 GCA|GUG-AU UAAAAUUAAG A-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCUA-U- GU-UAU---a aaua------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAA G--------u caCGGC|GUA AAGAGUGUUU --uaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- uuauuaccuu aauaaa--gu -----|UAAA CUUUAA-CUA ----AGCU(G 2341 UAAAA)AGCC CU-------A GUCA-AAAGU AAA------- ----guaaug -aAC(-GAAA 2401 -)GU|c---- ----acuuua ---guauuu- ---------- ucu-gaacAC ACGAU-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 A--AACU-CU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(uaac)c u---A-AUUG 2701 U-U|--C|GC C-AGAG-AAC UACAAGC(-- -CAAA--)GC UAA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUCACC AUUUCUUGUC ---------- ---------- 2881 (-------ac ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --ACA)AGG- -----(agu- 3181 aa-)------ A-AGUAAGCU CAA-GCAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----ugac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU UAU------- ---------G 3841 A-A-AU-GG- AA-AGA--AA -UGGGCUACA UU--UAUUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ca cc---)---- ---------- ---------- AAA-UAcauu 4021 u--------- ------ACGU --uaACU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-GA-G--AG -U--AGAAG- -GAGGAUUUA 4141 G-U--AGUAA G-CUAGGA(- guaga-ga-- --)GCCUAAC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--GGCC 4261 AUUAAG~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.jap.1 5213 bp RNA RNA 26-NOV-1996 DEFINITION Mitochondrion Glirulus japonicus.; 12S ribosomal RNA. ACCESSION D89007 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Glirulus japonicus. ORGANISM Mitochondrion Glirulus japonicus. REFERENCE 1 (bases 1 to 825) AUTHORS Suzuki,H. TITLE Direct Submission JOURNAL Hitoshi Suzuki, Hokkaido University, Grad. Sch. Environmental Earth Science; Kita 10, Nishi 5, Kita-ku, Sapporo, Hokkaido 060, Japan (E-mail:htsuzuki@eesbio.hokudai.ac.jp, Tel:011-706-2279, Fax: 011-706-2225) Submitted (12-NOV-1996) to the DDBJ/EMBL/GenBank databases. STANDARD No information REFERENCE 2 (sites) AUTHORS Suzuki,H., Minato,S., Sakurai,S., Tsuchiya,K. and Fokin,I.M. TITLE Phylogenetic position and geographic differentiation of the Japanese dormouse, Glirulus japonicus, revealed by variations among rDNA, mtDNA and the Sry Gene JOURNAL Zool. Sci. (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: D89007 BASE COUNT 296 a 176 c 143 g 210 t 4388 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|AGCCU-UC UUA-UUAAUU -U-AUAG-UA |AG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCGAUCCUGU GAGAA---UA C|CCU-cuu- --ug-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--acgcu -----)---- 1261 ---------- ---------- --ga--caa- a--aAGGAGU |--------- aGGUAUCA-- 1321 -AGUUCACU- -----(uuac ---------- ---------- ---------- ------)--- 1381 --AGU|---U GCUCA--AGA C|ACCUU-GC --|------- (-uaa--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU UAAAAUUAAG U-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCUA-U- AC-UAU---u uaauca---- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAA G--------c uuCGGC|GUA AAGAGUGUuu --uaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ----gu---- ---uaacuac aauaag--gu -----|UAAA UUUUAU-CUA ----AGCC(G 2341 UAAAA)AGCC CU-------A GCUA-AAgga aaA------- ----auaaua -uAC(-GAAA 2401 -)GU|c---- ----accuua ---uaacaa- ---------- ucu-gaauAC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CAA 2521 A--AAUA-AC |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(uaac)a c---A-GUUA 2701 U-U|--C|GC C-AGAG-UAC UACAAGC(-- -CACA--)GC UCA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUCACC UCUUCUUGCC ---------- ---------- 2881 (-------ac ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC UUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --ACA)AGG- -----(cac- 3181 cc-)------ A-AGUAAGCA CAA-AUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-A-GA-GG- AA-AGA--AA -UGGGCUACA UU--UCCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua u----)---- ---------- ---------- AAG-UAuauc 4021 ---------- ------aCGC --AAACU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-A--AG -U--ACAAG- -GAGGAUUUA 4141 G-U--AGUAA G-CUAUGA(- auaga-ga-- --)GCCUAGC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--GGCC 4261 AUGAAG-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.G.jap.2 5213 bp RNA RNA 26-NOV-1996 DEFINITION Mitochondrion Glirulus japonicus.; 12S ribosomal RNA. ACCESSION D89008 KEYWORDS 12S ribosomal RNA. SOURCE Mitochondrion Glirulus japonicus. ORGANISM Mitochondrion Glirulus japonicus. REFERENCE 1 (bases 1 to 824) AUTHORS Suzuki,H. TITLE Direct Submission JOURNAL Earth Science; Kita 10, Nishi 5, Kita-ku, Sapporo, Hokkaido 060, Japan (E-mail:htsuzuki@eesbio.hokudai.ac.jp, Tel:011-706-2279, Fax: 011-706-2225) Submitted (12-NOV-1996) to the DDBJ/EMBL/GenBank databases. Hitoshi Suzuki, Hokkaido University, Grad. Sch. Environmental STANDARD No information REFERENCE 2 (sites) AUTHORS Suzuki,H., Minato,S., Sakurai,S., Tsuchiya,K. and Fokin,I.M. TITLE Phylogenetic position and geographic differentiation of the Japanese dormouse, Glirulus japonicus, revealed by variations among rDNA, mtDNA and the Sry Gene JOURNAL Zool. Sci. (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: D89008 BASE COUNT 302 a 175 c 143 g 204 t 4389 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)G-CC U|GGCCU-UC UUA-UUGAUU -A-AUAG-UA |AA-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCGAUCCUGU GAGAA---UG C|CCU-cua- --ug-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--acacu -----)---- 1261 ---------- ---------- --ga--caa- a--aAGGAGU |--------- AGGUAUCA-- 1321 -AGUUCACU- -----(uuau ---------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--AAA C|ACCUU-GC --|------- (-uaa--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU UAAAAUUAAG U-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCUA-U- AC-UAU---u aaca------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAA G--------c uuCGGC|GUA AAGAGUGUuu --uaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ----gu---- --uaacuuau aauaag--gu -----|UAAA UUUUAU-CUA ----AGCC(G 2341 UAAAA)AGCC CU-------A GCUA-AAgga aaA------- ----auaaua -cAC(-GAAA 2401 -)GU|c---- ----accuua ---uaaaaa- ---------- ucu-gaauAC ACGAU-AGCU 2461 A-AGA---CC CAAACUGAG( AUUAGAUAC) CUCA-CUAU| -GCUU-AGC- CAUAAA-CAA 2521 A--AAUA-AC |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(uaac)a c---A-GUUA 2701 U-U|--C|GC C-AGAG-AAC UACAAGC(-- -CACA--)GC UCA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC UCUUCUUGCC ---------- ---------- 2881 (-------ac ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC UUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(C --ACA)AGG- -----(uac- 3181 cc-)------ A-AGUAAGCA CAA-AUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----caac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-A-GA-GG- AA-AGA--AA -UGGGCUACA UU--UCCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua c----)---- ---------- ---------- AAG-UAcauc 4021 ---------- ------aCGU --AAACU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-AA-A--AG -U--AUAAG- -GAGGAUUUA 4141 G-C--AGUAA G-CUAUGA(- auaga-ga-- --)GCCUAGC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--GGCC 4261 AUGAAG-~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.gli.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Myoxus glis. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Myoxus glis. ORGANISM Mitochondrion Myoxus glis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X84385 LOCUS MGG12SRNA 949 bp DNA ROD 01-JUN-1995 DEFINITION G.glis mitochonrial 12S ribosomal RNA. ACCESSION X84385 KEYWORDS 12S rRNA; ribosomal RNA. SOURCE Glis glis. ORGANISM Glis glis Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Rodentia; Gliridae; Glis. REFERENCE 1 (bases 1 to 949) AUTHORS Hanni,C. TITLE Direct Submission JOURNAL Submitted (03-FEB-1995) to the EMBL/GenBank/DDBJ databases. C. Hanni, Lab Paleontologie URA327 CNRS, Institut Sciences Evolution, Universite Montpellier 2, Pl. E. Bataillon, 34095 Montpellier, FRANCE REFERENCE 2 (bases 1 to 949) AUTHORS Hanni,C., Laudet,V., Barriel,V. and Catzeflis,F.M. TITLE Evolutionary relationships of Acomys and other murids JOURNAL Unpublished COMMENT NCBI gi: 854267 FEATURES Location/Qualifiers source 1..949 /organism="Glis glis" /clone="CHT3762, CHT37624VF" /note="DNA 3762" rRNA 1..949 /product="12S ribosomal RNA" BASE COUNT 328 a 220 c 169 g 232 t ORIGIN BASE COUNT 328 a 220 c 169 g 232 t 4264 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC C|AGCCU-UC UUA-UUAGUU -U-AUAG-CA |AG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCGACCCUGU GAGAA---UG C|CCU-cuac --gu-ca--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----aac -----)---- 1261 ---------- ---------- --ag--acu- u-aaAGGAGC |--------- aGGUAUCA-- 1321 -AGCACAC-- -----(auca cc-------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--AAA C|ACCUU-GC --|------- (-uaa--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UUA----C-A 1501 GCA|GUG-AU UAAAAUUAAA A-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCUA-U- GC-UAU---a aucua----- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAA G--------u uuCGGC|GUA AAGGGUGUu- -uagau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -uauuccuac aauaag--gu -----|UAAA UUCUGU-CUA ----AGCU(G 2341 UAAAA)AGCC UU-------U GCCA-GAGaA AAA------- ----auaaca -uAC(-GAAA 2401 -)GU|c---- ----accuua ---cuaaa-- ---------- aucugaauAC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 A--AACC-CU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(uaac)g c---A-ACCG 2701 U-U|--C|GC C-AGAG-UAC UACAAGC(-- -CACA--)GC UCA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUCUUGCU ---------- ---------- 2881 (-------ac ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC UUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --ACA)AGG- -----(aau- 3181 ca-)------ A-AGUAAGCC CAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-A-GU-GG- AA-AGA--AA -UGGGCUACA UU--UCCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uc cc---)---- ---------- ---------- AAG-UAcauu 4021 c--------- ------ACGU --CAACU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-A--AG -U--AAAAG- -GCGGAUUUA 4141 G-U--AGUAA G-CUAAGA(- auaga-ga-- --)GCCUAGC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagcaug-- 4381 --------aa uauaauuuau cua--uaau- --uaaau--- -cucugcac- ----uuugca 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AUGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGA--- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.gli.2 5213 bp RNA RNA 09-MAY-1998 DEFINITION Mitochondrion Myoxus glis.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase 6; ATPase 8 gene; COI gene; COII gene; COIII gene; cytb gene; cytochome oxidase II; cytochrome b; cytochrome oxidase I; cytochrome oxidase III; D-loop; mitochondrial; NADH-ubiquinone oxidoreductase subunit 4L; NADH-ubiquinone oxidoreductase subunit I; NADH-ubiquinone oxidoreductase subunit II; NADH-ubiquinone oxidoreductase subunit III; NADH-ubiquinone oxidoreductase subunit IV; NADH-ubiquinone oxidoreductase subunit V; NADH-ubiquinone oxidoreductase subunit VI; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu(CUN); transfer RNA-Leu(UUR); transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser(AGY); transfer RNA-Ser(UCN); transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. ACCESSION AJ0015 2 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase 6; ATPase 8 gene; COI gene; COII gene; COIII gene; cytb gene; cytochome oxidase II; cytochrome b; cytochrome oxidase I; cytochrome oxidase III; D-loop; mitochondrial; NADH-ubiquinone oxidoreductase subunit 4L; NADH-ubiquinone oxidoreductase subunit I; NADH-ubiquinone oxidoreductase subunit II; NADH-ubiquinone oxidoreductase subunit III; NADH-ubiquinone oxidoreductase subunit IV; NADH-ubiquinone oxidoreductase subunit V; NADH-ubiquinone oxidoreductase subunit VI; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu(CUN); transfer RNA-Leu(UUR); transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser(AGY); transfer RNA-Ser(UCN); transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. SOURCE Mitochondrion Myoxus glis. ORGANISM Mitochondrion Myoxus glis. REFERENCE 1 (bases 1 to 16602) AUTHORS Reyes,A., Pesole,G. and Saccone,C. TITLE Complete mitochondrial DNA sequence of the fat dormouse, Glis glis: Further evidence of rodent paraphyly JOURNAL Mol. Biol. Evol. 15, 499-505 (1998) STANDARD No information REFERENCE 2 (bases 1 to 16602) AUTHORS Reyes,A. TITLE Direct Submission JOURNAL Submitted (15-SEP-1997) Reyes A., Centro Studio sui Mitocondri e Metabolismo Energentico, Consiglio Naz. delle Ricerche (CNR), Via Amendola, 165/A, Bari, 70126, ITALY STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AJ001562 Overlapping sequence:Y11137. BASE COUNT 329 a 220 c 170 g 235 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC C|AGCCU-UC UUA-UUAGUU -U-AUAG-CA |AG-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCGACCCUGU GAGAA---UG C|CCU-Cuac -guc-au--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--aca-- -----)---- 1261 ---------- ---------- ---g--acu- u-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACAC-- -----(auca cc-------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--AAA C|ACCUU-GC --|------- (-uaa--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UUA----C-A 1501 GCA|GUG-AU UAAAAUUAAA A-uAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCUA-U- GC-UAU---a aucua----- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAA G--------u uuCGGC|GUA AAGGGUGUu- -uagau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -uauuccuac aauaag--gu -----|UAAA UUCUGU-CUA ----AGCU(G 2341 UAAAA)AGCC UU-------U GCCA-GAGAA AAA------- ---auaa-ca -uAC(-GAAA 2401 -)GU|c---- ----accuua ---cuaaa-- ---------- aucugaauAC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 A--AACC-CU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(uaac)g c---A-ACCG 2701 U-U|--C|GC C-AGAG-UAC UACAAGC(-- -CACA--)GC UCA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUCUUGCU ---------- ---------- 2881 (-------ac ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC UUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --ACA)AGG- -----(aau- 3181 ca-)------ A-AGUAAGCC CAA-GUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-A-GU-GG- AA-AGA--AA -UGGGCUACA UU--UCCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uc cc---)---- ---------- ---------- AAG-UAcauu 4021 c--------- ------aCGU --CAACU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-A--AG -U--AAAAG- -GCGGAUUUA 4141 G-U--AGUAA G-CUAAGA(- auaga-ga-- --)GCCUAGC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagcaug-- 4381 --------aa uauaauuuau cua--uaau- --uaaau--- -cucugcac- ----uuugca 4441 a--------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AUGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAGUA AU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (21)-Pedet 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.P.cap.1 5213 bp RNA RNA 28-MAR-1997 DEFINITION Mitochondrion Pedetes capensis.; . ACCESSION U59169 KEYWORDS . SOURCE Mitochondrion Pedetes capensis. ORGANISM Mitochondrion Pedetes capensis. REFERENCE 1 (bases 1 to 780) AUTHORS Matthee,C.A. and Robinson,T.J. TITLE based on mitochondrial DNA sequences Molecular phylogeny of the springhare, Pedetes capensis, JOURNAL Mol. Biol. Evol. 14 (1), 20-29 (1997) STANDARD No information REFERENCE 2 (bases 1 to 780) AUTHORS Matthee,C.A. TITLE Direct Submission JOURNAL Submitted (23-MAY-1996) Zoology & Entomology, University of Pretoria, Lynnwood road, Pretoria, Gauteng 0002, South Africa STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U59169 BASE COUNT 282 a 157 c 135 g 206 t 4433 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~G-CA |AA-AC--UA -CAC-A-UGC 721 -AAGA----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCAUACCUGU GAGAA---UA C|CCU-Uagu --au-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uaaac -----)---- 1261 ---------- ---------- --ug--aua- u-aAAGGAGU |--------- gGGUAUCA-- 1321 -AGCACACU- -----(auau ---------- ---------- ---------- ------)--- 1381 --agU|---A GCUAA--AGA c|AUCUU-GC --|------- (-cca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU UAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- GC-UAU---u ua-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-UA)-U UCGAUU|--- -AAC-UCA-- 1981 AGUUA-AUAG C--------a uuCGGC|GUA AAGCGUGUua --uauu---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------ua -uaagauaag auuaaa--gu -----|UAAG CUAUAA-CUA ----AGCC(G 2341 UAAAA)AGCC AU-------A GUUA-GUaua aaA------- ----auaaac -aAC(-GAAG 2401 -)GU|g---- ----acuuua ---uaagucu a--------- gau----uAC ACGAC-AGCU 2461 A-GAU---CC CAAACUGAG( AUUAGAUAC) CUCA-CUAU| -GUCU-AGC- CGUAAA-CUU 2521 A--AACU-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a auu(caac)a a---A-AUAG 2701 U-U|--C|GC C-CGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGCUU U-ACCUUACC ACAUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --ACA)AAG- -----(aaa- 3181 aa-)------ A-AGUAAGCA CAA-GCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuacc- 3781 ---------A UUAAAA-CGU U-AGGUCAAG G|CGUA|GCU UAU------- ---------G 3841 A-G-GU-GG- AA-AGU--AA -UGGGCUACA UU--UUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu ua---)---- ---------- ---------- CAG-AAcaaa 4021 uuuau----- ------aCGc --UAUCU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-G--AG -A--CAAAG- -GCGGAUU-- 4141 --U--AGUAA A-UUAAGA(- uuaga-ga-- --)GCUUAAU ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.cap.2 5213 bp RNA RNA 28-MAR-1997 DEFINITION Mitochondrion Pedetes capensis.; . ACCESSION U59170 KEYWORDS . SOURCE Mitochondrion Pedetes capensis. ORGANISM Mitochondrion Pedetes capensis. REFERENCE 1 (bases 1 to 783) AUTHORS Matthee,C.A. and Robinson,T.J. TITLE based on mitochondrial DNA sequences Molecular phylogeny of the springhare, Pedetes capensis, JOURNAL Mol. Biol. Evol. 14 (1), 20-29 (1997) STANDARD No information REFERENCE 2 (bases 1 to 783) AUTHORS Matthee,C.A. TITLE Direct Submission JOURNAL Submitted (23-MAY-1996) Zoology & Entomology, University of Pretoria, Lynnwood road, Pretoria, Gauteng 0002, South Africa STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U59170 BASE COUNT 283 a 155 c 135 g 210 t 4430 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~G-CA |AA-AC--UA -CAC-A-UGC 721 -AAGa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- uCAUACCUGU GAGAA---UA C|CCU-Uagu --au-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uaaac -----)---- 1261 ---------- ---------- --ug--aua- u-aAAGGAGU |--------- gGGUAUCA-- 1321 -AGCACACU- -----(auau ---------- ---------- ---------- ------)--- 1381 --AGU|---A GCUAA--AGA C|AUCUU-GC --|------- (-cca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU UAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- GC-UAU---u ua-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCGCC-GC -GGU-UA)-U UCGAUU|--- -AAC-UCA-- 1981 AGUUA-AUAG C--------a uuCGGC|GUA AAGCGUGUua --uauu---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ----ua---- -uaagauaag auuaaa--gu -----|UAAG CUAUAA-CUA ----AGCC(G 2341 UAAAA)AGCC AU-------A GUUA-GUAUA AAA------- ----auaaac -aAC(-GAAA 2401 -)GU|g---- ----acuuua ---uaaguc- ---------- uau--auuAC ACGAC-AGCU 2461 A-GAU---CC CAAACUGAG( AUUAGAUAC) CUCA-CUAU| -GUCU-AGC- CGUAAA-CUU 2521 A--AACU-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a auu(caac)a a---A-AUAG 2701 U-U|--C|GC C-CGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGCUU U-ACCUUACC ACAUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --ACA)AAG- -----(aaa- 3181 aa-)------ A-AGUAAGCA CAA-GCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuacc- 3781 ---------A UUAAAA-CGU U-AGGUCAAG G|CGUA|GCU UAU------- ---------G 3841 A-G-GU-GG- AA-AGU--AA -UGGGCUACA UU--UUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu ua---)---- ---------- ---------- CAG-AAcaaa 4021 uuuau----- ------aCGU --UAUCU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-G--AG -A--CAAAG- -gcGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- uuaga-ga-- --)GCUUAAU ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.cap.3 5213 bp RNA RNA 28-MAR-1997 DEFINITION Mitochondrion Pedetes capensis surdaster.; . ACCESSION U59171 KEYWORDS . SOURCE Mitochondrion Pedetes capensis surdaster. ORGANISM Mitochondrion Pedetes capensis surdaster. REFERENCE 1 (bases 1 to 781) AUTHORS Matthee,C.A. and Robinson,T.J. TITLE Molecular phylogeny of the springhare, Pedetes capensis, based on mitochondrial DNA sequences JOURNAL Mol. Biol. Evol. 14 (1), 20-29 (1997) STANDARD No information REFERENCE 2 (bases 1 to 781) AUTHORS Matthee,C.A. TITLE Direct Submission JOURNAL Submitted (23-MAY-1996) Zoology & Entomology, University of Pretoria, Lynnwood road, Pretoria, Gauteng 0002, South Africa STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U59171 BASE COUNT 283 a 159 c 138 g 201 t 4432 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~G-CA |AA-AC--UA -CAC-A-UGC 721 -AAGa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCAUACCUGU GAGAA---UA C|CCU-Uaau --au-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uuaau -----)---- 1261 ---------- ---------- --ug--aua- c-aAAGGAGU |--------- gGGUAUCA-- 1321 -AGCACACU- -----(auau ---------- ---------- ---------- ------)--- 1381 --AGU|---A GCUAA--AGA C|AUCUU-GC --|------- (-cca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU UAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- GC-UAU---u ua-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAUU|--- -AAC-UCA-- 1981 AGUUA-AUAG C--------a uuCGGC|GUA AAGCGUGUua --uauu---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ----ug---- -uaaaauaaa auuaaa--gu -----|UAAG CUAUAA-CUA ----AGCC(G 2341 UAAAA)AGCC AU-------A GUUA-AUAUA AAA------- ----auaaac -aAC(-GAAA 2401 -)GU|g---- ----acuuua ---uaaaucu ---------- gau---auGC ACGAC-AGCU 2461 A-GAC---CC CAAACUGAG( AUUAGAUAC) CUCA-CUAU| -GUCU-AGC- CGUAAA-CUU 2521 A--AACU-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- auu(caac)a a---A-AUAG 2701 U-U|--C|GC C-CGAG-AAC UACUAGC(-- -AAUA--)GC UCA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGCUA U-ACCUUACC ACAUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CUU(A --ACA)AAG- -----(aag- 3181 aa-)------ A-AGUAAGCA CAA-GCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uugcc- 3781 ---------A GAAAAA-CGU U-AGGUCAAG G|CGUA|GCU UAU------- ---------G 3841 A-G-GU-GG- AG-GGU--AA -UGGGCUACA UU--CUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu a----)---- ---------- ---------- CAG-AAcaaa 4021 uucau----- ------aCGC --UAUCU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-c-) U-AA-G--GG -A--CAAAG- -gcGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- uuaga-ga-- --)GCUUAAU ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.cap.4 5213 bp RNA RNA 12-SEP-1996 DEFINITION Mitochondrion Pedetes capensis.; . ACCESSION U67302 KEYWORDS . SOURCE Mitochondrion Pedetes capensis. ORGANISM Mitochondrion Pedetes capensis. REFERENCE 1 (bases 1 to 768) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE evidence from the mitochondrial 12SrRNA gene Higher level systematics of rodents (Mammalia, Rodentia): JOURNAL J. Mammal. Evol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 768) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE Direct Submission JOURNAL Submitted (20-AUG-1996) Wildlife and Fisheries, Texas A&M University, 210 Nagle Hall, College Station, TX 77843-2258, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U67302 BASE COUNT 277 a 152 c 134 g 205 t 4445 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~-~-~GC 721 -AAGa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCAUACCUGU GAGAA---UA C|CCU-Uagu --au-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-uaaac- -----)---- 1261 ---------- ---------- --ug--aua- u-aAAGGAGU |--------- gGGUAUCA-- 1321 -AGCACACu- -----(auau ---------- ---------- ---------- ------)--- 1381 --aGU|---A GCUAA--AGA C|AUCUU-GC --|------- (-cca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU UAAAAUUAAG C-CAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- GC-UAU---u ua-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCGCC-GC -GGU-UA)-U ACGAUU|--- -AAC-UCA-- 1981 AGUUA-AUAA G-------ca uuCGGC|GUA AAGCGUGUua --uauu---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------ua-- -uaagauaag auuaaa--gu -----|UAAG CUAUAA-CUA ----AGCC(G 2341 UAAAA)AGCC AU-------A GUUA-guaUA AAA------- ----auaaac -aAC(-GAAA 2401 -)GU|g---- ----acuuua ---uaagu-- ---------- cua-uauuAC ACGAC-AGCU 2461 A-GAU---CC CAAACUGAG( AUUAGAUAC) CUCA-CUAU| -GUCU-AGC- CGUAAA-CUU 2521 A--AACU-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a uuc(-aac)a a---A-AUAG 2701 U-U|--C|GC C-CGAG-AAC UACUAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGCUU U-ACCUUACC ACAUCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |A------UC CU-CA|G-CA AAC-|CUU(A --ACA)AAG- -----(aaa- 3181 aa-)------ A-AGUAAGCA CAA-GCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|CGUA|GCU UAU------- ---------G 3841 A-G-GU-GG- AA-AGU--AA -UGGGCUACA UU--UUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu u----)---- ---------- ---------- CAG-AAuaaa 4021 uuau------ ------aCGU --UAUCU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-G--AG -A--CAAAG- -g-cGAUUUA 4141 G-U--AGUAA A-UUAAGA(- uuaga-ga-- --)GCUUAAU U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (21)-Sciur 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.G.volan 5213 bp RNA RNA 16-DEC-1997 DEFINITION Mitochondrion Glaucomys volans.; . ACCESSION AF0380 0 KEYWORDS . SOURCE Mitochondrion Glaucomys volans. ORGANISM Mitochondrion Glaucomys volans. REFERENCE 1 (bases 1 to 1041) AUTHORS Douzery,E. and Catzeflis,F.M. Springer,M.S., Burk,A., Metcalf,A., Cleven,G.C., Lavergne,A., TITLE evidence for rate acceleration in proboscideans Rates of 12S rRNA nucleotide substitution in mammals with JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1041) AUTHORS Springer,M.S., Burk,A., Metcalf,A., Cleven,G.C., Lavergne, A., Douzery,E. and Catzeflis,F.M. TITLE Direct Submission JOURNAL Submitted (10-DEC-1997) Biology, University of California, 1354 Spieth, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038020 BASE COUNT 344 a 221 c 163 g 245 t 4240 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGCU 661 (UGG-)U-CC U|GGCCU-UU UUA-UUAGCU -C-GUAG-UA |AA-CU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCGCCCCAGU GAGAA---UG C|CCU-Cuau -auc-aa--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--acaa- -----)---- 1261 ---------- ---------- --uu--gau- caaaAGGAGC |--------- CGGCAUCA-- 1321 -AGCUCACuu -----(aaca ---------- ---------- ---------- ------)--- 1381 -aaGU|---A GCUca--CAA C|GCCUU-GC --|------- (-uca--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACA----C-A 1501 GCA|GUG-AU UAAAAUUAAG UuAAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-UAC---u cua------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -AAC-CCU-- 1981 AGUUA-AUAA A--------a uaCGGC|GUA AAGCGUGAuu --aagg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ----uu---a aucccuaccg aauaag--ac -----|UAAG CUUAAA-CUA ----AGCU(G 2341 UAAAA)AGCC UU-------A GUUA-UAauA AAA------- ---auaaaua -uAC(-GAAA 2401 -)GU|a---- ----gucuua ---ccac--- ---------- ccu-gaacUC ACGAU-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAC 2521 A--AAUA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ac(uaac)a a---A-AAUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AAUU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACCUUUUGCA ---------- ---------- 2881 (---a---ua cu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AUA)AGG- -----(ucu- 3181 ua-)------ U-AGUAAGCA UAA-GAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuuac- 3781 ---------A UAAAAG-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------A 3841 A-G-GU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(ccc ucc-c)---- ---------- ---------- UAG-AAcaac 4021 auuua----- ------aCGa --UAGCU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-g-) U-AC-A--AG -C--UCAAG- -GCGGAUUUA 4141 G-U--AGUAA G-CUAAGA(- auaga-gu-- --)GCUUAGC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUG--GGCA 4261 AUAAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaauucuua 4381 acuca-aua- -auauaacua auuucc-uau aucca--aag aauaa----- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAAG-AGA-U AAGUCGUAAC AAGGUAAA-C AUA-CU(GGA 4621 -A)AGU-GU- GUUUGGAACA CC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.cepap 5213 bp RNA RNA 28-MAR-1997 DEFINITION Mitochondrion Paraxerus cepapi.; . ACCESSION U59175 KEYWORDS . SOURCE Mitochondrion Paraxerus cepapi. ORGANISM Mitochondrion Paraxerus cepapi. REFERENCE 1 (bases 1 to 787) AUTHORS Matthee,C.A. and Robinson,T.J. TITLE Molecular phylogeny of the springhare, Pedetes capensis, based on mitochondrial DNA sequences JOURNAL Mol. Biol. Evol. 14 (1), 20-29 (1997) STANDARD No information REFERENCE 2 (bases 1 to 787) AUTHORS Matthee,C.A. TITLE Direct Submission JOURNAL Submitted (23-MAY-1996) Zoology & Entomology, University of Pretoria, Lynnwood road, Pretoria, Gauteng 0002, South Africa STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U59175 BASE COUNT 275 a 188 c 146 g 178 t 4426 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~G-UA |AG-CU--UA -UAC-a-uGC 721 -AAGC----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCGCCCCAGU GAGAA---UG C|CCU-Cuau --gu-ca--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--agca- -----)---- 1261 ---------- ---------- --ag--acc- c-aAAGGAGC |--------- aGGUAUCA-- 1321 -AGCUCACuc u----(cau- ---------- ---------- ---------- ------)--- 1381 agaGC|---A GCUCA--AGA C|ACCUU-GC --|------- (-ucg--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUA-AU UAGAAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUG| 1561 A|-GCUA-U- AC-UGC---a auucaa---- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCU-- 1981 AGUUA-AUGA A--------a uaCGGC|GUA AAGCGUGAuu --aagg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------uu ---acaaaca aauaag--ac -----|UAAG CUUGGA-CUA ----AGCC(G 2341 UAAAA)AGCC UU-------G GUCC-CAaua aaA------- ----auacuu -uUC(-GAAA 2401 -)GU|a---- ----gucuua ---caacc-- ---------- ccu-gaauUC ACGAU-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAA 2521 UUAGAUA-UU |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(aaac)a a---G-AAUA 2701 U-U|--C|AC C-AGAG-UAC UACUGGC(-- -AACA--)GC CUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCUUAUA-UC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC AUCUUUAGCA ---------- ---------- 2881 (-------au au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---c---aGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC CU-CA|G-CA AAC-|CCU(A --ACA)AGG- -----(cac- 3181 ca-)------ U-AGUAAGCA CAA-GAAG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cauac- 3781 ---------G UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 A-G-AU-GG- UA-AGC--AA -UGGGCUACA UU--UUGUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au ua---)---- ---------- ---------- UAG-AAcauc 4021 auccc----- ------aCGa --CAGCU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-c-) U-AA-A--AG -C--CUAAG- -GCGGAUUUA 4141 G-U--AGUAA G-UUAGGA(- auaga-ga-- --)GCCUAAU ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.nig.1 5213 bp RNA RNA 28-MAR-1997 DEFINITION Mitochondrion Sciurus niger.; . ACCESSION U59174 KEYWORDS . SOURCE Mitochondrion Sciurus niger. ORGANISM Mitochondrion Sciurus niger. REFERENCE 1 (bases 1 to 783) AUTHORS Matthee,C.A. and Robinson,T.J. TITLE based on mitochondrial DNA sequences Molecular phylogeny of the springhare, Pedetes capensis, JOURNAL Mol. Biol. Evol. 14 (1), 20-29 (1997) STANDARD No information REFERENCE 2 (bases 1 to 783) AUTHORS Matthee,C.A. TITLE Direct Submission JOURNAL Submitted (23-MAY-1996) Zoology & Entomology, University of Pretoria, Lynnwood road, Pretoria, Gauteng 0002, South Africa STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U59174 BASE COUNT 269 a 169 c 147 g 198 t 4430 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~G-UA |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- uCGCCCCAGU GAGAA---UG C|CCU-Cuau --cu-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--acaa- -----)---- 1261 ---------- ---------- --gg--auc- a-gAAGGUGC |--------- aGGUAUUA-- 1321 -AGUACGCUC -----(uuuc uu-------- ---------- ---------- ------)--- 1381 -GAGC|---A GCUCA--UGA C|ACCUU-GC --|------- (-uau--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACA----C-A 1501 GCA|GUG-AU UAAAAUUGAG A-UAUGAAC( ---------- ----GAAA)G UUUGA-CUG| 1561 A|-GUCA-U- AC-UAA---u acuua----- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCU-- 1981 AGUUA-AUAA G--------- caCGGC|GU- AAGCGUGAua --aagg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------a auaaucuaaa gauaag--au -----|UAAG CUCUAA-CUA ----AGCU(G 2341 UAAAA)AGCC UU-------A GUUA-AAAUA AAA------- ----auauaa -aAC(-GAAA 2401 -)GU|g---- ----gucuua ---uaacu-- ---------- ccu-gacuUG ACGAU-AGCU 2461 A-AGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 A--AAUA-UU |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ac(uaac)a a---G-AAUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCCCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGUUA A-ACCUCACC ACUCUUUGCA ---------- ---------- 2881 (-------au gu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --ACA)AGG- -----(cau- 3181 ca-)------ U-AGUAAGCA UAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ucuac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 A-G-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu uc---)---- ---------- ---------- UAG-AAcauc 4021 uuc------- ------aCGA --CAGCU-UA U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAa-c-) A-ug-a--ga -c--UAGAG- -GAGGAUUUA 4141 G-U--AGUAA G-UUAGGA(- auaga-ga-- --)GCUUAAU ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.nig.2 5213 bp RNA RNA 12-SEP-1996 DEFINITION Mitochondrion Sciurus niger.; . ACCESSION U67289 KEYWORDS . SOURCE Mitochondrion Sciurus niger. ORGANISM Mitochondrion Sciurus niger. REFERENCE 1 (bases 1 to 776) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE evidence from the mitochondrial 12SrRNA gene Higher level systematics of rodents (Mammalia, Rodentia): JOURNAL J. Mammal. Evol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 776) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE Direct Submission JOURNAL Submitted (20-AUG-1996) Wildlife and Fisheries, Texas A&M University, 210 Nagle Hall, College Station, TX 77843-2258, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U67289 BASE COUNT 262 a 175 c 146 g 193 t 4437 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~-~-~GC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- uCGCCCCAGU GAGAA---UG C|CCU-Cuau --cu-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--acaa- -----)---- 1261 ---------- ---------- --gg--auc- a-aaAGGUGC |--------- AGGUAUUA-- 1321 -AGUACGCuc -----(uuuc uu-------- ---------- ---------- ------)--- 1381 -gaGC|---A GCUCA--UGA C|ACCUU-GC --|------- (-uau--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACA----C-A 1501 GCA|GUG-AU UAAAAUUGAG A-UAUGAAC( ---------- ----GAAA)G UUUGA-CUG| 1561 A|-GUCA-U- AC-UAA---u acuua----- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCU-- 1981 AGUUA-AUAA A--------g caCGGC|GUA AAGCGUGAua --aagg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ----aa---- -uaaucuaaa gauaag--au -----|UAAG CUCUAA-CUA ----AGCU(G 2341 UAAAA)AGCC UU-------A GUUA-AAaua aaA------- ----auauaa -aAC(-GAAA 2401 -)GU|g---- ----gucuua ---uaacu-- ---------- ccugac-uUC ACGAU-AGCU 2461 A-AGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 A--AAUA-UU |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ac(uaac)a a---G-AAUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CCCCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGUUA A-ACCUCACC ACUCUUUGC- ---------- ---------- 2881 (---a---au gu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---c---aGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --ACA)AGG- -----(cau- 3181 ca-)------ U-AGUAAGCA UAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ucuac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------A 3841 G-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(uuu cuc-c)---- ---------- ---------- UAG-AAcacu 4021 uc-------- ------aCGa --CAGCA-GU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-a-) U-GA-C-UAG -C--CUAAG- -GCGGAUUUA 4141 G-U--AGUAA G-UUGGGA(- auaga-gu-- --)GCCCAAC U-g~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.tride 5213 bp RNA RNA 12-SEP-1996 DEFINITION Mitochondrion Spermophilus tridecemlineatus.; . ACCESSION U67290 KEYWORDS . SOURCE Mitochondrion Spermophilus tridecemlineatus. ORGANISM Mitochondrion Spermophilus tridecemlineatus. REFERENCE 1 (bases 1 to 772) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE Higher level systematics of rodents (Mammalia, Rodentia): evidence from the mitochondrial 12SrRNA gene JOURNAL J. Mammal. Evol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 772) AUTHORS Nedbal,M.A., Honeycutt,R.L. and Schlitter,D.A. TITLE Direct Submission JOURNAL Submitted (20-AUG-1996) Wildlife and Fisheries, Texas A&M University, 210 Nagle Hall, College Station, TX 77843-2258, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U67290 BASE COUNT 273 a 164 c 136 g 199 t 4441 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~-~-~GC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCGCCCCAGU GAGAA---UG C|CCU-Cuau --au-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-auaac- -----)---- 1261 ---------- ---------- --ug--auc- a-aAAGGUGC |--------- aGGCAUCA-- 1321 -AGUUCACua -----(cucc ---------- ---------- ---------- ------)--- 1381 -uaGU|---A GCUCA--UAA C|GCCUU-GC --|------- (-ucc--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACA----C-A 1501 GCA|GUA-AU UAACAUUAAG CcuAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-A- GC-UAA---a uuua------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCU-- 1981 AGUUA-AUGA A--------a uaCGGC|GUA AAGCGUGAuu --aaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------ga-- ---cuaauua gauaag--au -----|UAAA AUUAUA-CUA ----AACU(G 2341 UAAAA)AGUC UU-------G GUGU-UAAUG AAA------- ----aucaaa -uAC(-GAAA 2401 -)GU|a---- ----aucuua ---aauuu-- ---------- ucu-gaauUC ACGAU-AGCU 2461 A-AGA---CU CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CAU 2521 A--AAUA-UU |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ac(aaac)a a---G-AAUA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AAUG--)GC CUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-CC CCUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC ACCUUUAGCA ---------- ---------- 2881 (---a---au au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UG-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(ucc- 3181 ua-)------ U-AGUAAGCA AGA-AAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ucuac- 3781 ---------A UUAGUA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------A 3841 A-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu uuc-c)---- ---------- ---------- UAG-AAcaaa 4021 uauac----- -------aau --AGCUU-U- U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--u-) U-C--A--GA -Gc-AUAAG- -gcGGAUUUA 4141 G-U--AGUAA G-UUAAGA(- auaga-ga-- --)GCUUAAC U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (19)-Scand 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.T.tana 5213 bp RNA RNA 16-DEC-1997 DEFINITION Mitochondrion Tupaia tana.; . ACCESSION AF0380 1 KEYWORDS . SOURCE Mitochondrion Tupaia tana. ORGANISM Mitochondrion Tupaia tana. REFERENCE 1 (bases 1 to 944) AUTHORS Springer,M.S., Burk,A., Metcalf,A., Cleven,G.C., Lavergne,A., Douzery,E. and Catzeflis,F.M. TITLE Rates of 12S rRNA nucleotide substitution in mammals with evidence for rate acceleration in proboscideans JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 944) AUTHORS Springer,M.S., Burk,A., Metcalf,A., Cleven,G.C., Lavergne, A., Douzery,E. and Catzeflis,F.M. TITLE Direct Submission JOURNAL Submitted (10-DEC-1997) Biology, University of California, 1354 Spieth, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038021 BASE COUNT 325 a 228 c 176 g 215 t 4269 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aacAGGUU 661 (UGG-)U-CC U|GGCCU-UU CUA-UUAGUU -A-GUAG-UA |AA-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCGACCCAGU GAGAA---UG C|CCU-cuaa --gu-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---uaca -----)---- 1261 ---------- ---------- ---g--acu- -aaAAGGAGC |--------- uGACAUCA-- 1321 -AGCACACU- -----(auuc ---------- ---------- ---------- ------)--- 1381 --AGU|---A GCUCA--UAA C|GUCUU-GC --|------- (-uca--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UUA----C-A 1501 GCA|GUG-AU AAAAAUUAAG C-UAUGAAC( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-GUUA-U- AC-UAC---u aa-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGAUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAU-CCA-- 1981 AAUUA-AUAG A--------u cacGGC|GUA AAGAGUGUUU -A-ugg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -uaaccuaac aauaaa--gu -----|CAAA UAAAGC-CCG ----AGCC(G 2341 UAAAA)UGCU Ac-------c ggcc--cacu aag------- ----aacaau -aAC(-GAAA 2401 -)GU|a---- ----acuuua ---uuaca-- ---------- uca-GACUAC ACGAU-AAUU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AAU- UGUAAA-CUU 2521 A--GGUA-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ca(caac)a a---A-AUUA 2701 C-U|--C|GC C-AGAG-UAC UACGUGC(-- -CACA--)GC CCA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC AUCUCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --AAA)AGG- -----(aug- 3181 cc-)------ A-AGUAAGCC CAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---uaacc-- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 G-G-AU-GG- GA-AGU--CA -UGGGCUACA UU--UUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ua---)---- ---------- ---------- AAG-AAcauc 4021 ---------- ------ACGC --CAACC-CG U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAa-c-) U-AU-G--GG -U--GUAAG- -GAGGAUUUA 4141 G-C--AGUAA A-CCGGAA(- auaga-ga-- --)GUCCAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 AUAAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gaaugcccc 4381 ccccc-ccau ucauaauu-a uugacau--- ----gcauac aa-------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AAGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAAAA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (19)-Siren 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.D.dugon 5213 bp RNA RNA 28-JUL-1996 DEFINITION Mitochondrion Dugong dugon.; . ACCESSION U60185 KEYWORDS . SOURCE Mitochondrion Dugong dugon. ORGANISM Mitochondrion Dugong dugon. REFERENCE 1 (bases 1 to 957) AUTHORS Springer,M.S. and Douzery,E. TITLE mitochondrial 12S rRNA molecules Secondary structure and patterns of evolution among mammalian JOURNAL J. Mol. Evol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 957) AUTHORS Lavergne,A., Douzery,E., Stichler,T., Catzeflis,F. and Springer,M. TITLE Between order mammalian relationships: paenungulate monophyly is evidenced by the complete 12S rDNA gene JOURNAL Mol. Phylogenet. Evol. (1996) In press STANDARD No information REFERENCE 3 (bases 1 to 957) AUTHORS Springer,M.S. TITLE Direct Submission JOURNAL Submitted (06-JUN-1996) Mark S. Springer, University of California, Biology, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U60185 LOCUS DDU60185 957 bp DNA DEFINITION Dugong dugon 12S ribosomal RNA gene, mitochondrial gene encoding mitochondrial rRNA, complete sequence ACCESSION U60185 SOURCE dugong. ORGANISM Mitochondrion Dugong dugon Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Sirenia; Dugongidae; Dugong BASE COUNT 324 a 236 c 185 g 212 t 4256 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|GGCCU-UC UUA-UUGGUU -C-UUAG-CG |AG-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCGCCAGU GAGAA---UG C|CCU-uuaa --au-ca--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cucc- -----)---- 1261 ---------- ---------- --cg--auc- auaAAGGAGC |--------- aGGUAUCA-- 1321 -AGCACAC-- -----(-acu cau------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UAA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU AGAAAUUUAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCUA-C- GC-UAU---a ua-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-C ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAA G--------u accGGC|GUA GAGCGUGUUU -A-gga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------g aagacccaua aauaaa--gu -----|UAAA UCAGAU-CCA ----AGCC(G 2341 UAGAA)AGCU AA-------A GAUC-AGAca aaA------- ----auaauc -cAC(-GAAA 2401 -)GU|g---- ----acuuua ---ucagc-- ---------- ucu-GAACAC ACGAU-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 C--GAUA-GC |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(caac)a a---A-GCUA 2701 C-C|--C|GC C-AGAG-AAC UACUAGC(-- -AAAA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|ACGGUG- CUUCACA-UC CCCCUAGA|G GAGCCUGU-C |CCAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC CCCACUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CC AAC-|CCU(U --AAA)AGG- -----(ugc- 3181 aa-)------ A-AGUAAGCU CAA-UGAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----agcc-- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 U-G-GA-GG- uc-uaa--GA -UGGGCUACA UU--UUCUC- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- GAG-AAcaau 4021 caacca---- ------ACGG --ACGUC-AC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-AG-U--GA -C--CAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aagua-uuc 4381 auaac-cauu ccac------ ca-uaua--- -ug----auc cuaauagca- -uauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUua cu-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.manau 5213 bp RNA RNA 28-JUL-1996 DEFINITION Mitochondrion Trichechus manatus.; . ACCESSION U60183 KEYWORDS . SOURCE Mitochondrion Trichechus manatus. ORGANISM Mitochondrion Trichechus manatus. REFERENCE 1 (bases 1 to 958) AUTHORS Springer,M.S. and Douzery,E. TITLE Secondary structure and patterns of evolution among mammalian mitochondrial 12S rRNA molecules JOURNAL J. Mol. Evol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 958) AUTHORS Lavergne,A., Douzery,E., Stichler,T., Catzeflis,F. and Springer,M. TITLE Between order mammalian relationships: paenungulate monophyly is evidenced by the complete 12S rDNA gene JOURNAL Mol. Phylogenet. Evol. (1996) In press STANDARD No information REFERENCE 3 (bases 1 to 958) AUTHORS Springer,M.S. TITLE Direct Submission JOURNAL Submitted (06-JUN-1996) Mark S. Springer, University of California, Biology, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U60183 SOURCE Caribbean manatee. SOURCE Caribbean manatee. ORGANISM Mitochondrion Trichechus manatus Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Eutheria; Sirenia; Trichechidae; Trichechus. LOCUS TMU60183 958 bp DNA MAM 28-JUL-1996 DEFINITION Trichechus manatus 12S ribosomal RNA gene, mitochondrial gene encoding mitochondrial rRNA, complete sequence. ACCESSION U60183 NID g1465766 KEYWORDS . BASE COUNT 329 a 230 c 182 g 217 t 4255 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UC UUA-UUAGUU -U-UUAG-UG |AG-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCGCCAGU GAAAA---UG C|CCU-ucaa --au-ca--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uuac- -----)---- 1261 ---------- ---------- --ug--acc- auaAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACAC-- -----(-acc uau------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--CAA C|ACCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU AAAAAUUUAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCUA-C- GC-UAA---c aca------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAA G--------c aucGGC|GUA GAGCGUGUUU -A-gga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------g ucgacacaca aauaaa--gu -----|UAAA UUAAAU-CUA ----AGCC(G 2341 UAAAA)AGCU AA-------G GAUU-AGAca aaA------- ----auaacc -cAC(-GAAA 2401 -)GU|g---- ----acuuua ---ccagc-- ---------- ucu-GAAUAC ACGAU-AGCU 2461 A-GGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-CCU 2521 C--AAUG-GC |UG|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(uaac)a a---A-GCCA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AAAG--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-UC CCCCUAGA|G GAGCCUGU-C |CCAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC ACCACUAGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CC AAC-|CCU(U --AGA)AGG- -----(ucc- 3181 aa-)------ A-AGUGAGCU CGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aacc-- 3781 ---------A UAAAAA-AGU U-AGGUCAAG G|UGUA|GCC CAU------- ---------G 3841 U-G-GU-GG- uc-caa--GA -UGGGCUACA UU--UUCUC- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ca---)---- ---------- ---------- GAG-AAcaau 4021 caaacua--- ------ACGG --ACGUU-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) A-AA-U--GA -C--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- ucaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaua---- 4381 --ccc-auaa uuauc----- uuaccacaaa caa---uuuu aauaag---- -uauga---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUca cu-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (18)-Metat 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (19)-Dasyu 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .--------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ----|..... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......-.. .......... .......... ..-....... |......... ....-..... 1081 .......-.. .....|.... ........-- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ------.... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 ......|... .......... .........| ........-. .......... ...-...... 1381 .......... ..---..... -..---.... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .....-.... ........-- --........ ....--.... 1681 .--....... .......... .......... .......... .......... .......... 1741 ....---... .......... .....-.... .......... .......... .......... 1801 .......... ......---. ..-....... .......... .......... ........-. 1861 ...|...-.. .......... .......... .......... .......... .....-...| 1921 .......... .......... .......... .......... .--....... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......-.. .......... -.......-. .......... .......... 2341 .......... ..--...... .......... .......-.. .......... .......... 2401 .......... .......... ......---- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 --------.. .......... .......... .......... .......... .......... 2581 .......... .......... ........|. .......-.. .......... -......... 2641 ......--.. .-........ .......... ---....... .....-.... .......... 2701 ...-...... .......... .......... .........| .......... .......... 2761 .......... .......... .......... .......... ...-...... ...--..... 2821 ........-. .......... .......... .......... .........- -....-..|. 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .--....... .-..-..... 3061 .......... .---..--.. .......... .......... .......... .-........ 3121 |......... .......... .....|.... ......-.|. .......... ........-- 3181 ---------- -.......-- .......... .......... .......... .......... 3241 ...---.... -......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .........- -......... .-.....-.. 3481 .....--.|. .......... -.....-... .......... --........ .........- 3541 .......... .-........ .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....--... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... ......---- .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......... .......... .......... ..-....... .......... 4141 .......... .......... -......... ..|..-.... ---------- ----...... 4201 -..-.....- .......... .......-.. .......... .-.....--. .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......-.. .......... .......... .......... .......... 4381 ---....... .....-.... .....-.... .......... .......... .......... 4441 .......... .......... --........ .......... ....-..... ......-..- 4501 -......... .......... .......... ........-. .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .-........ ...-...... .......... 4681 .......... ......-... .........- .......... -......... .........- 4741 .....-.... .......... ........-- ....-..... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... ...--..... ........-- .......... .......... 4921 .......... .......... ........-. .......... ........-. ...-...... 4981 -.....-... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (20)-Dasyu 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.A.lanig 5213 bp RNA RNA 02-AUG-1997 DEFINITION Mitochondrion Antechinomys laniger.; . ACCESSION AF0019 6 KEYWORDS . SOURCE Mitochondrion Antechinomys laniger. ORGANISM Mitochondrion Antechinomys laniger. REFERENCE 1 (bases 1 to 956) AUTHORS Krajewski,C., Blacket,M., Buckley,L. and Westerman,M. TITLE A multigene assessment of phylogenetic relationships within the Dasyurid marsupial subfamily Sminthopsinae JOURNAL Mol. Phylogenet. Evol. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 956) AUTHORS Blacket,M.J. and Westerman,M. TITLE Direct Submission JOURNAL Submitted (02-MAY-1997) Genetics and Human Variation, LaTrobe University, Bundoora, Melbourne, Victoria 3083, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF001936 BASE COUNT 325 a 227 c 193 g 211 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAAUCCGGU GAGUA---CG C|CCU-Ugaa --ac-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----ga cccc-)---- 1261 ---------- ---------- --ga--guu- u-uAGGGAGC |--------- aGGCAUCA-- 1321 -GGCACACU- -----(-cuc gu-------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UGA C|ACCUC-GU --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UAAa-ua a-----cc-- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------g aauuaacaga 1861 ------agaa cggc|guaaa guguguuua- agc---aaaa uguccac--- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AA--CCA-- 1981 AA~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|- ---------- 2281 ---------- ---------- --uaag--gu -----|UAAA aaUCAA-CUg ----uGCU(G 2341 UAAUA)CGCc au-------A GUUG-ACAUU AAA------- ----auacgc -aAC(-UAAC 2401 -)GU|g---- ----acuuua cccc------ cu-------- gcu-gaagAC ACUAA-AGCU 2461 A-AGG---UC CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CCG 2521 A--GGUA-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- caa(uaac)g a---A-AUUA 2701 C-U|--C|GC C-AGAG-AAC UACGAGC(-- -CACC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC CCUUCUCGCC ---------- ---------- 2881 (-------ua -a-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --AUA)GGG- -----(ucc- 3181 aa-)------ A-AGUGAGCA AAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-GG-GG- GA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c cc---)---- ---------- ---------- UAG-AAcaua 4021 ---------- ------ACGG --AGUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-AA-G--AU -A--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUC--GGCA 4261 AUAGGG-UG- UGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aacaaagua 4381 aucac-ccca uaccuaau-a aaaguacgua agaa-a---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGGAAUA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.bellu 5213 bp RNA RNA 02-MAY-1998 DEFINITION Mitochondrion Antechinus bellus.; . ACCESSION AF0383 8 KEYWORDS . SOURCE Mitochondrion Antechinus bellus. ORGANISM Mitochondrion Antechinus bellus. REFERENCE 1 (bases 1 to 955) AUTHORS Armstrong,L.A., Krajewski,C. and Westerman,M. TITLE cytochrome b, 12S rRNA, and protamine P1 genes Phylogeny of the dasyurid marsupial genus Antechinus based on JOURNAL J. Mammal. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 955) AUTHORS Westerman,M. and Krajewski,C. TITLE Direct Submission JOURNAL Submitted (12-DEC-1997) Zoology, Southern Illinois University, Carbondale, IL 62901-6501, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038308 BASE COUNT 328 a 202 c 190 g 235 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGACCCAGU GAGUA---UG C|CCU-Uuua --ac-u---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----uuu uca--)---- 1261 ---------- ---------- --ga--guc- u-aAAGGAGC |--------- aGGUAUCA-- 1321 -GGCACACUu -----(-cuc ca-------- ---------- ---------- ------)--- 1381 -aAGU|---A GCCCA--UAA C|ACCUA-GU --|------- (-uug--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UUA----C-A 1501 GCA|GUG-AC UAACAUUGAA C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UAAaaa- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUUA-ACAG A-------AG AACGGC|GUA AAGUGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------auu uaaauuuuua aauaaa--gu -----|UAAA GAGCAA-UUU ----AGCU(G 2341 UAAUA)CGCC AA-------A GUUG-UCAUU AAA------- ----auacgc -aAC(-UUAC 2401 -)GU|g---- ----acuuua ccaa------ -u-------u gcu-gaagAC ACUAA-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CCG 2521 A--GGUA-GU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a---G-ACUA 2701 U-U|--C|GC C-AGAG-AAC UACAAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC UUUCCUAGCU ---------- ---------- 2881 (--------g u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --ACA)GGG- -----(aac- 3181 ca-)------ A-AGUGAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 G-A-AA-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AAcaua 4021 ---------- ------ACGG --AUUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) A-AA-G--AC -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUGGGG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gauaaagu- 4381 aauuu-uccu auacc-uaau aaggauacgc aaaa-aa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AAGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAUAA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.flavi 5213 bp RNA RNA 02-MAY-1998 DEFINITION Mitochondrion Antechinus flavipes.; . ACCESSION AF0383 6 KEYWORDS . SOURCE Mitochondrion Antechinus flavipes. ORGANISM Mitochondrion Antechinus flavipes. REFERENCE 1 (bases 1 to 953) AUTHORS Armstrong,L.A., Krajewski,C. and Westerman,M. TITLE Phylogeny of the dasyurid marsupial genus Antechinus based on cytochrome b, 12S rRNA, and protamine P1 genes JOURNAL J. Mammal. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 953) AUTHORS Westerman,M. and Krajewski,C. TITLE Direct Submission JOURNAL Submitted (12-DEC-1997) Zoology, Southern Illinois University, Carbondale, IL 62901-6501, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038306 BASE COUNT 324 a 205 c 192 g 232 t 4260 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGACCCAGU GAGUA---UG C|CCU-Uuua --ac-u---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----uuu uca--)---- 1261 ---------- ---------- --ga--guc- u-aAAGGAGC |--------- aGGUAUCA-- 1321 -GGCACACUu -----(-uuc ca-------- ---------- ---------- ------)--- 1381 -aAGU|---A GCCCA--UAA C|ACCUA-GU --|------- (-uug--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UAAaaa- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AGUUA-ACAG A-------AG AACGGC|GUA AAGUGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------guu uaaaaucuua aauaaa--gu -----|UAAA GAGCAA-UUU ----AGCU(G 2341 UAAUA)CGCC AA-------G GUUG-ACAUU AAA------- ----auacgc -aAC(-UUAC 2401 -)GU|g---- ----acuuua ccua------ -u-------u gcu-gaagAC ACUAA-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CCG 2521 A--GGUA-GU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a---G-ACUA 2701 U-U|--C|GC C-AGAG-AAC UACAAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC UUUCCUAGC- ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --ACA)GGG- -----(aac- 3181 ca-)------ A-AGUGAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 G-A-AA-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AAcaua 4021 ---------- ------ACGG --AUUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-AA-G--AC -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUGGGG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gauaaagu- 4381 aauuu--ccu auacc-uaau aagaauacgc caaa-aa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 --)AGU-GC- ACUUGGAUAA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.godma 5213 bp RNA RNA 02-MAY-1998 DEFINITION Mitochondrion Antechinus godmani.; . ACCESSION AF0383 9 KEYWORDS . SOURCE Mitochondrion Antechinus godmani. ORGANISM Mitochondrion Antechinus godmani. REFERENCE 1 (bases 1 to 954) AUTHORS Armstrong,L.A., Krajewski,C. and Westerman,M. TITLE Phylogeny of the dasyurid marsupial genus Antechinus based on cytochrome b, 12S rRNA, and protamine P1 genes JOURNAL J. Mammal. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 954) AUTHORS Westerman,M. and Krajewski,C. TITLE Direct Submission JOURNAL Submitted (12-DEC-1997) Zoology, Southern Illinois University, Carbondale, IL 62901-6501, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038309 BASE COUNT 321 a 214 c 193 g 226 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGACCCAGU GAGUA---UG C|CCU-Uuua --ac-u---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----uua uua--)---- 1261 ---------- ---------- --ga--guc- u-uAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACACUu -----(-cuc ca-------- ---------- ---------- ------)--- 1381 -aAGU|---A GCCCA--UGA C|ACCUA-GU --|------- (-uug--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AG-UAAaaa- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AGUUA-ACAG A-------AG AACGGC|GUA AAGUGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------auu caaccucaca aauaaa--gu -----|UAAA GGACAA-CUA ----AGCU(G 2341 UAAUA)CGCC CA-------A GUUG-UUAUU AAA------- ----auacgc -aAC(-UUAC 2401 -)GU|g---- ----acuuua ccug------ -c-------u gcu-gaagAC ACUAA-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CCG 2521 A--GGUA-GU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a---G-ACUA 2701 U-U|--C|GC C-AGAG-AAC UACAAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC UCUCCUAGC- ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --ACA)GGG- -----(uac- 3181 ca-)------ A-AGUGAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 G-A-AA-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c au---)---- ---------- ---------- UAG-AAcaua 4021 ---------- ------ACGG --AUUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-AA-G--AC -A--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUGGGG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gauaaagu- 4381 aauau--cuc auacc-uaau aagaauacgc aaaa-aa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC ACGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGCUAA CC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.habbe 5213 bp RNA RNA 02-MAY-1998 DEFINITION Mitochondrion Antechinus habbema.; . ACCESSION AF0383 3 KEYWORDS . SOURCE Mitochondrion Antechinus habbema. ORGANISM Mitochondrion Antechinus habbema. REFERENCE 1 (bases 1 to 957) AUTHORS Armstrong,L.A., Krajewski,C. and Westerman,M. TITLE cytochrome b, 12S rRNA, and protamine P1 genes Phylogeny of the dasyurid marsupial genus Antechinus based on JOURNAL J. Mammal. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 957) AUTHORS Westerman,M. and Krajewski,C. TITLE Direct Submission JOURNAL Submitted (12-DEC-1997) Zoology, Southern Illinois University, Carbondale, IL 62901-6501, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038313 BASE COUNT 328 a 198 c 193 g 238 t 4256 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGACCCAGU GAGUA---UG C|CCU-Uuua --ac-u---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---uucu uuuu-)---- 1261 ---------- ---------- --ga--gug- u-aAGGGAGC |--------- aGGUAUUA-- 1321 -GGCACACUu -----(-cuu ua-------- ---------- ---------- ------)--- 1381 -gAGU|---A GCCCA--UAA C|ACCUA-GU --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAA----C-A 1501 GCG|GUA-AC UAACAUUGAG C-UAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UAAaaa- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AGUUA-ACAG A-------AG AACGGC|GUA AAGUGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------auu uaaaauccaa aauaaa--gu -----|UAAA GAUCAA-UUU ----AGCU(G 2341 UAAUA)CGCU AA-------G GUUG-AUAUU AAA------- ----auacgc -aAC(-UUAC 2401 -)GU|g---- ----acuuua ccua------ -u-------u gcu-gaagAC ACUAA-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CCG 2521 A--GGUA-GU |UG|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a---A-ACUA 2701 U-U|--C|GC C-AGAG-AAC UACAAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUCACC UUUCCUAGCC ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --ACA)GGG- -----(ugc- 3181 cg-)------ A-AGUGAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 G-A-AA-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AAcauu 4021 ---------- ------ACGG --AUUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-AA-G--AC -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGGG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gauaaagu- 4381 aacaa--acc auacc-uaau aaaaauacgu aaaa-aa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAUAA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.leo 5213 bp RNA RNA 02-MAY-1998 DEFINITION Mitochondrion Antechinus leo.; . ACCESSION AF0383 0 KEYWORDS . SOURCE Mitochondrion Antechinus leo. ORGANISM Mitochondrion Antechinus leo. REFERENCE 1 (bases 1 to 952) AUTHORS Armstrong,L.A., Krajewski,C. and Westerman,M. TITLE Phylogeny of the dasyurid marsupial genus Antechinus based on cytochrome b, 12S rRNA, and protamine P1 genes JOURNAL J. Mammal. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 952) AUTHORS Westerman,M. and Krajewski,C. TITLE Direct Submission JOURNAL Submitted (12-DEC-1997) Zoology, Southern Illinois University, Carbondale, IL 62901-6501, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038310 BASE COUNT 324 a 204 c 193 g 231 t 4261 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGACCCAGU GAGUA---UG C|CCU-Uuua --ac-u---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----uuu uca--)---- 1261 ---------- ---------- --ga--guc- u-aAAGGAGC |--------- aGGUAUCA-- 1321 -GGCACACUu -----(-cuc ca-------- ---------- ---------- ------)--- 1381 -aAGU|---A GCCCA--UAA C|ACCUA-GU --|------- (-uug--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UAAaaa- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AGUUA-ACAG A-------AG AACGGC|GUA AAGGGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------auu -uaaacuuca aauaaa--gu -----|UAAA GAGCAA-CUA ----AGCU(G 2341 UAAUA)CGCC AA-------A GUUG-UCAUU AAA------- ----auacgc -aAC(-UUAC 2401 -)GU|g---- ----acuuua ccug------ -u-------u gcu-gaagAC ACUAA-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CCG 2521 A--GGUA-GU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(caac)a a---G-ACUA 2701 U-U|--C|GC C-AGAG-AAC UACAAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUCACC UUUCCUAGCU ---------- ---------- 2881 (--------g u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --ACA)GGG- -----(-ac- 3181 ca-)------ A-AGUGAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 G-A-AA-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ac---)---- ---------- ---------- UAG-AAcaua 4021 ---------- ------ACGG --AUUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-AA-G--AC -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUGGGG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gauaaagu- 4381 aguuu--ucu auacc-uaau aaaaauacgu aaaa-aa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAUAA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.melan 5213 bp RNA RNA 02-MAY-1998 DEFINITION Mitochondrion Antechinus melanurus.; . ACCESSION AF0383 2 KEYWORDS . SOURCE Mitochondrion Antechinus melanurus. ORGANISM Mitochondrion Antechinus melanurus. REFERENCE 1 (bases 1 to 957) AUTHORS Armstrong,L.A., Krajewski,C. and Westerman,M. TITLE Phylogeny of the dasyurid marsupial genus Antechinus based on cytochrome b, 12S rRNA, and protamine P1 genes JOURNAL J. Mammal. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 957) AUTHORS Westerman,M. and Krajewski,C. TITLE Direct Submission JOURNAL Submitted (12-DEC-1997) Zoology, Southern Illinois University, Carbondale, IL 62901-6501, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038312 BASE COUNT 325 a 208 c 193 g 231 t 4256 others ORIGIN 1 |.-------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUG-UUAACU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GAGUA---UG C|CCU-Uuua --ac-u---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---uucu uuuu-)---- 1261 ---------- ---------- --ga--guc- u-aAAGGAGC |--------- aGGUAUCA-- 1321 -GGCACACUu -----(-cuu ua-------- ---------- ---------- ------)--- 1381 -gAGU|---A GCCCA--UGA C|GCCUA-GU --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UAAaaa- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AGUUA-AUAG A-------AG AACGGC|GUA AAGUGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------auu uagacuccaa aauaaa--gu -----|UAAA AACCAA-UCG ----AGCU(G 2341 UAAUA)CGCC AA-------G GUUG-AUAUU AAA------- ----auacac -aAC(-UUAC 2401 -)GU|g---- ----auuuua cucg------ -u-------c gcu-gaagAC ACUAA-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CCG 2521 A--GGUA-GU |UG|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a---A-ACUA 2701 C-C|--C|GC C-AGAG-AAC UACAAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUCACC UUUUCUAGCC ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --AUA)GGG- -----(ugc- 3181 ca-)------ A-AGUGAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA CAU------- ---------G 3841 G-A-AA-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AAcauu 4021 ---------- ------ACGG --AUUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-AA-G--AC -A--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGGG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gauaaagu- 4381 aguac--ccu auacc-uaau aagaauacgc aaaa-aa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAUAA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.minim 5213 bp RNA RNA 02-MAY-1998 DEFINITION Mitochondrion Antechinus minimus.; . ACCESSION AF0383 7 KEYWORDS . SOURCE Mitochondrion Antechinus minimus. ORGANISM Mitochondrion Antechinus minimus. REFERENCE 1 (bases 1 to 952) AUTHORS Armstrong,L.A., Krajewski,C. and Westerman,M. TITLE cytochrome b, 12S rRNA, and protamine P1 genes Phylogeny of the dasyurid marsupial genus Antechinus based on JOURNAL J. Mammal. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 952) AUTHORS Westerman,M. and Krajewski,C. TITLE Direct Submission JOURNAL Submitted (12-DEC-1997) Zoology, Southern Illinois University, Carbondale, IL 62901-6501, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038307 BASE COUNT 327 a 206 c 191 g 228 t 4261 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cagAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGACCCAGU GAGUA---UG C|CCU-Uuua --ac-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----uua uua--)---- 1261 ---------- ---------- --ga--gac- u-aAAGGAGC |--------- aGGUAUCA-- 1321 -GGCACACUu -----(-c-c u--------- ---------- ---------- ------)--- 1381 -aAGU|---A GCCCA--UGA C|ACCUA-GU --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UAAaaa- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AGUUA-ACAG A-------AG AACGGC|GUA AAGUGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------guu caauaauaua aauaga--gu -----|UAAA AAUCAA-UUU ----AGCU(G 2341 UAAUA)CGCC CA-------A GUUG-AUAUU AAA------- ----auacgc -aAC(-UUAC 2401 -)GU|g---- ----acuuua ccua------ -c-------c gcu-gaagAC ACUAA-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CCG 2521 A--GGUA-GU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a---G-ACUA 2701 U-U|--C|GC C-AGAG-AAC UACAAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC UCUCCUAGC- ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --ACA)GGG- -----(aac- 3181 ca-)------ A-AGUGAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 G-A-AA-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AAcaua 4021 ---------- ------ACGG --AUUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-AA-G--AC -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUGGGG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gauaaagu- 4381 aacuu--ccu auacc-uaau aagaauacgc aaaa-aa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAUAA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.naso 5213 bp RNA RNA 02-MAY-1998 DEFINITION Mitochondrion Antechinus naso.; . ACCESSION AF0383 4 KEYWORDS . SOURCE Mitochondrion Antechinus naso. ORGANISM Mitochondrion Antechinus naso. REFERENCE 1 (bases 1 to 956) AUTHORS Armstrong,L.A., Krajewski,C. and Westerman,M. TITLE Phylogeny of the dasyurid marsupial genus Antechinus based on cytochrome b, 12S rRNA, and protamine P1 genes JOURNAL J. Mammal. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 956) AUTHORS Westerman,M. and Krajewski,C. TITLE Direct Submission JOURNAL Submitted (12-DEC-1997) Zoology, Southern Illinois University, Carbondale, IL 62901-6501, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038314 BASE COUNT 321 a 202 c 203 g 230 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -C-UUAU-CA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGAUCCAGU GAGUA---UG C|CCU-Uuug --ac-u---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---uacu cuu--)---- 1261 ---------- ---------- --ga--guu- u-aAAGGAGC |--------- aGGUAUCA-- 1321 -GGCACACUu -----(-cuu ug-------- ---------- ---------- ------)--- 1381 -aAGU|---A GCCCA--UGA C|ACCUA-GU --|------- (-uga--)-- -------AC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG UUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- GG-UAAaaa- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUUA-ACAG A-------AA AACGGC|GUA AAGUGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------auu uaaguggcaa aauaaa--gu -----|UAAA AGUCAA-CUG ----AGCU(G 2341 UAAUA)CGCC AA-------G GUUG-AUAUU AAA------- ----auacgc -aAC(-UUAC 2401 -)GU|g---- ----gcuuua ccca------ -c-------u gcu-gaagAC ACUAA-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CCA 2521 A--GGUA-GU |UG|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a---A-ACUA 2701 U-C|--C|GC C-AGAG-AAC UACAAGC(-- -UACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUCACC UUUUCUAGCC ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --ACA)GGG- -----(ugu- 3181 ua-)------ A-AGUGAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 G-A-AA-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AAcacu 4021 ---------- ------ACGG --AUUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-AA-G--AC -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUGAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUGGGG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gauaagau- 4381 agaac--ccu auaaa-uaau aagaauacgc aaaa-aa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)GGU-GC- ACUUGGAUAA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.Ante.sp 5213 bp RNA RNA 02-MAY-1998 DEFINITION Mitochondrion Antechinus sp.; . ACCESSION AF0383 1 KEYWORDS . SOURCE Mitochondrion Antechinus sp. ORGANISM Mitochondrion Antechinus sp. REFERENCE 1 (bases 1 to 951) AUTHORS Armstrong,L.A., Krajewski,C. and Westerman,M. TITLE Phylogeny of the dasyurid marsupial genus Antechinus based on cytochrome b, 12S rRNA, and protamine P1 genes JOURNAL J. Mammal. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 951) AUTHORS Westerman,M. and Krajewski,C. TITLE Direct Submission JOURNAL Submitted (12-DEC-1997) Zoology, Southern Illinois University, Carbondale, IL 62901-6501, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038311 BASE COUNT 326 a 203 c 196 g 226 t 4262 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGACCCAGU GAGUA---UG C|CCU-Uuua --ac-u---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----uaa uua--)---- 1261 ---------- ---------- --ga--guc- g-aAAGGAGC |--------- aGGUAUCA-- 1321 -GGCACACU- -----(-cuu ca-------- ---------- ---------- ------)--- 1381 -aAGU|---A GCCCA--UGA C|ACCUA-GU --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UAAaaa- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AGUUA-ACAG A-------AG AACGGC|GUA AAGUGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------auu -uauauuucg aauaga--gu -----|UAAA GAGCAA-CUA ----AGCU(G 2341 UAAUA)CGCC CA-------A GUUG-UCAUU AAA------- ----auacgc -aAC(-UUAC 2401 -)GU|g---- ----acuuua ccaa------ -u-------u gcu-gaagAC ACUAA-AGCU 2461 A-AGG---UA CAAAUCGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CCG 2521 A--GGUA-GU |UG|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a---G-ACUA 2701 U-U|--C|GC C-AGAG-AAC UACAAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC UUUCCUAGCU ---------- ---------- 2881 (--------a u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --ACA)GGG- -----(ua-- 3181 ca-)------ A-AGUGAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 G-A-AA-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u gu---)---- ---------- ---------- UAG-AAcaua 4021 ---------- ------ACGG --AUUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-AA-G--AC -A--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUGGGG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gauaaagu- 4381 aauaa--ccu auacc-uaau aaggauacgc aaaa-aa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAUAA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.stu.1 5213 bp RNA RNA 23-DEC-1997 DEFINITION Mitochondrion Antechinus stuartii.; . ACCESSION U87399 KEYWORDS . SOURCE Mitochondrion Antechinus stuartii. ORGANISM Mitochondrion Antechinus stuartii. REFERENCE 1 (bases 1 to 953) AUTHORS Krajewski,C., Buckley,L. and Westerman,M. TITLE DNA phylogeny of the marsupial wolf resolved JOURNAL Proc. R. Soc. Lond., B, Biol. Sci. 264 (1383), 911-917 (1997) STANDARD No information REFERENCE 2 (bases 1 to 953) AUTHORS Armstrong,L.A., Krajewski,C. and Westerman,M. TITLE Phylogeny of the dasyurid marsupial genus Antechinus based on cytochrome b, 12S rRNA, and protamine P1 genes JOURNAL J. Mammal. (1998) In press STANDARD No information REFERENCE 3 (bases 1 to 953) AUTHORS Westerman.M. and Krajewski,C. TITLE Direct Submission JOURNAL Submitted (28-JAN-1997) Genetics, LaTrobe University, Bundoora, Melbourne, Victoria 3083, Australia STANDARD No information REFERENCE 4 (bases 1 to 953) AUTHORS Westerman.M. and Krajewski,C. TITLE Direct Submission JOURNAL Submitted (22-DEC-1997) Genetics, LaTrobe University, Bundoora, Melbourne, Victoria 3083, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U87399 BASE COUNT 321 a 206 c 195 g 231 t 4260 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGACCCAGU GAGUA---UG C|CCU-UUUA --ac-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------a uua--)---- 1261 ---------- ---------- --ga--guc- g-aAAGGAGC |--------- aGGUAUCA-- 1321 -GGCACACUu -----(-cuc ca-------- ---------- ---------- ------)--- 1381 -aAGU|---A GCCCA--UGA C|ACCUA-GU --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UAAaaa- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AGUUA-ACAG A-------AG AACGGC|GUA AAGUGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------auu -uacacuuug aauaaa--gu -----|UAAA GAACAA-CUA ----AGCU(G 2341 UAAUA)CGCC CA-------A GUUG-UCAUU AAA------- ----auacgc -aAC(-UUAC 2401 -)GU|g---- ----acuuua ccug------ -u-------u gcu-gaagAC ACUAA-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CCG 2521 A--GGUA-GU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a---G-ACUA 2701 U-U|--C|GC C-AGAG-AAC UACAAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC UUUCCUAGCU ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --ACA)GGG- -----(uac- 3181 ca-)------ A-AGUGAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAG-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 G-A-AA-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u gu---)---- ---------- ---------- UAG-AAcauu 4021 ---------- ------ACGG --AUUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) A-AA-G--AC -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAGGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUGGGG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gauaaagu- 4381 aauuu-ccca uaccuaauaa gaa--uacgc aaaa-aa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAUAA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.stu.2 5213 bp RNA RNA 02-MAY-1998 DEFINITION Mitochondrion Antechinus stuartii.; . ACCESSION AF0383 5 KEYWORDS . SOURCE Mitochondrion Antechinus stuartii. ORGANISM Mitochondrion Antechinus stuartii. REFERENCE 1 (bases 1 to 951) AUTHORS Armstrong,L.A., Krajewski,C. and Westerman,M. TITLE cytochrome b, 12S rRNA, and protamine P1 genes Phylogeny of the dasyurid marsupial genus Antechinus based on JOURNAL J. Mammal. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 951) AUTHORS Westerman,M. and Krajewski,C. TITLE Direct Submission JOURNAL Submitted (12-DEC-1997) Zoology, Southern Illinois University, Carbondale, IL 62901-6501, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038305 BASE COUNT 325 a 204 c 190 g 232 t 4262 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGACCCAGU GAGUA---UG C|CCU-Uuua --ac-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------a uua--)---- 1261 ---------- ---------- --ga--guc- u-aAAGGAGC |--------- aGGUAUCA-- 1321 -GGCACACUu -----(-c-c ca-------- ---------- ---------- ------)--- 1381 -aAGU|---A GCCCA--UGA C|ACCUA-GU --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UAAaaa- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AGUUA-ACAG A-------AG AACGGC|GUA AAGUGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------auu -uacacuuug aauaaa--gu -----|UAAA GAACAA-CUA ----AGCU(G 2341 UAAUA)CGCC CA-------A GUUG-UCAUU AAA------- ----auacgc -aAC(-UUAC 2401 -)GU|g---- ----acuuua ccug------ -u-------u gcu-gaagAC ACUAA-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CCU 2521 A--GGUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a---A-ACUA 2701 U-U|--C|GC C-AGAG-AAC UACAAGC(-- -UACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC UUUCCUAGCU ---------- ---------- 2881 (--------a u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --ACA)GGG- -----(uac- 3181 aa-)------ A-UGUGAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 G-A-AA-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AAcauu 4021 ---------- ------ACGG --AUUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-AA-G--AC -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAGGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUGGGG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gauaaagu- 4381 aauuu--ccc auacc-uaau aagaauacgc aaaa-aa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAUAA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.swa.1 5213 bp RNA RNA 23-DEC-1997 DEFINITION Mitochondrion Antechinus swainsonii.; . ACCESSION U87398 KEYWORDS . SOURCE Mitochondrion Antechinus swainsonii. ORGANISM Mitochondrion Antechinus swainsonii. REFERENCE 1 (bases 1 to 953) AUTHORS Krajewski,C., Buckley,L. and Westerman,M. TITLE DNA phylogeny of the marsupial wolf resolved JOURNAL Proc. R. Soc. Lond., B, Biol. Sci. 264 (1383), 911-917 (1997) STANDARD No information REFERENCE 2 (bases 1 to 953) AUTHORS Armstrong,L.A., Krajewski,C. and Westerman,M. TITLE Phylogeny of the dasyurid marsupial genus Antechinus based on cytochrome b, 12S rRNA, and protamine P1 genes JOURNAL J. Mammal. (1998) In press STANDARD No information REFERENCE 3 (bases 1 to 953) AUTHORS Westerman.M. and Krajewski,C. TITLE Direct Submission JOURNAL Submitted (28-JAN-1997) Genetics, LaTrobe University, Bundoora, Melbourne, Victoria 3083, Australia STANDARD No information REFERENCE 4 (bases 1 to 953) AUTHORS Westerman.M. and Krajewski,C. TITLE Direct Submission JOURNAL Submitted (22-DEC-1997) Genetics, LaTrobe University, Bundoora, Melbourne, Victoria 3083, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U87398 BASE COUNT 323 a 209 c 193 g 228 t 4260 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGACCCAGU GAGUA---UG C|CCU-UUUA --ac-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----ua uca--)---- 1261 ---------- ---------- --ga--gcc- g-aAAGGAGC |--------- aGGUAUCA-- 1321 -GGCACACUu -----(-ccc a--------- ---------- ---------- ------)--- 1381 -aAGU|---A GCCCA--UGA C|ACCUA-GU --|------- (-uug--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UAAaaa- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AGUUA-ACAG A-------AG AACGGC|GUA AAGUGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------guuc -aauauauua aauaaa--gu -----|UAAA AAUCAA-UUC ----AGCU(G 2341 UAAUA)CGCC CA-------A GUUG-AUAUU AAA------- ----auacgc -aAC(-UUAC 2401 -)GU|g---- ----acuuua ccua------ -c-------c gcu-gaagAC ACUAA-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CCG 2521 A--GGUA-GU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a---G-ACUA 2701 U-U|--C|GC C-AGAG-AAC UACGAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC UCUCCUAGCU ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --ACA)GGG- -----(uac- 3181 ca-)------ A-AGUGAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 G-A-AA-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AAcauu 4021 ---------- ------ACGG --AUUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-AA-G--AC -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAGGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUGGGG-UG- CGUACACA-C -CGCC-GUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gauaaagu- 4381 aacuu-ccua uaccuaauaa gaa--uacgc aaaa-aa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAUAA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.swa.2 5213 bp RNA RNA 02-MAY-1998 DEFINITION Mitochondrion Antechinus swainsonii.; . ACCESSION AF0383 4 KEYWORDS . SOURCE Mitochondrion Antechinus swainsonii. ORGANISM Mitochondrion Antechinus swainsonii. REFERENCE 1 (bases 1 to 950) AUTHORS Armstrong,L.A., Krajewski,C. and Westerman,M. TITLE Phylogeny of the dasyurid marsupial genus Antechinus based on cytochrome b, 12S rRNA, and protamine P1 genes JOURNAL J. Mammal. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 950) AUTHORS Westerman,M. and Krajewski,C. TITLE Direct Submission JOURNAL Submitted (12-DEC-1997) Zoology, Southern Illinois University, Carbondale, IL 62901-6501, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038304 BASE COUNT 325 a 207 c 192 g 226 t 4263 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGACCCAGU GAGUA---UG C|CCU-Uuua --ac-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----uu u-a--)---- 1261 ---------- ---------- --ga--gcc- u-aAAGGAGC |--------- aGGUAUCA-- 1321 -GGCACACUu -----(-c-c ca-------- ---------- ---------- ------)--- 1381 -aAGU|---A GCCCA--UGA C|ACCUA-GU --|------- (-uug--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UAAaaa- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AGUUA-ACAG A-------AG AACGGC|GUA AAGUGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------guuc -aauauau-a aauaaa--gu -----|UAAA AAUCAA-UUA ----AGCU(G 2341 UAAUA)CGCC CA-------A GUUG-AUAUU AAA------- ----auacgc -aAC(-UUAC 2401 -)GU|g---- ----acuuua ccca------ -c-------c gcu-gaagAC ACUAA-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CCG 2521 A--GGUA-GU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a---G-ACUA 2701 U-U|--C|GC C-AGAG-AAC UACGAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC UCUCCUAGCU ---------- ---------- 2881 (--------a u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --ACA)GGG- -----(acc- 3181 aa-)------ A-AGUGAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 G-A-AA-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AAcaua 4021 ---------- ------ACGG --AUUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-AA-G--AC -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAGGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUGGGG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gauaaagu- 4381 aacuu--ccu auacc-uaau aagaauacgc aaaa-aa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAUAA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.D.crist 5213 bp RNA RNA 02-AUG-1997 DEFINITION Mitochondrion Dasycercus cristicauda.; . ACCESSION AF0098 9 KEYWORDS . SOURCE Mitochondrion Dasycercus cristicauda. ORGANISM Mitochondrion Dasycercus cristicauda. REFERENCE 1 (bases 1 to 953) AUTHORS Krajewski,C., Young,J., Buckley,L., Woolley,P.A. and Westerman ,M. TITLE Marsupials with Cytochrome b, 12S rRNA, and Protamine P1 Gene Trees Reconstructing the Taxonomic Radiation of Dasyurine JOURNAL J. Mammal. Evol. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 953) AUTHORS Young,J., Westerman,M. and Krajewski,C. TITLE Direct Submission JOURNAL Submitted (24-JUN-1997) Genetics and Human Variation, La Trobe University, Bundoora, Melbourne, Victoria 3083, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF009889 BASE COUNT 336 a 215 c 181 g 221 t 4260 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCAGU GAGUA---UG C|CCU-Uuua --ac-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------a uaca-)---- 1261 ---------- ---------- --aa--guu- u-aAAGGAGC |--------- aGGUAUCA-- 1321 -GGCACACU- -----(-uac aa-------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UGA C|ACCUU-GU --|------- (-uca--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG CUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UAAauca ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-ACAG A-------AA AACGGC|GUA AAGGGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------auua -aaaauacua aauaaa--gu -----|UAAA ACUCAA-CUg ----cGCU(G 2341 UAAUA)CGCC CU-------A GUUG-ACAUU AAA------- ----auacgc -aAC(-UUAC 2401 -)GU|g---- ----acuuua ccaa------ -u-------- gcu-gaagAC ACUAA-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CCA 2521 A--GGUA-GU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(uaac)a a---A-ACUA 2701 C-C|--C|GC C-AGAG-AAC UACUAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC CCUUCUAGCU ---------- ---------- 2881 (-------ua -a-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --ACA)GGG- -----(uac- 3181 ca-)------ A-AGUGAGCA AAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-GG-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AAcaua 4021 ---------- ------ACGG --AUUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-AA-G--AC -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGGG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aauua-agu 4381 aaccu-ucaa uaccuaau-g agaauacgcc aaaa-a---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGACAA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.D.byrne 5213 bp RNA RNA 02-AUG-1997 DEFINITION Mitochondrion Dasyuroides byrnei.; . ACCESSION AF0098 8 KEYWORDS . SOURCE Mitochondrion Dasyuroides byrnei. ORGANISM Mitochondrion Dasyuroides byrnei. REFERENCE 1 (bases 1 to 957) AUTHORS Krajewski,C., Young,J., Buckley,L., Woolley,P.A. and Westerman ,M. TITLE Trees Reconstructing the Taxonomic Radiation of Dasyurine Marsupials with Cytochrome b, 12S rRNA, and Protamine P1 Gene JOURNAL J. Mammal. Evol. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 957) AUTHORS Young,J., Westerman,M. and Krajewski,C. TITLE Direct Submission JOURNAL Submitted (24-JUN-1997) Genetics and Human Variation, La Trobe University, Bundoora, Melbourne, Victoria 3083, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF009888 BASE COUNT 334 a 207 c 178 g 238 t 4256 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUG-UUAAUU -C-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAAUCCAGU GAGUA---UG C|CCU-Cuua --ac-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----ca cauu-)---- 1261 ---------- ---------- --aa--gcc- u-aGAGGAGC |--------- aGGUAUCA-- 1321 -GGCACACU- -----(-uau aaa------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UGA C|ACCUU-GU --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UAAauca ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-ACAG A-------AG AACGGC|GUA AAGGGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------auuu -aaucuauua aauaaa--gu -----|UAAA ACUUAA-CUA ----uGCU(G 2341 UAAUA)CGCU CU-------A GUUA-AUAUU AAA------- ----auacgc -aAC(-UUAC 2401 -)GU|g---- ----acuuua ccaa------ -u-------- gcu-gaagAC ACUAA-AGCU 2461 A-AGG---UA UAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CCU 2521 A--GGUA-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aca(uaac)a a---A-ACUA 2701 C-C|--C|GC C-AGAG-AAC UACUAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUCACC UCUUCUAGCU ---------- ---------- 2881 (-------ua -u-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU cAC-|CCC(A --ACA)GGG- -----(cua- 3181 ua-)------ A-AGUGAGCG AAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaauc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-GA-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AAcaua 4021 ---------- ------ACGG --AUUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) A-AA-G--AC -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACA--GGCA 4261 AUAGGG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aauuaagu- 4381 aaccu-ucua uaccuaauaa gaauacgcca aaaa-a---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGACAA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.D.albop 5213 bp RNA RNA 02-AUG-1997 DEFINITION Mitochondrion Dasyurus albopunctatus.; . ACCESSION AF0098 0 KEYWORDS . SOURCE Mitochondrion Dasyurus albopunctatus. ORGANISM Mitochondrion Dasyurus albopunctatus. REFERENCE 1 (bases 1 to 956) AUTHORS Krajewski,C., Young,J., Buckley,L., Woolley,P.A. and Westerman ,M. TITLE Trees Reconstructing the Taxonomic Radiation of Dasyurine Marsupials with Cytochrome b, 12S rRNA, and Protamine P1 Gene JOURNAL J. Mammal. Evol. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 956) AUTHORS Young,J., Westerman,M. and Krajewski,C. TITLE Direct Submission JOURNAL Submitted (24-JUN-1997) Genetics and Human Variation, La Trobe University, Bundoora, Melbourne, Victoria 3083, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF009890 BASE COUNT 335 a 210 c 177 g 234 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUCCCAGU GAGUA---UA C|CCU-Uuua --gc-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------c cuua-)---- 1261 ---------- ---------- --aa--gua- u-aAAGGAGU |--------- uGGuAUCA-- 1321 -GGCACACU- -----(-uaa uca------- ---------- ---------- ------)--- 1381 --AGC|---A GCCCA--UGA C|ACCUU-GU --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UAAauaa ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-ACAG A-------AA AACGGC|GUA AAGGGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a-ua -aaccucaca aauaaa--gu -----|UAAA ACUCAA-CUA ----cGCU(G 2341 UAAUA)CGCC CU-------A GUUG-AUAUU AAA------- ----auacgc -aAC(-UUAC 2401 -)GU|g---- ----acuuua cuau------ -c-------- gcu-gaagAC ACUAA-AGCU 2461 A-AGA---UA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CCU 2521 A--GGUA-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(uaac)a a---A-AUUA 2701 C-U|--C|GC C-AGAG-AAC UACUAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUCACC CCUUCUAGCU ---------- ---------- 2881 (-------ua -a-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CUC(A --AUA)GGG- -----(cgc- 3181 ca-)------ A-AGUGAGCA AAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --cuaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACA UAU------- ---------G 3841 A-G-GG-GG- GA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AAcaua 4021 ---------- ------ACGA --AUUGU-CC A-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) A-AA-G--AC -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGGG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gauaaagu- 4381 aaccu-ucaa uaccuaau-u agauauacgc uauaaaa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGACAA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.D.geoff 5213 bp RNA RNA 02-AUG-1997 DEFINITION Mitochondrion Dasyurus geoffroii.; . ACCESSION AF0098 1 KEYWORDS . SOURCE Mitochondrion Dasyurus geoffroii. ORGANISM Mitochondrion Dasyurus geoffroii. REFERENCE 1 (bases 1 to 954) AUTHORS Krajewski,C., Young,J., Buckley,L., Woolley,P.A. and Westerman ,M. TITLE Trees Reconstructing the Taxonomic Radiation of Dasyurine Marsupials with Cytochrome b, 12S rRNA, and Protamine P1 Gene JOURNAL J. Mammal. Evol. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 954) AUTHORS Young,J., Westerman,M. and Krajewski,C. TITLE Direct Submission JOURNAL Submitted (24-JUN-1997) Genetics and Human Variation, La Trobe University, Bundoora, Melbourne, Victoria 3083, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF009891 BASE COUNT 327 a 211 c 185 g 231 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cagAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUCCCAGU GAGUA---UG C|CCU-Uuua --gc-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------c acug-)---- 1261 ---------- ---------- --aa--gua- u-aAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACACU- -----(-uaa uua------- ---------- ---------- ------)--- 1381 --AGC|---A GCCCA--UGA C|ACCUU-GU --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UAAauaa ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-ACAG A-------AA AACGGC|GUA AAGGGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a-ua -aaccucaua aauaaa--gu -----|UAAA ACUCAA-CUA ----uGCU(G 2341 UAAUA)CGCC CU-------A GUUG-GCAUU AAA------- ----auauac -aAC(-UUAC 2401 -)GU|g---- ----acuuua cuac------ -u-------- gcu-gaagAC ACUAA-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CCU 2521 A--GGUA-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(uaac)a a---A-AUUA 2701 C-U|--C|GC C-AGAG-AAC UACUAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC CCUUCUAGCU ---------- ---------- 2881 (-------ua -a-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --AUA)GGG- -----(ccc- 3181 ca-)------ A-AGUGAGCA AAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --cuaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-GG-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AAcaua 4021 ---------- ------ACGG --AUUGU-CU A-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) A-GA-G--GC -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- guaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGGG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gauaaagu- 4381 aaccu-ucaa uaccuaau-- uagaauacgc uaaaaa---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGACAA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.D.macul 5213 bp RNA RNA 02-AUG-1997 DEFINITION Mitochondrion Dasyurus maculatus.; . ACCESSION AF0098 3 KEYWORDS . SOURCE Mitochondrion Dasyurus maculatus. ORGANISM Mitochondrion Dasyurus maculatus. REFERENCE 1 (bases 1 to 953) AUTHORS Krajewski,C., Young,J., Buckley,L., Woolley,P.A. and Westerman ,M. TITLE Trees Reconstructing the Taxonomic Radiation of Dasyurine Marsupials with Cytochrome b, 12S rRNA, and Protamine P1 Gene JOURNAL J. Mammal. Evol. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 953) AUTHORS Young,J., Westerman,M. and Krajewski,C. TITLE Direct Submission JOURNAL Submitted (24-JUN-1997) Genetics and Human Variation, La Trobe University, Bundoora, Melbourne, Victoria 3083, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF009893 BASE COUNT 334 a 212 c 179 g 228 t 4260 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GAGUA---UG C|CCU-Uuua --ac-ug--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------u uacu-)---- 1261 ---------- ---------- --aa--gua- u-aAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACACU- -----(-uaa uua------- ---------- ---------- ------)--- 1381 --AGC|---A GCCCA--UGA C|ACCUU-GU --|------- (-ucu--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UAAacaa ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-ACAG A-------AA AACGGC|GUA AAGGGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a-ca -uaccucaca aauaaa--gu -----|UAAA AGCUAA-CUA ----cGCU(G 2341 UAAUA)CGCC CU-------A GUUG-ACAUU AAA------- ----auacgc -aAC(-UUAC 2401 -)GU|g---- ----acuuua cuau------ -u-------- gcu-gaagAC ACUAA-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CUU 2521 A--GGUA-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(uaac)a a---A-AUUA 2701 C-U|--C|GC C-AGAG-AAC UACUAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC UCUUCUAGCU ---------- ---------- 2881 (-------aa -a-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --AUA)GGG- -----(uuc- 3181 ca-)------ A-AGUGAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---caaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-GA-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ac---)---- ---------- ---------- UAG-AAcaua 4021 ---------- ------ACGA --AUUGU-CU A-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-AA-G--AC -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGGG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aau-aaagu 4381 aacuu-uuaa uaccuaau-u agaauacgca aaaa-a---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGACAA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.D.spart 5213 bp RNA RNA 02-AUG-1997 DEFINITION Mitochondrion Dasyurus spartacus.; . ACCESSION AF0098 2 KEYWORDS . SOURCE Mitochondrion Dasyurus spartacus. ORGANISM Mitochondrion Dasyurus spartacus. REFERENCE 1 (bases 1 to 954) AUTHORS Krajewski,C., Young,J., Buckley,L., Woolley,P.A. and Westerman ,M. TITLE Trees Reconstructing the Taxonomic Radiation of Dasyurine Marsupials with Cytochrome b, 12S rRNA, and Protamine P1 Gene JOURNAL J. Mammal. Evol. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 954) AUTHORS Young,J., Westerman,M. and Krajewski,C. TITLE Direct Submission JOURNAL Submitted (24-JUN-1997) Genetics and Human Variation, La Trobe University, Bundoora, Melbourne, Victoria 3083, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF009892 BASE COUNT 329 a 212 c 182 g 231 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cagAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUCCCAGU GAGUA---UG C|CCU-Uuua --gc-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------u acug-)---- 1261 ---------- ---------- --aa--gua- u-aAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACACU- -----(-uaa uua------- ---------- ---------- ------)--- 1381 --AGC|---A GCCCA--UGA C|ACCUU-GU --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UAAauu- a--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-ACAG A-------AA AACGGC|GUA AAGGGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a-ua -aaccucaua aauaaa--gu -----|UAAA ACUCAA-CUA ----uGCU(G 2341 UAAUA)CGCC CU-------A GUUG-ACAUU AAA------- ----auauac -aAC(-UUAC 2401 -)GU|g---- ----acuuua cuac------ -u-------- gcu-gaagAC ACUAA-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CCU 2521 A--GGUA-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(uaac)a a---A-AUUA 2701 C-U|--C|GC C-AGAG-AAC UACUAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC CCUUCUAGCU ---------- ---------- 2881 (-------ua -a-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --AUA)GGG- -----(ccc- 3181 ca-)------ A-AGUGAGCA AAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --cuaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-GG-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AAcaua 4021 ---------- ------ACGG --AUUGC-CU A-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) A-GA-G--GC -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- guaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGGG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gauaaagu- 4381 aaccu-ucaa uaccuaau-- cagaauacac uaaaaa---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGACAA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.Mu.long 5213 bp RNA RNA 16-DEC-1997 DEFINITION Mitochondrion Murexia longicaudata.; . ACCESSION AF0380 5 KEYWORDS . SOURCE Mitochondrion Murexia longicaudata. ORGANISM Mitochondrion Murexia longicaudata. REFERENCE 1 (bases 1 to 954) AUTHORS Springer,M.S., Burk,A., Metcalf,A., Cleven,G.C., Lavergne,A., Douzery,E. and Catzeflis,F.M. TITLE Rates of 12S rRNA nucleotide substitution in mammals with evidence for rate acceleration in proboscideans JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 954) AUTHORS Springer,M.S., Burk,A., Metcalf,A., Cleven,G.C., Lavergne, A., Douzery,E. and Catzeflis,F.M. TITLE Direct Submission JOURNAL Submitted (10-DEC-1997) Biology, University of California, 1354 Spieth, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038015 BASE COUNT 323 a 196 c 195 g 240 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -A-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGAUCCAGU GAGUA---UG C|CCU-CUUA --ac-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----au ucu--)---- 1261 ---------- ---------- --ga--guu- u-uAAGGAGC |--------- aGGUAUCA-- 1321 -GGCACACUu c----(uuu- ---------- ---------- ---------- ------)--- 1381 gaAGU|---A GCCCA--UGA C|AUCUA-GU --|------- (-uuu--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UAAaaa- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGU-|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AGUUA-ACAG A-------AG AACGGC|GUA AAGUGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------auua -aagcauuaa aauaag--gu -----|UAAA AAUCAA-UUG ----AGCU(G 2341 UAAUA)CGCU AA-------G GUUG-AUAUA AAA------- ----auacgc -aAC(-UUAC 2401 -)GU|g---- ----acuuua ccag------ -c-------u gcu-gaagAC ACUAA-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CCG 2521 A--GGUA-GU |UG|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a---A-ACUA 2701 U-U|--C|GC C-AGAG-AAC UACAAGC(-- -UACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC UUUUCUAGCU ---------- ---------- 2881 (--------a u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --AUA)GGG- -----(uau- 3181 ua-)------ A-AGUGAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---uaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-G-AA-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AAuauc 4021 ---------- ------ACGG --AUUGU-CU A-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) A-AA-G--AC -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAGGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUGGGG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gauaaagu- 4381 aguuc-cccu auacc-uaau aagaauacgc aaaa-aa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAUAA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.roths 5213 bp RNA RNA 02-MAY-1998 DEFINITION Mitochondrion Murexia rothschildi.; . ACCESSION AF0383 5 KEYWORDS . SOURCE Mitochondrion Murexia rothschildi. ORGANISM Mitochondrion Murexia rothschildi. REFERENCE 1 (bases 1 to 954) AUTHORS Armstrong,L.A., Krajewski,C. and Westerman,M. TITLE cytochrome b, 12S rRNA, and protamine P1 genes Phylogeny of the dasyurid marsupial genus Antechinus based on JOURNAL J. Mammal. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 954) AUTHORS Westerman,M. and Krajewski,C. TITLE Direct Submission JOURNAL Submitted (12-DEC-1997) Zoology, Southern Illinois University, Carbondale, IL 62901-6501, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038315 BASE COUNT 318 a 205 c 197 g 234 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGACCCUGU GAGUA---UG C|CCU-Uuua --ac-u---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---uucu uu---)---- 1261 ---------- ---------- --ga--gca- u-aAAGGAGC |--------- aGGUAUCA-- 1321 -GGCACACUu -----(-cac ca-------- ---------- ---------- ------)--- 1381 -aAGU|---A GCCCA--UGA C|ACCUA-GU --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UAAaaa- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAG-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AGUUA-ACAG A-------AG AACGGC|GUA AAGUGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------guu ugaaccauga aauaaa--gu -----|UAAA GAUCAA-UUG ----AGCU(G 2341 UAAUA)CGCU AA-------G GUUG-AUGUU AAA------- ----auacac -aAC(-UUAC 2401 -)GU|g---- ----acuuug ccua------ -u-------u gcu-gaagAC ACUAA-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CCG 2521 A--GGUA-GU |UG|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a---A-ACUA 2701 U-U|--C|GC C-AGAG-AAC UACAAGC(-- -UACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC UCUCCUAGCC ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --AUA)GGG- -----(ugu- 3181 ca-)------ A-AGUGAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 G-A-AA-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u cu---)---- ---------- ---------- UAG-AAcauu 4021 ---------- ------ACGG --AUUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-AA-G--AC -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAGGA(- auaga-gu-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACA--GGCA 4261 AUAGGG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gauaaagu- 4381 agccu--cuc auacc-uaau aagauacgc- aaaa-aa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-AC- ACUUGGAUAA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.melas 5213 bp RNA RNA 02-AUG-1997 DEFINITION Mitochondrion Myoictis melas.; . ACCESSION AF0098 6 KEYWORDS . SOURCE Mitochondrion Myoictis melas. ORGANISM Mitochondrion Myoictis melas. REFERENCE 1 (bases 1 to 951) AUTHORS ,M. Krajewski,C., Young,J., Buckley,L., Woolley,P.A. and Westerman TITLE Marsupials with Cytochrome b, 12S rRNA, and Protamine P1 Gene Trees Reconstructing the Taxonomic Radiation of Dasyurine JOURNAL J. Mammal. Evol. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 951) AUTHORS Young,J., Westerman,M. and Krajewski,C. TITLE Direct Submission JOURNAL Submitted (24-JUN-1997) Genetics and Human Variation, La Trobe University, Bundoora, Melbourne, Victoria 3083, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF009886 BASE COUNT 322 a 215 c 192 g 222 t 4262 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCAGU GAGUA---UG C|CCU-Uuua --ac-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----aaa aa---)---- 1261 ---------- ---------- --ga--guu- u-aAAGGAGC |--------- gGGUAUCA-- 1321 -GGCACACU- -----(-uaa a--------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UGA C|ACCUU-GU --|------- (-uua--)-- -------AC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG UUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UAAacca ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AAUUA-ACAG A-------AG AACGGC|GUA AAGGGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a-uu -aggccucua aauaaa--gu -----|UAAA AAUCGA-CUG ----cGCU(G 2341 UAAUA)CGCC CU-------A GUUG-AUAUU AAA------- ----auacac -aAC(-UUAC 2401 -)GU|g---- ----acuuua -ccc------ -au------- gcu-gaggAC ACCAA-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CUA 2521 A--GGUA-GU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(uaac)a a---A-ACUA 2701 C-U|--C|GC C-AGAG-AAC UACUAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC CCUUCUAGCU ---------- ---------- 2881 (-------ua -u-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --ACA)GGG- -----(uuc- 3181 ca-)------ A-AGUGAGCA AAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---guaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA CAU------- ---------G 3841 A-A-GG-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AAcaua 4021 ---------- ------ACGG --AUUGC-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-AA-G--GC -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGGG-UG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gauaaagu- 4381 aaccu-uuaa uaccuaau-- uagaauacgc caaaaa---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)GGU-GC- ACUUGGACAA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.walla 5213 bp RNA RNA 02-AUG-1997 DEFINITION Mitochondrion Myoictis wallacei.; . ACCESSION AF0098 7 KEYWORDS . SOURCE Mitochondrion Myoictis wallacei. ORGANISM Mitochondrion Myoictis wallacei. REFERENCE 1 (bases 1 to 951) AUTHORS Krajewski,C., Young,J., Buckley,L., Woolley,P.A. and Westerman ,M. TITLE Trees Reconstructing the Taxonomic Radiation of Dasyurine Marsupials with Cytochrome b, 12S rRNA, and Protamine P1 Gene JOURNAL J. Mammal. Evol. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 951) AUTHORS Young,J., Westerman,M. and Krajewski,C. TITLE Direct Submission JOURNAL Submitted (24-JUN-1997) Genetics and Human Variation, La Trobe University, Bundoora, Melbourne, Victoria 3083, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF009887 BASE COUNT 324 a 217 c 193 g 217 t 4262 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCAGU GAGUA---UG C|CCU-Uuua --ac-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----aca aau--)---- 1261 ---------- ---------- --aa--gua- u-aAAGGAGC |--------- gGGUAUCA-- 1321 -GGCACACU- -----(-uaa a--------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UGA C|ACCUU-GU --|------- (-uug--)-- -------AC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG UUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UAAauca ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-ACAG A-------AG AACGGC|GUA AAGGGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--u -gagccacca aauaaa--gu -----|UAAA AAUCGA-CUG ----cGCU(G 2341 UAAUA)CGCC CU-------A GUUG-AUACU AAA------- ----auacgc -aAC(-UUAC 2401 -)GU|g---- ----acuuua cccg------ -c-------- gcu-gaggAC ACCAA-AGCU 2461 A-AGG---CA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CCA 2521 A--GGUA-GU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(uaac)a a---A-ACUA 2701 C-U|--C|GC C-AGAG-AAC UACUAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC CCUUCUAGCU ---------- ---------- 2881 (-------ua -u-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --ACA)GGG- -----(ccc- 3181 aa-)------ A-AGUGAGCA AAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA CAU------- ---------G 3841 A-A-GG-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AAcaua 4021 ---------- ------ACGG --AUUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-AA-G--GC -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGGG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gauaaagu- 4381 aaccu-uuaa uaccuaau-- uagaauacgc caaaaa---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGACAA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.N.loren 5213 bp RNA RNA 02-AUG-1997 DEFINITION Mitochondrion Neophascogale lorentzii.; . ACCESSION AF0098 4 KEYWORDS . SOURCE Mitochondrion Neophascogale lorentzii. ORGANISM Mitochondrion Neophascogale lorentzii. REFERENCE 1 (bases 1 to 954) AUTHORS Krajewski,C., Young,J., Buckley,L., Woolley,P.A. and Westerman ,M. TITLE Trees Reconstructing the Taxonomic Radiation of Dasyurine Marsupials with Cytochrome b, 12S rRNA, and Protamine P1 Gene JOURNAL J. Mammal. Evol. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 954) AUTHORS Young,J., Westerman,M. and Krajewski,C. TITLE Direct Submission JOURNAL Submitted (24-JUN-1997) Genetics and Human Variation, La Trobe University, Bundoora, Melbourne, Victoria 3083, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF009894 BASE COUNT 331 a 211 c 184 g 228 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCAGU GAGUA---UG C|CCU-Uuua --ac-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----aa aua--)---- 1261 ---------- ---------- --ga--guc- u-aAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACACU- -----(-uaa gua------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UGA C|ACCUU-GU --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-UAUGAAC( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-AUCA-U- AA-UAA-aua a--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-ACAG A-------ag AACGGC|GUA AAGGGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------gcgc -aaccccuca aauaaa--gu -----|UAAA GAUCAA-CUG ----cGCU(G 2341 UAAUA)CGCC UU-------A GUUG-AUAUU AAA------- ----auacac -aAC(-UUAC 2401 -)GU|g---- ----acuuua uuaa------ -u-------- gcu-gaagAC ACUAA-AGCU 2461 A-AGA---UA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CCU 2521 A--GGUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aa-(uaac)a a---A-AUCA 2701 C-U|--C|GC C-AGAG-AAC UACAAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUA- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC CCUUCUCGCA ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(U --AUA)GGG- -----(ccc- 3181 aa-)------ A-AGUGAGCA AAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-GG-GG- GA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c au---)---- ---------- ---------- UAG-AAcaua 4021 ---------- ------ACGA --AUUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-UA-G--AC -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGGG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gauaaagu- 4381 aaccu-ucaa uaccuaau-- uagaauacgc caaaaa---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAUAA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.N.ridei 5213 bp RNA RNA 02-AUG-1997 DEFINITION Mitochondrion Ningaui ridei.; . ACCESSION AF0019 7 KEYWORDS . SOURCE Mitochondrion Ningaui ridei. ORGANISM Mitochondrion Ningaui ridei. REFERENCE 1 (bases 1 to 956) AUTHORS Krajewski,C., Blacket,M., Buckley,L. and Westerman,M. TITLE the Dasyurid marsupial subfamily Sminthopsinae A multigene assessment of phylogenetic relationships within JOURNAL Mol. Phylogenet. Evol. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 956) AUTHORS Blacket,M.J. and Westerman,M. TITLE Direct Submission JOURNAL Submitted (02-MAY-1997) Genetics and Human Variation, LaTrobe University, Bundoora, Melbourne, Victoria 3083, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF001937 BASE COUNT 334 a 218 c 187 g 217 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCGGU GAGUA---AG C|CCU-UAAA --ac-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----aa cccu-)---- 1261 ---------- ---------- --ga--gcu- u-uAAGGAGC |--------- gGGUAUCA-- 1321 -GGCACACU- -----(-uuc aaa------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UAA C|ACCUU-GU --|------- (-aaa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UAAaaac c--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------a aguuaacaga 1861 ------agaa cggc|guaaa guguguuua- agc---aaaa uaacucu--- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-UCA-- 1981 A~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|- ---------- 2281 ---------- ---------- --uaag--gu -----|UAAA AAACAA-CUG ----uGCU(G 2341 UAAUA)CGCC CU-------A GUUG-UAAUU AAA------- ----auacac -aAC(-UAAC 2401 -)GU|g---- ----acuuua cccu------ cu-------- gcu-gaagAC ACUAA-AGCU 2461 A-AGG---UC CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CCG 2521 A--GGUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ga(caac)g a---A-AUUA 2701 C-U|--C|GC C-AGAG-AAC UACGAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC CCUUCUCGCU ---------- ---------- 2881 (-------ug -a-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(U --ACA)GGG- -----(ccc- 3181 aa-)------ A-AGUGAGCA GAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU AAU------- ---------G 3841 G-A-GG-GG- GA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c uc---)---- ---------- ---------- UAG-AAcaca 4021 ---------- ------ACGA --AAUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) A-AA-G--AU -A--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUC--GGCA 4261 AUAGGG-UG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aacaaagua 4381 acuua-cuaa uuccuaau-a agaauacaua aaaa-a---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAAUA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.N.timea 5213 bp RNA RNA 02-AUG-1997 DEFINITION Mitochondrion Ningaui timealeyi.; . ACCESSION AF0019 9 KEYWORDS . SOURCE Mitochondrion Ningaui timealeyi. ORGANISM Mitochondrion Ningaui timealeyi. REFERENCE 1 (bases 1 to 956) AUTHORS Krajewski,C., Blacket,M., Buckley,L. and Westerman,M. TITLE A multigene assessment of phylogenetic relationships within the Dasyurid marsupial subfamily Sminthopsinae JOURNAL Mol. Phylogenet. Evol. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 956) AUTHORS Blacket,M.J. and Westerman,M. TITLE Direct Submission JOURNAL Submitted (02-MAY-1997) Genetics and Human Variation, LaTrobe University, Bundoora, Melbourne, Victoria 3083, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF001939 BASE COUNT 335 a 216 c 189 g 216 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCGGU GAGUA---AG C|CCU-Uaaa --ac-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----ugc cca--)---- 1261 ---------- ---------- --ga--gua- u-uAGGGAGC |--------- gGGUAUCA-- 1321 -GGCACGCU- -----(-uau uuaa------ ---------- ---------- ------)--- 1381 --AGC|---A GCCCA--UGA C|ACCUU-GU --|------- (-aca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UAAaaac c--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------a aauuaacaga 1861 ------agua cggc|guaaa guguguuua- agc---aaaa caaucuc--- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CC~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|- ---------- 2281 ---------- ---------- aauaag--gu -----|UAAA AAACAA-CUG ----uGCU(G 2341 UAAUA)CGCC AA-------A GUUG-UAAUU AAA------- ----auacgc -aAC(-UAAC 2401 -)GU|g---- ----accuua ucuu------ au-------- gcu-gaagAC ACUAA-AGCU 2461 A-AGA---UC CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CCG 2521 A--GGUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aa-(uaac)g a---A-AUUA 2701 C-U|--C|GC C-AGAG-AAC UACGAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC CCUUCUCGCC ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --ACA)GGG- -----(auc- 3181 ag-)------ A-AGUGAGCA AAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU AAU------- ---------G 3841 A-A-GG-GG- GA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c uc---)---- ---------- ---------- UAG-AAcaua 4021 ---------- ------ACGA --AAUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-AG-G--AU -A--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCA 4261 AUAGGG-UG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aacaaaac- 4381 accca-acaa uaccuaauaa guaua---ga ucaaaaa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAAUA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.N.yvonn 5213 bp RNA RNA 02-AUG-1997 DEFINITION Mitochondrion Ningaui yvonneae.; . ACCESSION AF0019 8 KEYWORDS . SOURCE Mitochondrion Ningaui yvonneae. ORGANISM Mitochondrion Ningaui yvonneae. REFERENCE 1 (bases 1 to 956) AUTHORS Krajewski,C., Blacket,M., Buckley,L. and Westerman,M. TITLE A multigene assessment of phylogenetic relationships within the Dasyurid marsupial subfamily Sminthopsinae JOURNAL Mol. Phylogenet. Evol. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 956) AUTHORS Blacket,M.J. and Westerman,M. TITLE Direct Submission JOURNAL Submitted (02-MAY-1997) Genetics and Human Variation, LaTrobe University, Bundoora, Melbourne, Victoria 3083, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF001938 BASE COUNT 330 a 223 c 190 g 213 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCGGU GAGUA---AG C|CCU-Uaaa --ac-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----cac ccuu-)---- 1261 ---------- ---------- --aa--gcu- u-uAGGGAGC |--------- gGGUAUCA-- 1321 -GGCACACU- -----(-ucc aaa------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UGA C|ACCUU-GU --|------- (-aca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AUA----C-A 1501 GCA|GUA-AC UAACAUUGAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UAAaaac c--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------a aguuaacaga 1861 ------agaa cggc|guaaa guguguuua- agc---aaaa uaacccc--- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|- ---------- 2281 ---------- ---------- -auaag--gu -----|UAAA AAACAA-CUG ----uGCU(G 2341 UAAUA)CGCC CU-------A GUUG-UAAUU AAA------- ----auacac -aAC(-UAAC 2401 -)GU|g---- ----acuuua cccc------ au-------- gcu-gaagAC ACUAA-AGCU 2461 A-AGG---UC CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CCG 2521 A--GGUA-GU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(uaac)g a---A-ACUA 2701 C-U|--C|GC C-AGAG-AAC UACGAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC CCUUCUCGCU ---------- ---------- 2881 (-------ug -a-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(C --AAA)GGG- -----(cuc- 3181 aa-)------ A-AGUGAGCU AAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCU AAU------- ---------G 3841 G-A-GG-GG- GA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c uu---)---- ---------- ---------- UAG-AAcaca 4021 ---------- ------ACGA --AAUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) A-AA-G--AU -A--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUC--GGCA 4261 AUAGGG-UG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aacaaagua 4381 acuua-c-aa uaccuaaua- --agacuacg uaggaaa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGGAAUA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.calur 5213 bp RNA RNA 02-MAY-1998 DEFINITION Mitochondrion Phascogale calura.; . ACCESSION AF0383 6 KEYWORDS . SOURCE Mitochondrion Phascogale calura. ORGANISM Mitochondrion Phascogale calura. REFERENCE 1 (bases 1 to 955) AUTHORS Armstrong,L.A., Krajewski,C. and Westerman,M. TITLE cytochrome b, 12S rRNA, and protamine P1 genes Phylogeny of the dasyurid marsupial genus Antechinus based on JOURNAL J. Mammal. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 955) AUTHORS Westerman,M. and Krajewski,C. TITLE Direct Submission JOURNAL Submitted (12-DEC-1997) Zoology, Southern Illinois University, Carbondale, IL 62901-6501, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038316 BASE COUNT 330 a 203 c 183 g 239 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUG-UUAAUU -C-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAAUCCAGU GAGUA---UG C|CCU-Uuua --ac-u---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---ucuc auu--)---- 1261 ---------- ---------- --aa--gcc- u-aGAGGAGC |--------- aGGUAUCA-- 1321 -GGCACACUu -----(--au aa-------- ---------- ---------- ------)--- 1381 -aAGU|---A GCCCA--UGA C|ACCUu-GU --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UAAauua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-ACAG A-------AG AACGGC|GUA A-GUGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------auu uaaucuauua aauaaa--gu -----|UAAA ACUUAA-CUA ----UGCU(G 2341 UAAUA)CGCU CU-------A GUUA-AUAUU AAA------- ----auacgc -aAC(-UUAC 2401 -)GU|g---- ----acuuua ccaa------ -u-------u gcu-gaagAC ACUAA-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAUAC) CCUA-CUAU| -GCUU-AGC- CAUAAA-CCG 2521 A--GGUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aga(uaac)a a---A-ACUA 2701 U-U|--C|GC C-AGAG-AAC UACAAGC(-- -UACC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC UUUCCUGGCU ---------- ---------- 2881 (--------g u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --ACA)GGG- -----(uac- 3181 aa-)------ A-AGUGAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 G-A-AA-GG- GA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AAcaua 4021 ---------- ------ACGG --AUUGC-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-UA-A--GC -A--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUC--GGCA 4261 AUAGGG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gauaaagu- 4381 aacuu--ucu auacc-uaau aagaauacgc aaaa-aa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAUAA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.tapoa 5213 bp RNA RNA 11-JAN-191 DEFINITION Phascogale tapoatafa. ACCESSION No information KEYWORDS No information. SOURCE Phascogale tapoatafa. ORGANISM Phascogale tapoatafa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U33497 LOCUS PTU33497 957 bp DNA MAM 16-NOV-1995 DEFINITION Phascogale tapoatafa 12S rRNA gene, mitochondrial gene encoding mitochondrial rRNA, complete sequence. ACCESSION U33497 KEYWORDS . SOURCE Phascogale tapoatafa. ORGANISM Mitochondrion Phascogale tapoatafa Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Osteichthyes; Sarcopterygii; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Phascogale. REFERENCE 1 (bases 1 to 957) AUTHORS Springer,M.S., Hollar,L.J. and Burk,A. TITLE Compensatory substitutions and the evolution of the mitochondrial 12S rRNA gene in mammals JOURNAL Mol. Biol. Evol. 12 (1995) In press REFERENCE 2 (bases 1 to 957) AUTHORS Burk,A. TITLE Direct Submission JOURNAL Submitted (09-AUG-1995) Angela Burk, University of California, Biology, Riverside, CA 92521, USA COMMENT NCBI gi: 1065406 FEATURES Location/Qualifiers source 1..957 /mitochondrion /organism="Phascogale tapoatafa" rRNA 1..957 /product="12S rRNA" BASE COUNT 311 a 205 c 208 g 233 t ORIGIN BASE COUNT 311 a 205 c 208 g 233 t 4256 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGACCCAGU GAGUA---UG C|CCU-UUUA --gc-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----uc uua--)---- 1261 ---------- ---------- --ga--gua- u-aGAGGAGC |--------- aGGUAUCA-- 1321 -GGCACACUu c----(uau- ---------- ---------- ---------- ------)--- 1381 gaAGU|---A GCCCA--UGA C|ACCUA-GU --|------- (-uug--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG CUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UAAauaa ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AGUUA-ACAG A-------AG AACGGC|GUA AAGUGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ----aauaag -aauuuucca aauaag--gu -----|UAAA GAUCGA-CUA ----AGCU(G 2341 UAAUA)CGCU CA-------G GUUG-AUGAU AAA------- ----auacgc -aAC(-UUAC 2401 -)GU|g---- ----acuuua ccuc------ -c-------u gcu-gaggAC ACUAA-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CCG 2521 A--GGUA-GU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ca(uaac)a a---G-ACUA 2701 C-C|--C|GC C-AGAG-AAC UACAAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUCACC UCUCCUAGCU ---------- ---------- 2881 (--------g u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --AUA)GGG- -----(uac- 3181 aa-)------ A-AGUGAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 G-A-AA-GG- GA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AAcaua 4021 ---------- ------ACGG --AUUGC-CU G-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-UA-G--GC -A--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUC--GGCA 4261 AUGGGG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gauaaagu- 4381 agcuu-ucua uaccuaau-a aga-guacgu agaa-aa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)GGU-GC- ACUUGGAUGA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.loren 5213 bp RNA RNA 02-AUG-1997 DEFINITION Mitochondrion Phascolosorex lorentzii.; . ACCESSION AF0098 5 KEYWORDS . SOURCE Mitochondrion Phascolosorex lorentzii. ORGANISM Mitochondrion Phascolosorex lorentzii. REFERENCE 1 (bases 1 to 956) AUTHORS Krajewski,C., Young,J., Buckley,L., Woolley,P.A. and Westerman ,M. TITLE Marsupials with Cytochrome b, 12S rRNA, and Protamine P1 Gene Trees Reconstructing the Taxonomic Radiation of Dasyurine JOURNAL J. Mammal. Evol. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 956) AUTHORS Young,J., Westerman,M. and Krajewski,C. TITLE Direct Submission JOURNAL Submitted (24-JUN-1997) Genetics and Human Variation, La Trobe University, Bundoora, Melbourne, Victoria 3083, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF009895 BASE COUNT 328 a 215 c 183 g 230 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -U-UUAC-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCAGU GAGUA---UG C|CCU-Uuua --au-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----uc aca--)---- 1261 ---------- ---------- --aa--guc- u-aAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACACU- -----(-uau aua------- ---------- ---------- ------)--- 1381 --AGC|---A GCCCA--UGA C|ACCUU-GU --|------- (-uca--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AG-UAAaua- a--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -CAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-ACAG A-------ag AACGGC|GUA AAGGGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------acau -aacccauua aauaaa--gu -----|UAAA AAUCAA-CUA ----CGCU(G 2341 UAAUA)CGCC CC-------A GUUG-AUAUU AAA------- ----auacac -gAC(-UAAC 2401 -)AU|g---- ----acuuua cuaa------ -u-------- gcu-gaagAC ACUAA-AGCU 2461 A-AGG---GA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CCU 2521 A--GGUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- auu(uaac)a a---A-AUUA 2701 C-U|--C|GC C-AGAG-AAC UACAAGC(-- -UACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC CCUUCUCGCC ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(U --AUA)GGG- -----(ucc- 3181 a--)------ A-AGUGAGCA AAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -augaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-GG-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u gc---)---- ---------- ---------- UAG-AAcaca 4021 ---------- ------ACGA --AUUGU-CC A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-AG-G--AU -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUA--GGCA 4261 AUAGGG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gauaaagu- 4381 aauac-uaua uaccuaauuu gaa--uacgc cauaaa---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)GGU-GC- ACUUGGAUAA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.giles 5213 bp RNA RNA 02-AUG-1997 DEFINITION Mitochondrion Planigale gilesi.; . ACCESSION AF0019 3 KEYWORDS . SOURCE Mitochondrion Planigale gilesi. ORGANISM Mitochondrion Planigale gilesi. REFERENCE 1 (bases 1 to 955) AUTHORS Krajewski,C., Blacket,M., Buckley,L. and Westerman,M. TITLE the Dasyurid marsupial subfamily Sminthopsinae A multigene assessment of phylogenetic relationships within JOURNAL Mol. Phylogenet. Evol. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 955) AUTHORS Blacket,M.J. and Westerman,M. TITLE Direct Submission JOURNAL Submitted (02-MAY-1997) Genetics and Human Variation, LaTrobe University, Bundoora, Melbourne, Victoria 3083, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF001943 BASE COUNT 322 a 213 c 197 g 223 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCGGU GAGUA---UG C|CCC-Cagg --ac-ug--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----aau acu--)---- 1261 ---------- ---------- --ga--guc- u-uCGGGAGC |--------- aGGUAUCA-- 1321 -GGCACACU- -----(-cgu uuag------ ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UGA C|ACCUA-GU --|------- (-cua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AUA----C-A 1501 GCA|GUG-AC UAAUAUUGAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUUA-U- AA-UAAaaac c--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------g aauuaacaga 1861 ------ugaa cggc|guaaa guguguuua- agc---aaaa ugucuac--- GGGUU|-GGU 1921 -CAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-C~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|- ---------- 2281 ---------- ---------a aauaaa--gu -----|UAAA AAUCAA-CUG ----uGCU(G 2341 UAAUA)CGCC CU-------A GUUG-ACAUU AAA------- ----auacgc -aAC(-UAAC 2401 -)GU|g---- ----acuuua cccc------ -u-------- gcu-gaagAC ACUAA-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CCG 2521 A--GGUA-GU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aa-(uaac)g a---G-ACUA 2701 C-U|--C|GC C-AGAG-AAC UACGAGC(-- -CACC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC UCUCCUAGCU ---------- ---------- 2881 (-------aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --UCA)GGG- -----(uuc- 3181 aa-)------ A-AGUGAGCA UAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 G-A-GG-GG- GA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c au---)---- ---------- ---------- UAG-AAcaca 4021 ---------- ------ACGA --AGUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) A-AA-G--AU -A--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCA 4261 AUAGGG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aac---au- 4381 aguaa-cuua uaauaccuaa uaaaaauacg uaggaaa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AAGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAUUA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.ingra 5213 bp RNA RNA 02-AUG-1997 DEFINITION Mitochondrion Planigale ingrami.; . ACCESSION AF0019 2 KEYWORDS . SOURCE Mitochondrion Planigale ingrami. ORGANISM Mitochondrion Planigale ingrami. REFERENCE 1 (bases 1 to 956) AUTHORS Krajewski,C., Blacket,M., Buckley,L. and Westerman,M. TITLE the Dasyurid marsupial subfamily Sminthopsinae A multigene assessment of phylogenetic relationships within JOURNAL Mol. Phylogenet. Evol. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 956) AUTHORS Blacket,M.J. and Westerman,M. TITLE Direct Submission JOURNAL Submitted (02-MAY-1997) Genetics and Human Variation, LaTrobe University, Bundoora, Melbourne, Victoria 3083, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF001942 BASE COUNT 322 a 213 c 200 g 221 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCAGU GAGUA---UG C|CCC-Cagg --ac-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----uau acu--)---- 1261 ---------- ---------- --ga--guc- u-uCGGGAGC |--------- gGGUAUCA-- 1321 -GGCACACU- -----(-cuc uag------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UGA C|ACCUA-GU --|------- (-cua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUUA-U- AA-UAAaaac c--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------g aguuaacaga 1861 ------caaa cggc|guaaa guguguuua- agc---aaaa uguccac--- GGGUU|-GGU 1921 -CAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-C~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|- ---------- 2281 ---------- ---------a aauaag--gu -----|UAAA AGUUAA-CUG ----uGCU(G 2341 UAAUA)CGCC AU-------A GUUG-ACAGU AAA------- ----auacgc -aAC(-UUAC 2401 -)GU|g---- ----acuuua cccc------ cu-------- gcu-gaagAC ACUAA-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CCG 2521 A--GGUA-GU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aa-(uaac)g a---G-ACUA 2701 U-U|--C|GC C-AGAG-AAC UACGAGC(-- -CACC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC UUUCCUAGCU ---------- ---------- 2881 (-------aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --AGA)GGG- -----(uuc- 3181 aa-)------ A-AGUGAGCA UAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 G-A-AA-GG- GA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ac---)---- ---------- ---------- UAG-AAcaca 4021 ---------- ------ACGA --AGUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-AA-G--AU -A--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- guaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCA 4261 AUAGGG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aacauagua 4381 acuua-uaaa uaccuaauaa gaguac---g uaggaaa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AAGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAUUA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.m.mac 5213 bp RNA RNA 02-AUG-1997 DEFINITION Mitochondrion Planigale maculata maculata.; . ACCESSION AF0019 0 KEYWORDS . SOURCE Mitochondrion Planigale maculata maculata. ORGANISM Mitochondrion Planigale maculata maculata. REFERENCE 1 (bases 1 to 954) AUTHORS Krajewski,C., Blacket,M., Buckley,L. and Westerman,M. TITLE the Dasyurid marsupial subfamily Sminthopsinae A multigene assessment of phylogenetic relationships within JOURNAL Mol. Phylogenet. Evol. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 954) AUTHORS Blacket,M.J. and Westerman,M. TITLE Direct Submission JOURNAL Submitted (02-MAY-1997) Genetics and Human Variation, LaTrobe University, Bundoora, Melbourne, Victoria 3083, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF001940 BASE COUNT 322 a 218 c 193 g 221 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCGGU GAGUA---UG C|CCC-Cagg --ac-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---aaua uuu--)---- 1261 ---------- ---------- --ga--guc- u-uCAGGAGC |--------- aGGUAUCA-- 1321 -GGCACACU- -----(-cuu uag------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UGA C|ACCUA-GU --|------- (-cua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AUA----C-A 1501 GCA|GCG-AC UAACAUUGAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUUA-U- AA-UAAaaac c--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------g aauuaacaga 1861 ------caaa cggc|guaaa guguguuua- agc---aaaa uguccac--- GGGUU|-GGU 1921 -CAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-C~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|- ---------- 2281 ---------- ---------a aauaag--gu -----|UAAA AAUCAA-CUG ----uGCU(G 2341 UAAUA)CGCC GU-------A GUUG-ACAUU AAA------- ----auacgc -aAC(-UUAC 2401 -)GU|g---- ----acuuua cccc------ -u-------- gcu-gaagAC ACUAA-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CUG 2521 A--GGUA-GU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aa-(uaac)g a---G-ACUA 2701 U-U|--C|GC C-AGAG-AAC UACGAGC(-- -CAUC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC UUUCCUAGCU ---------- ---------- 2881 (-------aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CC CAC-|CCC(A --AGA)GGG- -----(ucc- 3181 aa-)------ A-AGUGGGCA UAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 G-A-AA-GG- GA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c au---)---- ---------- ---------- UAG-AAcaca 4021 ---------- ------ACGA --AGUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-AA-G--AU -A--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--GGCA 4261 AUAGGG-UG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aacauagu- 4381 aa-cu-gcua uaccuaauaa gaa--ua--c aucaaaaa-- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-CGA-U AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)AGU-GC- ACUCGGAUUA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.m.sin 5213 bp RNA RNA 02-AUG-1997 DEFINITION Mitochondrion Planigale maculata sinualis.; . ACCESSION AF0019 1 KEYWORDS . SOURCE Mitochondrion Planigale maculata sinualis. ORGANISM Mitochondrion Planigale maculata sinualis. REFERENCE 1 (bases 1 to 955) AUTHORS Krajewski,C., Blacket,M., Buckley,L. and Westerman,M. TITLE A multigene assessment of phylogenetic relationships within the Dasyurid marsupial subfamily Sminthopsinae JOURNAL Mol. Phylogenet. Evol. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 955) AUTHORS Blacket,M.J. and Westerman,M. TITLE Direct Submission JOURNAL Submitted (02-MAY-1997) Genetics and Human Variation, LaTrobe University, Bundoora, Melbourne, Victoria 3083, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF001941 BASE COUNT 332 a 215 c 190 g 218 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCGGU GAGUA---UG C|CCU-Cagg --ac-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---aaua cuu--)---- 1261 ---------- ---------- --ga--guc- u-uCAGGAGC |--------- aGGUAUCA-- 1321 -GGCACACU- -----(-cuu uag------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UGA C|ACCUA-GU --|------- (-cua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUUA-U- AG-UAAaaac c--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------g aauuaacaga 1861 ------caaa cggc|guaaa guguguuua- agc---aaaa uguccac--- GGGUU|-GGU 1921 -CAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-C~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|- ---------- 2281 ---------- ---------a aauaag--gu -----|UAAA AAUCAA-CUG ----uGCU(G 2341 UAAUA)CGCC AU-------A GUUG-ACAUU AAA------- ----auacgc -aAC(-UUAC 2401 -)GU|g---- ----acuuua cccc------ -u-------- gcu-gaagAC ACUAA-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CUG 2521 A--GGUA-GU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aa-(uaac)g a---G-ACUA 2701 U-U|--C|GC C-AGAG-AAC UACGAGC(-- -CAUC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC UCUCCUAGCU ---------- ---------- 2881 (-------aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(G --AGA)GGG- -----(ucc- 3181 aa-)------ A-AGUGAGCA UAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 G-A-AA-GG- GA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ac---)---- ---------- ---------- UAG-AAcaca 4021 ---------- ------AUGA --AGUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-AA-G--AU -A--CGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACA--GGCA 4261 AUAGGG-CG- CGUACACA-C -CGCCCGUCA C-UCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aacauaaa- 4381 caaac-caaa uaacuaauaa aaua----aa uacauaaa-- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAAG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGGAUCA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.bilar 5213 bp RNA RNA 02-AUG-1997 DEFINITION Mitochondrion Parantechinus bilarni.; . ACCESSION AF0098 4 KEYWORDS . SOURCE Mitochondrion Parantechinus bilarni. ORGANISM Mitochondrion Parantechinus bilarni. REFERENCE 1 (bases 1 to 953) AUTHORS Krajewski,C., Young,J., Buckley,L., Woolley,P.A. and Westerman ,M. TITLE Trees Reconstructing the Taxonomic Radiation of Dasyurine Marsupials with Cytochrome b, 12S rRNA, and Protamine P1 Gene JOURNAL J. Mammal. Evol. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 953) AUTHORS Young,J., Westerman,M. and Krajewski,C. TITLE Direct Submission JOURNAL Submitted (24-JUN-1997) Genetics and Human Variation, La Trobe University, Bundoora, Melbourne, Victoria 3083, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF009884 BASE COUNT 334 a 215 c 181 g 223 t 4260 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCAGU GAGUA---UG C|CCU-Uuua --ac-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------u caca-)---- 1261 ---------- ---------- --aa--guc- u-aAAGGAGC |--------- aGGUAUCA-- 1321 -GGCACACU- -----(-uaa aa-------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UAA C|ACCUU-GU --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UAAauaa ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUUA-ACAG A-------AC AACGGC|GUA AAGGGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------auuc -auca-uaca aauaaa--gu -----|UAAA GCUCAA-CUA ----cGCU(G 2341 UAAUA)CGCC AU-------A GUUG-ACAUU AAA------- ----auacgc -aAC(-UUAC 2401 -)GU|g---- ----acuuua ccaa------ -u-------- gcu-gaagAC ACUAA-AGCU 2461 A-AGA---UA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CCA 2521 A--GGUA-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(uaac)a a---A-AUUA 2701 C-U|--C|GC C-AGAG-AAC UACUAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC CCUUCUAGCC ---------- ---------- 2881 (-------ua -u-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --AUA)GGG- -----(ccc- 3181 aa-)------ A-AGUGAGCA AAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --cuaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-GG-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u gc---)---- ---------- ---------- UAG-AAcaca 4021 ---------- ------ACGG --AUUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) A-AA-G--AC -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGGG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aau-aaagu 4381 aaccu-ucga uaccuaau-a agaauacgcc aaaa-a---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGACAA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.macdo 5213 bp RNA RNA 02-AUG-1997 DEFINITION Mitochondrion Pseudantechinus macdonnellensis.; . ACCESSION AF0098 5 KEYWORDS . SOURCE Mitochondrion Pseudantechinus macdonnellensis. ORGANISM Mitochondrion Pseudantechinus macdonnellensis. REFERENCE 1 (bases 1 to 956) AUTHORS ,M. Krajewski,C., Young,J., Buckley,L., Woolley,P.A. and Westerman TITLE Reconstructing the Taxonomic Radiation of Dasyurine Marsupials with Cytochrome b, 12S rRNA, and Protamine P1 Gene Trees JOURNAL J. Mammal. Evol. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 956) AUTHORS Young,J., Westerman,M. and Krajewski,C. TITLE Direct Submission JOURNAL Submitted (24-JUN-1997) Genetics and Human Variation, La Trobe University, Bundoora, Melbourne, Victoria 3083, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF009885 BASE COUNT 330 a 215 c 180 g 231 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCAGU GAGUA---UG C|CCU-Uuuu --ac-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------a uacu-)---- 1261 ---------- ---------- --ga--guc- u-aAAGGAGC |--------- aGGUAUCA-- 1321 -GGCACACU- -----(-uau uaaa------ ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UAA C|ACCUU-GU --|------- (-uca--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUUA-U- AA-UAAauu- a--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-ACAG A-------AG AACGGC|GUA AAGGGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------auuu -aaucuccua aauaaa--gu -----|UAAA ACUCAA-CUA ----cGCU(G 2341 UAAUA)CGCC CC-------A GUUG-AUAUU AAA------- ----auacgc -aAC(-UUAC 2401 -)GU|g---- ----acuuua cuaa------ -u-------- gcu-gaagAC ACUAA-AGCU 2461 A-AGA---UA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CCU 2521 A--GGUA-GU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(uaac)a a---A-ACUA 2701 C-U|--C|GC C-AGAG-AAC UACUAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAUACC 2821 C--------- ----)CGAUA C-ACCUCACC CCUUCUAGCU ---------- ---------- 2881 (-------ua -u-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --AUA)GGG- -----(ccc- 3181 aa-)------ A-AGUGAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --cuaaacc- 3781 ---------A UAAAAA-CGU C-AGGUCAAG G|UGUA|GCA AAU------- ---------G 3841 A-A-GG-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AAcaua 4021 ---------- ------ACGA --AUUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-AA-G--AC -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGGG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aau-aaagu 4381 aaccu-ucca uaccuaau-a agaauacgcc aaaa-a---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGACAA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.ningb 5213 bp RNA RNA 02-AUG-1997 DEFINITION Mitochondrion Pseudantechinus ningbing.; . ACCESSION AF0098 6 KEYWORDS . SOURCE Mitochondrion Pseudantechinus ningbing. ORGANISM Mitochondrion Pseudantechinus ningbing. REFERENCE 1 (bases 1 to 635) AUTHORS ,M. Krajewski,C., Young,J., Buckley,L., Woolley,P.A. and Westerman TITLE Reconstructing the Taxonomic Radiation of Dasyurine Marsupials with Cytochrome b, 12S rRNA, and Protamine P1 Gene Trees JOURNAL J. Mammal. Evol. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 635) AUTHORS Young,J., Westerman,M. and Krajewski,C. TITLE Direct Submission JOURNAL Submitted (24-JUN-1997) Genetics and Human Variation, La Trobe University, Bundoora, Melbourne, Victoria 3083, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF009896 BASE COUNT 227 a 143 c 121 g 144 t 4578 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~~~~~~~~ -~-~~~~~~~ |~~~~~--~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ --~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~-)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~ca aauaaa--gu -----|Uaaa acUCAA-CUa ----cGCU(G 2341 UAAUA)CGCc cu-------A GUUG-AUAUU AAA------- ----auacgc -aAC(-UUAC 2401 -)GU|g---- ----acuuua cuaa------ -u-------- gcu-gaagAC ACUAA-AGCU 2461 A-AGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CUA 2521 A--GGUA-GU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(uaac)a a---A-ACUA 2701 C-U|--C|GC C-AGAG-AAC UACUAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC UCUUCUAGCU ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --ACA)GGG- -----(ccc- 3181 aa-)------ A-AGUGAGCA AAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA CAU------- ---------G 3841 A-A-GG-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u gc---)---- ---------- ---------- UAG-AAcaca 4021 ---------- ------ACGG --AUUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAA--u-) A-AA-G--AC -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACA--GGCA 4261 AUGAAG-CG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -a-guauagu 4381 aaccu-ucua uaccuaau-a agaauacgcc aauaua---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGACAA UC-------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.tenui 5213 bp RNA RNA 02-AUG-1997 DEFINITION Mitochondrion Planigale tenuirostris.; . ACCESSION AF0019 4 KEYWORDS . SOURCE Mitochondrion Planigale tenuirostris. ORGANISM Mitochondrion Planigale tenuirostris. REFERENCE 1 (bases 1 to 956) AUTHORS Krajewski,C., Blacket,M., Buckley,L. and Westerman,M. TITLE the Dasyurid marsupial subfamily Sminthopsinae A multigene assessment of phylogenetic relationships within JOURNAL Mol. Phylogenet. Evol. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 956) AUTHORS Blacket,M.J. and Westerman,M. TITLE Direct Submission JOURNAL Submitted (02-MAY-1997) Genetics and Human Variation, LaTrobe University, Bundoora, Melbourne, Victoria 3083, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF001944 BASE COUNT 321 a 213 c 198 g 224 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGCCCGGU GAGUA---UG C|CCC-Cagg --ac-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----aau ucc--)---- 1261 ---------- ---------- --ga--guc- u-uCGGGAGU |--------- gGGUAUCA-- 1321 -GGCACACU- -----(-cuu uag------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UGA C|ACCUA-GU --|------- (-cua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAA----C-A 1501 GCA|GUA-AC UAACAUUGAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUUA-U- AA-UAAaaac c--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------g aauuaacaga 1861 ------cgaa cggc|guaaa guguguuua- agc---aaaa uguuuac--- GGGUU|-GGU 1921 -CAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-C~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|- ---------- 2281 ---------- ---------a aauaaa--gu -----|UAAA AGUCAA-CUG ----uGCU(G 2341 UAAUA)CGCC CU-------U GUUG-ACAGU AAA------- ----auacgc -aAC(-UUAC 2401 -)GU|g---- ----acuuua cccu------ gu-------- gcu-gaagAC ACUAA-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CGUAAA-CUG 2521 A--GGUA-GU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aa-(uaac)g a---G-ACUA 2701 U-U|--C|GC C-AGAG-AAC UACGAGC(-- -CAUC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CCCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC UCUCCUAGCC ---------- ---------- 2881 (-------aa -u-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --AUA)GGG- -----(ccc- 3181 aa-)------ A-AGUGAGCA UAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 G-A-AA-GG- GA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c au---)---- ---------- ---------- UAG-AAcaca 4021 ---------- ------ACGA --AGUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-AA-G--AU -A--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--GGCA 4261 AUAGGG-UG- CGUACACA-C -CGCUUGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aacacagua 4381 gcuua-aaca uaccuaauaa gaguac---g uaagaaa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AAGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAUUA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.wooll 5213 bp RNA RNA 02-AUG-1997 DEFINITION Mitochondrion Pseudantechinus woolleyae.; . ACCESSION AF0098 3 KEYWORDS . SOURCE Mitochondrion Pseudantechinus woolleyae. ORGANISM Mitochondrion Pseudantechinus woolleyae. REFERENCE 1 (bases 1 to 955) AUTHORS Krajewski,C., Young,J., Buckley,L., Woolley,P.A. and Westerman ,M. TITLE Marsupials with Cytochrome b, 12S rRNA, and Protamine P1 Gene Trees Reconstructing the Taxonomic Radiation of Dasyurine JOURNAL J. Mammal. Evol. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 955) AUTHORS Young,J., Westerman,M. and Krajewski,C. TITLE Direct Submission JOURNAL Submitted (24-JUN-1997) Genetics and Human Variation, La Trobe University, Bundoora, Melbourne, Victoria 3083, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF009883 BASE COUNT 337 a 210 c 179 g 229 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCAGU GAGUA---UG C|CCU-Uuua --ac-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----aa acu--)---- 1261 ---------- ---------- --aa--gua- u-aAAGGAGC |--------- aGGUAUCA-- 1321 -GGCACACU- -----(-uac uaaa------ ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UAA C|ACCUU-GU --|------- (-uca--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- GA-UAAauaa ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-ACAG A-------AA AACGGC|GUA AAGGGUGUUU -A-AAC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ----auuuaa -ucuacca-- aauaaa--gu -----|UAAA ACUCAA-CUA ----CGCU(G 2341 UAAUA)CGCC AC-------A GUUG-AUAUU AAA------- ----auacgc -aAC(-UUAC 2401 -)GU|g---- ----acuuua uuaa------ -u-------- guu-gaagAC ACUAA-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- UGUAAA-CUA 2521 A--GGUA-GU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uca(uaac)a a---A-ACUA 2701 C-U|--C|GC C-AGAG-AAC UACUAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC CCUUCUAGCU ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---c---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --AUA)GGG- -----(ccc- 3181 ag-)------ A-AGUGAGCA AAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-GG-GG- GA-AGC--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c au---)---- ---------- ---------- UAG-AAcauu 4021 ---------- ------ACGG --AUUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-AA-G--AC -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGGG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aauaaagu- 4381 aaccu-ucca uaccuaau-- aagaauacgc aaaaaa---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-AC- ACUUGGACAA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.crass 5213 bp RNA RNA 05-MAY-1997 DEFINITION Sminthopsis crassicaudata.; 12S ribosomal RNA. ACCESSION L28087 KEYWORDS 12S ribosomal RNA. SOURCE Sminthopsis crassicaudata. ORGANISM Sminthopsis crassicaudata. REFERENCE 1 (bases 1 to 956) AUTHORS Gemmell,N.J. and Westerman,M. TITLE Phylogenetic relationships within the class Mammalia- a study using mitochondrial 12S rRNA sequences JOURNAL J. Mamm. Evol. 2, 3-23 (1994) STANDARD No information REFERENCE 2 (bases 1 to 956) AUTHORS Westerman,M. TITLE Direct Submission JOURNAL Submitted (27-JAN-1997) Genetics, LaTrobe University, Bundoora, Melbourne, Victoria, 3083, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L28087 BASE COUNT 330 a 209 c 189 g 228 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAGUCCGGU GAGUA---UG C|CCU-UAAA --ac-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----ug ucca-)---- 1261 ---------- ---------- --ga--gcu- u-uAGGGAGC |--------- aGGUAUCA-- 1321 -GGCACACU- -----(-auu aaa------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UGA C|ACCUU-GU --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-AAUAAAC( ---------- ----GCAA)G UUUGA-CUA| 1561 A|-AUUA-U- AG-UAAaaac c--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------g aauuaacaga 1861 ------aaaa cggc|guaaa guguguuua- agc---uaaa uaaccag--- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC--Uu-- 1981 AA~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|- ---------- 2281 ---------- ---------- --uaag--gu -----|UAAA aauCAA-CUg ----uGCU(G 2341 UAAUA)CGCc cU-------A GUUG-uAAUU AAA------- ----auacac -aAC(-UAAC 2401 -)GU|g---- ----acuuua cuac------ cu-------- gcu-gaagAC ACUAA-AGCU 2461 A-AGG---UC CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CUA 2521 A--GGUA-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uaa(uaac)g a---A-AUUA 2701 C-U|--C|GC C-AGAG-AAC UACGAGU(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC CCUUCUUGCC ---------- ---------- 2881 (-------ca -a-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --ACA)GGG- -----(uuc- 3181 aa-)------ A-AGUGAGCA AAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 G-A-GG-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c uu---)---- ---------- ---------- UAG-AAcaca 4021 ---------- ------ACGA --AAUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) A-AA-G--AU -A--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AAU--GGCA 4261 AUAGGG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aacaaagua 4381 gccca-cuua uaccuaau-a agauuacgua aaaa-a---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAAUA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.macro 5213 bp RNA RNA 02-AUG-1997 DEFINITION Mitochondrion Sminthopsis macroura.; . ACCESSION AF0019 5 KEYWORDS . SOURCE Mitochondrion Sminthopsis macroura. ORGANISM Mitochondrion Sminthopsis macroura. REFERENCE 1 (bases 1 to 954) AUTHORS Krajewski,C., Blacket,M., Buckley,L. and Westerman,M. TITLE the Dasyurid marsupial subfamily Sminthopsinae A multigene assessment of phylogenetic relationships within JOURNAL Mol. Phylogenet. Evol. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 954) AUTHORS Blacket,M.J. and Westerman,M. TITLE Direct Submission JOURNAL Submitted (02-MAY-1997) Genetics and Human Variation, LaTrobe University, Bundoora, Melbourne, Victoria 3083, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF001935 BASE COUNT 329 a 218 c 190 g 217 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCUAUCCGGU GAGUA---CG C|CCU-Uaaa --cc-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----uac cac--)---- 1261 ---------- ---------- --ga--gcu- u-uAGGGAGC |--------- aGGCAUCA-- 1321 -GGCACACU- -----(-cuu aaa------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCa--UGA C|ACCUC-GU --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUUA-U- AA-UAAaaac c--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------a aauuaacaga 1861 ------aaaa cggc|guaaa guguguuua- agc---aaaa uaaacuu--- GGGUU|-GGU 1921 -Aaa-u---u UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-C~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|- ---------- 2281 ---------- ---------- aauaag--gu -----|UAAG AAUCAA-CUG ----uGCU(G 2341 UAAUA)CGCC UU-------A GUUG-UUAUC AAA------- ----auacgc -aAC(-UAAC 2401 -)GU|g---- ----acuuua ccaa------ cu-------- gcu-gaagAC ACUAA-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CUG 2521 A--GGUA-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(uaac)g a---A-AUUA 2701 C-U|--C|GC C-AGAG-AAC UACGAGC(-- -CACC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC CCUCCUUGCC ---------- ---------- 2881 (-------ca -a-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CC CAC-|CCC(A --AUA)GGG- -----(ucc- 3181 aa-)------ A-AGUGGGCA AAA-CCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 G-A-GG-GG- GA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c uu---)---- ---------- ---------- UAG-AAcaua 4021 ---------- ------ACGG --AAUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) A-AA-G--AU -A--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AAU--GGCA 4261 AUAGGG-UG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aauaaagu- 4381 aaaca-ccca uaccuaaua- -agaguac-g uaggaaa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-U AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGGAAUA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.murin 5213 bp RNA RNA 02-AUG-1997 DEFINITION Mitochondrion Sminthopsis murina.; . ACCESSION AF0019 4 KEYWORDS . SOURCE Mitochondrion Sminthopsis murina. ORGANISM Mitochondrion Sminthopsis murina. REFERENCE 1 (bases 1 to 954) AUTHORS Krajewski,C., Blacket,M., Buckley,L. and Westerman,M. TITLE the Dasyurid marsupial subfamily Sminthopsinae A multigene assessment of phylogenetic relationships within JOURNAL Mol. Phylogenet. Evol. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 954) AUTHORS Blacket,M.J. and Westerman,M. TITLE Direct Submission JOURNAL Submitted (02-MAY-1997) Genetics and Human Variation, LaTrobe University, Bundoora, Melbourne, Victoria 3083, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF001934 BASE COUNT 336 a 221 c 184 g 213 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -U-UUAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCGGU GAGUA---UG C|CCC-Uaaa --cc-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----aa ccac-)---- 1261 ---------- ---------- --ga--gcu- u-cAGGGAGU |--------- aGGCAUCA-- 1321 -GGCACACU- -----(-cuu caa------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UGA C|ACCUC-GU --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UAAaaac c--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------a aauuaacaga 1861 ------agaa cggc|guaaa guguguuua- agc---aaaa uauuccc--- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U AUGAUU|--- -AAC-C~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|- ---------- 2281 ---------- ---------a aauaag--gu -----|UAAA AAUCAA-CUG ----uGCU(G 2341 UAAUA)CGCC AU-------A GUUG-ACAUC AAA------- ----auaugc -aAC(-UAAC 2401 -)GU|g---- ----acauua cccc------ -u-------- gcu-gaagAC ACUAA-AGCU 2461 G-AGA---CC CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CUG 2521 A--GGUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aa-(uaac)g a---A-AUUA 2701 C-U|--C|GC C-AGAG-AAC UACGAGC(-- -CACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CUCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC CCUUCUCGCU ---------- ---------- 2881 (-------ca -a-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --ACA)GGG- -----(uuc- 3181 aa-)------ A-AGUGAGCA AAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 G-A-GG-GG- GA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c uc---)---- ---------- ---------- UAG-AAcaca 4021 ---------- ------ACGG --AAUGU-CU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-AA-G--AC -A--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AAU--GGCA 4261 AUAGGA-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aacaaagu- 4381 aa--u-cuau aauaccuaau aaa---a--c uacaaaaaaa ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------g UAGA-AGA-U AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAAUA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (19)-Didel 5213 bp RNA RNA 25-JAN-1994 DEFINITION Didelphimorphia. ACCESSION No information KEYWORDS No information. SOURCE Didelphimorphia. ORGANISM Didelphimorphia. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.C.phila 5213 bp RNA RNA 15-DEC-1997 DEFINITION Mitochondrion Caluromys philander.; . ACCESSION AF0380 4 KEYWORDS . SOURCE Mitochondrion Caluromys philander. ORGANISM Mitochondrion Caluromys philander. REFERENCE 1 (bases 1 to 1023) AUTHORS Springer,M.S. TITLE Molecular clocks and the timing of the placental and marsupial radiations in relation to the Cretaceous-Tertiary boundary JOURNAL J. Mammal. Evol. 4 (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1023) AUTHORS Springer,M.S. TITLE Direct Submission JOURNAL Submitted (09-DEC-1997) Biology, University of California, 1354 Spieth, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038014 BASE COUNT 353 a 195 c 164 g 243 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUG-UUAAUU -A-UAAU-UA |GA-AC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCUGU GAGAA---UG C|CCU-CAAg --ac-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----cu auaa-)---- 1261 ---------- ---------- --gaa-gau- u-aGAGGAGC |--------- cGGUAUCA-- 1321 -GGCACACU- -----(-aua a--------- ---------- ---------- ------)--- 1381 --UGU|---A GCCCA--UUA C|ACCUU-GC --|------- (-uca--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACC----C-A 1501 GCA|GUG-AC UAACAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUCA-U- AA-UUUaacu a--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-ACAG A-------GU AACGGC|GUA AAGCGUGUUU -A-AGU---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -uaaauauaa aauaaa--gu -----|UAAU GCCUAG-CUA ----AACU(G 2341 UAAUA)CGUA AU-------A GCUA-AUGCU AAA------- ----auaaac -aAU(-UAAA 2401 -)AU|g---- ----acuuua auau------ -a-------- acu-gauaAU ACGAC-AACU 2461 A-AGA---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCU 2521 A--AAUA-GU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- gca(caac)a a---A-ACUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 C--------- ----)CGAUA U-ACCCAACC CUUUUUUGCC ---------- ---------- 2881 (-------au ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CC CAC-|CUU(A --AAA)AAG- -----(uuu- 3181 aa-)------ U-AGUAAGCA UAA-UUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---uauucc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------A 3841 A-A-AG-GG- AA-AGA--AA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c au---)---- ---------- ---------- UAG-AGaacu 4021 ---------- ------ACGA --AUCAU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-AA-A--AU -GcuUGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGGG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gaaauaaau- 4381 c-uau-uaaa uuacuaauaa caauauauaa gucaa----- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAAUA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.D.virgi 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Didelphis virginiana. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Didelphis virginiana. ORGANISM Mitochondrion Didelphis virginiana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z29573 ID DVMTGNME standard; DNA; MAM; 17084 BP. XX AC Z29573; XX DT 27-JAN-1994 (Rel. 38, Created) DT 27-JAN-1994 (Rel. 38, Last updated, Version 1) XX DE D.virginiana mitochondrial DNA complete genome XX KW ATP sythase subunit 6; ATP sythase subunit 8; cytochrome b; KW cytochrome c oxidase subunit 1; cytochrome c oxidase subunit 2; KW cytochrome c oxidase subunit 3; NADH dehydrogenase subunit 1; KW NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; KW NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; KW NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; KW transfer RNA-Ala; transfer RNA-Asn; transfer RNA-Asp; KW transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Gly; KW transfer RNA-His; transfer RNA-Leu; transfer RNA-Lys; KW transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; KW transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; KW transfer RNA-Tyr. XX OS Didelphis virginiana OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; OC Theria; Metatheria; Marsupialia; Marsupicarnivora; Didelphidae. XX RN [1] RP 1-17084 RA Janke A., Feldmaier-Fuchs G., Thomas K., von Haeseler A., Paabo S.; RT "The marsupial mitochondrial genome and the evolution of placental RT mammals"; RL Genetics 0:0-0(1994). XX RN [2] RP 1-17084 RA Janke A.; RT ; RL Submitted (21-JAN-1994) to the EMBL/GenBank/DDBJ databases. RL Axel Janke, University of Munich, Department of Zoology, RL Luisenstrasse 14, D-80021 Munich, Germany XX FH Key Location/Qualifiers FH FT source 1..17084 FT /organism="Didelphis virginiana" FT /dev_stage="adult" FT /isolate="fresh road killed idividual" FT /tissue_type="liver" FT /chromosome="complete mitochondrial genome" FT tRNA 1..70 FT /note="tRNA-Phe" FT /anticodon=(pos:32..34,aa:Phe) FT rRNA 72..1022 FT /note="12S rRNA" FT tRNA 1024..1095 FT /note="tRNA-Val" FT /anticodon=(pos:1058..1060,aa:Val) FT rRNA 1096..2665 FT /note="16S rRNA" FT tRNA 2666..2739 FT /note="tRNA-Leu (UUR)" FT /anticodon=(pos:2693..2695,aa:Leu) FT CDS 2741..3696 FT /product="NADH dehydrogenase subunit 1" FT /transl_table=2 FT tRNA 3697..3765 FT /note="tRNA-Ile" FT /anticodon=(pos:3726..3728,aa:Ile) FT tRNA complement(3763..3832) FT /note="tRNA-Gln" FT /anticodon=(pos:3799..3801,aa:Gln) FT tRNA 3833..3901 FT /note="tRNA-Met" FT /anticodon=(pos:3863..3865,aa:Met) FT CDS 3902..4945 FT /product="NADH dehydrogenase subunit 2" FT /transl_table=2 FT tRNA complement(4943..5011) FT /note="tRNA-Ala" FT /anticodon=(pos:4979..4981,aa:Ala) FT tRNA complement(5021..5086) FT /note="tRNA-Cys" FT /anticodon=(pos:5055..5057,aa:Cys) FT tRNA 5097..5167 FT /note="tRNA-Trp" FT /anticodon=(pos:5130..5132,aa:Trp) FT tRNA complement(5254..5325) FT /note="tRNA-Asn" FT /anticodon=(pos:5291..5293,aa:Asn) FT tRNA 5328..5395 FT /note="tRNA-Tyr" FT /anticodon=(pos:5364..5366,aa:Tyr) FT CDS 5397..6938 FT /product="cytochrome c oxidase subunit 1" FT /transl_table=2 FT tRNA complement(6940..7008) FT /note="tRNA-Ser (UCN)" FT /anticodon=(pos:6976..6978,aa:Ser) FT tRNA 7012..7081 FT /note="tRNA-Asp (GUC)" FT /anticodon=(pos:7043..7045,aa:Asp) FT /note="the second nucleotide of the anticodon is edited at FT the RNA-level from C to U, restoring the normal anticodon FT GUC for tRNA-Asp" FT CDS 7084..7791 FT /product="cytochrome c oxidase subunit 2" FT /transl_table=2 FT tRNA 7766..7824 FT /note="tRNA-Lys" FT /anticodon=(pos:7787..7789,aa:Lys) FT CDS 7827..8036 FT /product="ATP sythase subunit 8" FT /transl_table=2 FT CDS 7991..8670 FT /product="ATP sythase subunit 6" FT /transl_table=2 FT CDS 8671..9516 FT /product="cytochrome c oxidase subunit 3" FT /transl_table=2 FT tRNA 9455..9522 FT /note="tRNA-Gly" FT /anticodon=(pos:9485..9487,aa:Gly) FT CDS 9520..9870 FT /product="NADH dehydrogenase subunit 3" FT /transl_table=2 FT tRNA 9869..9938 FT /note="tRNA-Arg" FT /anticodon=(pos:9900..9902,aa:Arg) FT CDS 9939..10235 FT /product="NADH dehydrogenase subunit 4L" FT /transl_table=2 FT CDS 10229..11653 FT /product="NADH dehydrogenase subunit 4" FT /transl_table=2 FT tRNA 11607..11675 FT /note="tRNA-His" FT /anticodon=(pos:11637..11639,aa:His) FT tRNA 11676.11731 FT /note="tRNA-Ser (AGY)" FT /anticodon=(pos:11694..11696,aa:Ser) FT tRNA 11733..11803 FT /note="tRNA-Leu (CUN)" FT /anticodon=(pos:11765..11767,aa:Leu) FT CDS 11804..13603 FT /product="NADH dehydrogenase subunit 5" FT /transl_table=2 FT CDS complement(13600..14106) FT /product="NADH dehydrogenase subunit 6" FT /transl_table=2 FT tRNA complement(14107..14175) FT /note="tRNA-Glu" FT /anticodon=(pos:14143..14145,aa:Glu) FT CDS 14177..15325 FT /product="cytochrome b" FT /transl_table=2 FT tRNA 15334..15401 FT /note="tRNA-Thr" FT /anticodon=(pos:15364..15366,aa:Thr) FT tRNA complement(15404..15469) FT /note="tRNA-Pro" FT /anticodon=(pos:15437..15439,aa:Pro) FT misc_feature 15470..17084 FT /note="control region" XX SQ Sequence 17084 BP; 6034 A; 3613 C; 2056 G; 5381 T; 0 other; BASE COUNT 365 a 188 c 157 g 241 t 4262 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---auAGGUU 661 (UGG-)U-CC U|AGCCU-UA UUA-UUAGUU -C-UAAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCUACCCAGU GAGAA---UG C|CCU-uuaa gucu-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----ua aau--)---- 1261 ---------- ---------- --ua--agc- a-aAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACACA- -----(aaa- ---------- ---------- ---------- ------)--- 1381 --UGU|---A GCCGA--UAA C|ACCUU-GC --|------- (-uuu--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AGA----C-A 1501 GCA|GUG-AU UAAAAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUCA-U- AA-UUUacau ua-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAA A--------U AACGGC|GUA AAGAGUGUUU -A-AGU---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -auauacaaa aauaaa--gu -----|UAAU AAUUAA-CUA ----AACU(G 2341 UAGCA)CGUU CU-------A GUUA-AUAUU AAA------- ----auacau -aAU(-AAAA 2401 -)AU|g---- ----acuuua auau------ -c-------- acc-gacuAC ACGAA-AACU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGU- AAUAAA-CUA 2521 A--AAUA-AU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aac(aaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AAUU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCAGACC UUAUCUUGCC ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU AAC-|CUU(U --AAA)AAG- -----(aau- 3181 ua-)------ C-AGUAAGCA AAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----acaac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-U-AA-GG- AA-AGU--AA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ua---)---- ---------- ---------- UAG-AGcaua 4021 ---------- ------ACGA --AUCAU-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAcua-) A-AA-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCA 4261 AUAGGG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aacauaaua- 4381 aucca-ac-a uaccuaauac aauuauucau uaaa------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC ACGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAAUA ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.L.crass 5213 bp RNA RNA 11-JAN-191 DEFINITION Lutreolina crassicaudata. ACCESSION No information KEYWORDS No information. SOURCE Lutreolina crassicaudata. ORGANISM Lutreolina crassicaudata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U33494 LOCUS LCU33494 953 bp DNA MAM 16-NOV-1995 DEFINITION Lutreolina crassicaudata 12S rRNA gene, mitochondrial gene encoding mitochondrial rRNA, complete sequence. ACCESSION U33494 KEYWORDS . SOURCE thick-tailed opossum. ORGANISM Mitochondrion Lutreolina crassicaudata Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Osteichthyes; Sarcopterygii; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Lutreolina. REFERENCE 1 (bases 1 to 953) AUTHORS Springer,M.S., Hollar,L.J. and Burk,A. TITLE Compensatory substitutions and the evolution of the mitochondrial 12S rRNA gene in mammals JOURNAL Mol. Biol. Evol. 12 (1995) In press REFERENCE 2 (bases 1 to 953) AUTHORS Burk,A. TITLE Direct Submission JOURNAL Submitted (09-AUG-1995) Angela Burk, University of California, Biology, Riverside, CA 92521, USA COMMENT NCBI gi: 1065403 FEATURES Location/Qualifiers source 1..953 /mitochondrion /organism="Lutreolina crassicaudata" rRNA 1..953 /product="12S rRNA" BASE COUNT 349 a 194 c 164 g 246 t ORIGIN BASE COUNT 349 a 194 c 164 g 246 t 4260 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|AGCCU-UA UUA-UUAGUU -C-AAAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCUACCCAGU GAGAA---UG C|CCU-UAGA ---a-cuu-- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----uu uaa--)---- 1261 ---------- ---------- --ag--uaa- u-aAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACACA- -----(ccu- ---------- ---------- ---------- ------)--- 1381 --UGU|---A GCCAA--UUA C|ACCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU UAAUAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUCA-U- AA-UUUacau ua-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -CAA-U---A UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -GAC-CCA-- 1981 AAUUA-AUAA U-------UU GCCGGC|GUA AAGUGUGUUU -A-AGU---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -aaauuaaaa aauaaa--gu -----|UAAU AAUUAA-CUA ----AACU(G 2341 UAGCA)CGUU CU-------A GUUA-AUAUU AAA------- ----auacac -aAU(-AAAA 2401 -)AU|g---- ----acuuua auac------ -u-------- acc-gacuAC ACGAC-AACU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGU- AAUAAA-CUA 2521 A--AAUA-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(aaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-GAC UACUAGC(-- -CAUU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAGA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCCGACC UUAUCUUGCC ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU AAC-|CUU(U --AAA)AAG- -----(aac- 3181 ua-)------ U-AGUAGGCA AAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cuuac- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCG UAU------- ---------G 3841 A-U-AA-GG- AA-AGU--AA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c uau--)---- ---------- ---------- UAG-AGcaua 4021 ---------- ------ACGA --AUCAC-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAaua-) A-AG-U--GC -U--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- guaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCA 4261 AUAGGG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aacau-aa- 4381 uuacc-uaga uaccuaauac ua-ucauuca ucaa-aa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAAUA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (19)-Dipro 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.A.rufes 5213 bp RNA RNA 06-NOV-1997 DEFINITION Mitochondrion Aepyprymnus rufescens.; . ACCESSION AF0279 9 KEYWORDS . SOURCE Mitochondrion Aepyprymnus rufescens. ORGANISM Mitochondrion Aepyprymnus rufescens. REFERENCE 1 (bases 1 to 1164) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE The phylogenetic position of the musky rat kangaroo and the evolution of bipedal hopping in kangaroos (Macropodidae : Diprotodontia) JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1164) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE Direct Submission JOURNAL Submitted (02-OCT-1997) Biology, University of California, 1354 Spieth, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF027999 BASE COUNT 362 a 209 c 160 g 220 t 4262 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUA-UUAAUU -A-UAAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAAUCCGGU GAGAA---UG C|CCU-AAAG --au-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------a ag---)---- 1261 ---------- ---------- --ca--aau- caaCAGGAGC |--------- aGGUAUCA-- 1321 -GGCACACU- -----(--a- a--------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--CAA C|GCCUU-GC --|------- (-uaa--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AC UAAUAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UUAauua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUC|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -GAC-CCA-- 1981 AAUUA-AUAG A------uCA CACGGC|GUA AAGCGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------cua -aac-cu-ac aauaaa--gc -----|UAAG ACUUAA-CUA ----AACU(G 2341 UAAUA)CGCU CU-------A GUUA-ACAUU AAA------- ----auacau -aAC(-CAAA 2401 -)GU|a---- ----gcuuua accc------ -u-------- gcu-gaauAC ACUAC-AGCU 2461 A-AGA---GA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CUA 2521 A--GAUA-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a aaa(caac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACAAGC(-- -CAAU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAUACC 2821 C--------- ----)CGAUA A-ACCUUACC CUUUCUUGCC ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU AAC-|CUC(A --ACA)GAG- -----(aca- 3181 aa-)------ A-AGUAAGCA AAA-CCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---uaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-AA-GG- AA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a au---)---- ---------- ---------- UAG-AAcauc 4021 ---------- -----aACGA --AUUAU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-GaaAU -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-gu-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGGG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aacucaaaa- 4381 -c-ua-ccaa uaacuaau-u aauuauuuaa caaa-a---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)GGU-GC- ACUUGGAACA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.D.doria 5213 bp RNA RNA 06-NOV-1997 DEFINITION Mitochondrion Dendrolagus dorianus.; . ACCESSION AF0279 9 KEYWORDS . SOURCE Mitochondrion Dendrolagus dorianus. ORGANISM Mitochondrion Dendrolagus dorianus. REFERENCE 1 (bases 1 to 1164) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE :Diprotodontia) The phylogenetic position of the musky rat kangaroo and the evolution of bipedal hopping in kangaroos (Macropodidae JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1164) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE Direct Submission JOURNAL Submitted (02-OCT-1997) Biology, University of California, 1354 Spieth, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF027989 BASE COUNT 353 a 204 c 173 g 218 t 4265 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUG-UUAAUU -G-UAGU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCUGCCCGGU GAGAA---UG C|CCU-CAAA --au-ug--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------a aa---)---- 1261 ---------- ---------- --ca--aau- uaaCAGGAGC |--------- gGGCAUCA-- 1321 -GGCACACU- -----(--ac a--------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UAA C|GCCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AC UAAUAUUAAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUUA-U- AA-CUAacua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-ACAG A-------CA AACGGC|GUA AAGCGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------uua -aa-g-acac aauaaa--gc -----|UAAA AUCUAA-CUU ----AGCA(G 2341 UAGUA)UGCU CU-------A GUUA-AUAUU AAA------- ----auacau -aAC(-GAAA 2401 -)GU|a---- ----gcuuua auca------ -u-------- gcu-gaacAC ACUAC-AGCU 2461 A-AGA---GA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- UUUAAA-CUA 2521 A--GAUA-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(uaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -CAAU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|ACGGUG- CUCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCCCACC UUUUCUUGCC ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CC AAC-|CCC(A --CUA)GGG- -----(aca- 3181 ag-)------ A-AGUAAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-AA-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a gu---)---- ---------- ---------- UAG-AAuaca 4021 ---------- ------GCGA --AUUAU-CU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAcc--) U-GA-GcaAU -A--UGAAG- -AAGGAUUUA 4141 G-U--AGUAA A-CUAAGA(- guaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGAG-CG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< --aacaaaa- 4381 uucca-caaa uaacuaau-a agacaagaua uaaa-a---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAACA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.D.goodf 5213 bp RNA RNA 06-NOV-1997 DEFINITION Mitochondrion Dendrolagus goodfellowi.; . ACCESSION AF0279 0 KEYWORDS . SOURCE Mitochondrion Dendrolagus goodfellowi. ORGANISM Mitochondrion Dendrolagus goodfellowi. REFERENCE 1 (bases 1 to 1164) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE :Diprotodontia) The phylogenetic position of the musky rat kangaroo and the evolution of bipedal hopping in kangaroos (Macropodidae JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1164) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE Direct Submission JOURNAL Submitted (02-OCT-1997) Biology, University of California, 1354 Spieth, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF027990 BASE COUNT 352 a 208 c 173 g 215 t 4265 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUG-UUAAUU -G-UAGU-UA |GG-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCUGCCCGGU GAGAA---UG C|CCU-CAAA --au-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------a aa---)---- 1261 ---------- ---------- --ua--aau- uauCAGGAGC |--------- cGGUAUCA-- 1321 -GGCACACU- -----(--ac a--------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UAA C|ACCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AC UAAUAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-AUCA-U- AA-CUAacua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAG A-------CA AACGGC|GUA AAGCGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------uua -aaca-u-ac aauaaa--gc -----|UAAG AUCUAA-CUU ----AGCA(G 2341 UAAUA)CGCU CU-------A GUUA-AUAUC AAA------- ----auacau -aAC(-CAAA 2401 -)GU|a---- ----gcuuua acua------ -u-------- gcu-gaacAC ACUAC-AGCU 2461 A-AGG---GA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCA 2521 A--GAUA-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(caac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -CAAC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCCCACC UUUUCUUGCC ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU AAC-|CCC(A --AUA)GGG- -----(aua- 3181 aa-)------ A-AGUAAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-AA-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a gu---)---- ---------- ---------- UAG-AAcaca 4021 ---------- ------ACGA --ACUAU-CU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAuc--) U-GA-GcaAU -A--CGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGAG-CG- CGUACACA-C -CGCCCGUCG C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< --gauaaaa- 4381 uucua-caaa uaaauaau-a agauaagaca uaaa-a---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGAAUA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.D.veter 5213 bp RNA RNA 06-NOV-1997 DEFINITION Mitochondrion Dorcopsis veterum.; . ACCESSION AF0279 5 KEYWORDS . SOURCE Mitochondrion Dorcopsis veterum. ORGANISM Mitochondrion Dorcopsis veterum. REFERENCE 1 (bases 1 to 1165) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE :Diprotodontia) The phylogenetic position of the musky rat kangaroo and the evolution of bipedal hopping in kangaroos (Macropodidae JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1165) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE Direct Submission JOURNAL Submitted (02-OCT-1997) Biology, University of California, 1354 Spieth, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF027995 BASE COUNT 351 a 212 c 170 g 217 t 4263 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUG-UUAAUU -A-UAAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCUGUCCGGU GAGAA---UG C|CCU-CAAA --au-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------a aa---)---- 1261 ---------- ---------- --ua--aau- caaCAGGAGC |--------- gGGUAUCA-- 1321 -GGCACACU- -----(-uau a--------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UGA C|GCCUU-GC --|------- (-uug--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AC UAAUAUUAAG C-UAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UUAauuc a--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-ACAG A-------CA AACGGC|GUA AAGCGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------cga -a-ucu-cac aauaaa--gc -----|UAAG AUCUAA-CUA ----AACU(G 2341 UAAUA)CGCC CU-------A GUUA-ACGUC AAA------- ----auacau -aAC(-CAAA 2401 -)GU|a---- ----gcuuua auca------ -u-------- gcu-gaacAC ACUAC-AGCU 2461 A-AGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCA 2521 A--GAUA-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- cca(uaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -CAGC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCCCACC UUUUCUUGCC ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU AAC-|CCC(A --ACA)GGG- -----(aua- 3181 aa-)------ A-AGUAAGCA AAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaccc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-AA-GG- GA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a gc---)---- ---------- ---------- UAG-AAcaua 4021 ---------- ------ACGA --AUUAU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAuc--) U-AA-GcaAU -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUGGGA-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< --gacaaaa- 4381 cuuua-caaa uaacuaau-a aaaaaaaaua caaa-a---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAACA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.D.vanhe 5213 bp RNA RNA 06-NOV-1997 DEFINITION Mitochondrion Dorcopsulus vanheurni.; . ACCESSION AF0279 4 KEYWORDS . SOURCE Mitochondrion Dorcopsulus vanheurni. ORGANISM Mitochondrion Dorcopsulus vanheurni. REFERENCE 1 (bases 1 to 1163) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE :Diprotodontia) The phylogenetic position of the musky rat kangaroo and the evolution of bipedal hopping in kangaroos (Macropodidae JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1163) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE Direct Submission JOURNAL Submitted (02-OCT-1997) Biology, University of California, 1354 Spieth, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF027994 BASE COUNT 349 a 215 c 171 g 213 t 4265 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUG-UUAAUU -G-UAAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCUGUCCAGU GAGAA---UG C|CCU-CAAA --au-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------a ag---)---- 1261 ---------- ---------- --ca--aau- uaaCAGGAGC |--------- gGGUAUCA-- 1321 -GGCACACU- -----(--au a--------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--CGA C|GCCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AC UAAUAUUAAG C-UAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UUAaucu a--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-ACAG A-------CA AACGGC|GUA AACGGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------caa -a-ucc-cac aauaaa--gc -----|UAAG AUCUAA-CUA ----AACU(G 2341 UAAUA)CGCC CU-------A GUUA-ACGUC AAA------- ----auacau -aAC(-CAAA 2401 -)GU|a---- ----gcuuua acca------ -u-------- gcu-gaacAC ACUAC-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCA 2521 A--GAUA-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- caa(uaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -CAgC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCCCACC UCUUCUUGCC ---------- ---------- 2881 (-------au ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU AAC-|CCC(A --ACA)GGG- -----(aua- 3181 aa-)------ A-AGUUAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caacc- 3781 ---------G UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-GA-GG- AA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a au---)---- ---------- ---------- UAG-AAcaca 4021 ---------- ------ACGG --AUUAU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAcc--) U-GA-GuaAU -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUGGGA-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< --gacaaaa- 4381 cuuua-caaa uaacuaau-a aaa-aaaaua caaa-a---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAACA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.L.hirsu 5213 bp RNA RNA 06-NOV-1997 DEFINITION Mitochondrion Lagorchestes hirsutus.; . ACCESSION AF0279 6 KEYWORDS . SOURCE Mitochondrion Lagorchestes hirsutus. ORGANISM Mitochondrion Lagorchestes hirsutus. REFERENCE 1 (bases 1 to 1166) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE :Diprotodontia) The phylogenetic position of the musky rat kangaroo and the evolution of bipedal hopping in kangaroos (Macropodidae JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1166) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE Direct Submission JOURNAL Submitted (02-OCT-1997) Biology, University of California, 1354 Spieth, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF027996 BASE COUNT 358 a 207 c 169 g 217 t 4262 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUG-UUAAUU -G-UAGU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCUGUCCAGU GAGAA---UG C|CCU-CAAA --au-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------a aau--)---- 1261 ---------- ---------- --ca--aau- uaaCAGGAGC |--------- gGGUAUCA-- 1321 -GGCACACU- -----(--au a--------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UGA C|GCCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AC UAAUAUUAAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-CUAauaa ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-ACAG A-------CA AACGGC|GUA AAGCGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------uag -aaca-u-ac aauaaa--gc -----|UAAG ACUUAA-CUA ----AACU(G 2341 UAAUA)CGCU CU-------A GUUA-ACAUC AAA------- ----auacau -aAC(-CAAA 2401 -)GU|a---- ----gcuuua auua------ -u-------- gcu-gaacAC ACUAC-AGCU 2461 A-AGA---GA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCA 2521 A--GAUA-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(uaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -CAAC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCCCACC UUUUCUUGCC ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU AAC-|CCC(A --ACA)GGG- -----(aua- 3181 aa-)------ A-AGUAAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-AA-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a gc---)---- ---------- ---------- UAG-AAaaca 4021 ---------- ------ACGA --AUUAU-CU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAuc--) U-GA-GcaAU -A--UGAAG- -GCGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGGG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aacaaaaaau 4381 cuuau-aa-a uaacuaau-a agccaaaaua uaaa-a---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAACA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.Macp.gi 5213 bp RNA RNA 11-JAN-191 DEFINITION Macropus giganteus. ACCESSION No information KEYWORDS No information. SOURCE Macropus giganteus. ORGANISM Macropus giganteus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X86941 LOCUS MG12SRRNA 952 bp DNA MAM 01-SEP-1995 DEFINITION M.giganteus mitochondrial 12S rRNA gene. ACCESSION X86941 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE eastern gray kangaroo. ORGANISM Mitochondrion Macropus giganteus Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Sarcopterygii; Mammalia; Metatheria; Diprotodontia; Macropodidae; Macropus. REFERENCE 1 (bases 1 to 952) AUTHORS Douzery,E. and Catzeflis,F.M. TITLE Molecular evolution of the mitochondrial 12S rRNA in Ungulata (Mammalia) JOURNAL Unpublished REFERENCE 2 (bases 1 to 952) AUTHORS Douzery,E. TITLE Direct Submission JOURNAL Submitted (03-MAY-1995) to the EMBL/GenBank/DDBJ databases. E. Douzery, Laboratoire de Paleontologie, URA 327 CNRS, Inst.d. Sciences de l'Evolution CC064, Univ.Montpellier 2, Place E. Bataillon, F - 34095 Montpellier, FRANCE COMMENT NCBI gi: 974851 FEATURES Location/Qualifiers source 1..952 /organism="Macropus giganteus" /isolate="T727 Extr. 4667" /mitochondrion rRNA 1..952 /gene="12S rRNA" /product="12S ribosomal RNA" BASE COUNT 352 a 213 c 176 g 211 t ORIGIN BASE COUNT 352 a 213 c 176 g 211 t 4261 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -G-UAGU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCUGCCCGGU GAAAA---UG C|CCU-Gaaa --au-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----aa aacu-)---- 1261 ---------- ---------- --aa--auc- a-aCAGGAGC |--------- gGGUAUCA-- 1321 -GGCACACU- -----(caua ---------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--CAA C|GCCUU-GC --|------- (-uuu--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AC UAAUAUUAAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-CUAacua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-ACAG A-------CG AACGGC|GUA AAGGGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------uaa -aacacauac aauaaa--gc -----|UAAG AGCUAA-CUA ----AACU(G 2341 UAAUA)CGUU GU-------A GUUA-GCAUC AAA------- ----auacac -aAC(-CAAA 2401 -)CU|a---- ----gcuuua auca------ -u-------- gcu-gaagAC ACUAC-AGCU 2461 A-AGA---GA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCA 2521 A--GGUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ga(uaac)a a---A-ACUA 2701 C-U|--C|GC C-AGAG-AAC UACUAGC(-- -CAAU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- -CCUAAA-CC CACCUAGA|G GAGCCCGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCCCACC UUUUCUUGCC ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU AAC-|CCC(A --GCA)GGG- -----(aua- 3181 aa-)------ A-AGUAAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-AA-GG- AA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a au---)---- ---------- ---------- UAG-AAcaca 4021 ---------- ------ACGA --AUUAU-CU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-GA-GcaAU -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGGG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gacaaa--- 4381 ccuua-caaa uaacuaau-a aaauaaaaua caaa-a---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)GGU-GC- ACUUGGAACA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.agili 5213 bp RNA RNA 06-NOV-1997 DEFINITION Mitochondrion Macropus agilis.; . ACCESSION AF0279 6 KEYWORDS . SOURCE Mitochondrion Macropus agilis. ORGANISM Mitochondrion Macropus agilis. REFERENCE 1 (bases 1 to 1169) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE The phylogenetic position of the musky rat kangaroo and the evolution of bipedal hopping in kangaroos (Macropodidae : Diprotodontia) JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1169) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE Direct Submission JOURNAL Submitted (02-OCT-1997) Biology, University of California, 1354 Spieth, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF027986 BASE COUNT 356 a 205 c 172 g 222 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -G-UAGU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCUGUCCGGU GAGAA---UG C|CCU-CAAA --au-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------a aacu-)---- 1261 ---------- ---------- --ua--aau- caaCAGGAGC |--------- gGGUAUCA-- 1321 -GGCACACU- -----(-uau aua------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UAA C|GCCUU-GC --|------- (-uuu--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AC UAAUAUUAAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-CUAauua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-ACAG A-------CA AACGGC|GUA AAGUGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------uaa -aacauauac aauaaa--gc -----|UAAG AUCUAA-CUA ----AACU(G 2341 UAAUA)CGUU CU-------A GUUA-ACAUC AAA------- ----auauau -aAC(-CAAA 2401 -)GU|a---- ----gcuuua acug------ -u-------- gcu-gaagAC ACUAC-AGCU 2461 A-AGA---GA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCU 2521 A--GAUA-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- gaa(uaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -CAAU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCCCACC UUUUCUUGCC ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU AAC-|CCC(A --GCA)GGG- -----(aua- 3181 aa-)------ A-AGUAAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-AA-GG- GA-AGU--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a au---)---- ---------- ---------- UAG-AAaaca 4021 ---------- ------ACGA --AUUAU-CU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAcc--) U-GA-GcaAU -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AAA--GGCA 4261 AUAGGG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< --aacaaaa- 4381 cuaua-uaaa uaacuaau-a aaauacaaca caaa-a---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAACA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.robus 5213 bp RNA RNA 24-FEB-1997 DEFINITION Mitochondrion Macropus robustus.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase 6 gene; ATPase 8 gene; ATPase subunit 6; ATPase subunit 8; COI gene; COII gene; COIII gene; cytb gene; cytochrome b; cytochrome oxidase subunit I; cytochrome oxidase subunit II; cytochrome oxidase subunit III; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 6; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH6 gene; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu(CUN); transfer RNA-Leu(UUR); transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser(AGY); transfer RNA-Ser(UCN); transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. ACCESSION Y10524 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; ATPase 6 gene; ATPase 8 gene; ATPase subunit 6; ATPase subunit 8; COI gene; COII gene; COIII gene; cytb gene; cytochrome b; cytochrome oxidase subunit I; cytochrome oxidase subunit II; cytochrome oxidase subunit III; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 6; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH6 gene; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu(CUN); transfer RNA-Leu(UUR); transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser(AGY); transfer RNA-Ser(UCN); transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Mitochondrion Macropus robustus. ORGANISM Mitochondrion Macropus robustus. REFERENCE 1 (bases 1 to 16896) AUTHORS Janke,A., Xu,X. and Arnason,U. TITLE Marsupialia and Eutheria The complete mitochondrial genome of the wallaroo (Macropus robustus) and the phylogenetic relationship among Monotremata, JOURNAL Proc. Natl. Acad. Sci. U.S.A. 94, 1276-1281 (1997) STANDARD No information REFERENCE 2 (bases 1 to 16896) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (14-JAN-1997) U. Arnason, University of Lund, Dept. of Genetics, Division of Evolutionary Systematics, Solvegatan 29, 223 62 Lund, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y10524 BASE COUNT 353 a 211 c 171 g 214 t 4264 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -G-UAGU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCUGCCCGGU GAAAA---UG C|CCU-CAAA --au-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------a aac--)---- 1261 ---------- ---------- --ua--aau- caaCAGGAGC |--------- gGGUAUCA-- 1321 -GGCACACU- -----(-uau a--------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UGA C|GCCUU-GC --|------- (-uuu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AC UAAUAUUAAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-CUAacua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-ACAG A-------CA AACGGC|GUA AAGCGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------caa -aacacacac aauaaa--gc -----|UAAG AUCUAA-CUA ----AACU(G 2341 UAAUA)CGUU AU-------A GUUA-ACAUC AAA------- ----auacau -gAC(-CAAA 2401 -)GU|a---- ----gcuuua acca------ -u-------- gcu-gaagAC ACUAC-AGCU 2461 A-AGA---GA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCU 2521 A--GAUA-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uaa(uaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -CAAU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- -CCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCCCACC UUUUCUUGCC ---------- ---------- 2881 (-------aa uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU AAC-|CCC(A --ACA)GGG- -----(aua- 3181 aa-)------ A-AGUAAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-AA-GG- UA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a au---)---- ---------- ---------- UAG-AAaaca 4021 ---------- ------ACGA --AUUAU-CU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAcu--) U-GA-GcaAU -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGGG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< --gacaaaa- 4381 ccuug-caaa uaacuaau-a aaa-auaaac acaa-a---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAACA ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.rufus 5213 bp RNA RNA 06-NOV-1997 DEFINITION Mitochondrion Macropus rufus.; . ACCESSION AF0279 5 KEYWORDS . SOURCE Mitochondrion Macropus rufus. ORGANISM Mitochondrion Macropus rufus. REFERENCE 1 (bases 1 to 1167) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE evolution of bipedal hopping in kangaroos (Macropodidae : Diprotodontia) The phylogenetic position of the musky rat kangaroo and the JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1167) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE Direct Submission JOURNAL Submitted (02-OCT-1997) Biology, University of California, 1354 Spieth, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF027985 BASE COUNT 357 a 207 c 171 g 217 t 4261 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUG-UUAAUU -G-UAGU-UA |GA-UC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCUGUCCAGU GAAAA---UG C|CCU-CAAA --au-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------a aac--)---- 1261 ---------- ---------- --ua--aau- uaaUAGGAGC |--------- gGGUAUCA-- 1321 -GGCACACU- -----(-cac a--------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UAA C|GCCUU-GC --|------- (-uuu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AC UAAUAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUCA-U- AA-CUAacua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-ACAG A-------UA AACGGC|GUA AAACGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------uaa -aauacucac aauaaa--gc -----|UAAG AUCUAA-CUA ----AACU(G 2341 UAAUA)CGUU AU-------A GUUA-GUAUC AAA------- ----auaaau -aAC(-CAAA 2401 -)GU|a---- ----gcuuua guca------ -c-------- gcu-gaagAC ACUAC-AGCU 2461 A-AGA---GA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCC 2521 A--GAUA-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(uaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -CAGU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCCCACC UUUUCUUGCC ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU AAC-|CCC(A --AUA)GGG- -----(aua- 3181 aa-)------ A-AGUAAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-AA-GG- AA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAaaca 4021 ---------- ------ACGA --AUUAU-CU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAac--) U-GA-GcaAU -A--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACA--GGCA 4261 AUAGGG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< --gacaaaa- 4381 ccuua-caaa uaacuaau-a caacggaaua caaa-a---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAACA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.O.ungui 5213 bp RNA RNA 06-NOV-1997 DEFINITION Mitochondrion Onychogalea unguifera.; . ACCESSION AF0279 2 KEYWORDS . SOURCE Mitochondrion Onychogalea unguifera. ORGANISM Mitochondrion Onychogalea unguifera. REFERENCE 1 (bases 1 to 1167) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE :Diprotodontia) The phylogenetic position of the musky rat kangaroo and the evolution of bipedal hopping in kangaroos (Macropodidae JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1167) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE Direct Submission JOURNAL Submitted (02-OCT-1997) Biology, University of California, 1354 Spieth, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF027992 BASE COUNT 357 a 208 c 165 g 223 t 4260 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUG-UUAAUU -G-UAGU-UA |GG-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCUGUCCAGU GAGAA---UG C|CCU-CAAA --au-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--aauua aau--)---- 1261 ---------- ---------- --ua--aau- uauCAGGAGC |--------- gGGUAUCA-- 1321 -GGCACACU- -----(-aua a--------- ---------- ---------- ------)--- 1381 --UGU|---A GCCCA--CAA C|GCCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AC UAAUAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GCCA-U- AA-CUAauca ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GNU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-ACAG A-------CA AACGGC|GUA AAGCGUGUUU -A-AGU---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------uaa -aa-uuug-c aauaaa--gc -----|UAAG AUCUGA-CUA ----AACU(G 2341 UAAUA)CGCU CU-------A GUCA-AUAUC AAA------- ----auacau -aAC(-UAAA 2401 -)GU|a---- ----gcuuua auca------ -u-------- acu-gaacAC ACUAC-AGCU 2461 A-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCA 2521 A--GAUA-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- caa(uaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -UAAC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCCUACC UUUUCUUGCC ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU AAC-|CCC(A --AUA)GGG- -----(aua- 3181 aa-)------ A-AGUAAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-AA-GG- AA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a gu---)---- ---------- ---------- UAG-AAaaca 4021 ---------- ------ACGA --AUUAU-CU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAcc--) C-GA-GcaAU -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGGG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< --aacaaaa- 4381 ccuua-caaa uaacuaau-a aaauaucaca uaaa-a---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AUA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAACA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.conci 5213 bp RNA RNA 06-NOV-1997 DEFINITION Mitochondrion Peradorcas concinna.; . ACCESSION AF0279 3 KEYWORDS . SOURCE Mitochondrion Peradorcas concinna. ORGANISM Mitochondrion Peradorcas concinna. REFERENCE 1 (bases 1 to 1164) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE :Diprotodontia) The phylogenetic position of the musky rat kangaroo and the evolution of bipedal hopping in kangaroos (Macropodidae JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1164) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE Direct Submission JOURNAL Submitted (02-OCT-1997) Biology, University of California, 1354 Spieth, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF027993 BASE COUNT 357 a 209 c 169 g 213 t 4265 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGA-)U-CC U|GGCCU-UA CUG-UUAGUU -G-UAGU-UA |GA-UC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCUGUCCGGU GAGAA---UG C|CCU-CAAA --au-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------a aa---)---- 1261 ---------- ---------- --ua--aau- uaaCAGGAGC |--------- gGGUAUCA-- 1321 -GGCACACU- -----(--ac a--------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UAA C|GCCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACA----C-A 1501 GCA|GUG-AC UAAUAUUAAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-CUAacca ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-ACAG A-------CA GACGGC|GUA AAGUGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------uaa -a--acacac aauaaa--gc -----|UAAG AUCUAA-CUA ----AACU(G 2341 UAAUA)CGUU CU-------A GUUA-ACAUC AAA------- ----auacau -aAC(-CAAA 2401 -)GU|a---- ----gcuuua auca------ -u-------- gcu-gaacAC ACUAC-AGCU 2461 A-AGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCA 2521 A--GAUA-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(uaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -CAAC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCCUACC UUUUCUUGCC ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU AAC-|CCC(A --ACA)GGG- -----(aua- 3181 aa-)------ A-AGUAAGCA AAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-AA-GG- AA-AGU--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a au---)---- ---------- ---------- UAG-AAcaua 4021 ---------- ------ACGA --AUUAU-CU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAuc--) U-GA-GcaAU -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGGG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< --gacaaaa- 4381 cccca-aaaa uaacuaau-a agauaaaaca caaa-a---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAACA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.Po.long 5213 bp RNA RNA 06-NOV-1997 DEFINITION Mitochondrion Potorous longipes.; . ACCESSION AF0280 0 KEYWORDS . SOURCE Mitochondrion Potorous longipes. ORGANISM Mitochondrion Potorous longipes. REFERENCE 1 (bases 1 to 1161) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE The phylogenetic position of the musky rat kangaroo and the evolution of bipedal hopping in kangaroos (Macropodidae : Diprotodontia) JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1161) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE Direct Submission JOURNAL Submitted (02-OCT-1997) Biology, University of California, 1354 Spieth, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF028000 BASE COUNT 354 a 208 c 166 g 220 t 4265 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUG-UUAAUU -G-UAAU-UA |GA-UC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCUAUCCGGU GAGAA---UG C|CCU-AAAG --au-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------a aa---)---- 1261 ---------- ---------- --cu--aau- caaCAGGAGC |--------- gGGUAUCA-- 1321 -GGCACACU- -----(--aa a--------- ---------- ---------- ------)--- 1381 --CGU|---A GCCCA--uaA C|GCCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AC UAACAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UUAauca ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCU-- 1981 AAUUA-ACAG A-------CA GACGGC|GUA AAGCGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------cua -aa---acac aauaaa--gc -----|UAAG AUCUAA-CUA ----AACU(G 2341 UAAUA)CGUU AU-------A GUUA-ACAUC AAA------- ----auacau -gAC(-UAAA 2401 -)GU|a---- ----gcuuua accu------ -u-------- gcu-gaauAC ACUAA-AGCU 2461 A-AGA---GA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CUA 2521 A--GAUA-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(uaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -UAUU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC UUUUCUUGCC ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU AAC-|CCC(A --ACA)GGG- -----(aua- 3181 aa-)------ A-AGUAAGCA AGA-CUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUC|ACA UAU------- ---------G 3841 A-A-AA-GG- GA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ac---)---- ---------- ---------- UAG-AAcacu 4021 ---------- -----cACGA --ACUAU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-c-) U-AA-GaaAU -A--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACA--GGCA 4261 AUAGGG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aacucaaca- 4381 -c-ca-acaa uaacuaau-a aaauacucaa caaa-a---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GU- ACUUGGACGA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.brach 5213 bp RNA RNA 06-NOV-1997 DEFINITION Mitochondrion Setonix brachyurus.; . ACCESSION AF0279 8 KEYWORDS . SOURCE Mitochondrion Setonix brachyurus. ORGANISM Mitochondrion Setonix brachyurus. REFERENCE 1 (bases 1 to 1163) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE The phylogenetic position of the musky rat kangaroo and the evolution of bipedal hopping in kangaroos (Macropodidae : Diprotodontia) JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1163) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE Direct Submission JOURNAL Submitted (02-OCT-1997) Biology, University of California, 1354 Spieth, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF027988 BASE COUNT 355 a 211 c 170 g 212 t 4265 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUG-UUAAUU -G-UAGU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCUGCCCGGU GAGAA---UG C|CCU-CAAA --au-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------a aa---)---- 1261 ---------- ---------- --ua--aau- uaaCAGGAGC |--------- gGGUAUCA-- 1321 -GGCACACU- -----(--au c--------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UGA C|GCCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AC UAAUAUUAAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-CUAauca ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-ACAG A-------CA AACGGC|GUA AAGCGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------uaa -aa-uaaau- aauaaa--gc -----|UAAG ACCUAA-CUA ----AACU(G 2341 UAAUA)CGCU CU-------A GUUA-ACAUC AAA------- ----auacau -aAC(-CAAA 2401 -)GU|a---- ----gcuuua accg------ -u-------- gcu-gaacAC ACUAC-AGCU 2461 A-AGA---GA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCA 2521 A--GAUA-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(caac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -CAAC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCCCACC UUUUCUUGCC ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU AAC-|CCC(A --AUA)GGG- -----(aua- 3181 aa-)------ A-AGUAAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaauc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-AA-GG- AA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a gc---)---- ---------- ---------- UAG-AAaaca 4021 ---------- ------ACGG --AUUAU-CU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAcc--) U-GA-GcuAU -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGGG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< --aacaaaa- 4381 uccca-caua uaacuaauaa aac-aaagca uaaa-a---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAACA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.stigm 5213 bp RNA RNA 06-NOV-1997 DEFINITION Mitochondrion Thylogale stigmatica.; . ACCESSION AF0279 1 KEYWORDS . SOURCE Mitochondrion Thylogale stigmatica. ORGANISM Mitochondrion Thylogale stigmatica. REFERENCE 1 (bases 1 to 1160) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE :Diprotodontia) The phylogenetic position of the musky rat kangaroo and the evolution of bipedal hopping in kangaroos (Macropodidae JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1160) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE Direct Submission JOURNAL Submitted (02-OCT-1997) Biology, University of California, 1354 Spieth, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF027991 BASE COUNT 357 a 210 c 168 g 213 t 4265 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAAUU -G-UAGU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCUGCCCGGU GAGAA---UG C|CCU-CAAA --au-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------a aa---)---- 1261 ---------- ---------- --ca--aau- uaaCAGGAGC |--------- gGGUAUCA-- 1321 -GGCACACU- -----(--ac a--------- ---------- ---------- ------)--- 1381 --UGU|---A GCCCA--CAA C|GCCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AC UAAUAUUAAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-CUAauua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-ACAG A-------CA AACGGC|GUA AAGCGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------uaa -aac-c-cac aauaaa--gc -----|UAAG AUUUAA-CUA ----AACU(G 2341 UAAUA)CGCU CU-------A GUUU-AUAUC AAA------- ----auauau -aAC(-CAAA 2401 -)GU|a---- ----gcuuua aucc------ -u-------- gcu-gaacAC ACUAA-AGCU 2461 A-AGA---GA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCA 2521 A--GAUA-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(uaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -CAAC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCCCACC UUUUCUUGCC ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU AAC-|CCC(A --ACA)GGG- -----(aua- 3181 aa-)------ A-AGUAAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caauc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-AA-GG- AA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a gc---)---- ---------- ---------- UAG-AAaaca 4021 ---------- ------ACGA --AUUAU-CU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAcc--) U-GA-GcaAU -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGGG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< --gacaaaa- 4381 ccuua-aaaa uaacuaau-a aaacaaaaca caaa-a---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAACA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.W.bicol 5213 bp RNA RNA 06-NOV-1997 DEFINITION Mitochondrion Wallabia bicolor.; . ACCESSION AF0279 7 KEYWORDS . SOURCE Mitochondrion Wallabia bicolor. ORGANISM Mitochondrion Wallabia bicolor. REFERENCE 1 (bases 1 to 1164) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE :Diprotodontia) The phylogenetic position of the musky rat kangaroo and the evolution of bipedal hopping in kangaroos (Macropodidae JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1164) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE Direct Submission JOURNAL Submitted (02-OCT-1997) Biology, University of California, 1354 Spieth, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF027987 BASE COUNT 353 a 216 c 172 g 208 t 4264 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUG-UUAGUU -G-UAGU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCUGUCCGGU GAGAA---UG C|CCU-CAAA --au-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------a aac--)---- 1261 ---------- ---------- --ua--aau- uuaCAGGAGC |--------- gGGUAUCA-- 1321 -GGCACACC- -----(--au g--------- ---------- ---------- ------)--- 1381 --CGU|---A GCCCA--UGA C|GCCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AC UAAUAUUAAG C-UAUAAAC( ---------- ----GAAA)G UUCGA-CUA| 1561 A|-AUCA-U- AA-CUAauua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-ACAG A-------CA GACGGC|GUA AAGCGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------uaa -a--acacac aauaaa--gc -----|UAAG AUCUAA-CUA ----AACU(G 2341 UAAUA)CGCU CU-------A GUUA-ACAUC AAA------- ----auacau -aAC(-CAAA 2401 -)GU|a---- ----gcuuua acca------ -u-------- gcu-gaacAC ACUAC-AGCU 2461 A-AGA---GA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCA 2521 A--GAUA-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(caac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -CAAC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC UUUUCUUGCC ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU AAC-|CCC(A --ACA)GGG- -----(aca- 3181 aa-)------ A-AGUAAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-AA-GG- AA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a gu---)---- ---------- ---------- UAG-AAaaca 4021 ---------- ------ACGA --ACUAU-CU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAcc--) U-GA-GcaAU -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGGG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< --gacaaaa- 4381 cauua-caaa uaacuaau-a aaauaaaaca caaa-a---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAACA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.orien 5213 bp RNA RNA 11-JAN-191 DEFINITION Phalanger orientalis. ACCESSION No information KEYWORDS No information. SOURCE Phalanger orientalis. ORGANISM Phalanger orientalis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U33496 LOCUS PHU33496 950 bp DNA MAM 16-NOV-1995 DEFINITION Phalanger orientalis 12S rRNA gene, mitochondrial gene encoding mitochondrial rRNA, complete sequence. ACCESSION U33496 KEYWORDS . SOURCE gray cuscus. ORGANISM Mitochondrion Phalanger orientalis Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Sarcopterygii; Mammalia; Metatheria; Diprotodontia; Phalangeridae; Phalanger. REFERENCE 1 (bases 1 to 950) AUTHORS Springer,M.S., Hollar,L.J. and Burk,A. TITLE Compensatory substitutions and the evolution of the mitochondrial 12S rRNA gene in mammals JOURNAL Mol. Biol. Evol. 12 (1995) In press REFERENCE 2 (bases 1 to 950) AUTHORS Burk,A. TITLE Direct Submission JOURNAL Submitted (09-AUG-1995) Angela Burk, University of California, Biology, Riverside, CA 92521, USA COMMENT NCBI gi: 1065405 FEATURES Location/Qualifiers source 1..950 /mitochondrion /organism="Phalanger orientalis" rRNA 1..950 /product="12S rRNA" BASE COUNT 363 a 219 c 161 g 207 t ORIGIN BASE COUNT 363 a 219 c 161 g 207 t 4263 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUG-UUAAUU -A-UAAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCUACCCAGU GAGAA---UG C|CCU-CAAA --gu-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----uc ua---)---- 1261 ---------- ---------- --aa--aca- a-uCAGGAGC |--------- aGGUAUCA-- 1321 -GGUACACU- -----(cua- ---------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UCA C|ACCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG ACA----C-A 1501 GCA|GUG-AC UAACAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-C- AA-UUAuuua a--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -GAC-CCA-- 1981 AAUUA-ACAG A-------AA ACCGGC|GUA AAGUGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------a -cucaccacc aauaaa--gc -----|UAAA ACCUAA-CUA ----AACU(G 2341 UAAUA)CGCU AU-------A GUUA-GAAUU AAA------- ----auaaac -aAC(-AAAA 2401 -)GU|g---- ----gcuuua accc------ -c-------- gcu-gaagAC ACGAA-AGCU 2461 A-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CCUAAA-CCA 2521 A--GACA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(uaac)a a---A-AUUA 2701 U-C|--C|GC C-AGAG-AAC UACUAGC(-- -CAAC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- UCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCCCACC UAUUCUUGCC ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CC UAC-|CCC(A --CAG)GGC- -----(aac- 3181 a--)------ A-AGUAAGCA AAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-UA-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a gc---)---- ---------- ---------- UAG-AAaaua 4021 ---------- -----aACGA --ACUAU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) UcAA-G--AU -Au-AGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGGA-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aauuauaa- 4381 ccaaa-ua-a uaacuaaua- aaacuuuaac aaaa-a---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAAUA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.vulpe 5213 bp RNA RNA 27-NOV-1997 DEFINITION Mitochondrion Trichosurus vulpecula.; . ACCESSION AF0318 3 KEYWORDS . SOURCE Mitochondrion Trichosurus vulpecula. ORGANISM Mitochondrion Trichosurus vulpecula. REFERENCE 1 (bases 1 to 1158) AUTHORS Douzery,E. and Catzeflis,F.M. Springer,M.S., Burk,A., Metcalf,A., Cleven,G.C., Lavergne,A., TITLE evidence for rate acceleration in proboscideans Rates of 12S rRNA nucleotide substitution in mammals with JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1158) AUTHORS Springer,M.S., Burk,A., Metcalf,A., Cleven,G.C., Lavergne, A., Douzery,E. and Catzeflis,F.M. TITLE Direct Submission JOURNAL Submitted (29-OCT-1997) Biology, University of California, 1354 Spieth, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF031823 BASE COUNT 355 a 215 c 168 g 209 t 4266 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUG-UUAAUU -A-UAAU-UA |AA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCUGCCCAGU GAGAA---UG C|CCU-Caaa --au-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------u ucau-)---- 1261 ---------- ---------- --aa--auc- a-aCAGGAGC |--------- aGGCAUCA-- 1321 -GGCACACC- -----(-aca ---------- ---------- ---------- ------)--- 1381 --GGU|---A GCCCA--CCA C|GCCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AC UAACAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UUAuu-- a--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-ACAG A-------AA ACCGGC|GUA AAGUGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------a--- -cuaacaacc aauaaa--gc -----|UAAA AUUCAA-CUA ----AACU(G 2341 UAAUA)CGCU AU-------A GUUG-ACACU AAA------- ----auacac -aAC(-GAAA 2401 -)GU|g---- ----gcuuua ucua------ -c-------- gcu-gaagAC ACUAU-AGCU 2461 A-AGA---AA CAAACUGGG( AUUAGAGAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCA 2521 A--GAUA-AU |C-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- caa(uaac)a a---U-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -CAGC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC CAUUCUUGCC ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU UAC-|CCC(A --UAG)GGA- -----(aaa- 3181 a--)------ A-AGUAAGCA GGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aaauc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-UG-GG- AA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a au---)---- ---------- ---------- UAG-AAuaua 4021 ---------- ------ACGA --ACUAC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAcc--) U-AA-G--AU -Ac-UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGGA-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aauuaaaa- 4381 cccaa-aaca uaaauaau-a aaacucagac aaaa-a---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)GGU-GC- ACUUGGAGUA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.ciner 5213 bp RNA RNA 02-SEP-1996 DEFINITION Mitochondrion Phascolarctos cinereus.; . ACCESSION U61076 KEYWORDS . SOURCE Mitochondrion Phascolarctos cinereus. ORGANISM Mitochondrion Phascolarctos cinereus. REFERENCE 1 (bases 1 to 1020) AUTHORS Springer,M.S. and Douzery,E. TITLE mitochondrial 12S rRNA molecules Secondary structure and patterns of evolution among mammalian JOURNAL J. Mol. Evol. 43 (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 1020) AUTHORS Springer,M.S. TITLE Direct Submission JOURNAL Submitted (17-JUN-1996) University of California, Biology, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U61076 BASE COUNT 352 a 218 c 167 g 215 t 4261 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGA-)U-CC U|AGCCU-UA CUG-UUAGUU -U-UAAU-UA |AA-CU--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAACCCAGU GAGAA---UG C|CCC-CAAA ---auuu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----au aca--)---- 1261 ---------- ---------- --ca--auu- uagCAGGAGC |--------- aGACAUCA-- 1321 -GGUUCACU- -----(-aca a--------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UAA C|GUCUU-GU --|------- (-cca--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AU UAACAUUAAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUUA-U- AA-UUAucu- a--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGC-CA)-U ACGAUU|--- -GAC-CCA-- 1981 AACUA-ACAG A--------U GUCGGC|GUA AAGCGUGUAC -A-AUC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------ca -acaacca-a aauaag--gc -----|UAAA acUCAA-UCA ----uGCU(G 2341 UAAUA)CGCU AU-------A GCUA-ACAUU AAA------- ----aaaugc -aAC(-CAAA 2401 -)GU|g---- ----gccuua auac------ -u-------- gac-caaaAC ACGAC-AGCU 2461 A-AGA---CU CAAACUGGG( AUUAGAUAC) CCCA-UUAU| -GCUU-UAG- CGUAAA-CUU 2521 A--GAUA-GU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uaa(uaac)g a---A-ACUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -CAGC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|ACGGUG- UCCUAAG-CC CAUCUAGA|G GAGCCUGU-C |CUAUA--AC CG(AUGAACC 2821 C--------- ----)CGAUA C-ACCCCACC UCUUCUUGCC ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CC UAC-|CCC(A --AUA)GGG- -----(acc- 3181 aa-)------ A-AGUAAGCA AAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-GA-GG- AA-AGU--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ca---)---- ---------- ---------- UAG-AAaauu 4021 ---------- ------ACGG --ACUAU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) U-AA-GauAU -A--CGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACA--GGCA 4261 AUAGGA-CG- CGUACACA-C -CGCCCGUCA C-UCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aacauaaa- 4381 caaac-caaa uaacuaau-a aaauaaauaa auaa-a---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAAG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGGAUCA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.penic 5213 bp RNA RNA 06-NOV-1997 DEFINITION Mitochondrion Bettongia penicillata.; . ACCESSION AF0279 8 KEYWORDS . SOURCE Mitochondrion Bettongia penicillata. ORGANISM Mitochondrion Bettongia penicillata. REFERENCE 1 (bases 1 to 1161) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE :Diprotodontia) The phylogenetic position of the musky rat kangaroo and the evolution of bipedal hopping in kangaroos (Macropodidae JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1161) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE Direct Submission JOURNAL Submitted (02-OCT-1997) Biology, University of California, 1354 Spieth, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF027998 BASE COUNT 362 a 203 c 163 g 221 t 4264 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUG-UUAGUU -A-UAAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAAUCCGGU GAAAA---UG C|CCU-AAAG --au-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------a aa---)---- 1261 ---------- ---------- --ua--aau- caaCAGGAGC |--------- uGGUAUCA-- 1321 -GGCACACU- -----(-aau ---------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UAA C|ACCUU-GC --|------- (-uaa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AC UAAUAUUAAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UUAacua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -GAC-CCG-- 1981 AAUUA-ACAG A-------UU UACGGC|GUA AAGCGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------caa -aa-ac-cac aauaaa--gc -----|UAAA AUUUAA-CUA ----AACU(G 2341 UAAUA)CGCU CG-------A GUUA-ACAUA AAA------- ----auacau -aAC(-GAAA 2401 -)GU|a---- ----gcuuua acuu------ -u-------- gcu-gaauAC ACUAC-AGCU 2461 A-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CCA 2521 A--GAUA-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a auu(aaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -CAAU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUCACC UUUUCUUGCC ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU AAC-|CCC(A --ACA)GGG- -----(aua- 3181 aa-)------ A-AGUAAGCA AGA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-AA-GG- AA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ac---)---- ---------- ---------- UAG-AAcauc 4021 ---------- ------ACGA --AUUAU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAcu--) U-AA-GuaAU -A--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AAA--GGCA 4261 AUAGGG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< --aacccac- 4381 aucau-cuaa uaaauaauau auucaaaacc a-aa-a---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC ACGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAACA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.H.mosch 5213 bp RNA RNA 06-NOV-1997 DEFINITION Mitochondrion Hypsiprymnodon moschatus.; . ACCESSION AF0279 7 KEYWORDS . SOURCE Mitochondrion Hypsiprymnodon moschatus. ORGANISM Mitochondrion Hypsiprymnodon moschatus. REFERENCE 1 (bases 1 to 1169) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE :Diprotodontia) The phylogenetic position of the musky rat kangaroo and the evolution of bipedal hopping in kangaroos (Macropodidae JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1169) AUTHORS Burk,A., Westerman,M. and Springer,M. TITLE Direct Submission JOURNAL Submitted (02-OCT-1997) Biology, University of California, 1354 Spieth, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF027997 BASE COUNT 343 a 224 c 182 g 207 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --cauAGGUU 661 (UGG-)U-CC U|GGCCC-UA CUG-UUAAUU -G-UAAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGC----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCAAUCCGGU GAGAUa--UG C|CCU-ACAG --au-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---cuua cca--)---- 1261 ---------- ---------- --ua--auc- guuAAGGAGC |--------- gGGCAUCA-- 1321 -GGCACACC- -----(--ac a--------- ---------- ---------- ------)--- 1381 --GGU|---A GCCCA--UCA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AC UAAUAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UUAaauc a--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCGCC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AGUUA-ACAG A-------AA ACCGGC|GUA AAGCGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------aca -aaccuaca- aauaaa--gc -----|UAAG ACGCAA-CUA ----AGCU(G 2341 UAAUA)CGCU AU-------A GUCA-ACAUU AAA------- ----auacac -uAC(-AAAA 2401 -)GU|g---- ----gcuuua auac------ -c-------- gcu-gaagAC ACGAC-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- UUUAAA-CCA 2521 A--GAUA-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(caac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AAUC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- UCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 A--------- ----)CGAUA C-ACCUCACC CCUUCUUGCC ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU GGC-|CCC(A A-CAC)GGG- -----(uaa- 3181 ua-)------ A-AG-CAGCA AGA-UUAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ucaacc- 3781 ---------G UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-GG-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a au---)---- ---------- ---------- UAG-AAca-a 4021 ---------- ------ACGA --AUUAU-CU u-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAcc--) U-AA-GacAU -A--UGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACA--GGCA 4261 AUAGGA-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< --gauaaaa- 4381 cugga-uaaa uaacuaauaa cuccgagcac aaaa-a---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAACA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.V.ursin 5213 bp RNA RNA 02-SEP-1996 DEFINITION Mitochondrion Vombatus ursinus.; . ACCESSION U61078 KEYWORDS . SOURCE Mitochondrion Vombatus ursinus. ORGANISM Mitochondrion Vombatus ursinus. REFERENCE 1 (bases 1 to 1027) AUTHORS Springer,M.S. and Douzery,E. TITLE Secondary structure and patterns of evolution among mammalian mitochondrial 12S rRNA molecules JOURNAL J. Mol. Evol. 43 (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 1027) AUTHORS Springer,M.S. TITLE Direct Submission JOURNAL Submitted (17-JUN-1996) University of California, Biology, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U61078 BASE COUNT 339 a 225 c 173 g 221 t 4255 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUG-UUAAUU -U-UAAU-UA |AG-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCUGCCCAGU GAGAA---UG C|CCU-CAAA --au-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----uac aau--)---- 1261 ---------- ---------- --cg--aau- caaCAGGAGC |--------- aGGUAUCA-- 1321 -GGCACACC- -----(-cau ccc------- ---------- ---------- ------)--- 1381 --GGU|---A GCCCA--UAA C|ACCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AC UAACUUUAAG A-UAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUUA-U- AA-UUAu-ac a--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCGCC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-ACAG A-------AC ACCGGC|GUA AAGCGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------gcaa -aucucaa-- aauaaa--gu -----|UAAU ACUUAA-CUA ----AACU(G 2341 UAAUA)CGCC CU-------A GUUA-ACAUU AAA------- ----auaaac -aAC(-UAAA 2401 -)GU|g---- ----acuuua auuu------ -c-------- gcu-gaauAC ACGAC-AACU 2461 A-AGA---CU CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGU- CAUAAA-CCU 2521 A--GGUA-AU |C-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- cga(uaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -CACC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC CCUUCUUGCC ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --AUA)GGG- -----(aac- 3181 aa-)------ A-AGUGGGCA AAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ucacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-GG-GG- GA-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a au---)---- ---------- ---------- UAG-AAaacc 4021 ---------- -----aACGA --ACUAU-CU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAccc-) U-GA-GucAU -A--CGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGAG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aacacaaa- 4381 ccguc-acau uaacuaau-a aguuauccaa aaaa-a---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)GGU-GC- ACUUGGAGUA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (18)-Met.2 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.D.gliro 5213 bp RNA RNA 02-SEP-1996 DEFINITION Mitochondrion Dromiciops gliroides.; . ACCESSION U61073 KEYWORDS . SOURCE Mitochondrion Dromiciops gliroides. ORGANISM Mitochondrion Dromiciops gliroides. REFERENCE 1 (bases 1 to 1023) AUTHORS Springer,M.S. and Douzery,E. TITLE Secondary structure and patterns of evolution among mammalian mitochondrial 12S rRNA molecules JOURNAL J. Mol. Evol. 43 (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 1023) AUTHORS Springer,M.S. TITLE Direct Submission JOURNAL Submitted (17-JUN-1996) University of California, Biology, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U61073 BASE COUNT 348 a 213 c 173 g 220 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCU-UA CUG-UUAAUU -C-UAAU-UA |GA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCUAACCGGU GAGAA---UG C|CCU-Uaaa --aa-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----au auaa-)---- 1261 ---------- ---------- --ag--uua- --aAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACACC- -----(-ccc ug-------- ---------- ---------- ------)--- 1381 --GGU|---A GCCCA--UUA C|ACCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AC UAACAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUG| 1561 A|-GUCA-U- AA-UUU-a-g c-a------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-ACAG A-------cc accGGC|GUA AAGcGUGUUU -A-AGU---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------aca -auau-ucu- aauaaa--gu -----|UAAA ACCUAA-CUA ----AGCU(G 2341 UAAAA)CGUU AU-------A GUUA-AUAUC AAA------- ----auaugc -aAC(-UAAA 2401 -)GU|g---- ----acuuua aucu------ -a-------c acu-gaacAC ACGAU-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCC 2521 A--AAUA-GU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aaa(aaac)a a---A-ACUA 2701 U-U|--C|GC C-AGGG-AAC UACUAGC(-- -UAAU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCCCACC UCUUCUUGCC ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --AUA)GGG- -----(acc- 3181 ca-)------ A-AGUAGGCA AAA-CUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---aaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-GA-GG- GA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ac---)---- ---------- ---------- UAG-AAcaua 4021 ---------- ------ACGA --AUGGC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-c-) U-AA-G--AC -C--UGAAG- -GAGGAUUUA 4141 A-U--AGUAA A-UUAGGA(- guaga-ga-- --)GCCUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGGG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gauuauau- 4381 aaacu-aaau aaauaaugaa auuaauacau aauaaa---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAAUA -C-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.N.typhl 5213 bp RNA RNA 02-SEP-1996 DEFINITION Mitochondrion Notoryctes typhlops.; . ACCESSION U61075 KEYWORDS . SOURCE Mitochondrion Notoryctes typhlops. ORGANISM Mitochondrion Notoryctes typhlops. REFERENCE 1 (bases 1 to 1021) AUTHORS Springer,M.S. and Douzery,E. TITLE mitochondrial 12S rRNA molecules Secondary structure and patterns of evolution among mammalian JOURNAL J. Mol. Evol. 43 (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 1021) AUTHORS Springer,M.S. TITLE Direct Submission JOURNAL Submitted (17-JUN-1996) University of California, Biology, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U61075 BASE COUNT 325 a 215 c 192 g 220 t 4261 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCU-UA UUA-UUAAUU -A-UUGC-UA |GU-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCUGUCCGGU GAGAc--aUG C|CCU-Gaga --gc-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-uaaauu uuuuu)---- 1261 ---------- ---------- --aa--gcc- u-aCAGGAGU |--------- uGGUAUCA-- 1321 -GGCACGC-- -----(-uua au-------- ---------- ---------- ------)--- 1381 ---GC|---G GCCCA--UGA C|ACCUU-GC --|------- (-uaa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( UACG-)--GG UUG----C-A 1501 GCA|GUG-AC UAACCUUGGG C-CAUAAAC( ---------- ----GAAA)G UUCGA-CCA| 1561 G|-GCCA-U- AG-UAA-uua -c-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AGC-CCA-- 1981 AAUUA-AUGA U-------CA AACGGC|GUA AAGCGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------ucu -auca--a-c aauaaa--gu -----|UAAU ACUaGA-CUA ----GACU(G 2341 UAAAA)CGUA AC-------A GUCa-GGUAU AAG------- ----guacac -gAC(-UAAA 2401 -)GU|g---- ----acuuua gcac------ -a-------- gcu-gaacAC ACUAC-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-CCU 2521 A--GAUA-GC |C-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uau(aaac)a a---G-ACUA 2701 U-U|--C|GC C-AGAG-AAC UACAAGC(-- -GAGC--)GC UUA--AAACU CAAAAGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA A-ACCUUACC UUUUCUUGCC ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CC UAC-|CCC(A --GUA)GAG- -----(aaa- 3181 aa-)------ G-AGUAGGCG UAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA GAU------- ---------G 3841 A-A-AA-GG- CA-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a uu---)---- ---------- ---------- UAG-AA-gac 4021 ---------- ------ACGG --AUUAU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-c-) U-AA-G--AU -A--UUAAG- -GAGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- auaga-ga-- --)GCCUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACA--GGCG 4261 AUAGGG-CG- CGCACACA-C -CGCCCGUCA C-UCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aauaagcac- 4381 u-caa-a-uu uaaauaaaac aaa-uagaca auaaa----- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGAAUA -C-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.fulig 5213 bp RNA RNA 02-SEP-1996 DEFINITION Mitochondrion Caenolestes fuliginosus.; . ACCESSION U61072 KEYWORDS . SOURCE Mitochondrion Caenolestes fuliginosus. ORGANISM Mitochondrion Caenolestes fuliginosus. REFERENCE 1 (bases 1 to 1030) AUTHORS Springer,M.S. and Douzery,E. TITLE Secondary structure and patterns of evolution among mammalian mitochondrial 12S rRNA molecules JOURNAL J. Mol. Evol. 43 (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 1030) AUTHORS Springer,M.S. TITLE Direct Submission JOURNAL Submitted (17-JUN-1996) University of California, Biology, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U61072 BASE COUNT 354 a 202 c 162 g 242 t 4253 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UU CUA-UUAAUU -A-UUAU-UA |GA-AC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCUGCCCGGU GAGAA---UA U|CCU-Cuua --aa-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cauua aaca-)---- 1261 ---------- ---------- --ag--uua- --aAAGGAAU |--------- uGGUAUCA-- 1321 -GGCACACC- -----(-acc uaa------- ---------- ---------- ------)--- 1381 --GGU|---A GCCAA--UAA C|ACCUU-GU --|------- (-uuca-)-- -------CC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-UAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UAA-ag- ua-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCG-- 1981 AAUUA-AUAG A-------au accGGC|GUA AAGcGUGUCU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------cu -aucaaacaa aauaaa--gu -----|UAAU ACUUAA-CUA ----AACU(G 2341 UAAUA)CGUU CU-------A GUUA-AUACU AAA------- ----auaaau -aAC(-UAAU 2401 -)GU|a---- ----acuuua uuau------ -c-------c gcc-uacuAC ACUAC-AGCU 2461 A-UGG---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCAU-AGC- CUUAAA-CCA 2521 A--GGUA-AU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aa-(uaac)a a---A-AUUA 2701 C-U|--C|GC C-AGAG-AAC UACUAGC(-- -AAUC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUUACC CUUUUUUGCC ---------- ---------- 2881 (-------au ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CC CAC-|CCC(A --AAA)GGG- -----(aua- 3181 aa-)------ A-AGUAAGCA AGA-UUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --cuaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------A 3841 A-A-AG-GG- AA-AGU--AA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AGaaua 4021 ---------- ------ACGA --AUCAU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AA-A--AU -GuuUGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCA 4261 AUAGGG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aaaaaauca 4381 u--ua-acaa uaaauaauac uaa--acuua aaauaaa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAACA -C-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.rapha 5213 bp RNA RNA 16-DEC-1997 DEFINITION Mitochondrion Rhyncholestes raphanurus.; . ACCESSION AF0380 6 KEYWORDS . SOURCE Mitochondrion Rhyncholestes raphanurus. ORGANISM Mitochondrion Rhyncholestes raphanurus. REFERENCE 1 (bases 1 to 1030) AUTHORS Springer,M.S., Burk,A., Metcalf,A., Cleven,G.C., Lavergne,A., Douzery,E. and Catzeflis,F.M. TITLE Rates of 12S rRNA nucleotide substitution in mammals with evidence for rate acceleration in proboscideans JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1030) AUTHORS Springer,M.S., Burk,A., Metcalf,A., Cleven,G.C., Lavergne, A., Douzery,E. and Catzeflis,F.M. TITLE Direct Submission JOURNAL Submitted (10-DEC-1997) Biology, University of California, 1354 Spieth, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038016 BASE COUNT 352 a 207 c 165 g 238 t 4251 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|GGCCU-UU CUA-UUAAUU -C-UUAU-UA |GA-UC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCUGUCCGGU GAGAA---UG U|CCU-Uaca --uc-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---aaca aaau-)---- 1261 ---------- ---------- --aa--gua- a-aAAGGAAC |--------- uGGCAUCA-- 1321 -GGCACACC- -----(auau ca-------- ---------- ---------- ------)--- 1381 --GGU|---A GCCAA--UAA C|GCCUU-GC --|------- (-uuaa-)-- -------CC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AC UAACAUUGAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-AUCA-U- AA-UAAacua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAG A-------AU UACGGC|GUA AAGCGUGUUU -A-AGC---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------uu -accaguaaa aauaaa--gu -----|UAAU ACUUAA-CUA ----AACU(G 2341 UAAUA)CGUU CU-------A GCUA-AUACU AAA------- ----auacau -gAC(-UAAC 2401 -)GU|a---- ----acuuua uuau------ -a-------- gcc-caccAC ACUAC-AGCU 2461 A-UGG---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCAU-AGC- CUCAAA-CUA 2521 A--GGUA-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(uaac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACUAGC(-- -AACU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUUACC CUUUUUUGCC ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CC CAC-|CCC(A --AAA)GGG- -----(aca- 3181 aa-)------ a-AGUAAGCA AGA-UUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --cuaaacc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCA UAU------- ---------A 3841 A-A-AG-GG- GA-AGC--AA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a uu---)---- ---------- ---------- UAG-AGaaca 4021 ---------- ------ACGA --AUCAU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) uaaa-a-ugu -u--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCA 4261 AUAGGG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaaauacu- 4381 auuac-ucau a-ucu-aaaa cuacaaauca aaauaaa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAAUA CC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.O.afer 5213 bp RNA RNA 15-MAY-1997 DEFINITION Mitochondrion Orycteropus afer.; . ACCESSION U97338 KEYWORDS . SOURCE Mitochondrion Orycteropus afer. ORGANISM Mitochondrion Orycteropus afer. REFERENCE 1 (bases 1 to 2601) AUTHORS .G., Amrine,H.M. and Stanhope,M.J. Springer,M.S., Cleven,G.C., Madsen,O., de Jong,W.W., Waddell,V TITLE Endemic African mammals shake the phylogenetic tree JOURNAL Nature (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 2601) AUTHORS Springer,M.S., Cleven,G.C., Madsen,O., de Jong,W.W., Waddell,V.G., Amrine,H.M. and Stanhope,M.J. TITLE Direct Submission JOURNAL Submitted (12-APR-1997) Biology, University of California, 1354 Spieth Hall, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U97338 BASE COUNT 347 a 202 c 165 g 242 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGGUU 661 (UGG-)U-CC U|AGCCU-UU CUA-UUAGUU -G-ACAG-UA |AA-UU--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCUCCCAGU GAAAU--aUG C|CCU-Cuaa --au-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-uuacc- -----)---- 1261 ---------- ---------- --gg--auu- a-aAAGGAGC |--------- CGGUAUCA-- 1321 -AGCUCAC-- -----(cuag a--------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--UGA C|GCCUU-GC --|------- (-uaa--)-- -------AC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUA-AU AAAAAUUUAG C-AAUGAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-UAU---a acua------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAG U-------aa uacGGC|GUA AAGCAUGAUU -A-ggg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -aauaacaua aauaaa--gu -----|UAAA UGUAAA-UCA ---aAGCU(G 2341 UAAAA)AGCU CC-------u gauu-aacuu aaa------- ----auaaga -cAC(-GAAA 2401 -)GU|u---- ----acuuua ---ccacu-- ---------- ccu-GAAUUC AUGAU-AGCU 2461 A-GGA---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CAUAAA-CUU 2521 A--AAUA-UU |UC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(caac)a a---A-AUUA 2701 U-U|--C|GC C-AGAG-AAC UACAAGC(-- -AACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-UC CAUCUAGA|G GAGCCUGU-U |AUGUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUCACC AUCACUUGCC ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(U --ACA)AGG- -----(aau- 3181 aa-)------ U-AGUAAGCC AAA-UUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uacc-- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC AAU------- ---------G 3841 U-G-AU-GG- cA-AUA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu uu---)---- ---------- ---------- AAG-AAcaua 4021 ucccu----- ------ACGA --AAGCC-CA A-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-CA-A--GG -C--UAAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-ga-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 AUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aacuacuag 4381 uauua-cua- -aaaaua--u uucacuacau aaac--guac ua-------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-C AAGUCGUAAC AAGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA UU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.I.macro 5213 bp RNA RNA 02-SEP-1996 DEFINITION Mitochondrion Isoodon macrourus.; . ACCESSION U61074 KEYWORDS . SOURCE Mitochondrion Isoodon macrourus. ORGANISM Mitochondrion Isoodon macrourus. REFERENCE 1 (bases 1 to 1018) AUTHORS Springer,M.S. and Douzery,E. TITLE Secondary structure and patterns of evolution among mammalian mitochondrial 12S rRNA molecules JOURNAL J. Mol. Evol. 43 (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 1018) AUTHORS Springer,M.S. TITLE Direct Submission JOURNAL Submitted (17-JUN-1996) University of California, Biology, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U61074 BASE COUNT 343 a 203 c 162 g 241 t 4264 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCU-UU CUA-UUAAUU -C-UAAU-UA |AA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCACCUGU GAGAA---UG C|CCU-Caaa --ac-ug--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----ua ucu--)---- 1261 ---------- ---------- --aa--guu- a-aAAGGAGC |--------- cGGUAUCA-- 1321 -GGCACACU- -----(-cuu ---------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UCA C|ACCUU-GC --|------- (-uua--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AUA----C-A 1501 GCA|GUG-AC UAAUAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AA-UUAuuua a--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAG A-------ac AACGGC|GUA AAGcGUGUUU -A-AAU---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------ua -uuuaaucaa aauaaa--gu -----|UAAU AUCUAA-CUA ----AACU(G 2341 UAAUA)CGUA AU-------A GUUA-GCACU AAA------- ----auauac -uAC(-UAAA 2401 -)GU|g---- ----acuuua cu-u------ -c-------a auu-gaauAC ACGAC-AGCU 2461 A-AGA---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-CCU 2521 A--AGUU-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- auu(uaac)a a---A-AUGA 2701 C-U|--C|GC C-AGAG-AAC UACUAGC(-- -AAAU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUCACC CUCUCUUGCC ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --CA-)GGG- -----(caa- 3181 aa-)------ A-AGCAGGCA AAA-UUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaccc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACA UAU------- ---------G 3841 A-G-AA-GG- AA-AGU--AA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c cc---)---- ---------- ---------- UAG-AGuacu 4021 ---------- ------ACGA --AUCAU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-AA-G--AU -GcuUGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-gu-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGGG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aauauaau- 4381 caaua--aua uaaauaau-- uaaacgaguu aaaaaa---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GU- ACUUGGACUA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.E.kalub 5213 bp RNA RNA 15-MAY-1997 DEFINITION Mitochondrion Echymipera kalubu.; . ACCESSION U97342 KEYWORDS . SOURCE Mitochondrion Echymipera kalubu. ORGANISM Mitochondrion Echymipera kalubu. REFERENCE 1 (bases 1 to 2599) AUTHORS Springer,M.S., Cleven,G.C., Madsen,O., de Jong,W.W., Waddell,V .G., Amrine,H.M. and Stanhope,M.J. TITLE Endemic African mammals shake the phylogenetic tree JOURNAL Nature (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 2599) AUTHORS Springer,M.S., Cleven,G.C., Madsen,O., de Jong,W.W., Waddell,V.G., Amrine,H.M. and Stanhope,M.J. TITLE Direct Submission JOURNAL Submitted (12-APR-1997) Biology, University of California, 1354 Spieth Hall, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U97342 BASE COUNT 354 a 199 c 162 g 238 t 4260 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCU-UU CUA-UUAAUU -U-UAAU-UA |AA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCUACCUGU GAGAA---UG C|CCU-Caaa --ac-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----ca aauuu)---- 1261 ---------- ---------- --aa--guu- a-aAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACACU- -----(-aca ---------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--UUA C|ACCUU-GC --|------- (-uca--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG ACA----C-A 1501 GCA|GUG-AC UAACAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AA-UUAu-uu a--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAG A-------cu aacGGC|GUA AAGCGUGUUU -A-AAU---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------aa -ccaaaacaa gauaaa--gu -----|UAAU AUACGA-CUA ----AACU(G 2341 UAAUA)CGUU AU-------A GUUA-AUAUU AAA------- ----auauac -cAC(-UAAA 2401 -)GU|g---- ----acuuua auau------ -a-------- auu-gaaaAC ACGAU-AGCU 2461 A-AGG---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 A--AAUU-AU |U-|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- auu(uaac)a a---A-AUGA 2701 U-U|--C|GC C-AGAG-UAC UACUAGC(-- -AAAU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUCACC CUCUCUUGCC ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --CA-)GGG- -----(cua- 3181 aa-)------ A-AGUAAGCA AAA-UCAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaucc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACA UAU------- ---------G 3841 A-G-AA-GG- AA-AGA--AA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a uu---)---- ---------- ---------- UAG-AGaaua 4021 ---------- ------ACGA --AUCAU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-AA-G--AU -GccUGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-gu-- --)GCUUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGGG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aacguaaca 4381 auaaa-ccau aaauaauaaa ucaacagu-- acauaaa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAUUA -C-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.Mi.long 5213 bp RNA RNA 16-DEC-1997 DEFINITION Mitochondrion Microperoryctes longicauda.; . ACCESSION AF0380 7 KEYWORDS . SOURCE Mitochondrion Microperoryctes longicauda. ORGANISM Mitochondrion Microperoryctes longicauda. REFERENCE 1 (bases 1 to 1018) AUTHORS Douzery,E. and Catzeflis,F.M. Springer,M.S., Burk,A., Metcalf,A., Cleven,G.C., Lavergne,A., TITLE evidence for rate acceleration in proboscideans Rates of 12S rRNA nucleotide substitution in mammals with JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1018) AUTHORS Springer,M.S., Burk,A., Metcalf,A., Cleven,G.C., Lavergne, A., Douzery,E. and Catzeflis,F.M. TITLE Direct Submission JOURNAL Submitted (10-DEC-1997) Biology, University of California, 1354 Spieth, Riverside, CA 92521, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF038017 BASE COUNT 342 a 210 c 163 g 235 t 4263 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UGG-)U-CC U|AGCCU-UU CUA-UUAAUU -U-UAAU-UA |AA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCUACCCGU GAGAA---UG C|CCU-Caaa --ac-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----ua uucu-)---- 1261 ---------- ---------- --aa--guc- a-aAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACACU- -----(auu- ---------- ---------- ---------- ------)--- 1381 --AGU|---A GCCCA--CUA C|ACCUU-GC --|------- (-uca--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG ACA----C-A 1501 GCA|GUG-AC UAACAUUAAG C-CAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AA-UUAuaua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AAUUA-AUAG A-------UU AACGGC|GUA AAGCGUGUUU -A-AAU---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -uauaauuaa aauaaa--gu -----|UAAC AUCUAA-CUA ----AGCU(G 2341 UAAUA)CGUU AU-------A GUUA-GUAUU GAA------- ----auauac -uAC(-UAAG 2401 -)GU|g---- ----acuuua auuc------ -u-------- auu-gaacAC ACGAU-AGCU 2461 A-AGA---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CCUAAA-CCC 2521 A--AGCU-AU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -cc(aaac)a a---A-AUAG 2701 C-U|--C|GC C-AGAG-AAC UACUAGC(-- -AAAU--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA U-ACCUCACC CUCUCUUGCC ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |A------UC GU-CA|G-CU CAC-|CCC(A --CA-)GGG- -----(cca- 3181 aa-)------ a-AGUAGGCA AAA-UUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaucc- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|ACA CAU------- ---------G 3841 A-G-AA-GG- AA-AGA--AA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c uc---)---- ---------- ---------- UAG-AGcaua 4021 ---------- ------ACGA --AUCAU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) u-AA-G--AU -GcuUGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- auaga-gu-- --)GCUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGGG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -aacacaac- 4381 a-agu-a-au auuaa-uaau aaaccaaaac ccauaaa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAUUA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (16)-Sauro 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (17)-Sauri 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (18)-Archo 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (19)-Aves 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.A.spons 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Aix sponsa.; . ACCESSION U83733 KEYWORDS . SOURCE Mitochondrion Aix sponsa. ORGANISM Mitochondrion Aix sponsa. REFERENCE 1 (bases 1 to 995) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 995) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83733 BASE COUNT 318 a 284 c 202 g 191 t 4218 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CAG-UUGGUU -U-UUGC-UA |GA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GUAAA---UG C|CCU-Caac -agc-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--accac cacc-)---- 1261 ---------- ---------- --ag--gcc- u-ugAGGAGC |--------- gGGUAUCA-- 1321 -GGCACAC-- -----(ccaa gca------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-caa--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-GU UAACAUUAAG C-AAUGAGU( ---------- ----GCAA)A CUCGA-CUU| 1561 A|-GUCA-U- AG-CAA---- ---------- ---------- (gcuuuauuu uccccaa--- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GAC-CCA-- 1981 AAUCA-ACUG U-c-ccacaa agCGGC|GUA AAGAGUGGu- -aauag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ----uaccua -uccuacuua acuaag--au -----|CAAA AUGCAA-CCA ----AGCU(G 2341 UCACA)AGC| ACA------A GAUG-CACCU AAA------- -----cacac -cau(-caag 2401 -)au|g---- ----aucuua ggaacuagc- gacuga---- uuugaa-uCC ACGAA-AGCC 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -uc(cuac)c a---A-AGUA 2701 U-C|--C|GC C-AGAG-AAC UACGAGC(-- -GCAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUC A-ACCCAACC GCCCCUUGCC ---------- ---------- 2881 (---a---ag ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(G --AAU)GAG- -----(agc- 3181 aca)-----A C-AGUGAGCG CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----auuccc 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 G-G-GC-GG- -A-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua cgc--)---- ---------- ---------- UAG-GGcaac 4021 ---------- ------ACGA --AAAGA-AG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) U-GC-U--UC -U--AGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-AUGAGA(- uaaua-aa-- --)GCCCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 CUAGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcc--- 4381 acgcc-ccca -uauaacuaa uacccuaaau a----ugcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------AA GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUAGAACA CU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.formo 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Anas formosa.; . ACCESSION U83732 KEYWORDS . SOURCE Mitochondrion Anas formosa. ORGANISM Mitochondrion Anas formosa. REFERENCE 1 (bases 1 to 984) AUTHORS Knight,A., Sawchuk,S.J. and Yuri,T. Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., TITLE orders based on mitochondrial DNA Phylogenetic relationships among and within select avian JOURNAL SYSTEMATICS: 211-245; Academic Press (1997) (in) Mindell,D.F. (Ed.) ; AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 984) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83732 BASE COUNT 315 a 280 c 202 g 187 t 4229 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CAG-UUGGUU -U-UUGC-UA |GA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GUAAA---UG C|CCU-caac -agc-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---cacc cc---)---- 1261 ---------- ---------- --ag--gcc- u-uAAGGAGC |--------- gGGUAUCA-- 1321 -GGCACAC-- -----(ccaa gua------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-uaa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-GU UAACAUUAAG C-AAUGAGU( ---------- ----GCAA)A CUCGA-CUU| 1561 A|-GUCA-U- AG-CAA---- ---------- ---------- (----gccuc cacccaa--- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GAC-CCA-- 1981 AAUCA-ACUG Ucc--u-aca agCGGC|GUA AAGAGUGGu- -aaaau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----gccua -uccuaucua acuaag--au -----|CAAA AUGCAA-CUA ----AGCU(G 2341 UCGCA)AGC| ACA------A GAUG-CACCU AAA------- -----cacac -cau(-uaag 2401 -)au|g---- ----aucuua gaaacuagc- gauug----- auuuaaacCC ACGAA-AGCC 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(cuac)c a---A-AGUA 2701 U-C|--C|GC C-AGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUC A-ACCCAACC GCCCCUUGCC ---------- ---------- 2881 (---a---ag ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(G --AAU)GAG- -----(agc- 3181 aca)-----A C-AGUGAGCG CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----acccc- 3781 ---------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 A-G-GC-GG- -A-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua ca---)---- ---------- ---------- UAG-GGcagc 4021 ---------- ------ACGG --AAAGA-AG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) U-GC-U--UC -U--AGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- uaaua-ga-- --)GCCCACU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 CUAGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcc--- 4381 -acac-cccc auauaacuaa ugccaccua- aa---ugcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUAGAAUA CU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.pla.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Anas platyrhynchos. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Anas platyrhynchos. ORGANISM Mitochondrion Anas platyrhynchos. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L16770 DEFINITION Anas platyrhynchos mitochondrial complete transfer RNA-Glu, transfer RNA-Phe, transfer RNA-Val, transfer RNA-Leu, 12S ribosomal RNA, and 16S ribosomal RNA genes. SOURCE Mitochondrion Anas platyrhynchos (strain Tsai ya, organelle Mitochondrion Anas platyrhynchos) adult liver DNA. ORGANISM Mitochondrion Anas platyrhynchos Eukaryota; Animalia; Chordata; Vertebrata; Aves; Neornithes; Neognathae; Anseriformes; Anatidae. REFERENCE 1 (bases 1 to 3919) AUTHORS Liu,S. and Lin,L. TITLE Sequence analysis of mitochondrial DNA control region from two genera of ducks JOURNAL Unpublished (1993) FEATURES Location/Qualifiers tRNA 1..71 /anticodon=(pos:40..42,aa:Glu) /product="transfer RNA-Glu" /gene="tRNA-Leu" /note="putative" D-loop 72..1117 tRNA 1118..1187 /anticodon=(pos:1150..1152,aa:Phe) /product="transfer RNA-Phe" /gene="tRNA-Phe" /note="putative" rRNA 1188..2172 /product="12S ribosomal RNA" /gene="12S rRNA" /note="putative" tRNA 2173..2243 /anticodon=(pos:2206..2208,aa:Val) /product="transfer RNA-Val" /gene="tRNA-Val" /note="putative" rRNA 2244..3845 /product="16S ribosomal RNA" /gene="16S rRNA" /note="putative" tRNA 3846..3919 /anticodon=(pos:3881..3883,aa:Leu) /product="transfer RNA-Leu" /gene="tRNA-Leu" /note="putative" source 1..3919 /organism="Mitochondrion Anas platyrhynchos organelle Mitochondrion Anas platyrhynchos" /strain="Tsai ya" /dev_stage="adult" /tissue_type="liver" /sequenced_mol="DNA" BASE COUNT 312 a 279 c 207 g 187 t 4228 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CAG-UUGGUU -U-UUGC-UA |GA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GUAAA---UG C|CCU-Caau -agc-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----uca cccc-)---- 1261 ---------- ---------- --ag--gcc- u-uaAGGAGC |--------- gGGUAUCA-- 1321 -GGCACAC-- -----(ccaa gca------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-uaa--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-GU UAACAUUAAG C-AAUGAGU( ---------- ----GCAA)A CUCGA-CUU| 1561 A|-GUCA-U- AG-CAA---- ---------- ---------- (-gccuccac ccaa------ 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GAC-CCA-- 1981 AAUCA-ACUG Ucc--u-aca agCGGC|GUA AAGAGUGGu- -aagau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----gccua -uccuaccua acuaag--au -----|CAAA AUGCAA-CUA ----AGCU(G 2341 UCGCA)AGC| ACA------A GAUG-CACCU AAA------- -----cacac -cau(-caag 2401 -)au|g---- ----aucaaa gaaacuagc- gauua----- auuugaacCC ACGAA-AGCC 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(cuac)c g---A-AGUA 2701 U-C|--C|GC C-AGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUAU-U |CUGUA--AU CG(AUGAUCC 2821 A--------- ----)CGAUC A-ACCCAACC GCCCCUUGCC ---------- ---------- 2881 (---a---ag ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(G --AAU)GAG- -----(agc- 3181 gca)-----A C-AGUGGGCG CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----acccc- 3781 ---------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-G-AC-GG- -A-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ug ca---)---- ---------- ---------- UAG-GGcaac 4021 ---------- ------ACGG --AAAGA-AG U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) U-GC-U--UC -U--AGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- caaua-aa-- --)GCUCGCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 CUAGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< auaagcc--- 4381 -acac-cccc acauaauuaa uaccucguaa au-----gcc a--------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUAGAAUA CU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.pla.2 5213 bp RNA RNA 02-JUL-1996 DEFINITION Mitochondrion Anas platyrhynchos.; ribosomal RNA. ACCESSION U59666 KEYWORDS ribosomal RNA. SOURCE Mitochondrion Anas platyrhynchos. ORGANISM Mitochondrion Anas platyrhynchos. REFERENCE 1 (bases 1 to 982) AUTHORS Mindell,D.P., Knight,A., Baer,C. and Huddleston,C.J. TITLE rate and body temperature hypotheses Slow rates of molecular evolution in birds and the metabolic JOURNAL Mol. Biol. Evol. 13, 422-426 (1996) STANDARD No information REFERENCE 2 (bases 1 to 982) AUTHORS Mindell,D.P., Knight,A., Baer,C. and Huddleston,C.J. TITLE Direct Submission JOURNAL Submitted (31-MAY-1996) Dept. of Biology and Museum of Zoology, University of Michigan, 1109 Geddes Ave., Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U59666 BASE COUNT 308 a 278 c 207 g 188 t 4232 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CAG-UUGGUU -U-UUGC-UA |GA-CA--UA -UAC-A-UGC 721 --AGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GAUAAa--UG C|CCU-caau -agc-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----uca cccc-)---- 1261 ---------- ---------- --ag--gcc- uu-AAGGAGC |--------- gGGUAUCA-- 1321 -GGCACAC-- -----(ccaa gca------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-uaa--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-GU UAACAUUAAG C-AAUGAGU( ---------- ----GCAA)A CUCGA-CUU| 1561 A|-GUCA-U- AG-CAA---- ---------- ---------- (------gcc uccacccaa- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GAC-CCA-- 1981 AAUCA-ACUG Ucc--u-aca agCGGC|GUA AAGAGUGGU- -aagau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----gccua -uccuaccua acuaag--au -----|CAAA AUGCAA-CUA ----AGCU(G 2341 UCGCA)AGC| ACA------A GAUG-CACCU AAA------- -----cacac -cau(-caag 2401 -)au|g---- ----aucuua gaaacuagc- gauua----- auuugaacCC ACGAA-AGCC 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(cuac)c g---A-AGUA 2701 U-C|--C|GC C-AUAU-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- -CCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUGAUCC 2821 A--------- ----)CGAUC A-ACCCAACC GCCCCUUGCC ---------- ---------- 2881 (---g---aa ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(G --AAU)GAG- -----(agc- 3181 gca)-----A C-AGUGGGCG CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----acccc- 3781 ---------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-G-AC-GG- -A-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u gca--)---- ---------- ---------- UAG-GGcagc 4021 ---------- ------ACGG --ANAGA-AG U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) U-GC-U--UC -U--AGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- caaua-aa-- --)GCUCGCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 CUAGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< auaagcc--- 4381 acacc-ccca cauaacuaau accacgua-- aa---ugcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------AA GAUG-AGG-U AAGU-GUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUAGAAUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.caeru 5213 bp RNA RNA 25-JAN-1994 DEFINITION Anser caerulescens.; cytochrome b; transfer RNA-Glu; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Thr. ACCESSION X77190 KEYWORDS cytochrome b; transfer RNA-Glu; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Thr. SOURCE Anser caerulescens. ORGANISM Anser caerulescens. REFERENCE 1 (bases 1 to 2529) AUTHORS Quinn,T.W. TITLE Direct Submission JOURNAL .W. Quinn, Dept. of Biol. Sciences, Univ. of Denver, Denver CO 80208, USA Submitted (20-DEC-1993) to the EMBL/GenBank/DDBJ databases. T STANDARD No information REFERENCE 2 (bases 1 to 2529) AUTHORS Quinn,T.W. and Wilson,A.C. TITLE Sequence evolution in and around the mitochondrial control region in birds JOURNAL Unpublished STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X77190 NCBI gi: 450563 BASE COUNT 163 a 137 c 95 g 113 t 4705 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~AAAGACU 661 (UAG-)U-CC U|AACCU-UA CGG-UUGGUU -U-UUGC-UA |AA-UA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GUAAA---CG C|CCU-Cgac -cac-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(aucccua uac--)---- 1261 ---------- ---------- --ag--gcc- u-uGAGGAGC |--------- GGGUAUCA-- 1321 -GGCACAC-- -----(ccaa gua------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUC-GC --|------- (-uaa--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG UAUU---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUGAGU( ---------- ----GCAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CAA---- ---------- ---------- (--cagccua acuucaa--- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -AAC-CCA-- 1981 AAUCA-ACCG UCc-uauuaa caCGGC|GUA AAGAGUGGua --aaau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----gccua -uccuagcua acuaag--au -----|CAAA AUGCAA-CUA ----AGCU(G 2341 UCAUA)AGC| CCA------A GAUG-CACCU AAA------- -----cacac -cau(-uaag 2401 -)au|g---- ----aucuua ggaacuaac- gacug----- auuuaaacCC ACGAA-AGCC 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cu(u~~~)~ ~~~~~~~~~~ 2701 ~-~|~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ 2821 ~--------- ---~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 (~~~~---~~ ~~-)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~|~~~ 3121 |~~|~~~~~~ |~~~~~~~~~ ~~~~~|~-~~ ~~~~|~~~(~ ~-~~~)~~~~ ~~~~~(~~~- 3181 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3241 ~~)<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~>~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~-~)~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~|~~~ ~~~------- -------~~~ 3841 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~>(~~~ ~~~-~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ --~(~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.rossi 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Anser rossi.; . ACCESSION U83734 KEYWORDS . SOURCE Mitochondrion Anser rossi. ORGANISM Mitochondrion Anser rossi. REFERENCE 1 (bases 1 to 988) AUTHORS Knight,A., Sawchuk,S.J. and Yuri,T. Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., TITLE orders based on mitochondrial DNA Phylogenetic relationships among and within select avian JOURNAL SYSTEMATICS: 211-245; Academic Press (1997) (in) Mindell,D.F. (Ed.) ; AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 988) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83734 BASE COUNT 317 a 273 c 200 g 198 t 4225 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CGG-UUGGUU -U-UUGC-UA |AA-UA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GUAAA---CG C|CCU-cgac -cac-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(accccua ua-c-)---- 1261 ---------- ---------- --ag--gcc- u-ugAGGAGC |--------- gGGUAUCA-- 1321 -GGCACAC-- -----(ccaa gua------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUC-GC --|------- (-uaa--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUGAGU( ---------- ----GCAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CAA---- ---------- ---------- (-cagccuaa cuucaa---- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -AAC-CCA-- 1981 AAUCA-ACCG Ucc-uauuaa caCGGC|GUA AAGAGUGGu- -aaaau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----gccua -uccuagcua acuaag--au -----|CAAA AUGCAA-CUA ----AGCU(G 2341 UCAUA)AGC| CCA------A GAUG-CACCU AAA------- -----cacac -cau(-uaag 2401 -)au|g---- ----aucuua ggaacua-ac ga-cug---- auuuaaacCC ACGAA-AGCC 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cu(uuac)c g---A-AGUA 2701 U-C|--C|GC C-AGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUACA--AU CG(AUAAUCC 2821 C--------- ----)CGAUU A-ACCCAACC ACCCCUUGCC ---------- ---------- 2881 (-------aa ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(G --AAU)GAG- -----(agc- 3181 aca)-----A C-AGUGGACA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----acccc- 3781 ---------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-A-GU-GG- -G-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu ca---)---- ---------- ---------- UAG-GGc-ac 4021 ---------- ------ACGG --AAAGA-AG C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) C-AC-U--UC -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GUGGGA(- caaua-ga-- --)GCCUACU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaagcc--- 4381 -acau-ucca cauaacuaau accauaaac- -----acgcu g--------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUAGAAUA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.sandv 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Branta sandvicensis.; . ACCESSION U83735 KEYWORDS . SOURCE Mitochondrion Branta sandvicensis. ORGANISM Mitochondrion Branta sandvicensis. REFERENCE 1 (bases 1 to 985) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 985) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83735 BASE COUNT 316 a 273 c 202 g 194 t 4228 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|GACCU-UA CGG-UUGGUU -U-UUGC-UA |AA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GUAAA---CG C|CCU-cgac -cgc-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(acuaccg ua-c-)---- 1261 ---------- ---------- --ag--gcc- u-ugAGGAGC |--------- gGGUAUCA-- 1321 -GGCACAC-- -----(ccaa gca------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUC-GC --|------- (-uaa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-GU UAACAUUAAG C-AAUGAGU( ---------- ----GCAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CAA---- ---------- ---------- (-caaccuca uuucaa---- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -AAC-CCA-- 1981 AAUCA-ACCG U----cuuaa caCGGC|GUA AAGAGUGGu- -aaaau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----gccua -uccuagcua acuaag--au -----|CAAA AUGCAA-CUG ----AGCU(G 2341 UCAUA)AGC| CCA------A GAUG-CACCU AAA------- -----cacac -cau(-uaag 2401 -)au|g---- ----aucuua ggaacua-ac ga-cug---- auuuaaacCC ACGAA-AGCC 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cu(uuac)c g---A-AGUA 2701 U-C|--C|GC C-AGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUACA--AU CG(AUAAUCC 2821 C--------- ----)CGAUC A-ACCCGACC ACCCCUUGCC ---------- ---------- 2881 (-------ag ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(G --AAU)GAG- -----(aga- 3181 aca)-----A C-AGUGGACA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----acccc- 3781 ---------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu ca---)---- ---------- ---------- UAG-GGc-ac 4021 ---------- ------ACGG --AAAGA-AG U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) C-AC-U--UC -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GUGGGA(- caaua-ga-- --)GCCUACU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACC--GGCC 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaagcc--- 4381 -acac-caca cauaacuaau accauaaac- -----acgcu a--------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUAGAAUA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.mosch 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Cairina moschata. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Cairina moschata. ORGANISM Mitochondrion Cairina moschata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L16769 DEFINITION Cairina moschata mitochondrial complete transfer RNA-Glu, transfer RNA-Phe, transfer RNA-Val, transfer RNA-Leu, 12S ribosomal RNA, and 16S ribosomal RNA genes. SOURCE Mitochondrion Cairina moschata (strain Mascovy, organelle Mitochondrion Cairina moschata) adult liver DNA. ORGANISM Mitochondrion Cairina moschata Eukaryota; Animalia; Chordata; Vertebrata; Aves; Neornithes; Neognathae; Anseriformes; Anatidae. REFERENCE 1 (bases 1 to 3858) AUTHORS Liu,S. and Lin,L. TITLE Sequence analysis of mitochondrial DNA control region from two genera of ducks JOURNAL Unpublished (1993) FEATURES Location/Qualifiers tRNA 1..67 /anticodon=(pos:36..38,aa:Glu) /product="transfer RNA-Glu" /gene="tRNA-Glu" /note="putative" D-loop 68..1111 tRNA 1112..1179 /anticodon=(pos:1144..1146,aa:Phe) /product="transfer RNA-Phe" /gene="tRNA-Phe" /note="putative" rRNA 1180..2172 /product="12S ribosomal RNA" /gene="12S rRNA" /note="putative" tRNA 2173..2244 /anticodon=(pos:2207..2209,aa:Val) /product="transfer RNA-Val" /gene="tRNA-Val" /note="putative" rRNA 2245..3784 /product="16S ribosomal RNA" /gene="16S rRNA" /note="putative" tRNA 3785..3858 /anticodon=(pos:3820..3822,aa:Leu) /product="transfer RNA-Leu" /gene="tRNA-Leu" /note="putative" source 1..3858 /organism="Mitochondrion Cairina moschata organelle Mitochondrion Cairina moschata" /strain="Mascovy" /dev_stage="adult" /haplotype="diploid" /tissue_type="liver" /sequenced_mol="DNA" BASE COUNT 318 a 289 c 202 g 184 t 4220 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CAG-UUAAUU -U-UUGC-UA |GA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GUAAA---UG C|CCU-caac -agc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--acuac cacc-)---- 1261 ---------- ---------- --ag--gcc- u-uAAGGAGC |--------- gGGUAUCA-- 1321 -GGCACAC-- -----(ccaa gca------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (ccaa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-GU UAACAUUAAG C-AAUGAGU( ---------- ----GCAA)A CUCGA-CUU| 1561 A|-GUCA-U- AG-CAA---- ---------- ---------- (-guuccauu uuccccaa-- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-U---C UUG--G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GGC-CCA-- 1981 AAUCA-ACUG Ucc--acaua agCGGC|GUA AAGAGUGGua -auaau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----gcuua -uccuacuua acuaag--au -----|CAAA AUGCGG-CUA ----AGCU(G 2341 UCGCA)AGC| ACA------A GACG-CACCU AAA------- -----cacac -cau(-caag 2401 -)au|g---- ----aucuua gaaacuagc- gacgg----- auuuaaacCC ACGAA-AGCC 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -uc(cuac)c g---A-AGUA 2701 U-C|--C|GC C-AGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAACCC 2821 A--------- ----)CGAUC A-ACCCAACC ACCCCUUGCC ---------- ---------- 2881 (-------aa aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(G --AAU)GAG- -----(agc- 3181 aca)-----A C-AGUGAGCG CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---accccc- 3781 ---------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 G-G-CU---- -A-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(cac ac---)---- ---------- ---------- UAG-GGcagc 4021 ---------- ------ACGA --AAAGA-AG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--c-) U-GC-U--UC -U--GGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-GUGGGA(- caaua-ga-- --)GCCUACU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- gGCC--GGCC 4261 CUAGGG-CA- CGUACAUA-C -CGCCCGACA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcc--- 4381 -acgc-cccc acauaacuaa uacccuaaa- ca---ugcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------AA GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUAGAAUA CU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.cosco 5213 bp RNA RNA 03-AUG-1995 DEFINITION Mitochondrion Coscoroba coscoroba.; . ACCESSION S76216 KEYWORDS . SOURCE Mitochondrion Coscoroba coscoroba. ORGANISM Mitochondrion Coscoroba coscoroba. REFERENCE 1 (bases 1 to 983) AUTHORS Zimmer,R., Erdtmann,B., Thomas,W.K. and Quinn,T.W. TITLE Phylogenetic analysis of the Coscoroba coscoroba using mitochondrial srRNA gene sequences JOURNAL Mol. Phylogenet. Evol. 3 (2), 85-91 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: S76216 NCBI gi: 927599 BASE COUNT 312 a 273 c 206 g 192 t 4230 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---AAAGACU 661 (UAG-)U-CC U|AACCU-UA CGG-UUGGUU -U-UUGC-UA |AA-CA--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GUAAA---CG C|CCU-CGAU -CGC-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---acca ccauc)---- 1261 ---------- ---------- --ag--GCC- U-CCAGGAGC |--------- AGGUAUCA-- 1321 -GGCGCAC-- -----(ccaa gca------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUC-GC --|------- (-uaa--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG UAUU---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUGAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CAA---- ---------- ---------- (--------c agccucacua 1621 a-------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGG|--- -AAC-CCA-- 1981 AAUCA-ACCG UCc--a-aua agCGGC|GUA AAGAGUGGua -a-gau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----gcuua -uccuaacua acuaag--au -----|CAAA AUGCAA-CUA ----AGCU(G 2341 UCAUA)AGC| UAA------A GAUG-CACCU AAA------- -----cacac -cau(-caag 2401 -)au|g---- ----aucuua ggaacuagc- gauug----- auuugacuCC ACGAA-AGCC 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -uu(cuac)c g---A-AGUA 2701 U-C|--C|GC C-AGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUACA--AU CG(AUGAUCC 2821 A--------- ----)CGAUC A-ACCCAACC GCCCCUUGCC ---------- ---------- 2881 (-------aa ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(G --AAU)GAG- -----(agc- 3181 gca)-----A C-AGUGGGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----acccc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 G-G-AC-GG- -A-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua ca---)---- ---------- ---------- UAG-GGCAC- 4021 ---------- ------ACGA --AAAGA-AG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) U-GC-U--UC -U--AGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- caaua-ga-- --)GCCUACU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaagcc--- 4381 acgu---ucu acauaccuaa uaccaacaac a----ugcug ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------AA GAUG-AGG-U AAGUCGUAAU AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUAGAAUA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.atrat 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Cygnus atratus.; . ACCESSION U83731 KEYWORDS . SOURCE Mitochondrion Cygnus atratus. ORGANISM Mitochondrion Cygnus atratus. REFERENCE 1 (bases 1 to 986) AUTHORS Knight,A., Sawchuk,S.J. and Yuri,T. Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., TITLE orders based on mitochondrial DNA Phylogenetic relationships among and within select avian JOURNAL SYSTEMATICS: 211-245; Academic Press (1997) (in) Mindell,D.F. (Ed.) ; AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 986) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83731 BASE COUNT 311 a 276 c 203 g 196 t 4227 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CGG-UUGGUU -U-UUGC-UA |AA-UU--CA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GUAAA---CG C|CCU-cgac -cgc-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---acca ccacc)---- 1261 ---------- ---------- --ag--gcc- -uuGAGGAGC |--------- GGGUAUCA-- 1321 -GGCACAC-- -----(ccaa gca------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUC-GC --|------- (-uaa--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-GU UAACAUUAAG C-AAUGAGU( ---------- ----GCAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CAA---- ---------- ---------- (------caa uucuccuaa- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -AAC-CCA-- 1981 AAUCA-ACCG Ucc-cauaaa ccCGGC|GUa aaGaGUGGu- -aaaau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----gccua -uccuaacua acuaag--ac -----|CAAA AUGCAA-CUa ----AGCU(G 2341 UCAUA)AGC| CCA------A GCUG-CACCU AAA------- -----cacac -cau(-uaag 2401 -)au|g---- ----aucuua ggaacuagc- gacug----- auuuaaccCC ACGAA-AGCC 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cu(uuac)c g---A-AGUA 2701 U-C|--C|GC C-AGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUACA--AU CG(AUAAUCC 2821 A--------- ----)CGAUU A-ACCCAACC ACCCCUUGCC ---------- ---------- 2881 (-------aa ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(G --AAU)GAG- -----(agc- 3181 aca)-----G C-AGUGGACA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----auacc- 3781 ---------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ug ca---)---- ---------- ---------- UAG-GGcac- 4021 ---------- ------ACGG --AAAGA-AG U-U(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) U-GC-U--UC -U--GGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- caaua-ga-- --)GCCCACU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaagcu--- 4381 -augu-ccca uauaacuaau accauuaaca -----cgcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------AA GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUAGAAUA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.bucci 5213 bp RNA RNA 02-JUL-1996 DEFINITION Mitochondrion Cygnus buccinator.; ribosomal RNA. ACCESSION U59667 KEYWORDS ribosomal RNA. SOURCE Mitochondrion Cygnus buccinator. ORGANISM Mitochondrion Cygnus buccinator. REFERENCE 1 (bases 1 to 988) AUTHORS Mindell,D.P., Knight,A., Baer,C. and Huddleston,C.J. TITLE rate and body temperature hypotheses Slow rates of molecular evolution in birds and the metabolic JOURNAL Mol. Biol. Evol. 13, 422-426 (1996) STANDARD No information REFERENCE 2 (bases 1 to 988) AUTHORS Mindell,D.P., Knight,A., Baer,C. and Huddleston,C.J. TITLE Direct Submission JOURNAL Submitted (31-MAY-1996) Dept. of Biology and Museum of Zoology, University of Michigan, 1109 Geddes Ave., Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U59667 BASE COUNT 320 a 268 c 197 g 203 t 4225 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGAAU 661 (UAG-)U-AC U|AACCU-UA CGG-UUGGUU -U-UUGC-UA |AA-UU--CA -UAC-A-UGC 721 --AGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GAUAAa--CG C|CUC-gacc -acc-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---cuca ccacc)---- 1261 ---------- ---------- --ua--ggc- cuugAGGAGC |--------- gGGUAUCA-- 1321 -GGCACAC-- -----(ccaa gua------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUC-GC --|------- (-uaa--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-GU UAACAUUAAG C-AAUGAGU( ---------- ----GCAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CAA---- ---------- ---------- (-caacucau uuccuuaa-- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -AAC-CCA-- 1981 AAUCA-ACCG Ccc--auaaa ccCGGC|GUA AAGAGUGGU- -aaaau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----gccua -uccuagcua acuaag--au -----|CAAA AUGCAA-CUA ----AGCU(G 2341 UCAUA)AGC| CCA------A GAUG-CACCU AAA------- -----cacac -cau(-uaag 2401 -)au|g---- ----aucuua ggaacuaac- gacug----- auuuaaacCC ACGAA-AGCC 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cu(uuac)c g---A-AGUA 2701 U-C|--C|GC C-AGAG-AAC UACGAGC(-- -ACAAAC)CC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- -CCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUACA--AU CG(AUAAUCC 2821 A--------- ----)CGAUU A-ACCCAACC ACCCCUUGCC ---------- ---------- 2881 (-------aa ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(G --AAU)GAG- -----(agc- 3181 aca)-----A C-AGUGGACA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----auccc- 3781 ---------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua ca---)---- ---------- ---------- UAG-GGCac- 4021 ---------- ------ACGG --AAAGA-AG U-U(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) U-GC-U--UC -U--GGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-GUGGGA(- caaua-ga-- --)GCCUACU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaagcu--- 4381 -auau-ccca cauaacuaau accauuaaca -----cgcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------AA GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUAGAAUA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.melan 5213 bp RNA RNA 03-AUG-1995 DEFINITION Mitochondrion Cygnus melancoryphus.; . ACCESSION S76217 KEYWORDS . SOURCE Mitochondrion Cygnus melancoryphus. ORGANISM Mitochondrion Cygnus melancoryphus. REFERENCE 1 (bases 1 to 989) AUTHORS Zimmer,R., Erdtmann,B., Thomas,W.K. and Quinn,T.W. TITLE Phylogenetic analysis of the Coscoroba coscoroba using mitochondrial srRNA gene sequences JOURNAL Mol. Phylogenet. Evol. 3 (2), 85-91 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: S76217 NCBI gi: 927600 BASE COUNT 309 a 277 c 208 g 195 t 4224 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---AAAGACU 661 (UAG-)U-CC U|GACCU-UA CGG-UUGGUU -U-UUGC-UA |AA-UA--CA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GUAAA---CG C|CCU-CGAU -CAC-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---acca ccccu)---- 1261 ---------- ---------- --AG--GCC- U-UGAGGAGC |--------- GGGUAUCA-- 1321 -GGCACAC-- -----(ccaa gca------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUC-GC --|------- (-uaa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAUU---C-A 1501 GCA|GUA-GU UAACAUUAAG C-AAUGAGU( ---------- ----GCAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CAA---- ---------- ---------- (-caaucccc auuuuaa--- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGG|--- -AAC-CCA-- 1981 AAUCA-ACCG UCc--uauua agCGGC|GUA AAGAGUGGua -a-gau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----gccua -uccuagcua acuaag--au -----|CAAA AUGCAA-CUA ----AGCU(G 2341 UCAUA)AGC| CCA------A GAUG-CACCU AAA------- -----cacac -cau(-uaag 2401 -)au|g---- ----aucuua ggaacuagc- gacug----- auuuaaacCC ACGAA-AGCC 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(cuac)c g---A-AGUA 2701 U-C|--C|GC C-AGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUACA--AU CG(AUGAUCC 2821 A--------- ----)CGAUU A-ACCCAACC ACCCCUUGCC ---------- ---------- 2881 (-------aa ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(G --AAU)GAG- -----(agc- 3181 aca)-----A C-AGUGGGCG CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----acccc- 3781 ---------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-G-GC-GG- -A-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ug ca---)---- ---------- ---------- UAG-GGCAC- 4021 ---------- ------ACGG --AAAGA-AG C-U(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) U-GC-U--UC -U--GGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- caaua-ga-- --)GCCCACU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaagcu--- 4381 acguc-cuac auauaacuaa uaccauuaac a----cgcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------AA GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUAGAAUA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.ery.1 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Coccyzus erythropthalmus.; . ACCESSION U83747 KEYWORDS . SOURCE Mitochondrion Coccyzus erythropthalmus. ORGANISM Mitochondrion Coccyzus erythropthalmus. REFERENCE 1 (bases 1 to 971) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 971) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83747 BASE COUNT 321 a 258 c 187 g 204 t 4243 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|GACCU-UA CAG-U-AGUU -U-UCGC-UA |AA-UA--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCGCCCCAGU GUAAA---UG C|CCU-Uaau --uu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---uacc a----)---- 1261 ---------- ---------- --ag--aua- a--aAGGAGC |--------- aGGUAUCA-- 1321 -GGCACGC-- -----(ccac gaacua---- ---------- ---------- ------)--- 1381 ---GC|---G GCCCA--AGA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CAU---- ---------- ---------- (-ccucgca- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -AGC-CCA-- 1981 AAUUA-ACUG U-------au caCGGC|GUA AAGAGUGG-- -cacac---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----auauu -aucacuuaa ccuagg--au -----|CAAA AUGUAA-CUG ----AGCC(G 2341 UCAUA)AGC| CAA------A GUUA-UAUCU AAA------- -----aucac -cgc(-uaaa 2401 -)gu|u---- ----auccua gcaaaccu-g agag-----a uca-caccCC ACUAA-AGCU 2461 A-GGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCU 2521 U--GGUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- acc(cuac)c a---A-AGUA 2701 C-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- UCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGCUA C-ACCCAACC ACCUCUAGCC ---------- ---------- 2881 (---c---aa ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GG-CA|G-CU CAC-|CUC(U --ACU)GAG- -----(aga- 3181 aca)-----A C-AGUGAGCA CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ccuccc- 3781 ---------G CUAGCA-AGA C-AGGUCAAG G|UAUA|GCU UAU------- ---------G 3841 A-G-GC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-cu aa---)---- ---------- ---------- UAG-AAaac- 4021 ---------- ------ACGG --AGAGA-GG U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) U-AU-C--UC -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GAAGGA(- uaaua-aa-- --)ACCUCCU U-uaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUC--GGCU 4261 CUGGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagccgc- 4381 aaauu-ucan uaacuaauaa -----cauca ---caagcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGAAUA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.D.arcua 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Dendrocygna arcuata.; . ACCESSION U83736 KEYWORDS . SOURCE Mitochondrion Dendrocygna arcuata. ORGANISM Mitochondrion Dendrocygna arcuata. REFERENCE 1 (bases 1 to 980) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 980) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83736 BASE COUNT 321 a 268 c 203 g 188 t 4233 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CGA-UUGGUU -U-UAGC-CA |AA-UA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCUCCAGU GUAAA---UG C|CCU-Uaac -cgc-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuccc c----)---- 1261 ---------- ---------- --cg--gcu- c-uaAGGAGC |--------- gGGCAUCA-- 1321 -GGCACAC-- -----(ccaa gca------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-gca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAau---C-A 1501 GCA|GUA-AU UAGUAUUAAG C-AAUGAGU( ---------- ----GAAA)A CUUGA-CUU| 1561 A|-GUUA-U- GG-UAA---- ---------- ---------- (--caacaa- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -AAC-CCA-- 1981 AAUCA-AUCG U----ccauc caCGGC|GUA AAGAGUGGg- -aaaau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----gccua -uccuauuaa acuaag--gc -----|CGAA AUGCAA-CUA ----AGCU(G 2341 UCGCA)AGC| UAA------A GAUG-CACCU AAG------- -----aacac -uau(-aaag 2401 -)au|g---- ----accuua gaaacua-gc ga-cug---- auuuaaacCC ACGAA-AGCC 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 C--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -ca(auac)c c---A-AGUA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -GCAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUA- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUA A-ACCCCACC ACCCCUUGCC ---------- ---------- 2881 (--ca---ac ac-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC CC-CA|G-CC CAC-|CUC(G --AAU)GAG- -----(agc- 3181 aca)-----A C-AGUGAGCA AAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- acccccccc- 3781 ---------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 G-G-GU-GG- -G-AGA--AA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ga---)---- ---------- ---------- UAG-AGcaca 4021 ---------- ------ACGG --AAAGA-AG U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) C-GC-U--UC -U--GGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-ACAGGA(- aaaua-ga-- --)GCCUAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 CUGGGG-UA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcc--- 4381 -auaa-aacu ccauaauuaa ugcgaucaa- ca---cgcug ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUAGAAUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.D.bicol 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Dendrocygna bicolor.; . ACCESSION U83737 KEYWORDS . SOURCE Mitochondrion Dendrocygna bicolor. ORGANISM Mitochondrion Dendrocygna bicolor. REFERENCE 1 (bases 1 to 984) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 984) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83737 BASE COUNT 322 a 264 c 203 g 195 t 4229 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CGA-UUGGUU -A-CAGC-CA |AA-UA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCUCCAGU GUAGA---UG C|CCU-Uaau -cgc-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuuuu cccc-)---- 1261 ---------- ---------- --cg--gcu- c-uaAGGAGC |--------- gGGCAUCA-- 1321 -GGCACAC-- -----(ccaa gca------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-gua--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UAAUAUUAAG C-AAUGAGU( ---------- ----GAAA)A CUUGA-CUU| 1561 A|-GUUA-U- GG-CAA---- ---------- ---------- (-caauuuaa ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -AAC-CCA-- 1981 AAUCA-AUCG U----cccuc caCGGC|GUA AAGAGUGGg- -aaaau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----gcuua -uccuaucaa acuaag--gc -----|CGAA AUGCAA-CUA ----AGCC(G 2341 UCGUA)AGC| UAA------A GAUG-CACUU AAG------- -----aacgc -uau(-aaag 2401 -)au|a---- ----accuua gaaaaua-gc ga-cca---- auuuaaacCC ACGAA-AGCC 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 C--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -ua(auac)c c---A-AGUA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -GCAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUA- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUG A-ACCCAACC ACCCCUUGCC ---------- ---------- 2881 (--ca---ac ac-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC CC-CA|G-CC CAC-|CUC(G A-gau)GAG- -----(agc- 3181 aca)-----A C-AGUGAGCA AAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --gucuccc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 G-G-GU-GG- -G-AGA--AA -UGGGCUACA UU--CUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ga---)---- ---------- ---------- CAG-AGcacc 4021 ---------- ------ACGA --AAAGA-AG C-G(------ ---------- ---------- 4081 ---------- ---------- ugaAA--C-) C-GC-U--UC -U--GGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-AUAGGA(- uaaua-ga-- --)GCCUAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 CUGGGG-UA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcu--- 4381 -auaa-aacc caauaauuaa uacaaccaa- ca---cgcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUAGAAUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.fisch 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Somateria fischeri.; . ACCESSION U83738 KEYWORDS . SOURCE Mitochondrion Somateria fischeri. ORGANISM Mitochondrion Somateria fischeri. REFERENCE 1 (bases 1 to 990) AUTHORS Knight,A., Sawchuk,S.J. and Yuri,T. Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., TITLE orders based on mitochondrial DNA Phylogenetic relationships among and within select avian JOURNAL SYSTEMATICS: 211-245; Academic Press (1997) (in) Mindell,D.F. (Ed.) ; AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 990) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83738 BASE COUNT 312 a 284 c 203 g 191 t 4223 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CAG-UUGGUU -U-UUGC-UA |GA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GUAAA---UG C|CCU-caac -agc-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(acccac- cccc-)---- 1261 ---------- ---------- --ag--gcc- u-uaAGGAGC |--------- aGGUAUCA-- 1321 -GGCACAC-- -----(ccaa gca------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-uaa--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-GU UAACAUUAAG C-AAUGAGU( ---------- ----GCAA)A CUCGA-CUU| 1561 A|-GUCA-U- AG-CAA---- ---------- ---------- (aucuccccc caa------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GAC-CCA-- 1981 AAUCA-ACUG Ucc-cauacg agCGGC|GUA AAGAGUGGu- -aaaau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----gcuua -uccuacuca acuaag--au -----|CAAA AUGCAA-CUA ----AGCU(G 2341 UCGCA)AGC| ACA------A GAUG-CACCU AAA------- -----cacac -cau(-caag 2401 -)au|g---- ----aucuua ggaacua-gc ga-uua---- auuuaaguCC ACGAA-AGCC 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(auac)c g---A-AGUA 2701 U-C|--C|GC C-AGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUGAUCC 2821 A--------- ----)CGAUC A-ACCCAACC GCCCCUUGCC ---------- ---------- 2881 (---a---au ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(G --AAU)GAG- -----(agc- 3181 cca)-----A C-AGUGGGCG CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----auccc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 G-G-GC-GG- -A-AGA--AA -UGGGCUACA UU--CCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-cg ca---)---- ---------- ---------- UAG-GGcaac 4021 ---------- ------ACGG --AAAGA-AG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) U-GC-U--UC -U--AGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-AUGGGA(- uaaua-ga-- --)GCCCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 CUAGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< ucaagcc--- 4381 -acac-cccc acauaacuaa uaccauuaau -----augcu c--------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUAGAAUA CU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.leuco 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Thalassornis leuconotus.; . ACCESSION U83739 KEYWORDS . SOURCE Mitochondrion Thalassornis leuconotus. ORGANISM Mitochondrion Thalassornis leuconotus. REFERENCE 1 (bases 1 to 984) AUTHORS Knight,A., Sawchuk,S.J. and Yuri,T. Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., TITLE orders based on mitochondrial DNA Phylogenetic relationships among and within select avian JOURNAL SYSTEMATICS: 211-245; Academic Press (1997) (in) Mindell,D.F. (Ed.) ; AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 984) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83739 BASE COUNT 317 a 275 c 201 g 191 t 4229 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CGA-UUGGCU -C-UCAC-CA |GA-UA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACUCCAGU GUAAA---UG C|CCU-Uaau uugc-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--accuu aauac)---- 1261 ---------- ---------- --ag--gcc- u-uaAGGAGC |--------- gGGUAUCA-- 1321 -GGCACAC-- -----(ccaa gca------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-aca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUGAGC( ---------- ----GAAA)G CUCGA-CUU| 1561 A|-GUCA-U- GG-UGA---- ---------- ---------- (cucccccaa ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AGUCA-AUCG U----caaau ucCGGC|GUA AAGAGUGGg- -aagau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----gccua -uccuaucaa acuaag--ac -----|CAAA AUGCAA-CUA ----AGCU(G 2341 UCAUA)AGC| CAA------A GAUG-CCCCU AAA------- -----cacac -cau(-aaac 2401 -)au|g---- ----gucuua ggacuua-gc ga-cca---- auuugaacCC ACGAA-AGCC 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCC 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -ca(guac)c g---A-AGUA 2701 U-C|--C|GC C-AGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUA- CCCCAAA-CC CACCUAGA|G GAGCCUGU-C |CUAUA--AC CG(AUAAUCC 2821 A--------- ----)CGAUA A-ACCCAACC GCCCCUUGCU ---------- ---------- 2881 (---c---ag ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(G --AAU)GAG- -----(agc- 3181 cca)-----A C-AGUGAGCG CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---accccc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 G-G-AC-GG- -A-AGA--GA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-cg -a---)---- ---------- ---------- UAG-AGcacu 4021 ---------- ------ACGA --AAAGA-AA U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--c-) C-AU-U--UC -U--GGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-AUAGAA(- uaaua-ac-- --)GCCUAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 CUGGGG-UA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaagcc--- 4381 -acga-ucuu acauaacuaa uaccgcucc- ag---ugcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUAGAAUA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.cornu 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Anhima cornuta.; . ACCESSION U83728 KEYWORDS . SOURCE Mitochondrion Anhima cornuta. ORGANISM Mitochondrion Anhima cornuta. REFERENCE 1 (bases 1 to 975) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 975) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83728 BASE COUNT 329 a 276 c 186 g 184 t 4238 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA UAG-UUAGUU -U-AUGC-CA |GA-CA--CA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCACCAGU GAAAA---UG C|CCC-uaac --ac-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-ggaacu accca)---- 1261 ---------- ---------- --ag--uca- ---aAGGaGC |--------- aGGUAUCA-- 1321 -GGCACAC-- -----(ccaa gca------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-GU UAACAUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GCCA-U- GG-CAA---- ---------- ---------- (-ccaa---- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACUA U------acu acCGGC|GUA AAGAGUGGu- -aauau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----gc-ua -ucccaac-a acuaag--au -----|CAAA GCACAA-CUG ----AGCC(G 2341 UCAUA)AGC| CCA------A GAUA-UGUcU AAA------- -----accac -ccu(-caag 2401 -)ac|g---- ----aucuua gcacccac-- gacca----- auuuaaauCC ACGAA-AGCU 2461 A-GGA---ca CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCA 2521 A--AGUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(aaac)c c---A-AGUA 2701 C-U|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUU C-ACCCAACC ACCCCUCGCC ---------- ---------- 2881 (-------aa ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUC(C --CCU)GAG- -----(agc- 3181 cca)-----A C-AGUGAGCU AAG-CAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --uac-ccc- 3781 ---------A CUAGCA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-cu ac---)---- ---------- ---------- UAG-AAcaaa 4021 cuuu------ ------ACGA --AAGGG-GA U-C(------ ---------- ---------- 4081 ---------- ---------- ugaaa--c-) C-AU-C--CC -U--AGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-GUAAGA(- caaua-ga-- --)GCCUACU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACC--GGCU 4261 CUGGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcu--- 4381 -aaau-agac cauauaaaua aucugccaaa c-----agcc a--------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGGAUA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.chava 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Chauna chavaria.; . ACCESSION U83729 KEYWORDS . SOURCE Mitochondrion Chauna chavaria. ORGANISM Mitochondrion Chauna chavaria. REFERENCE 1 (bases 1 to 977) AUTHORS Knight,A., Sawchuk,S.J. and Yuri,T. Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., TITLE orders based on mitochondrial DNA Phylogenetic relationships among and within select avian JOURNAL SYSTEMATICS: 211-245; Academic Press (1997) (in) Mindell,D.F. (Ed.) ; AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 977) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83729 BASE COUNT 323 a 276 c 194 g 184 t 4236 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CAG-UUAGUU -U-AUGC-CA |GA-CA--CA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGUACCAGU GAAAA---UG C|CCU-Uaac -acu-ug--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----gaa cccgc)---- 1261 ---------- ---------- --ca--agu- ca-aAGGAGC |--------- aGGCAUCA-- 1321 -GGCACAC-- -----(ccaa gua------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-uaa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-GU UAACAUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GCCA-U- GG-CUA---- ---------- ---------- (-ccuuaa-- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACCG U------acu acCGGC|GUA AAGAGUGGc- -aauau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-uua -ucc-caaug acuaag--au -----|CAAA GUACAA-CCA ----AGCU(G 2341 UCAUA)AGC| UCA------A GACG-UAUCU AAA------- -----gccac -ccu(-caag 2401 -)ac|g---- ----aucuua gcgccaac-- gacca----- auuuuaacCC ACGAA-AGCU 2461 A-GGA---cA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCC 2521 A--GGUA-CC |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(aaac)c c---A-AGUA 2701 C-C|--C|GC C-cGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUU A-ACCCAACC ACCCCUUGCC ---------- ---------- 2881 (-------aa ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUC(C --ACU)GAG- -----(agu- 3181 cca)-----A C-AGUGAGCU AAA-UAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---uacccc- 3781 ---------A CUAGCA-AGA C-AGGUCAAG G|UAUA|GCC CAC------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-cc gc---)---- ---------- ---------- UAG-AAcaaa 4021 ccuu------ ------ACGA --AAGGG-GG U-G(------ ---------- ---------- 4081 ---------- ---------- ugaaa--u-) C-AC-C--CC -U--AGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-GCAGGA(- caaua-gg-- --)GCCUACU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACC--GGCU 4261 CUGGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< auaagcu--- 4381 -aaac-agac cacauaaaua aucugccaaa c-----agcc a--------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGAAUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.semip 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Anseranas semipalmata.; . ACCESSION U83730 KEYWORDS . SOURCE Mitochondrion Anseranas semipalmata. ORGANISM Mitochondrion Anseranas semipalmata. REFERENCE 1 (bases 1 to 973) AUTHORS Knight,A., Sawchuk,S.J. and Yuri,T. Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., TITLE orders based on mitochondrial DNA Phylogenetic relationships among and within select avian JOURNAL SYSTEMATICS: 211-245; Academic Press (1997) (in) Mindell,D.F. (Ed.) ; AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 973) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83730 BASE COUNT 318 a 288 c 189 g 178 t 4240 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CAG-UUAGUU -U-UUGC-UA |GA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GUAAA---UG C|CCC-uau- -cgc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----ca ugua-)---- 1261 ---------- ---------- --ag--gac- c-uaAGGaGC |--------- aGGUAUCA-- 1321 -GGCACAC-- -----(ccaa gaa------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GCAA)A CUUGA-CUU| 1561 A|-GUCA-U- AG-CAA---- ---------- ---------- (-cuccccca a--------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCU|-GGU 1921 -AAA-C---C UUGU-G(-CC AGCCACC-GC -GGC-CA)-U ACAAGA|--- -AGC-CCA-- 1981 AAUUA-ACUG C------acu acCGGC|GUA AAGAGUGGc- -aacau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-aua -ucc-aagua acuagg--gu -----|CAAA GUACAG-CCA ----AGCU(G 2341 UCAUA)AGC| ACA------A GAUG-UACCU AAA------- -----gccac -ccu(-uaag 2401 -)ac|g---- ----auccua gcacca--ac gacca----- auuucaacCC ACGAA-AGCC 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 A--GAUG-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(ccac)c c---A-AGCA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCUCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUU C-ACCCGACC ACCCCUUGCC ---------- ---------- 2881 (-------aa ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUU(C --CCU)GAA- -----(agc- 3181 cca)-----A C-AGUGAGCU CAA-UAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caucc- 3781 ---------A CUAACA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 G-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ca---)---- ---------- ---------- CAG-AAaacu 4021 ---------- ------ACGA --AAAGA-GG U-G(------ ---------- ---------- 4081 ---------- ---------- ugaaa--c-) C-GC-C--CC -C--AGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-GCAGGA(- caaua-ga-- --)GCCCACU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACC--GGCC 4261 CUGAGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcc--- 4381 -acac-aacc auauaauuaa uaccccacca ac----agcu g--------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGAAUA CU-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.ciner 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Chaetura cinereiventris.; . ACCESSION U83762 KEYWORDS . SOURCE Mitochondrion Chaetura cinereiventris. ORGANISM Mitochondrion Chaetura cinereiventris. REFERENCE 1 (bases 1 to 971) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 971) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83762 BASE COUNT 312 a 273 c 187 g 199 t 4242 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGAGU 661 (UAG-)U-CC U|AGCCU-UA CCG-GUGAUU -C-UUGU-UA |AA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gUGCCCCAGU GUAAA---UG C|CCU-aauc -guc-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--acu-- -----)---- 1261 ---------- ---------- --aa--gac- c-ccAGGaGC |--------- aGGCAUCA-- 1321 -GGCACAC-- -----(ccac ugcc------ ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-cca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CAA---- ---------- ---------- (-uuucuuua g--------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -cAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -AAC-CCA-- 1981 AAUUA-ACCG U------gca uaCGGC|GUA AAGCGUGAu- -auuau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-cua -uc-gcuuca acuaag--au -----|CAAA AUGCAA-CCG ----AGCU(G 2341 UCAUA)AGC| ACA------U GAUG-CACCC AAA------- ------ccca -acc(-uaaa 2401 -)ga|cg--- ----aucuua gcccca--au ga-uua---- auuaaccaUC ACGAA-AGCU 2461 A-GAA---ca CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCC 2521 U--GAUA-CU |UC|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(cuac)u a---A-AGUA 2701 U-U|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GGGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCGACC ACUCCUUGCC ---------- ---------- 2881 (-------aa gg-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-UU CAC-|CUC(C --CCU)GAG- -----(aga- 3181 aca)-----A C-AGUGAACA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ccccc- 3781 ---------G UUAACA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 G-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- cac--)---- ---------- ---------- UAG-AAaacc 4021 ---------- ------ACGA --AAAGA-GG C-A(------ ---------- ---------- 4081 ---------- ---------- ugaaa--u-) C-AC-C--UC -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GAGAGG(a uaaua-aa-- --)GCCACCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 CUGGAG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaaagc--- 4381 uucaa-cuca ccauaccuaa uacccuag-- cu---agcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGCAUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.N.viola 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Nyctanassa violacea.; . ACCESSION U83713 KEYWORDS . SOURCE Mitochondrion Nyctanassa violacea. ORGANISM Mitochondrion Nyctanassa violacea. REFERENCE 1 (bases 1 to 974) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 974) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83713 BASE COUNT 305 a 265 c 205 g 199 t 4239 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGUAU 661 (UAG-)U-CC U|AACCU-UA CCG-UUGAUU -G-UUGC-UA |AA-UA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGUUCCAGU GUAAA---UG C|CCU-Cacc --cuguu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---aucu gacuc)---- 1261 ---------- ---------- --aa--ggc- a-g-AGGAGC |--------- gGGUAUCA-- 1321 -GGCACAC-- -----(ccau aagcg----- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-G- --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GAAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CAA---- ---------- ---------- (-cccaa--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACUU G-u--a-aca --CGGG|GUA AAGAGUGGc- -accau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-cua -ucacacc-a acuaag--au -----|CGAA AUGCAA-CUG ----AGCU(G 2341 UCAUA)AGC| CCA------A GCUG-CACUU AAG------- -----gucgu -ccu(-gaag 2401 -)ac|a---- ----aucuua gcgccugc-- gauug----- acaaccccCC ACGAA-AGCC 2461 G-AGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CCUAAA-UCU 2521 U--GAUA-CU |UG|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -gu(cuac)u a---A-AGUA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GGGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAACCC 2821 A--------- ----)CGAUG C-ACCCAACC GCUCCUUGCC ---------- ---------- 2881 (---a----g aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CU-(U --CCU)GAG- -----(agc- 3181 aca)-----G C-AGUAAGCG CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ccuaaccac- 3781 ---------G CUAGCA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 G-A-GC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a gc---)---- ---------- ---------- UAG-AAaacc 4021 u--------- ------ACGG --AAAGG-GA A-G(------ ---------- ---------- 4081 ---------- ---------- ugaaa--c-) C-UU-C--CC -U--AGAAG- -GCGGAUUUA 4141 G-U--AGUAA A-GCAGGA(- uaaua-aa-- --)GCCUACU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACU--GGCC 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcu--- 4381 -acua-cccc caauaacuaa uauaacaucc -----agcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGCAUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.albir 5213 bp RNA RNA 02-JAN-1999 DEFINITION Mitochondrion Anthracoceros albirostris.; . ACCESSION U89226 KEYWORDS . SOURCE Mitochondrion Anthracoceros albirostris. ORGANISM Mitochondrion Anthracoceros albirostris. REFERENCE 1 (bases 1 to 928) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 928) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (11-FEB-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89226 BASE COUNT 273 a 281 c 192 g 182 t 4285 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCA-UUAGUU -C-UUGC-UA |GG-UA--UA -UAC-A-UGC 721 -AAGC----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCGCCCCAGU GUAAA---UG C|CCA-Cggc --uc-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---uacc a----)---- 1261 ---------- ---------- --ag--gca- c--aAGGGGC |--------- aGGCAUCA-- 1321 -GGCACGC-- -----(cacc uuguc----- ---------- ---------- ------)--- 1381 ---GC|---a GCCUA--AGA C|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UGACAUUGAG C-UAUAAGC( ---------- ----GAAA)G CUUGA-CUC| 1561 A|-GCCA-U- AG-CAA---- ---------- ---------- (-ugcua--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -AAC-CCA-- 1981 AACUA-AUCG U--------a ugCGGC|GUA AAGAGUGG-- -uaccac--- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------ga-u -auccuguca acuagg--gc -----|CAAA AUGUUA-CUG ----AGCU(G 2341 UCAUA)AGC| CCA------U GUCA-CACAU AAG------- -----aucuc uagc(-uaaa 2401 -)au|g---- ----acccua gugcccgc-g acca-----a cua-aacuCC ACGAA-AGCC 2461 A-GGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCU 2521 U--GAUG-UU |U-|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- ucc(gcac)u a---A-AACA 2701 U-C|--C|GC C-CGAG-GAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCAACC CCUUCUUGCC ---------- ---------- 2881 (---aaag-- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(C --CUU)GAG- -----(agc- 3181 aca)-----A C-AGUGGGCC CAA-UAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ccccaac 3781 cccc-----A CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 A-A-GG-GG- -A-AGA--AA -UGGGCUACA UU--UCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au -a---)---- ---------- ---------- UAG-AAaacc 4021 cu-------- ------ACGA --AAAGG-GG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-UC-C--CC -U--GGAAG- -GUGGAUUUA 4141 G-C--AGUAA A-GugggA(- caauc-ac-- --)GCCCCCU U-uaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GUC--GGCC 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acgagcuac- 4381 uccuc-ucca uagauaauac -----acccg ---uuagcug ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GACG-AGG-U ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.vocif 5213 bp RNA RNA 02-JAN-1999 DEFINITION Mitochondrion Caprimulgus vociferus.; . ACCESSION U89214 KEYWORDS . SOURCE Mitochondrion Caprimulgus vociferus. ORGANISM Mitochondrion Caprimulgus vociferus. REFERENCE 1 (bases 1 to 926) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 926) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (11-FEB-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89214 BASE COUNT 308 a 258 c 175 g 185 t 4287 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUAAUU -U-CUGC-UA |AA-CA--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCGAUCCAGU GUAAA---UG C|CCU-Aaac --cu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---uacc a----)---- 1261 ---------- ---------- --ag--aca- a--aAGGAGC |--------- gGGCAUCA-- 1321 -GGCACAC-- -----(ccaa aguu------ ---------- ---------- ------)--- 1381 ---GU|---a GCCCA--AGA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG CAcu---C-A 1501 GCA|GUA-AU CAACAUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CAA---- ---------- ---------- (-ccaccca- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACUG U-------aa uaCGGC|GUA AAGAGUGG-- -ca-ug---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----auguu -aucacaaca acuaag--au -----|CGAA AUACAA-UUG ----AGCU(G 2341 UCAUA)AGC| UUA------A AAUG-UACUU AAG------- -----gcccc cccu(-uaac 2401 -)ac|g---- ----aucuca gcaccaau-g aacaa----u uuc-acuaCC ACGAA-AGCU 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CAUAAA-UCU 2521 C--GACA-CU |U-|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- guu(uaac)c a---A-AGUG 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUC C-ACCCAACC GCUUCUUGCC ---------- ---------- 2881 (---agaa-- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(A -UUGA)GAG- -----(-ca- 3181 ca-)-----A C-AGUGGGCU AAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ccuacc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCU CAU------- ---------G 3841 A-A-GC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ca---)---- ---------- ---------- UAG-AAaacc 4021 c--------- ------ACGA --ACAGG-GG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-GC-C--CC -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GAGGGA(- uaauu-aa-- --)GCCCCCU U-uaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GAC--GGCA 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaaagcua- 4381 ucaaa-cccu auaacuuaau a----cauaa ---ucagcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GACG-AGG-U ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.min.1 5213 bp RNA RNA 02-JUL-1996 DEFINITION Mitochondrion Chordeiles minor.; ribosomal RNA. ACCESSION U59669 KEYWORDS ribosomal RNA. SOURCE Mitochondrion Chordeiles minor. ORGANISM Mitochondrion Chordeiles minor. REFERENCE 1 (bases 1 to 974) AUTHORS Mindell,D.P., Knight,A., Baer,C. and Huddleston,C.J. TITLE rate and body temperature hypotheses Slow rates of molecular evolution in birds and the metabolic JOURNAL Mol. Biol. Evol. 13, 422-426 (1996) STANDARD No information REFERENCE 2 (bases 1 to 974) AUTHORS Mindell,D.P., Knight,A., Baer,C. and Huddleston,C.J. TITLE Direct Submission JOURNAL Submitted (31-MAY-1996) Dept. of Biology and Museum of Zoology, University of Michigan, 1109 Geddes Ave., Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U59669 BASE COUNT 322 a 264 c 190 g 192 t 4245 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUAAUU -C-UUGC-UA |GA-CA--UA -UAC-A-UGC 721 --AGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACUCCAGU GAUAAa--UG C|CCU-aga- -acu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----ua auaag)---- 1261 ---------- ---------- --ag--gca- a--AAGGAGC |--------- aGGCAUCA-- 1321 -GGCGCAC-- -----(ucaa aacu------ ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GCAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CAA---- ---------- ---------- (--------- -cacaua--- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC|-GGU 1921 -AAA-U---U UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACCG U-------aa caCGGC|GUA AAGAGUGGU- -aucau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g--au -aucacaaca acuaag--au -----|CAAA ACACAG-UUG ----AGCU(G 2341 UCAUA)AGC| UUA------A AAUG-UGUCU AAG------- -----accac -ccu(-caan 2401 -)ac|g---- ----accuua guaccaau-- gacuaa---- uuunacagCC ACGAA-AGCC 2461 A-GGA---NA CANANUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCC 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cu(uaac)c a---A-AGUA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- UCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA U-ACCCAACC GCCCCUUGCC ---------- ---------- 2881 (-------aa ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(A ---UU)GAG- -----(agu- 3181 aua)-----A C-AGUGAGCC AAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -cccccacc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 G-G-GC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a cc---)---- ---------- ---------- UAG-AAaacc 4021 n--------- ------ACGG --AAAGG-GA C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) U-GC-C--CC -U--GGAAG- --CGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- caauc-aa-- --)GCCCCCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GAC--GGCA 4261 CUGGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aacaaagcug 4381 ccuaa-gccc cau-aauuca auacaccaac -u---agcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------GA GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGCAUA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.min.2 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Chordeiles minor.; . ACCESSION U83761 KEYWORDS . SOURCE Mitochondrion Chordeiles minor. ORGANISM Mitochondrion Chordeiles minor. REFERENCE 1 (bases 1 to 974) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 974) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83761 BASE COUNT 322 a 264 c 190 g 192 t 4245 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUAAUU -C-UUGC-UA |GA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACUCCAGU GUAAA---uG C|CCU-aga- -acu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----ua au--a)---- 1261 ---------- ---------- --ag--agg- caaAAGGAGC |--------- AGGCAUCA-- 1321 -GGCGCAC-- -----(ucaa aacu------ ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( cacg-)--GG UAuu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GCAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CAA---- ---------- ---------- (--------- -cacaua--- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC|-GGU 1921 -AAA-U---U UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACCG U-------aa caCGGC|GUa aaGaGUGGu- -aucau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g--au -aucacaaca acuaag--au -----|CAAA ACACAG-UUg ----AGCU(G 2341 UCAUA)AGC| UUA------A AAUG-UGUCU AAG------- -----accac -ccu(-caan 2401 -)ac|g---- ----accuua guaccaau-- gacuaa---- uuunacagCC ACGAA-AGCC 2461 A-GGA---na cAnanUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCC 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cu(uaac)c a---A-AGUA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- UCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA U-ACCCAACC GCCCCUUGCC ---------- ---------- 2881 (-------aa ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(A ---UU)GAG- -----(agu- 3181 aua)-----A C-AGUGAGCC AAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -cccccacc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 G-G-GC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a cc---)---- ---------- ---------- UAG-AAaacc 4021 n--------- ------ACGG --AAAGG-GA C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) U-GC-C--CC -U--GGAAG- --CGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- caauc-aa-- --)GCCCCCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GAC--GGCA 4261 CUGGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aacaaagcug 4381 ccuaa-gccc cau-aauuca auacaccaac -u---agcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------GA GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGCAUA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.N.mcleo 5213 bp RNA RNA 02-JAN-1999 DEFINITION Mitochondrion Nyctiphrynus mcleodii.; . ACCESSION U89215 KEYWORDS . SOURCE Mitochondrion Nyctiphrynus mcleodii. ORGANISM Mitochondrion Nyctiphrynus mcleodii. REFERENCE 1 (bases 1 to 931) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 931) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (11-FEB-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89215 BASE COUNT 308 a 266 c 171 g 186 t 4282 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUAAUU -C-CCGC-UA |AA-CA--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCGACCCAGU GUAAA---UG C|CCU-Aaac --cu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---uacc a----)---- 1261 ---------- ---------- --ag--aac- aa-AaggaGC |--------- gGGUAUCA-- 1321 -GGCACAC-- -----(ccaa caccac---- ---------- ---------- ------)--- 1381 ---GU|---a GCCCA--AGA C|ACCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-AU CAACAUUAAG C-AAUAAGU( ---------- ----GCAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CGG---- ---------- ---------- (-cccccca- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GGC-CCA-- 1981 AAUUA-ACUG U-------aa uaCGGC|GUA AAGAGUGG-- -uaca----- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----auguu -aucacguua acuaag--au -----|CGAA AUACAA-UUG ----AGCU(G 2341 UCAUA)AGC| UUA------A AAUG-UACUU AAG------- ------acca cccu(-caac 2401 -)ac|g---- ----aucuca gcacuaau-g a--ucu---a uuc-accaCC ACGAA-AGCU 2461 A-GGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCC 2521 U--GAUG-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cu(uaac)c a---A-AGUA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUU C-ACCCAACC GCUUCUUGCc ---------- ---------- 2881 (---aaag-- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CUC(A u-UGA)GAG- -----(cau- 3181 a--)-----A C-AGUGAGCU AAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cccuaaa 3781 cc-------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 A-A-GC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-c- ca---)---- ---------- ---------- UAG-AAaac- 4021 ---------- ------ACGG --aCGGG-GG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAuc--) G-GC-C--CC -C--AGAAG- -UCGGAUUUA 4141 G-C--AGUAA A-GUGAGA(- uaauc-aa-- --)GCCCCCU U-uaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GAC--GGCA 4261 CUGGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaaagcuc- 4381 cacca-aacc cuauaacuua aua--cauua ---auuacca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GACG-AGG-U ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.crist 5213 bp RNA RNA 27-SEP-1994 DEFINITION Mitochondrion Aethia cristatella.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aethia cristatella. ORGANISM Mitochondrion Aethia cristatella. REFERENCE 1 (bases 1 to 500) AUTHORS Johansen,S. TITLE Direct Submission JOURNAL Submitted (08-NOV-1993) to the EMBL/GenBank/DDBJ databases. S. Johansen, Institute of Medical Biology, University of Troms, MH- Bldg Breivika, 9037 Troms, NORWAY STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X76357 BASE COUNT 153 a 141 c 101 g 105 t 4713 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~U-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACUG U-------ua ugCGGC|GUA AAGAGUGGug -cuaug---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------au -aucauaaca acuagg--au -----|ugaa augcaa-cuA ----GGCU(G 2341 UCAUA)AGC| UCA------a gaug-cacuu aag------- -----gccuc -ccu(-uaag 2401 -)au|g---- ----auccua gcguu-ccc- gauugauu-- uaa---ccCC ACGAA-AGCU 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-UUAU| -GCCU-AGC- CCUAAA-UCU 2521 U--GAUG-CU |UG|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(guac)c a---A-AGCA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAACCC 2821 A--------- ----)CGAUC C-ACCCGACC ACCCCUUGCC ---------- ---------- 2881 (---a---aa -g-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-UU CAC-|CUC(c --ccu)GAG- -----(agc- 3181 ccc)----ac --aGUGAACA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ccaau-c 3781 uc-------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aa---)---- ---------- ---------- UAG-AGua~~ 4021 ~~~~~~---~ ~~~~~~~~~~ --~~~~~~~- ~-~(~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~) ~~~~~-~--~ ~-~-~~~~~~ -~~~~~~~~~ 4141 ~~~--~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.pusil 5213 bp RNA RNA 27-SEP-1994 DEFINITION Mitochondrion Aethia pusilla.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aethia pusilla. ORGANISM Mitochondrion Aethia pusilla. REFERENCE 1 (bases 1 to 500) AUTHORS Johansen,S. TITLE Direct Submission JOURNAL Johansen, Institute of Medical Biology, University of Troms, MH- Bldg Breivika, 9037 Troms, NORWAY Submitted (08-NOV-1993) to the EMBL/GenBank/DDBJ databases. S. STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X76355 BASE COUNT 153 a 141 c 101 g 105 t 4713 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~U-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACUG U-------ca ugCGGC|GUA AAGAGUGGug -cuaug---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------au -aucauaaca acuagg--au -----|ugaa augcaa-cuA ----GGCU(G 2341 UCAUA)AGC| UCA------a ggug-caccu aag------- -----acccc -ccu(-uaag 2401 -)au|g---- ----auccua gcacu-ccc- gauugauu-- uaa---ccCC ACGAA-AGCU 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-UUAU| -GCCU-AGC- CCUAAA-UCU 2521 U--GAUG-CU |UG|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cu(guac)u a---A-AGCA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUC C-ACCCGACC ACCCCUUGCU ---------- ---------- 2881 (---a---aa -g-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-UU CAC-|CUC(a --ccu)GAG- -----(agc- 3181 ccc)----gc --aGUGAACA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cucgc-c 3781 cc-------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCU UAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ag---)---- ---------- ---------- UAG-AAua~~ 4021 ~~~~~~---~ ~~~~~~~~~~ --~~~~~~~- ~-~(~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~) ~~~~~-~--~ ~-~-~~~~~~ -~~~~~~~~~ 4141 ~~~--~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.pygma 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aethia pygmaea. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aethia pygmaea. ORGANISM Mitochondrion Aethia pygmaea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X76356 ID STAPSSRR standard; DNA; ORG; 500 BP. XX AC X76356; XX DT 27-SEP-1994 (Rel. 41, Created) DT 29-SEP-1994 (Rel. 41, Last updated, Version 3) XX DE A.pygmaea mitochondria rRNA (small subunit) gene. XX KW small subunit ribosomal RNA gene. XX OS Aethia pygmaea OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; OC Neornithes; Neognathae; Charadriiformes; Alcidae. OC Mitochondrion XX RN [1] RL Johansen S.; RL ; RL Submitted (08-NOV-1993) to the EMBL/GenBank/DDBJ databases. RL S. Johansen, Institute of Medical Biology, University of Troms, MH- RL Bldg Breivika, 9037 Troms, NORWAY RL RN [2] RP 1-500 RL Moum T., Johansen S., Erikstad K.E., Piatt J.F.; RL "Phylogeny and evolution of the auks (subfamily Alcidae) based on RL mitochondrial DNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 0:0-0(0). XX FH Key Location/Qualifiers FH FT source 1..500 FT /organism="Aethia pygmaea" FT /mitochondrion FT rRNA <1..>500 FT /product="small subunit ribosomal RNA" FT /partial XX SQ Sequence 500 BP; 154 A; 139 C; 100 G; 107 T; 0 other; BASE COUNT 154 a 139 c 100 g 107 t 4713 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~U-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACUG U-------ua ugCGGC|GUA AAGAGUGGug -cuaug---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------au -aucauaaca acuagg--au -----|ugaa augcaa-cuA ----GGCU(G 2341 UCAUA)AGC| UCA------a gaug-uacuu aag------- -----gcccu -ccu(-uaag 2401 -)au|g---- ----auccua gcacu-ccu- gauugauu-- uaa---ccCC ACGAA-AGCU 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-UUAU| -GCCU-AGC- CCUAAA-UCU 2521 U--GAUG-CU |UG|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(auac)c a---A-AGCA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUC C-ACCCGACC ACCCCUUGCC ---------- ---------- 2881 (---a---ga -g-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-UU CAC-|CUU(c --ccu)GAG- -----(agc- 3181 ccc)----gc --aGUGAACA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuagc-c 3781 cc-------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAG-AAua~~ 4021 ~~~~~~---~ ~~~~~~~~~~ --~~~~~~~- ~-~(~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~) ~~~~~-~--~ ~-~-~~~~~~ -~~~~~~~~~ 4141 ~~~--~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.torda 5213 bp RNA RNA 27-SEP-1994 DEFINITION Mitochondrion Alca torda.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Alca torda. ORGANISM Mitochondrion Alca torda. REFERENCE 1 (bases 1 to 500) AUTHORS Johansen,S. TITLE Direct Submission JOURNAL Submitted (08-NOV-1993) to the EMBL/GenBank/DDBJ databases. S. Johansen, Institute of Medical Biology, University of Troms, MH- Bldg Breivika, 9037 Troms, NORWAY STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X76347 BASE COUNT 159 a 137 c 98 g 106 t 4713 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~U-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACCG U-------au guCGGC|GUA AAGAGUGGua -cuacg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------au -aucaugaua acuagg--au -----|ugaa augcgg-cuA ----GGCU(G 2341 UCAUA)AGC| UCA------a gacg-cacuu aaa------- -----gccau -cuu(-uaag 2401 -)au|g---- ----auccua gcauc-uuu- gaucaauu-- uaa---ucCC ACGAA-AGCU 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-UUAU| -GCCU-AGC- CCUAAA-UCU 2521 U--GAUG-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(acac)c a---A-AGCA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CUCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUU C-ACCCGACC ACCCCUUGCC ---------- ---------- 2881 (---a---ga -g-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUC(c --ccu)GAG- -----(agc- 3181 ccu)----ac --aGUGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuaaa-c 3781 cc-------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aa---)---- ---------- ---------- UAG-AAaa~~ 4021 ~~~~~~---~ ~~~~~~~~~~ --~~~~~~~- ~-~(~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~) ~~~~~-~--~ ~-~-~~~~~~ -~~~~~~~~~ 4141 ~~~--~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.alle 5213 bp RNA RNA 27-SEP-1994 DEFINITION Mitochondrion Alle alle.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Alle alle. ORGANISM Mitochondrion Alle alle. REFERENCE 1 (bases 1 to 501) AUTHORS Johansen,S. TITLE Direct Submission JOURNAL Johansen, Institute of Medical Biology, University of Troms, MH- Bldg Breivika, 9037 Troms, NORWAY Submitted (08-NOV-1993) to the EMBL/GenBank/DDBJ databases. S. STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X76346 BASE COUNT 161 a 140 c 96 g 104 t 4712 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~U-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACUG U------aua ucCGGC|GUA AAGAGUGGua -ccacg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------au -aucaugaua acuagg--au -----|ugaa augcag-cuA ----GGCU(G 2341 UCAUA)AGC| UCA------a gaug-cacuu aaa------- -----gccac -cuu(-uaag 2401 -)au|g---- ----auccua gcacc-uuu- gauuaauu-- uaa---ccCC ACGAA-AGCU 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-UUAU| -GCCU-AGC- CCUAAA-UCU 2521 U--GAUG-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(acac)c a---A-AGCA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUU C-ACCCGACC ACCCCUUGCC ---------- ---------- 2881 (---a---ga -g-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(c --ccu)GAG- -----(agu- 3181 ccu)----ac --aGUGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuaaa-c 3781 cc-------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAG-AAaa~~ 4021 ~~~~~~---~ ~~~~~~~~~~ --~~~~~~-~ ~-~(~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~) ~~~~~-~--~ ~-~-~~~~~~ -~~~~~~~~~ 4141 ~~~--~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Br.brev 5213 bp RNA RNA 27-SEP-1994 DEFINITION Mitochondrion Brachyramphus brevirostris.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Brachyramphus brevirostris. ORGANISM Mitochondrion Brachyramphus brevirostris. REFERENCE 1 (bases 1 to 500) AUTHORS Johansen,S. TITLE Direct Submission JOURNAL MH- Bldg Breivika, 9037 Troms, NORWAY Submitted (08-NOV-1993) to the EMBL/GenBank/DDBJ databases. S. Johansen, Institute of Medical Biology, University of Troms, STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X76351 BASE COUNT 157 a 138 c 100 g 105 t 4713 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~U-UA)-C ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACCG U--------a uaCGGC|GUA AAGAGUGGca -ccaug---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------cu -aucauagca gcuagg--au -----|ugaa augcaa-cuA ----AGCU(G 2341 UCAUA)AGC| cca------a gaug-uacuu aag------- -----gccac -cuu(-uaag 2401 -)au|g---- ----auccua gcguugccu- gauuaauu-- uaa---caCC ACGAA-AGCU 2461 A-GGG---UA CAAACUGGG( AUUAGAUAC) CCCA-UUAU| -GCCU-AGC- CCUAAA-UCU 2521 U--GAUG-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(auac)c a---A-AGCA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAACCC 2821 A--------- ----)CGAUU C-ACCCGACC ACCCCUUGUC ---------- ---------- 2881 (---a---au -g-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(c --ccu)GAG- -----(agc- 3181 cuu)----ac --aGUGGGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuaaa-c 3781 cc-------G CUAACA-AGA C-AGGUCGAG G|UAUA|GCC UAU------- ---------G 3841 G-G-GC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAG-AAaa~~ 4021 ~~~~~~---~ ~~~~~~~~~~ --~~~~~~~- ~-~(~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~) ~~~~~-~--~ ~-~-~~~~~~ -~~~~~~~~~ 4141 ~~~--~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.B.marmo 5213 bp RNA RNA 27-SEP-1994 DEFINITION Mitochondrion Brachyramphus marmoratus.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Brachyramphus marmoratus. ORGANISM Mitochondrion Brachyramphus marmoratus. REFERENCE 1 (bases 1 to 500) AUTHORS Johansen,S. TITLE Direct Submission JOURNAL Johansen, Institute of Medical Biology, University of Troms, MH- Bldg Breivika, 9037 Troms, NORWAY Submitted (08-NOV-1993) to the EMBL/GenBank/DDBJ databases. S. STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X76352 BASE COUNT 160 a 144 c 98 g 98 t 4713 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~U-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACCG U--------a aaCGGC|GUA AAGAGUGGua -ccaug---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------au -aucauagca gcuagg--ac -----|ugaa gugcaa-cuA ----AGCU(G 2341 UCAUA)AGC| uca------a gaug-uaccu aag------- -----gccac -cuu(-uaag 2401 -)au|g---- ----auccua gcguugccu- gacuaauu-- uaa---ccCC ACGAA-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-UUAU| -GCCU-AGC- CCUAAA-UCU 2521 U--GAUG-CU |UG|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(auac)c a---A-AGCA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAACCC 2821 A--------- ----)CGAUU C-ACCCGACC GCCCCUUGCC ---------- ---------- 2881 (---a---au -g-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(u --ccu)GAG- -----(agc- 3181 ccu)----ac --aGUGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuaaa-c 3781 cc-------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 G-A-GC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aa---)---- ---------- ---------- UAG-AAaa~~ 4021 ~~~~~~---~ ~~~~~~~~~~ --~~~~~~~- ~-~(~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~) ~~~~~-~--~ ~-~-~~~~~~ -~~~~~~~~~ 4141 ~~~--~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.colum 5213 bp RNA RNA 27-SEP-1994 DEFINITION Mitochondrion Cepphus columba.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Cepphus columba. ORGANISM Mitochondrion Cepphus columba. REFERENCE 1 (bases 1 to 500) AUTHORS Johansen,S. TITLE Direct Submission JOURNAL MH- Bldg Breivika, 9037 Troms, NORWAY Submitted (08-NOV-1993) to the EMBL/GenBank/DDBJ databases. S. Johansen, Institute of Medical Biology, University of Troms, STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X76349 BASE COUNT 162 a 138 c 95 g 105 t 4713 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~U-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACCG U--------a uaCGGC|GUA AAGAGUGGua -caaua---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------cu -aucauagca acuagg--au -----|uaaa augcaa-cuA ----GGCU(G 2341 UCACA)AGC| uca------a gaug-caccu aag------- -----aucac -ccc(-caag 2401 -)au|g---- ----auccua gcauu-ccu- gauuaauu-- uaa---ccCC ACGAA-AGCU 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-UUAU| -GCCU-AGC- CCUAAA-UCU 2521 U--GAUG-CU |UG|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(uuac)u a---A-AGCA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CUCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUU C-ACCCAACC ACCUCUUGCU ---------- ---------- 2881 (---a---ga -g-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(c --ccu)GAG- -----(agu- 3181 ccc)----ac --aGUGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuacaaa 3781 cc-------G UUAGUA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ga---)---- ---------- ---------- UAG-AAaa~~ 4021 ~~~~~~---~ ~~~~~~~~~~ --~~~~~~~- ~-~(~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~) ~~~~~-~--~ ~-~-~~~~~~ -~~~~~~~~~ 4141 ~~~--~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.gryll 5213 bp RNA RNA 27-SEP-1994 DEFINITION Mitochondrion Cepphus grylle.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Cepphus grylle. ORGANISM Mitochondrion Cepphus grylle. REFERENCE 1 (bases 1 to 499) AUTHORS Johansen,S. TITLE Direct Submission JOURNAL Submitted (08-NOV-1993) to the EMBL/GenBank/DDBJ databases. S. Johansen, Institute of Medical Biology, University of Troms, MH- Bldg Breivika, 9037 Troms, NORWAY STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X76348 BASE COUNT 160 a 133 c 97 g 109 t 4714 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~U-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACCG U--------a uaCGGC|GUA AAGAGUGGua -caaug---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------cu -aucauagca acuagg--au -----|uaaa augcag-cuA ----GGCU(G 2341 UCAUA)AGC| uca------a gaug-caccu aag------- -----aucac -cuc(-uaag 2401 -)au|g---- ----auccua gcauu-ucu- gauuaauu-- uaa---ccCC ACGAA-AGCU 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-UUAU| -GCCU-AGC- CCUAAA-UCU 2521 U--GAUG-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(uuac)u a---A-AGCA 2701 U-C|--C|GC C-UGGG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CUCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUU C-ACCCAACC ACCUCUUGCU ---------- ---------- 2881 (---a---ga -g-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(c --ucu)GAG- -----(agu- 3181 ccc)----ac --aGUGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuaaa-a 3781 cc-------G UUAGCA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ga---)---- ---------- ---------- UAG-AAaa~~ 4021 ~~~~~~---~ ~~~~~~~~~~ --~~~~~~~- ~-~(~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~) ~~~~~-~--~ ~-~-~~~~~~ -~~~~~~~~~ 4141 ~~~--~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.F.arcti 5213 bp RNA RNA 27-SEP-1994 DEFINITION Mitochondrion Fratercula arctica.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Fratercula arctica. ORGANISM Mitochondrion Fratercula arctica. REFERENCE 1 (bases 1 to 500) AUTHORS Johansen,S. TITLE Direct Submission JOURNAL Johansen, Institute of Medical Biology, University of Troms, MH- Bldg Breivika, 9037 Troms, NORWAY Submitted (08-NOV-1993) to the EMBL/GenBank/DDBJ databases. S. STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X76358 BASE COUNT 164 a 139 c 94 g 103 t 4713 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~U-CA)-C ACAAGA|--- -AAC-CCA-- 1981 AAUUA-ACCG U--------a ugCGGC|GUA AAGAGUGGug -ccaug---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------au -accauaaca acuagg--au -----|ugaa auguaa-cuA ----GGCU(G 2341 UCAUA)AGC| uca------a gaua-uaucu aag------- -----aucac -ccu(-uaag 2401 -)au|g---- ----auccua guacc-ucu- gauuaauu-- caa---ccCC ACGAA-AGCU 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-UUAU| -GCCU-AGC- CCUAAA-UCU 2521 U--GAUG-UU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(acac)c a---A-AGCA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUU C-ACCCAACC ACCCCUCGCC ---------- ---------- 2881 (---a---aa ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUU(c --ccu)GAG- -----(agu- 3181 ccc)----ac --aGUGAGCA UAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ccaag-u 3781 cc-------G CUAGUA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAG-AAaa~~ 4021 ~~~~~~---~ ~~~~~~~~~~ --~~~~~~~- ~-~(~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~) ~~~~~-~--~ ~-~-~~~~~~ -~~~~~~~~~ 4141 ~~~--~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.F.corni 5213 bp RNA RNA 27-SEP-1994 DEFINITION Mitochondrion Fratercula corniculata.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Fratercula corniculata. ORGANISM Mitochondrion Fratercula corniculata. REFERENCE 1 (bases 1 to 500) AUTHORS Johansen,S. TITLE Direct Submission JOURNAL Johansen, Institute of Medical Biology, University of Troms, MH- Bldg Breivika, 9037 Troms, NORWAY Submitted (08-NOV-1993) to the EMBL/GenBank/DDBJ databases. S. STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X76359 BASE COUNT 160 a 143 c 98 g 99 t 4713 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~U-CA)-C ACAAGA|--- -AAC-CCA-- 1981 AAUUA-ACCG U--------a ugCGGC|GUA AAGAGUGGug -ccaug---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------au -accauaaca acuagg--au -----|ugaa auguaa-cuA ----GGCU(G 2341 UCAUA)AGC| uca------a gaua-caccu aag------- -----aucgc -ccu(-uaag 2401 -)au|g---- ----auccua guacc-ucu- gauuaauu-- caa---ccCC ACGAA-AGCU 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-UUAU| -GCCU-AGC- CCUAAA-UCU 2521 U--GAUG-CU |UG|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(auac)c a---A-AGCA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUU C-ACCCAACC ACCCCUCGCC ---------- ---------- 2881 (---a---ga ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUU(c --ccu)GAG- -----(agu- 3181 ccc)----ac --aGUGAGCA UAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ccaag-u 3781 cc-------G CUAGUA-AGA C-AGGUCGAG G|UAUA|GCC CAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAG-AAaa~~ 4021 ~~~~~~---~ ~~~~~~~~~~ --~~~~~~~- ~-~(~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~) ~~~~~-~--~ ~-~-~~~~~~ -~~~~~~~~~ 4141 ~~~--~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.L.cirrh 5213 bp RNA RNA 27-SEP-1994 DEFINITION Mitochondrion Lunda cirrhata.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Lunda cirrhata. ORGANISM Mitochondrion Lunda cirrhata. REFERENCE 1 (bases 1 to 499) AUTHORS Johansen,S. TITLE Direct Submission JOURNAL Submitted (08-NOV-1993) to the EMBL/GenBank/DDBJ databases. S. Johansen, Institute of Medical Biology, University of Troms, MH- Bldg Breivika, 9037 Troms, NORWAY STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X76360 BASE COUNT 163 a 143 c 94 g 99 t 4714 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~U-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACCG U--------a uaCGGC|GUA AAGAGUGGug -ccaug---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------au -accauaaca acuagg--au -----|ugaa guguaa-cuA ----GGCU(G 2341 UCAUA)AGC| uca------a gaua-uacuu aag------- -----aucac -ccu(-caag 2401 -)ac|g---- ----auccua gcguc-ucu- gauuaauu-- caa---ccCC ACGAA-AGCU 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-UUAU| -GCCU-AGC- CCUAAA-UCU 2521 U--GAUG-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(acac)c a---A-AGCA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUU C-ACCCAACC ACCCCUCGCC ---------- ---------- 2881 (---a---ga -g-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUU(c --ccu)GAA- -----(agu- 3181 ccc)----ac --aGUGAGCA UAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ccaaa-u 3781 cc-------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAG-AAaa~~ 4021 ~~~~~~---~ ~~~~~~~~~~ --~~~~~~~- ~-~(~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~) ~~~~~-~--~ ~-~-~~~~~~ -~~~~~~~~~ 4141 ~~~--~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.aleut 5213 bp RNA RNA 27-SEP-1994 DEFINITION Mitochondrion Ptychoramphus aleuticus.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Ptychoramphus aleuticus. ORGANISM Mitochondrion Ptychoramphus aleuticus. REFERENCE 1 (bases 1 to 500) AUTHORS Johansen,S. TITLE Direct Submission JOURNAL Johansen, Institute of Medical Biology, University of Troms, MH- Bldg Breivika, 9037 Troms, NORWAY Submitted (08-NOV-1993) to the EMBL/GenBank/DDBJ databases. S. STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X76353 BASE COUNT 157 a 138 c 98 g 107 t 4713 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~U-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACUG U-------ua ugCGGC|GUA AAGAGUGGcg -ccaug---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------au -aucauaaca acuagg--au -----|ugaa augcaa-cuA ----GGCU(G 2341 UCAUA)AGC| uca------a gaug-uacuu aag------- -----accac -ccu(-uaag 2401 -)au|g---- ----auccua gcauu-ucc- gauugauu-- uaa---cuCC ACGAA-AGCU 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-UUAU| -GCCU-AGC- CCUAAA-UCU 2521 U--GAUG-CU |UG|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(guac)u a---A-AGCA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUC C-ACCCGACC ACCCCUUGCC ---------- ---------- 2881 (---a---aa -a-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-UU CAC-|CUC(c --ucu)GAG- -----(agc- 3181 ccc)----ac --aGUGAACA UAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ccaac-c 3781 cc-------G CUAGCA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ag---)---- ---------- ---------- UAG-AAua~~ 4021 ~~~~~~---~ ~~~~~~~~~~ --~~~~~~~- ~-~(~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~) ~~~~~-~--~ ~-~-~~~~~~ -~~~~~~~~~ 4141 ~~~--~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.antiq 5213 bp RNA RNA 27-SEP-1994 DEFINITION Mitochondrion Synthliboramphus antiquus.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Synthliboramphus antiquus. ORGANISM Mitochondrion Synthliboramphus antiquus. REFERENCE 1 (bases 1 to 499) AUTHORS Johansen,S. TITLE Direct Submission JOURNAL Johansen, Institute of Medical Biology, University of Troms, MH- Bldg Breivika, 9037 Troms, NORWAY Submitted (08-NOV-1993) to the EMBL/GenBank/DDBJ databases. S. STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X76350 BASE COUNT 161 a 143 c 95 g 100 t 4714 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~U-CA)-U ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACCG U--------a ugCGGC|GUA AAGAGUGGuc -ccaug---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------au -aucacagca acuagg--ac -----|ugaa augcaa-cuA ----GGCU(G 2341 UCAUA)AGC| uca------a gaug-cacuu aaa------- -----gccac -cuu(-uaaa 2401 -)au|g---- ----auccua gcauc-ucu- gauuaauu-- uaa---cuCC ACGAA-AGCU 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-UUAU| -GCCU-AGC- CCUAAA-UCU 2521 C--GAUG-UU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cu(guac)c a---A-AACA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAACCC 2821 A--------- ----)CGAUC C-ACCCGACC ACCCCUCGCC ---------- ---------- 2881 (---a---aa -g-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(c --ccu)GAG- -----(agc- 3181 ccc)----ac --aGUGAGCA UAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ccaaa-c 3781 cc-------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aa---)---- ---------- ---------- UAG-AAaa~~ 4021 ~~~~~~---~ ~~~~~~~~~~ --~~~~~~~- ~-~(~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~) ~~~~~-~--~ ~-~-~~~~~~ -~~~~~~~~~ 4141 ~~~--~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.U.aal.1 5213 bp RNA RNA 27-SEP-1994 DEFINITION Mitochondrion Uria aalge.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Uria aalge. ORGANISM Mitochondrion Uria aalge. REFERENCE 1 (bases 1 to 499) AUTHORS Johansen,S. TITLE Direct Submission JOURNAL MH- Bldg Breivika, 9037 Troms, NORWAY Submitted (08-NOV-1993) to the EMBL/GenBank/DDBJ databases. S. Johansen, Institute of Medical Biology, University of Troms, STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X76435 BASE COUNT 159 a 136 c 98 g 106 t 4714 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~U-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AGUUA-ACAG U-------au guCGGC|GUA AAGAGUGGua -cuaug---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------au -aucauugca acuagg--au -----|ugaa augcag-cuA ----AGCU(G 2341 UCAUA)AGC| cca------a gacg-cacuu aaa------- -----gucac -cuu(-caag 2401 -)au|g---- ----auccua gcgcc-ucu- gauuaauu-- uaa---ccCC ACGAA-AGCU 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-UUAU| -GCCU-AGC- CCUAAA-UCU 2521 U--GAUG-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(acac)u a---A-AGCA 2701 U-C|--C|GC C-GGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUU U-ACCCAACC ACCUCUCGCC ---------- ---------- 2881 (---a---aa -g-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(c --ucu)GAG- -----(agc- 3181 ccu)----ac --aGUGGGCA UAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ccaa--c 3781 cc-------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAG-AAaa~~ 4021 ~~~~~~---~ ~~~~~~~~~~ --~~~~~~~- ~-~(~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~) ~~~~~-~--~ ~-~-~~~~~~ -~~~~~~~~~ 4141 ~~~--~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.U.aal.2 5213 bp RNA RNA 27-SEP-1994 DEFINITION Mitochondrion Uria aalge.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Uria aalge. ORGANISM Mitochondrion Uria aalge. REFERENCE 1 (bases 1 to 499) AUTHORS Johansen,S. TITLE Direct Submission JOURNAL Johansen, Institute of Medical Biology, University of Troms, MH- Bldg Breivika, 9037 Troms, NORWAY Submitted (08-NOV-1993) to the EMBL/GenBank/DDBJ databases. S. STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X76345 BASE COUNT 161 a 141 c 97 g 100 t 4714 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~U-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACAG U-------ac auCGGC|GUA AAGAGUGGua -cuaug---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------gu -aucauaaca acuagg--au -----|ugaa augcag-cuA ----AGCU(G 2341 UCAUA)AGC| cca------a gacg-cacuu aaa------- -----gucac -cuu(-caag 2401 -)au|g---- ----auccua gcacc-ucu- gauuaauu-- uaa---ccCC ACGAA-AGCU 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-UUAU| -GCCU-AGC- CCUAAA-UCU 2521 U--GAUG-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(acac)c a---A-AGCA 2701 U-C|--C|GC C-GGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUU C-ACCCAACC ACCCCUCGCC ---------- ---------- 2881 (---a---aa -g-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(u --ccu)GAG- -----(agu- 3181 ccu)----ac --aGUGGGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ccag--c 3781 cc-------G CUAGUA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ga---)---- ---------- ---------- UAG-AAaa~~ 4021 ~~~~~~---~ ~~~~~~~~~~ --~~~~~~~- ~-~(~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~) ~~~~~-~--~ ~-~-~~~~~~ -~~~~~~~~~ 4141 ~~~--~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.L.canus 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Larus canus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Larus canus. ORGANISM Mitochondrion Larus canus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X76361 ID STLCSSRRN standard; DNA; ORG; 498 BP. XX AC X76361; XX DT 27-SEP-1994 (Rel. 41, Created) DT 29-SEP-1994 (Rel. 41, Last updated, Version 3) XX DE L.canus mitochondria rRNA (small subunit) gene. XX KW small subunit ribosomal RNA gene. XX OS Larus canus OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; OC Neornithes; Neognathae; Charadriiformes; Laridae. OC Mitochondrion XX RN [1] RP 1-498 RL Johansen S.; RL ; RL Submitted (08-NOV-1993) to the EMBL/GenBank/DDBJ databases. RL S. Johansen, Institute of Medical Biology, University of Troms, MH- RL Bldg Breivika, 9037 Troms, NORWAY RL RN [2] RP 1-498 RL Moum T., Johansen S., Erikstad K.E., Piatt J.F.; RL "Phylogeny and evolution of the auks (subfamily Alcidae) based on RL mitochondrial DNA sequences"; RL Proc. Natl. Acad. Sci. U.S.A. 0:0-0(0). XX FH Key Location/Qualifiers FH FT source 1..498 FT /organism="Larus canus" FT /mitochondrion FT rRNA <1..>498 FT /product="small subunit ribosomal RNA" FT /partial XX SQ Sequence 498 BP; 159 A; 139 C; 98 G; 102 T; 0 other; BASE COUNT 159 a 139 c 98 g 102 t 4715 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~U-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACCG U--------a uaCGGC|GUA AAGAGUGGca -cuaug---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------au -aucacagug acuagg--au -----|uaag augcaa-cuA ----AGCU(G 2341 UCAUA)AGC| cca------a ggug-uacuu aag------- -----aucac -ccu(-uaag 2401 -)au|g---- ----auccua guacu-ucu- gauugauu-- uaa---ccCC ACGAA-AGCU 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCU 2521 C--GAUG-CU |UG|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(guac)c a---A-AGCA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUU C-ACCCGACC ACCUCUCGCC ---------- ---------- 2881 (---a---aa -g-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUU(c --ccu)GAA- -----(agc- 3181 cca)----au --aGUGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ccaa--c 3781 cu-------G CUAGUA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 A-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ga---)---- ---------- ---------- UAG-AAaa~~ 4021 ~~~~~~---~ ~~~~~~~~~~ --~~~~~~~~ ~-~(~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~) ~~~~~-~--~ ~-~-~~~~~~ -~~~~~~~~~ 4141 ~~~--~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.L.domin 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Larus dominicanus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Larus dominicanus. ORGANISM Mitochondrion Larus dominicanus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X82525 ID MLD12SRNA standard; DNA; ORG; 372 BP. XX AC X82525; XX DT 09-NOV-1994 (Rel. 41, Created) DT 09-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE L.dominincanus mitochondrion 12S rRNA gene XX KW 12S rRNA gene; mitochondrial ribosomal rna. XX OS Larus dominicanus OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; OC Neornithes; Neognathae; Charadriiformes; Laridae. XX OG Mitochondrion XX RN [1] RP 1-372 RA Wallis G.P.; RT ; RL Submitted (04-NOV-1994) to the EMBL/GenBank/DDBJ databases. RL G.P. Wallis, University of Otago, Dept of Zoology, PO Box 56, RL Dunedin, NEW ZEALAND XX RN [2] RP 1-372 RA Paterson A.M., Gray R.D., Wallis G.P.; RT "Petrels, penguins and parsimony: Does cladistic analysis of RT behaviour reflect seabird phylogeny?"; RL Evolution 0:0-0(0). XX FH Key Location/Qualifiers FH FT source 1..372 FT /organism="Larus dominicanus" FT /isolate="birds 1 & 3" FT /map="nucleotide number 1770" FT /mitochondrion FT rRNA 1..372 FT /product="12S mitochondrial ribosomal RNA" XX SQ Sequence 372 BP; 112 A; 107 C; 85 G; 67 T; 1 other; BASE COUNT 112 a 107 c 85 g 67 t 4842 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--NAUG-CU |UG|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(guac)c a---A-AGCA 2701 U-C|--C|GC C-cGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUU C-ACCCGACC ACCUCUCGCC ---------- ---------- 2881 (-------aa ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUU(C --CCU)GAA- -----(agc- 3181 cca)-----A U-AGUGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --cuaaccu- 3781 ---------G CUAGUA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 A-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ga---)---- ---------- ---------- UAG-AAaacc 4021 c--------- ------ACGA --AAGGG-GG U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) A-GC-C--CC -C--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- caaua-aa-- --)GCCCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GUU--GGCC 4261 CUGGGG-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.marit 5213 bp RNA RNA 27-SEP-1994 DEFINITION Mitochondrion Calidris maritima.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Calidris maritima. ORGANISM Mitochondrion Calidris maritima. REFERENCE 1 (bases 1 to 501) AUTHORS Johansen,S. TITLE Direct Submission JOURNAL Johansen, Institute of Medical Biology, University of Troms, MH- Bldg Breivika, 9037 Troms, NORWAY Submitted (08-NOV-1993) to the EMBL/GenBank/DDBJ databases. S. STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X76362 BASE COUNT 159 a 145 c 95 g 102 t 4712 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~U-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACCG U--------a aaCGGC|GUA AAGAGUGGua -ucaug---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------uu -aucucaaca acuaag--ac -----|caaa guacaa-cuG ----AGCU(G 2341 UCAUA)AGC| CUA------a gaug-uaccu aag------- -----acucc -ccu(-uaaa 2401 -)ac|g---- ----aucuua gcgcc-uuu- gauuaauu-- uaa---uuCC ACGAA-AGCU 2461 A-AGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-UCU 2521 U--GAUG-CU |CU|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ --------cu ccu(gcac)u ----A-AGCA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGUUA C-ACCCGACC ACCCCUUGCC ---------- ---------- 2881 (---a---ga -g-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(c --ccu)GAG- -----(agu- 3181 cca)----ac --aGUGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ccaaa-c 3781 cc-------G CUAAUA-AGA C-AGGUCGAG G|UAUA|GCC CAC------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g ga---)---- ---------- ---------- UAG-AAac~~ 4021 ~~~~~~---~ ~~~~~~~~~~ --~~~~~~~- ~-~(~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~) ~~~~~-~--~ ~-~-~~~~~~ -~~~~~~~~~ 4141 ~~~--~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.minor 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Scolopax minor.; . ACCESSION U83744 KEYWORDS . SOURCE Mitochondrion Scolopax minor. ORGANISM Mitochondrion Scolopax minor. REFERENCE 1 (bases 1 to 977) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 977) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83744 BASE COUNT 323 a 246 c 188 g 220 t 4236 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUAAUU -U-UUGC-UA |AA-UA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACUCCAGU GUAAA---UG C|CCA-ucaa -ccu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----u-- aua-a)---- 1261 ---------- ---------- --ag--aaa- a--aAGGAGC |--------- gGGUAUCA-- 1321 -GGCACAC-- -----(ccaa guu------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|ACCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCUC--( CACA-)--GG UAuu---C-A 1501 GCA|GUA-AU CAAUAUUAAG C-AAUGAGU( ---------- ----GCAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CAA---- ---------- ---------- (-ccuua--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -AAC-CCA-- 1981 AAUUA-ACCG U--------a uaCGGC|GUA AAGAGUGGa- -acuau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-cua -ucaua-aua acuaag--ac -----|CAAA GUACAA-CUA ----AGCU(G 2341 UCAUA)AGC| UCA------A GGUG-UAUAU AAG------- ----cccuuc -uac(uuaaa 2401 -)au|g---- ----aucuua guaccu--aa gauaa----- auuuaaucCC ACGAA-AGCU 2461 A-AGA---cA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CAUAAA-UCU 2521 U--GAUA-UU |UU|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- cuc(auac)u a---A-AAUA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAACCC 2821 A--------- ----)CGUUA C-ACCCGACC GCCCCUUGCC ---------- ---------- 2881 (---a---ga gc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUU(U --CCU)GAG- -----(agg- 3181 ccu)-----A A-AGUGAGCA CAA-UAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- uuacagucc- 3781 ---------A CUAAUA-AGA C-AGGUCGAG G|UAUA|GCU AAC------- ---------G 3841 G-G-GC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ac aa---)---- ---------- ---------- UAG-ACcaag 4021 cu-------- ------ACGG --AGGGG-GA C-A(------ ---------- ---------- 4081 ---------- ---------- ugaaa--c-) C-GU-C--CC -C--CGAAG- -GUGGAUUUA 4141 G-C--AGUAA A-GUGAGA(- uaaugcaa-- --)GCUCACU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACC--GGCC 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaggcc--- 4381 auaau-ccua cuauaucuaa uacaagccaa a-----agcc a--------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGCAUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.rex 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Balaeniceps rex. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Balaeniceps rex. ORGANISM Mitochondrion Balaeniceps rex. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L33368 ID MIBRZBR standard; circular DNA; ORG; 367 BP. XX AC L33368; XX DT 25-NOV-1994 (Rel. 41, Created) DT 25-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE Balaeniceps rex mitochondrial 12S ribosomal RNA (12S rRNA) gene, 3' DE end. XX KW 12S ribosomal RNA; 12S rRNA. XX OS Balaeniceps rex OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; OC Neornithes; Neognathae; Ciconiiformes; Balaenicipitidae; OC Balaeniceps. XX OG Mitochondrion XX RN [1] RP 1-367 RA Hedges S.B., Sibley C.G.; RT "Molecules vs. morphology in avian evolution: The case of the RT 'pelecaniform' birds"; RL Proc. Natl. Acad. Sci. U.S.A. 91:9861-9865(1994). XX CC NCBI gi: 559017 XX FH Key Location/Qualifiers FH FT source 1..367 FT /organism="Balaeniceps rex" FT /mitochondrion FT /sequenced_mol="DNA" FT rRNA 1..367 FT /partial FT /gene="12S rRNA" FT /note="putative" FT /product="12S ribosomal RNA" XX SQ Sequence 367 BP; 108 A; 116 C; 79 G; 64 T; 0 other; BASE COUNT 108 a 116 c 79 g 64 t 4846 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~C- CCUAAA-UCU 2521 U--GAUA-UC |CG|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(cuac)c c---G-GAUA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAACCC 2821 C--------- ----)CGAUU C-ACCCGACC GCUUCUUGCC ---------- ---------- 2881 (---a---ca -g-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUC(C --UCU)GAG- -----(agc- 3181 aca)-----g c-AGUGAGCA CAA-UCGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ccuaaccac- 3781 ---------G CUAGCA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 A-A-GC-GG- -G-AGU--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ua---)---- ---------- ---------- UAG-AAaacu 4021 c--------- ------ACGA --AAAGG-GG U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) C-AC-C--CC -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCAGGA(- caaua-ga-- --)GCCCCC~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 4981 ~~~~~~~-~~ ~~~--~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.G.calif 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Gymnogyps californianus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Gymnogyps californianus. ORGANISM Mitochondrion Gymnogyps californianus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L33378 ID MIGCZG standard; circular DNA; ORG; 368 BP. XX AC L33378; XX DT 25-NOV-1994 (Rel. 41, Created) DT 25-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE Gymnogyps californianus mitochondrial 12S ribosomal RNA (12S rRNA) DE gene, 3' end. XX KW 12S ribosomal RNA; 12S rRNA. XX OS Gymnogyps californianus OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; OC Neornithes; Neognathae; Falconiformes; Cathartidae; Gymnogyps. XX OG Mitochondrion XX RN [1] RP 1-368 RA Hedges S.B., Sibley C.G.; RT "Molecules vs. morphology in avian evolution: The case of the RT 'pelecaniform' birds"; RL Proc. Natl. Acad. Sci. U.S.A. 91:9861-9865(1994). XX CC NCBI gi: 559033 XX FH Key Location/Qualifiers FH FT source 1..368 FT /organism="Gymnogyps californianus" FT /mitochondrion FT /sequenced_mol="DNA" FT rRNA <1..368 FT /gene="12S rRNA" FT /note="putative" FT /product="12S ribosomal RNA" XX SQ Sequence 368 BP; 117 A; 106 C; 76 G; 69 T; 0 other; BASE COUNT 117 a 106 c 76 g 69 t 4845 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~C- CCUAAA-UCU 2521 U--GAUG-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -ac(ucac)c a---A-AGCA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA U-ACCCGACC ACUCCUUGCC ---------- ---------- 2881 (-------ag ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-UU CAC-|CUU(U --CCU)GAG- -----(agc- 3181 aca)-----G C-AGUGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- cucaacuuc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 G-A-GC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ac---)---- ---------- ---------- UAG-AAaacu 4021 cc-------- ------ACGA --AAAGG-GG U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) C-AC-C--CC -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- uaaua-aa-- --)GCCCUC~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.V.gryph 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Vultar gryphys. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Vultar gryphys. ORGANISM Mitochondrion Vultar gryphys. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L33396 LOCUS VUTMTZG 368 bp DNA circular VRT 11-MAY-1995 DEFINITION Vultur gryphus mitochondrial 12S ribosomal RNA (12S rRNA) gene, 3' end. ACCESSION L33396 KEYWORDS 12S rRNA; 12S ribosomal RNA. SOURCE Mitochondrion Vultur gryphus DNA. ORGANISM Mitochondrion Vultur gryphus Eukaryota; Animalia; Chordata; Vertebrata; Aves; Ciconiiformes; Ciconioidea; Ciconiidae; Cathartinae. REFERENCE 1 (bases 1 to 368) AUTHORS Hedges,S.B. and Sibley,C.G. TITLE Molecules vs. morphology in avian evolution: the case of the 'pelecaniform' birds JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91 (21), 9861-9865 (1994) MEDLINE 95024061 COMMENT NCBI gi: 559258 FEATURES Location/Qualifiers source 1..368 /organism="Mitochondrion Vultur gryphus" /mitochondrion /sequenced_mol="DNA" rRNA <1..368 /gene="12S rRNA" /note="putative" /product="12S ribosomal RNA" BASE COUNT 115 a 110 c 76 g 67 t ORIGIN BASE COUNT 115 a 110 c 76 g 67 t 4845 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~C- CCUAAA-UCU 2521 C--GAUG-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -ac(ucac)c a---A-AGCA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUACCCC 2821 A--------- ----)CGAUA U-ACCCGACC GCUCCUUGCC ---------- ---------- 2881 (-------ag ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-UU CAC-|CUU(U --CCU)GAG- -----(agc- 3181 aca)-----A C-AGUGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- cucaaccuc- 3781 ---------G CUAAUA-CGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 G-A-GC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a au---)---- ---------- ---------- UAG-AAaa-c 4021 ucc------- ------ACGA --AAAGG-GG C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) C-AC-C--CC -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GUGGGA(- caaua-aa-- --)GCCCCC~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.ameri 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Mycteria americana.; . ACCESSION U83712 KEYWORDS . SOURCE Mitochondrion Mycteria americana. ORGANISM Mitochondrion Mycteria americana. REFERENCE 1 (bases 1 to 975) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 975) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83712 BASE COUNT 304 a 283 c 195 g 193 t 4238 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUAACU -C-UCGC-UA |AA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUCCCAGU GUAAA---UG C|CCC-Agau --uu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----u-a cccu-)---- 1261 ---------- ---------- --ag--aug- --aaGGGAGC |--------- aGGUAUCA-- 1321 -GGCACAC-- -----(ccac uguu------ ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|ACCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CGA---- ---------- ---------- (cacccca-- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -AAC-CCA-- 1981 AGUUA-ACUG C-a----aca --CGGC|GUA AAGAGUGGu- -accau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----gc-ug -ucacaac-a acuagg--au -----|UAAA GUGCAC-CUA ----AGCU(G 2341 UCAUA)AGC| CCA------A GAUG-CACCU AAA------- -----gccac -ccu(-caag 2401 -)ac|g---- ----auccua gcaccuac-- gacgga---- uuaggcccCC ACGAA-AGCU 2461 A-AGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-UCU 2521 C--GGUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(cuac)c a---A-AGUA 2701 C-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCAACC GUCCCUUGCC ---------- ---------- 2881 (---a----g ug-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUC(U --CCU)GAG- -----(agc- 3181 cca)-----G C-AGUGAGCA CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --cacaccc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-G-CC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a uaa--)---- ---------- ---------- UAG-AAaauc 4021 u--------- ------ACGA --AAAGG-GG U-G(------ ---------- ---------- 4081 ---------- ---------- ugaaa--c-) C-AC-C--UC -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GGGGGA(- uaaua-aa-- --)GCCCCCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- aCUU--GGCC 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< auaagcu--- 4381 -acua-aacu acuauaacua auaucuuccc c----agcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGCACA UA-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.coron 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Pterocles coronatus.; . ACCESSION U83745 KEYWORDS . SOURCE Mitochondrion Pterocles coronatus. ORGANISM Mitochondrion Pterocles coronatus. REFERENCE 1 (bases 1 to 972) AUTHORS Knight,A., Sawchuk,S.J. and Yuri,T. Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., TITLE orders based on mitochondrial DNA Phylogenetic relationships among and within select avian JOURNAL SYSTEMATICS: 211-245; Academic Press (1997) (in) Mindell,D.F. (Ed.) ; AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 972) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83745 BASE COUNT 312 a 252 c 190 g 218 t 4241 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CUA-UUAAUU -C-UUGC-CA |GA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GUAAA---UG C|CCU-ugaa u-uc-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---uacu acuua)---- 1261 ---------- ---------- --ag-cga-- ---aAGGAGC |--------- aGGCAUCA-- 1321 -GGCGCAC-- -----(uaau uaaauu---- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GU --|------- (-uca--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GCAA)A CUUGA-CUU| 1561 A|-GUCA-U- GG-CAA---- ---------- ---------- (-cauuua-- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AAUUA-AUUG U--------a ccCGGC|GUA AAGAGUGGu- -accau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-cua -uc-auguua acuagg--au -----|CAAA GUAUAA-UUA ----AGCU(G 2341 UCAUA)AGC| CCA------U GAUA-UACCU AAG------- -----accuu -ccu(-uaaa 2401 -)au|g---- ----agccua gcaccaau-- gauca----- auua-aacCC ACGAA-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-UCC 2521 U--GAUA-CC |AA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cu(uaac)u a---A-GGUA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GGGGGU- AUCCCAA-CC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAACCC 2821 G--------- ----)CGAUA C-ACCCAACC GCUCCUUGCC ---------- ---------- 2881 (-------aa ga-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUC(C --CCU)GAG- -----(aga- 3181 uca)-----A C-AGUGGGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -ucuuaccc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUU|GCU AAU------- ---------G 3841 G-A-CC-GG- -A-AGA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ac---)---- ---------- ---------- UAG-AAgacu 4021 ---------- ------ACGA --AAAGA-GG U-G(------ ---------- ---------- 4081 ---------- ---------- uguaa--au) C-AC-U--UC -U--GGAAG- -GUGGAUUUA 4141 G-C--AGUAA A-GCAGGA(- uaaua-au-- --)GCCUGCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACU--GGCC 4261 CUGGGG-UA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< ucaagcc--- 4381 -gcaa-uccc aauaaauaau auaccucuu- ------ggcu a--------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-C AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGCACA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.adeli 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Pygoscelis adelie. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Pygoscelis adelie. ORGANISM Mitochondrion Pygoscelis adelie. REFERENCE 1 (bases 1 to 972) AUTHORS Hedges, S.B. and Sibley, C.G. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L33392 LOCUS PGGMTZG 369 bp DNA circular VRT 11-MAY-1995 DEFINITION Pygoscelis adeliae mitochondrial 12S ribosomal RNA (12S rRNA) gene, 3' end. ACCESSION L33392 KEYWORDS 12S rRNA; 12S ribosomal RNA. SOURCE Mitochondrion Pygoscelis adeliae DNA. ORGANISM Mitochondrion Pygoscelis adelie Eukaryota; Animalia; Chordata; Vertebrata; Aves; Ciconiiformes; Ciconii; Spheniscidae. REFERENCE 1 (bases 1 to 369) AUTHORS Hedges,S.B. and Sibley,C.G. TITLE Molecules vs. morphology in avian evolution: the case of the 'pelecaniform' birds JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91 (21), 9861-9865 (1994) MEDLINE 95024061 COMMENT NCBI gi: 559231 FEATURES Location/Qualifiers source 1..369 /organism="Mitochondrion Pygoscelis adeliae" /mitochondrion /sequenced_mol="DNA" rRNA <1..369 /gene="12S rRNA" /note="putative" /product="12S ribosomal RNA" BASE COUNT 116 a 106 c 79 g 68 t ORIGIN BASE COUNT 116 a 106 c 79 g 68 t 4844 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~C- CCUAAA-UCU 2521 U--GAUA-CC |U-|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------u cca(ucac)c a---A-AGUA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAGA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUG C-ACCCGACC ACUCCUUGCC ---------- ---------- 2881 (-------aa ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUC(G --CCU)GAA- -----(aga- 3181 aca)-----G C-AGUGAGCA UAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- cccaacccc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AUaacc 4021 uc-------- ------ACGG --AAAGG-GA C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) U-GC-C--CC -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA G-GUGGGA(- caaua-aa-- --)GCCCAC~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.coliu 5213 bp RNA RNA 14-SEP-1998 DEFINITION Mitochondrion Colius colius.; . ACCESSION U89216 KEYWORDS . SOURCE Mitochondrion Colius colius. ORGANISM Mitochondrion Colius colius. REFERENCE 1 (bases 1 to 931) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level Phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 931) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (01-SEP-1998) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89216 BASE COUNT 318 a 252 c 166 g 195 t 4282 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CAG-UUAAUU -C-UUAC-CA |AA-CA--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCACUCCAGU GUAAA---UG C|CCC-CACA --AC---UUC ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---gccg -----)---- 1261 ---------- ---------- --aa--gac- a--aAGGAGC |--------- uGGUAUCA-- 1321 -GGCACAC-- -----(ccac -cg-ua---- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AAA C|ACCUU-GC --|------- (-uuc--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GUUA-U- GG-UAA---- ---------- ---------- (-auaauca- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -AAC-CCA-- 1981 AAUUA-ACUG U-------au -gCGGC|GUA AAGAGUGGua -caacg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------cu -aucacacua acuaag--gc -----|UGAA ACAUAA-CCA ----AGCC(G 2341 UCAUA)AGC| CAA------A GUUA-UUCCU AAG------- -----cacac -ccu(-aaaa 2401 -)ac|g---- ----acccua guacucac-g auag-----a ccu-acuaCC ACGAA-AGCU 2461 A-UGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CAUAAA-UCC 2521 A--GAUC-CU |CC|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(ucac)c u---G-AGUA 2701 U-C|--C|GC C-CGAG-AAU UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCUAACC ACUUCUAGCC ---------- ---------- 2881 (---g---ca aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CGC-|CUU(A --AUU)GAG- -----(agu- 3181 aca)-----G C-AGCAAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-c acuacacgc- 3781 ---------G CUAAAA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 A-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAG-AAcacu 4021 ---------- -----aACGA --AAAAG-GG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) U-AC-C--CC -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-UAAAGA(- uaaua-au-- --)GCUUUUU U-uaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GAU--GGCC 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< auaugc-ua- 4381 cccaa-caau gauacuuaau a-caaauaac ca---gc-ua u--------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAAG-AGG-C ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~-------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.leuco 5213 bp RNA RNA 14-SEP-1998 DEFINITION Mitochondrion Colius leucocephalus.; . ACCESSION U89217 KEYWORDS . SOURCE Mitochondrion Colius leucocephalus. ORGANISM Mitochondrion Colius leucocephalus. REFERENCE 1 (bases 1 to 932) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level Phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 932) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (01-SEP-1998) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89217 BASE COUNT 315 a 255 c 163 g 199 t 4281 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CAG-UUAGUU -C-UUAC-CA |GA-CA--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCACUCCAGU GUAAA---UG C|CCU-AAUC --CC---UUC ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---acca -----)---- 1261 ---------- ---------- --aa--gac- a--gAGGAGC |--------- uGGUAUCA-- 1321 -GGCACAC-- -----(cca- ucgca----- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AAA C|ACCUU-GC --|------- (-uuc--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UCuu---C-A 1501 GCA|GUA-AU UGACAUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GCCA-U- GG-UAA---- ---------- ---------- (-acaacua- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACUG U-------ac c-CGGC|GUA AAGAGUGGca -c-aau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------auu -aucgcacua acuaag--gc -----|UAAA ACAUAA-CUA ----AGCU(G 2341 UCAUA)AGC| CAA------A GUUA-CUCCC AAA------- -----cccac -ccu(-aaaa 2401 -)au|g---- ----accuua gua-uuccag auca-----a cuc-auugCC ACGAA-AGCU 2461 A-GGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CAUAAA-UCC 2521 A--GAUU-CU |CC|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cu(uuac)u u---G-AGCA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--ACACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCAACC ACUUCUAGCC ---------- ---------- 2881 (---a---aa a--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UGC-|CUC(A --AUU)GAA- -----(agu- 3181 gca)-----A C-AGCAAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)ua ucccaccac- 3781 ---------G CUAAAA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 A-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-c- aa---)---- ---------- ---------- UAG-AGuacu 4021 ---------- -----aACGA --AAAUG-GG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) U-UC-C--CC -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAAAGA(- caaua-ga-- --)GCUUUUU U-uaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -gau--ggcc 4261 cUGGAG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< auaugc-uu- 4381 ccaau-caau aauaauuaaa acaaauauuc ca---gc-ua u--------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAAG-AGG-C ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.stria 5213 bp RNA RNA 14-SEP-1998 DEFINITION Mitochondrion Colius striatus.; . ACCESSION U89218 KEYWORDS . SOURCE Mitochondrion Colius striatus. ORGANISM Mitochondrion Colius striatus. REFERENCE 1 (bases 1 to 928) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level Phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 928) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (01-SEP-1998) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89218 BASE COUNT 328 a 246 c 159 g 195 t 4285 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CAG-UUAGUU -U-UUAC-CA |AG-UA--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCACUCCAGU GUAAA---UG C|CCU-AUAA --CU---U-C ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---acca -----)---- 1261 ---------- ---------- --aa--gac- a--aAGGAGC |--------- uGGUAUCA-- 1321 -GGCACAC-- -----(ccac -ca-ua---- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AAA C|ACCUU-GC --|------- (-uuu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GCUA-U- GG-UAA---- ---------- ---------- (-acaacca- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -AAC-CCA-- 1981 AAUUA-ACUG U-------au -aCGGC|GUA AAGAGUGGca -c-aac---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------aau -aucaaacua acuagg--gc -----|UAAA ACAUAA-CCA ----AGCC(G 2341 UCAUA)AGC| CAA------A GUUA-CCCGU AAA------- -----cucac -ccu(-aaaa 2401 -)ac|g---- ----acccua guauucac-g auaa-----a ccc-auugCC ACGAA-AGCU 2461 A-UGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CAUAAA-UCC 2521 A--GAUC-CU |CC|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- acc(c-ac)c u---G-AGUA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUA- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCUAACC ACUUCUAGCC ---------- ---------- 2881 (---a---aa a--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU UGC-|CUU(A --AUU)GAG- -----(agu- 3181 gca)-----A C-AGCAAGCA CAA-UAAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -caccacgc- 3781 ---------G CUAAAA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 A-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAG-AAcauu 4021 ---------- -----cACGA --AAAGG-AG U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--Uu) U-AC-C--CC -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAAAGA(- caaua-aa-- --)ACUUUUU U-uaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -gac--ggcc 4261 cuggGG-UA- CGUACAUA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< guauacugc- 4381 ccac---c-a auaauacuua -auacaacua gcca-aa-aa u--------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAAG-AGG-U ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.erith 5213 bp RNA RNA 02-JAN-1999 DEFINITION Mitochondrion Ceyx erithacus.; . ACCESSION U89219 KEYWORDS . SOURCE Mitochondrion Ceyx erithacus. ORGANISM Mitochondrion Ceyx erithacus. REFERENCE 1 (bases 1 to 927) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 927) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (11-FEB-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89219 BASE COUNT 294 a 269 c 179 g 185 t 4286 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CAG-UUAGUU -C-UUGC-CA |GA-UA--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCAUCCCAGU GUAAA---UG C|CCC-Aggc --uu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---uacc a----)---- 1261 ---------- ---------- --ag--aua- a--aAGGAGC |--------- uGGCAUCA-- 1321 -GGCGCAC-- -----(uaca aa-------- ---------- ---------- ------)--- 1381 ---GU|aacc GCCCA--AGA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-UAUGAGU( ---------- ----GCAA)A CUCGA-CUU| 1561 A|-GUCA-U- GG-CAa---- ---------- ---------- (-cacuua-- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACCG U-------ca caCGGC|GUA AAGAGUGG-- -ccccauc-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----cuauu -au-ac-caa -cuagg--ac -----|UAAA AUGUAA-CCG ----AGCU(G 2341 UCAUA)AGC| CUA------A GAUA-CACGU AAA------- -----cucac -ccu(-caac 2401 -)au|g---- ----auccua gca-cuaa-u aauu-----g acu-gccgCC ACGAA-AGCU 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCU 2521 A--AGUG-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------u gcu(acac)c a---A-AGCA 2701 C-C|--C|GC C-AGAG-UAU UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- UCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCGACC GCCCCUGGCC ---------- ---------- 2881 (---aaag-- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC AC-CA|G-UC CAC-|CUU(C CCUGA)AAG- -----(--u- 3181 ccc)-----A C-AGUGGACA CAA-UAAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ccaaacc 3781 c--------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCU CAU------- ---------G 3841 U-G-GC-GG- -A-AGA--AA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AGcaac 4021 c--------- ------ACGG --AAGGG-GG U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAuc--) U-GC-C--CC -C--AAAAG- -GCGGAUUUA 4141 G-C--AGUAA g-UCGGAA(- uaaga-au-- --)GUCUAAC U-uaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACU--GGCC 4261 CUGGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagccaa- 4381 caacc-ucua uaauuaaua- -----cccca ---cuugcug ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.ameri 5213 bp RNA RNA 02-JAN-1999 DEFINITION Mitochondrion Chloroceryle americana.; . ACCESSION U89220 KEYWORDS . SOURCE Mitochondrion Chloroceryle americana. ORGANISM Mitochondrion Chloroceryle americana. REFERENCE 1 (bases 1 to 924) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 924) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (11-FEB-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89220 BASE COUNT 301 a 275 c 174 g 174 t 4289 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CUG-UUAGUU -C-UUAC-CA |GA-UA--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCACCCCAGU GUAAA---UG C|CCU-Uagc --cu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---uaua a----)---- 1261 ---------- ---------- --ag--acg- a--aAGGAGC |--------- cGGCAUCA-- 1321 -GGCUCAC-- -----(caac uacu------ ---------- ---------- ------)--- 1381 ---AU|---c GCCCA--AGA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG CAuu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUGAGU( ---------- ----GUAA)A CUCGA-CUU| 1561 A|-GUCA-U- GG-UAA---- ---------- ---------- (-cauuaa-- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -AAC-CCA-- 1981 AAUUA-ACCG U-------ca caCGGC|GUA AAGCGUGG-- -cccacacu- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------cau -aucacaaua acuagg--gu -----|AAAA AUGCAA-CUA ----AGCU(G 2341 UCAUA)AGC| CAA------A GAUU-CACAU AAC------- -----ccccc -uau(-uaaa 2401 -)ac|a---- ----acccua gcacuauc-a agacu----c acc-cucgCC ACGAA-AGCC 2461 A-GGG---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 A--GAUG-UU |CA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------c cac(ccac)c a---A-AACA 2701 U-C|--C|GC C-AGAG-AAU UACGAGC(-- -ACAAAC)GC UUG--AAACU CUAAGGAC-U 2761 UG|GCGGUA- CCCCAAA-CC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCGACC ACCCCUAGCC ---------- ---------- 2881 (---cgag-- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC AC-CA|G-CC CAC-|CUC(- --auu)GAA- -----(aga- 3181 ccu)-----A C-AGUGAGCA CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cccuc-- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC AAC------- ---------G 3841 G-G-GU-GG- -A-AGA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAaacc 4021 ---------- ------ACGA --AAGGA-GG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-GU-C--AC -C--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AUGGGA(- caaga-au-- --)GCCCCCU U-uaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCU 4261 CUGGGG-UA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcuac- 4381 ccaua-gcau aacuaauac- -----ccaac ---cuaacug ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GACG-AGG-U ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.cau.1 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Coracias caudata.; . ACCESSION U83764 KEYWORDS . SOURCE Mitochondrion Coracias caudata. ORGANISM Mitochondrion Coracias caudata. REFERENCE 1 (bases 1 to 918) AUTHORS Knight,A., Sawchuk,S.J. and Yuri,T. Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., TITLE orders based on mitochondrial DNA Phylogenetic relationships among and within select avian JOURNAL SYSTEMATICS: 211-245; Academic Press (1997) (in) Mindell,D.F. (Ed.) ; AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 918) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83764 BASE COUNT 285 a 274 c 198 g 161 t 4295 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~C 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GUAAA---UG C|CCC-caac --cu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----u-a cc-a-)---- 1261 ---------- ---------- --ag--aca- a--ACGGAGC |--------- uGGUAUCA-- 1321 -GGUUCAC-- -----(cuau ---------- ---------- ---------- ------)--- 1381 ---GU|---G GCCCA--AGA C|GCCUU-GU --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-GU UGACAUUAAG C-AAUGAGU( ---------- ----GUAA)A CUCGA-CUU| 1561 A|-GCCA-C- GG-CAA---- ---------- ---------- (--------- -ccacaa--- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GU -GGU-CA)-U ACAAGA|--- -GAC-CCA-- 1981 AGUUA-ACCG UA-------- cgCGGG|GUA AAGAGUGGu- -acugu---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----uccua -uc-acaaca acuaga--au -----|CAAA AUACGA-CUG ----AGCC(G 2341 UCAUA)AGC| CCA------A GCCG-CACAU AAG------- -----uccac -ccu(-aaaa 2401 -)ac|g---- ----auccua guccccac-- gauu------ aaccaagcCC ACGAA-AGCU 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCC 2521 A--GAUG-UC |CA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -uu(ccac)u a---G-AACA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GGGGUG- UCCUACA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUG C-ACCCAACC UCCCCUUGCC ---------- ---------- 2881 (-------aa ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCC(C --AAU)GAA- -----(gga- 3181 gcc)-----A C-AGUAAGCG AAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuucuc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 G-G-GG-GG- -A-AGA--AA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ca---)---- ---------- ---------- UAG-AGaacc 4021 accaacg--- ------AAAG --GGGGG-GU G-A(------ ---------- ---------- 4081 ---------- ---------- aac------) C-GC-C--CC -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCAGGA(- caaaa-ga-- --)GCCUACU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 CUAGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gcaagcu--- 4381 -acac-gauc ccaaguaacu aacgcucaac cu---ggcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa gacG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGCAUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.cau.2 5213 bp RNA RNA 02-JAN-1999 DEFINITION Mitochondrion Coracias caudata.; . ACCESSION U89225 KEYWORDS . SOURCE Mitochondrion Coracias caudata. ORGANISM Mitochondrion Coracias caudata. REFERENCE 1 (bases 1 to 922) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 922) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (11-FEB-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89225 BASE COUNT 284 a 285 c 190 g 163 t 4291 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CUG-UUAGCU -U-CUGC-CA |GG-CA--CA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCGCCCCAGU GUAAA---UG C|CCC-Caac --cu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---uacc a----)---- 1261 ---------- ---------- --ag--aca- a--aCGGAGC |--------- uGGUAUCA-- 1321 -GGCUCAC-- -----(cuau ---------- ---------- ---------- ------)--- 1381 ---GU|---G GCCCA--AGA C|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-GU UGACAUUAAG C-AAUGAGU( ---------- ----GUAA)A CUCGA-CUU| 1561 A|-GCCA-C- GG-CAA---- ---------- ---------- (-ccacaa-- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GAC-CCA-- 1981 AGUUA-ACCG U--------a cgCGGC|GUA AAGAGUGG-- -uacug---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----uuccu -aucacaaca acuaga--au -----|CAAA AUACGA-CUG ----AGCC(G 2341 UCAUA)AGC| CCA------A GCCG-CACAU AAG------- -----uccac -ccu(-aaaa 2401 -)ac|g---- ----auccua g-ucccca-c gauu-----a acc-aagcCC ACGAA-AGCU 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCC 2521 A--GAUG-UC |C-|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- auu(ccac)u a---G-AACA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- UCCUACA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUG C-ACCCAACC UCCCCUUgCC ---------- ---------- 2881 (---aaag-- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU UAC-|CCC(C --AAU)GAA- -----(gga- 3181 gcc)-----A C-AGUAAGCG AAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuucuc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 G-G-GG-GG- -A-AGA--AA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ca---)---- ---------- ---------- UAG-AGaacc 4021 acca------ ------ACGA --AAGGG-GG C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) C-GC-C--CC -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCAGAC(- aaaag--a-- --)GCCUACU U-uaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 CUAGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gcaagcuac- 4381 acgau-ccca aguaacuaac gc---ucaac ---cuggcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GACG-AGG-U ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.nubic 5213 bp RNA RNA 02-JAN-1999 DEFINITION Mitochondrion Merops nubicus.; . ACCESSION U89224 KEYWORDS . SOURCE Mitochondrion Merops nubicus. ORGANISM Mitochondrion Merops nubicus. REFERENCE 1 (bases 1 to 926) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 926) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (11-FEB-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89224 BASE COUNT 279 a 273 c 202 g 172 t 4287 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---acAGACU 661 (UAG-)U-CC U|AACCU-UA CUG-UUAGCU -C-UCGC-UA |AA-UA--CA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCACCCCAGU GAAAA---UG C|CCC-aggc a-gc-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---uacc a----)---- 1261 ---------- ---------- --ag--gca- c--agggaGC |--------- aGGCAUCA-- 1321 -GGCACAC-- -----(cagc uu-------- ---------- ---------- ------)--- 1381 ---GU|---a GCCCA--AAA C|GCCUU-GC --|------- (-uuu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-GU AGACAUUAAG C-AAUGAGU( ---------- ----GAAA)A CUUGA-CUU| 1561 A|-GUUA-G- AG-CgA---- ---------- ---------- (-aucca--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCGCC-GC -GGU-UA)-U ACAAGA|--- -AGC-CCA-- 1981 AGUUA-ACUG U-------ca gcCGGC|GUA AAGAGUGG-- -ucca----- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----guauu -gucagccca acuagg--gu -----|UGAA ACGUGC-CUG ----AGCU(G 2341 UCAUA)AGC| UUA------A GGCC-CGAAC AAG------- -----cucgc -ccc(-caaa 2401 -)gc|g---- ----acccua gcaa-cuc-c gacu-----a acc-aaccCC ACGAA-AGCU 2461 G-AGG---UU CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CCUAAA-UCA 2521 C--AGUG-UU |U-|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- ucc(cuac)u a---A-AACA 2701 C-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUG--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCA---CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCAACC GUUCCUUGCC ---------- ---------- 2881 (---aaag-- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CUU(U ACUGA)AAG- -----(---a 3181 cca)-----C A-AGUGGGCA CAA-UAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ugcgccc 3781 uac------A CUAGCA-AGA C-AGGUCAAG G|UAUA|GCC AAU------- ---------G 3841 G-A-CC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a gg---)---- ---------- ---------- UAG-AAcaac 4021 ca-------- ------ACGG --AAAGG-AG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-GC-C--CC -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-ACGAGA(- uuaga-ua-- --)GCUCGUU U-aaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCU--GGCC 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagccug- 4381 cagcc-caug guaacuaaca cg---cgcaa ---caugacc a--------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAAG-AGG-U ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.mexic 5213 bp RNA RNA 02-JAN-1999 DEFINITION Mitochondrion Momotus mexicanus.; . ACCESSION U89222 KEYWORDS . SOURCE Mitochondrion Momotus mexicanus. ORGANISM Mitochondrion Momotus mexicanus. REFERENCE 1 (bases 1 to 925) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 925) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (11-FEB-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89222 BASE COUNT 290 a 265 c 190 g 180 t 4288 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---agAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUAGUU -G-UUGC-UA |AA-UA--CA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCACGCCAGU GUAAA---UG C|CCU-Uggc --ccccu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---uaac a----)---- 1261 ---------- ---------- --ag--aua- a--aAGGAGC |--------- aGGUAUCA-- 1321 -GGCGCAC-- -----(caca gcc------- ---------- ---------- ------)--- 1381 ---GU|---a GCCUA--AGA C|ACCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-GU UGACAUUAAG C-AAUGAGU( ---------- ----GAAA)A CUCGA-CUU| 1561 A|-GUUA-U- AG-CAA---- ---------- ---------- (-ccuaa--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GGC-CCA-- 1981 AAUUA-ACUG U--------a caCGGC|GUA AAGAGUGG-- -ccuacacc- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------ccu -aucaugcug acuaag--ac -----|CAAA CUGCGA-CCA ----AGCU(G 2341 UCAUA)AGC| UCA------G AGCG-CAUAU AAG------- -----cccca -ccu(-uaag 2401 -)ac|g---- ----aacuua gcgcuacg-a uu-------a aca-uacaCC ACGAA-AGCU 2461 A-GGG---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UUU 2521 A--GAUG-CU |U-|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- acc(cuac)u g---A-AGCU 2701 U-C|--C|GC C-CGAG-UAU UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- UCUCAGA-CC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUG C-ACCCGACC AUUCCUAGCC ---------- ---------- 2881 (---aaag-- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUC(C --ACU)GAG- -----(agc- 3181 aua)-----A C-AGUGAGCA CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---caaaauc 3781 c--------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC AAU------- ---------G 3841 G-A-UU-GG- -A-AGA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAca-- 4021 ---------- ------ACAC agAAAGG-GA C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-AU-C--CC -U--AGAAG- -GUGGAUUUA 4141 G-C--AGUAA A-GGGGGA(- uuaaa-ga-- --)GCCCCCU U-uaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcccu- 4381 aauac-ccug uaaaccuaau aca--ccucu ---ccggcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-C ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.momot 5213 bp RNA RNA 02-JAN-1999 DEFINITION Mitochondrion Momotus momota.; . ACCESSION U89221 KEYWORDS . SOURCE Mitochondrion Momotus momota. ORGANISM Mitochondrion Momotus momota. REFERENCE 1 (bases 1 to 925) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 925) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (11-FEB-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89221 BASE COUNT 290 a 263 c 186 g 186 t 4288 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---agAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUAGUU -U-UUGC-UA |AA-UA--CA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCACGCCAGU GUAAA---UG C|CCU-Uggu --ccccu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---uaau a----)---- 1261 ---------- ---------- --ag--aua- a--aAGGAGC |--------- aGGUAUCA-- 1321 -GGCACGC-- -----(caca acu------- ---------- ---------- ------)--- 1381 ---GU|---a GCCUA--AGA C|ACCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-GU UGACCUUAAG C-AAUGAGU( ---------- ----GAAA)A CUCGA-CUU| 1561 A|-GUUA-U- AG-CAA---- ---------- ---------- (-ccuaa--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GGC-CCA-- 1981 AAUUA-ACUG U--------a caCGGC|GUA AAGAGUGG-- -ucuacac-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------cccu -aucaugccg acuaag--ac -----|CAAA CUGCGA-CCA ----AGCU(G 2341 UCAUA)AGC| CCA------G AGCG-CAUAU AAG------- -----cccca -ccu(-uaaa 2401 -)ac|g---- ----aucuua gcgcuacg-a uu-------a aca-uacaCC ACGAA-AGCU 2461 A-GGG---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UUU 2521 A--GACG-CU |U-|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- acc(cuac)u g---A-AGCC 2701 U-C|--C|GC C-UGAG-UAU UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- UCUCAGA-CC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUG C-ACCCGACC ACUCCUAGCC ---------- ---------- 2881 (---agag-- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUC(C --ACU)GAG- -----(agc- 3181 aca)-----A U-AGUGAGCA CAA-CAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---caaaauc 3781 c--------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC AAU------- ---------G 3841 G-A-UU-GG- -A-AGA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAca-- 4021 ---------- ------ACAC agAAAGG-GA C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-AU-C--CC -U--AGAAG- -GUGGAUUUA 4141 G-C--AGUAA A-GAGGGA(- uuaaa-ga-- --)GCCCCCU U-uaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCU--GGCC 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcccu- 4381 aauac-ccug uaaaccuuau aca--cuccu ---ucgacca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-C ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.T.todus 5213 bp RNA RNA 02-JAN-1999 DEFINITION Mitochondrion Todus todus.; . ACCESSION U89223 KEYWORDS . SOURCE Mitochondrion Todus todus. ORGANISM Mitochondrion Todus todus. REFERENCE 1 (bases 1 to 933) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 933) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (11-FEB-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89223 BASE COUNT 278 a 283 c 193 g 179 t 4280 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUAGCC -C-CUGC-UA |GA-CA--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCGCCCCAGU GUAAA---UG C|CCC-Caac --cc-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---uaua a----)---- 1261 ---------- ---------- --ag--gaa- g--aAGGAGC |--------- aGGUAUCA-- 1321 -GGCACAC-- -----(uucg uucuuuuccc ---------- ---------- ------)--- 1381 ---GU|---a GCCCA--AGA C|ACCUU-GC --|------- (-gca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUGAGU( ---------- ----GUAA)A CUCGA-CUU| 1561 A|-GUCA-U- AG-CAG---- ---------- ---------- (-uaacca-- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -AAC-CCA-- 1981 AGUUA-ACUG U--------a ugCGGC|GUA AAGAGUGG-- -ccucc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----guuau -aucaccaca acuagg--ac -----|UGAA ACGCAA-CUG ----AGCU(G 2341 UCAUA)AGC| UAA------A GGCG-CACAG AAA------- -----uccgc -ccu(-uaac 2401 -)au|g---- ----auccua gugccuau-g aucu-----a ccc-ccucCC ACGAA-AGCU 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCU 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- cc-(ccac)c a---A-AGUA 2701 U-C|--C|GC C-UGAG-AAU UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUC C-ACCCAACC GCUUCUAGCC ---------- ---------- 2881 (---agag-- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(C --CCU)GAG- -----(agc- 3181 gca)-----G C-AGUGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---aucuaac 3781 c--------G CUAGCA-AGA C-AGGUCAAG G|UAUA|GCC CAC------- ---------G 3841 G-A-GC-GG- -A-AGA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a cc---)---- ---------- ---------- UAG-AAaacc 4021 cca------- ------ACGG --AUGAG-AG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-GC-U--CU -C--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA G-GCGGGA(- uaaua-aa-- --)GCCCCCC U-uaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACC--GGCU 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< auaagcuac- 4381 accca-aaca ugacugauac -----ccucu ---cgagcug ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.sinen 5213 bp RNA RNA 14-SEP-1998 DEFINITION Mitochondrion Centropus sinensis.; . ACCESSION U89211 KEYWORDS . SOURCE Mitochondrion Centropus sinensis. ORGANISM Mitochondrion Centropus sinensis. REFERENCE 1 (bases 1 to 940) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level Phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 940) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (01-SEP-1998) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89211 BASE COUNT 325 a 251 c 166 g 198 t 4273 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|aaccu-UA CCG-UUAGCU -U-UUGC-UA |AA-CA--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCAUCCCAGU GUAAA---UG C|CCC-ugac --cc-auu-- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uacca -----)---- 1261 ---------- ---------- --aa--guu- a--aGGGAGC |--------- aGGUAUCA-- 1321 -GGCACAC-- -----(ccac aagcuuuaaa cg-------- ---------- ------)--- 1381 ---GU|---A GCCUA--GGA C|ACCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GCAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CAA---- ---------- ---------- (cccccuacc a--------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -AGC-CCA-- 1981 AACUA-ACCG U-------ua caCGGC|GUA AAGAGUGG-- -uauaa---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----gcccu -auuaauuaa acuaag--au -----|AAAA ACACAA-CCA ----AGCU(G 2341 UCAUA)AGC| AUA------A GUUG-UACUG AAA------- -----a--c- -ucc(-uaaa 2401 -)ac|a---- ----aucuua guaccau--g aua------a acu-aaacCC ACGAA-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-UUU 2521 U--GGUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- ac-(uuac)c a---A-AGUA 2701 C-C|--C|GC C-UGAG-AAC UACGAGC(-- -GCAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAUUCC 2821 A--------- ----)CGAUA C-ACCCAACC GCCUCUCGcc ---------- ---------- 2881 (---a---aa aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC CC-CA|G-CU CAC-|CUA(U --ACU)GAA- -----(aga- 3181 aca)-----A C-AGUGAGCU CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -cuaauucc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCU CAU------- ---------G 3841 A-G-GC-GG- -A-AGA--AA -UGGGCUACA CU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ac cc---)---- ---------- ---------- UAG-AAaac- 4021 ---------- ------ACGA --AAAGA-GA C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--A-) A-GU-C--UC -U--AGAAG- -GCGGAUUUA 4141 G-A--AGUAA A-GAGGGA(- u--ua-acua aa)GCCCUCU U-uaa---a- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACC--GGCU 4261 CUGGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaaaagcu- 4381 uuaca-ccca cua--uaauu aauuuaua-- cacca-gcga ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------ga GAUG-AGG-U ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.ery.2 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Coccyzus erythropthalmus.; . ACCESSION U83747 KEYWORDS . SOURCE Mitochondrion Coccyzus erythropthalmus. ORGANISM Mitochondrion Coccyzus erythropthalmus. REFERENCE 1 (bases 1 to 971) AUTHORS Knight,A., Sawchuk,S.J. and Yuri,T. Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., TITLE orders based on mitochondrial DNA Phylogenetic relationships among and within select avian JOURNAL SYSTEMATICS: 211-245; Academic Press (1997) (in) Mindell,D.F. (Ed.) ; AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 971) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83747 BASE COUNT 321 a 258 c 187 g 204 t 4243 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|GACCU-UA CAG-U-AGUU -U-UCGC-UA |AA-UA--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCGCCCCAGU GUAAA---UG C|CCU-Uaau --uu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uacca -----)---- 1261 ---------- ---------- --ag--aua- a--aAGGAGC |--------- aGGUAUCA-- 1321 -GGCACGC-- -----(ccac gaacua---- ---------- ---------- ------)--- 1381 ---GC|---G GCCCA--AGA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CAU---- ---------- ---------- (-ccucgca- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -AGC-CCA-- 1981 AAUUA-ACUG U-------au caCGGC|GUA AAGAGUGG-- -cacac---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----auauu -aucacuuaa ccuagg--au -----|CAAA AUGUAA-CUG ----AGCC(G 2341 UCAUA)AGC| CAA------A GUUA-UAUCU AAA------- -----aucac -cgc(-uaaa 2401 -)gu|u---- ----auccua gcaaaccu-g agag-----a uca-caccCC ACUAA-AGCU 2461 A-GGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCU 2521 U--GGUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- acc(cuac)c a---A-AGUA 2701 C-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- UCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGCUA C-ACCCAACC ACCUCUAGCC ---------- ---------- 2881 (---c---aa ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GG-CA|G-CU CAC-|CUC(U --ACU)GAG- -----(aga- 3181 aca)-----A C-AGUGAGCA CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ccuccc- 3781 ---------G CUAGCA-AGA C-AGGUCAAG G|UAUA|GCU UAU------- ---------G 3841 A-G-GC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-cu aa---)---- ---------- ---------- UAG-AAaac- 4021 ---------- ------ACGG --AGAGA-GG U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) U-AU-C--UC -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GAAGGA(- uaaua-aa-- --)ACCUCCU U-uaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUC--GGCU 4261 CUGGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagccgc- 4381 aaauu-uc-a nuaacuaaua -a-cauca-- caa---gcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGAAUA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.fugax 5213 bp RNA RNA 14-SEP-1998 DEFINITION Mitochondrion Cuculus fugax.; . ACCESSION U89210 KEYWORDS . SOURCE Mitochondrion Cuculus fugax. ORGANISM Mitochondrion Cuculus fugax. REFERENCE 1 (bases 1 to 929) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level Phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 929) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (01-SEP-1998) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89210 BASE COUNT 308 a 243 c 175 g 203 t 4284 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|aaccu-UA CCG-UUAGUU -U-UUGC-UA |GA-UA--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCGCUCCAGU GUAAA---UG C|CCU-Uaac --cu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uacua -----)---- 1261 ---------- ---------- --ag--aca- a--aAGGAGC |--------- aGGCAUCA-- 1321 -GGCACGC-- -----(ucca gacacuu--- ---------- ---------- ------)--- 1381 ---GC|---A GCCCA--AGA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GAAA)A CUUGA-CUU| 1561 A|-GUCA-U- AG-CAA---- ---------- ---------- (---uccca- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -AGC-CCA-- 1981 AAUUA-ACUG U-------aa caCGGC|GUA AAGAGUGG-- -uaugc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----gcauu -aucacagua ccuaaa--au -----|CGAA AUGUAA-CUG ----AGCC(G 2341 UCAUA)AGC| CUA------A GCUA-CACUU AAA------- -----gccac -cau(-uaaa 2401 -)au|g---- ----aucuua gcaaauua-u ugaua----a auc-agaaCC ACCAA-AGCU 2461 A-GGA---CA CAAAUUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCU 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- acc(uuac)c a---A-AGUA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAACCC 2821 A--------- ----)CGCUA C-ACCCAACC GUCUCUGGCC ---------- ---------- 2881 (---u---ga ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(C --CCU)GAA- -----(aga- 3181 aua)-----A C-AGUGGGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ccucc-- 3781 ---------G CUAGUA-AGA C-AGGUCAAG G|UAUA|GCU UAU------- ---------G 3841 G-G-AC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ac aa---)---- ---------- ---------- UAG-AAaauc 4021 ---------- -----aACGA --AAAGA-GA U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--A-) U-AU-C--CC -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GAAAGA(- uaaug-aa-- --)GCUCUCU U-uaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCC 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcucc- 4381 aaguu-ua-c auaacuaau- gcccuuca-- -aa---gcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.velox 5213 bp RNA RNA 14-SEP-1998 DEFINITION Mitochondrion Geococcyx velox.; . ACCESSION U89212 KEYWORDS . SOURCE Mitochondrion Geococcyx velox. ORGANISM Mitochondrion Geococcyx velox. REFERENCE 1 (bases 1 to 942) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level Phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 942) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (01-SEP-1998) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89212 BASE COUNT 298 a 267 c 174 g 203 t 4271 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|aaccu-UA UCG-UUAGUU -U-UUGC-UA |AA-CA--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCGCCCCAGU GUAAA---UG C|CCU-Uaac --ac-ucu-- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uacua -----)---- 1261 ---------- ---------- --ag--aua- g--aAGGAGC |--------- aGGCAUCA-- 1321 -GGCGCAC-- -----(cccc cccccc---- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-cca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GAAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CAA---- ---------- ---------- (cccugcccu ca-------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC--GGU 1921 -AAA-U---C UUGU-G(-CC AGCUACC-GC -GGU-CA)-C ACAAGA|--- -GAC-CCa-- 1981 AAUUA-ACUG U------caa caCGGC|GUA AAGAGUGG-- -uauuu---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----guauu -accucuaca auuaaa--au -----|CAAA ACGUAG-UCA ----AGUU(G 2341 UCAUA)AGC| UCA------C ACUA-CCUCU AAA------- ----aucacc cuac(-acga 2401 -)uu|uuaag ----auuuuu ucuug----g uaaa-----c cag-accuCC ACGAA-AGCU 2461 A-GGG---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCU 2521 U--GGUG-UC |UC|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- acc(cuac)u a---A-GACA 2701 C-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- UCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAACCC 2821 A--------- ----)CGAUC C-ACCCAACC GAUCCUAGCC ---------- ---------- 2881 (--ua---aa au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(A --UUU)GAa- -----(agg- 3181 aca)-----A C-AGUGAGCA CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -ccuauccc- 3781 ---------G CUAGCA-AGA C-AGGUCAAG G|UAUA|GCU CAU------- ---------G 3841 G-A-UC-GG- -A-AGU--AA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-cc aa---)---- ---------- ---------- UAG-AGaac- 4021 ---------- ------ACGA --AAAGG-GA C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) U-GG-C--CC -U--AGAAG- -GCGGAUUUA 4141 G-A--AGUAA A-GAAGGA(- caaua-aa-- --)GCUUUCU U-aaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -auu--GGCC 4261 CUGGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagccca- 4381 acuuc-ac-a auaccuaaua ---cucuacc guag--gcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GACG-AGG-U ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.super 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Accipiter superciliosus.; . ACCESSION U83715 KEYWORDS . SOURCE Mitochondrion Accipiter superciliosus. ORGANISM Mitochondrion Accipiter superciliosus. REFERENCE 1 (bases 1 to 970) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 970) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83715 BASE COUNT 297 a 280 c 196 g 197 t 4243 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGAAU 661 (UAG-)U-CC U|AACCU-UG CUG-UUAACU -C-GUGC-UA |AA-UA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCUCCAGU GUAAA---UG C|CCU-Cagc --uu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----u-- acua-)---- 1261 ---------- ---------- --ag--aca- --ccAGGAGU |--------- gGGCAUCA-- 1321 -GGCACAC-- -----(ccac cagcc----- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCU--( CACG-)--GG CAcc---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CAC---- ---------- ---------- (accuua--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GGC-CCA-- 1981 AGCUA-ACAG C-c----auu --CGGC|GUA AAGAGCGG-- -auucu---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----uacua -u-ucaagug acuagg--au -----|UAAA UCGCAA-CUA ----AGCU(G 2341 UCAUA)AGC| CUA------A GAUG-CACCU AAA------- -----accac -ccu(-caaa 2401 -)gc|g---- ----auccua guacccacu- gacug----- acuaaaacCC GCGAA-AGCC 2461 A-GGG---CU CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 U--GAUA-CU |UG|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(ccac)c g---A-AGUA 2701 U-U|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGCUA C-ACCCCGAC CCCUCCUUGC ---------- ---------- 2881 (---c---ca aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUC(U --UCU)GAG- -----(agc- 3181 uca)-----A C-AGUGAGCU CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cccucc- 3781 ---------G CUAAAA-CGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAaacc 4021 ---------- ------ACGA --AAGGG-GG U-A(------ ---------- ---------- 4081 ---------- ---------- ugaaa--c-) A-AC-C--CC -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AUGGGA(- caaua-aa-- --)GCCCCCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 CUGAGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gcaggcc--- 4381 -auau-acuu ucauaauuaa uaacucggau u----cgcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGCAUA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.buteo 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Buteo buteo.; . ACCESSION U83719 KEYWORDS . SOURCE Mitochondrion Buteo buteo. ORGANISM Mitochondrion Buteo buteo. REFERENCE 1 (bases 1 to 972) AUTHORS Knight,A., Sawchuk,S.J. and Yuri,T. Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., TITLE orders based on mitochondrial DNA Phylogenetic relationships among and within select avian JOURNAL SYSTEMATICS: 211-245; Academic Press (1997) (in) Mindell,D.F. (Ed.) ; AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 972) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83719 BASE COUNT 297 a 277 c 191 g 207 t 4241 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UG CUG-UUAACU -C-UUGC-UA |AA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GUAAA---UG C|CCU-Uaau --uu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----u-a c-u-a)---- 1261 ---------- ---------- --ag--aua- --auAGGAGC |--------- uGGUAUCA-- 1321 -GGCACAC-- -----(ccac cuagcu---- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|ACCUU-GC --|------- (-ucu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG CAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CAU---- ---------- ---------- (-accuua-- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCGCC-GC -GGU-CA)-U ACAAGA|--- -GAC-CCA-- 1981 AGCUA-ACAG C---a--uc- --CGGC|GUA AAGAGCGGg- -uacau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----ac-ua -ucuaggc-a acuagg--au -----|UAAA UCGCAA-CUG ----AGCU(G 2341 UCAUA)AGC| CCA------A GAUA-CGCCU AAA------- -----gccau -ccc(-caag 2401 -)ac|g---- ----acccua gcgcccac-- gauug----- acuaacccCC GCGAA-AGCC 2461 A-GGG---CU CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCC 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -uc(uuac)c a---A-AGUA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCC-AAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGCUA C-ACCCUACC ACUCCUUGCC ---------- ---------- 2881 (---c----c aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC UC-CA|G-CU CAC-|CUC(U --UCU)GAG- -----(agc- 3181 uua)-----A U-AGUGAGCC CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -cccuuccc- 3781 ---------G CUAAAA-ACA C-AGGUCAAG G|UAUA|GCU UAU------- ---------G 3841 G-A-GU-GG- -C-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g aa---)---- ---------- ---------- UAG-AAaauc 4021 aauu------ ------ACGA --AAAGG-GG U-G(------ ---------- ---------- 4081 ---------- ---------- ugaaa--u-) A-AC-C--CC -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-CUGGGA(- caaua-aa-- --)GCCCUAU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GUU--GGCC 4261 CUGAGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gcaggcu--- 4381 -auac-cccc acauaacuaa uaacccacua -----ugcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGCAUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.jamai 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Buteo jamaicensis.; . ACCESSION U83720 KEYWORDS . SOURCE Mitochondrion Buteo jamaicensis. ORGANISM Mitochondrion Buteo jamaicensis. REFERENCE 1 (bases 1 to 973) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 973) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83720 BASE COUNT 298 a 283 c 190 g 202 t 4240 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UG CUG-UUAACU -C-UUGC-UA |AA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GUAAA---UG C|CCU-Uaau --uu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----u-a c-u-a)---- 1261 ---------- ---------- --ag--aua- --acAGGAGC |--------- uGGUAUCA-- 1321 -GGCACAC-- -----(ccac ccagcu---- ---------- ---------- ------)--- 1381 ---GU|---A GCCCc--AGA C|ACCUU-GC --|------- (-ucu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG CAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CAU---- ---------- ---------- (-aucuca-- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GAC-CCA-- 1981 AGCUA-ACAG C-a----uc- --CGGC|GUA AAGAGCGGg- -uacuu---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----ac-ua -ucuaagc-a acuagg--au -----|UAAA UCGCAA-CUG ----AGCU(G 2341 UCAUA)AGC| CCA------A GAUA-CGCCU AAA------- -----gccau -ccc(-caaa 2401 -)ac|g---- ----acccua acgccuac-- gauug----- acuaacccCC GCGAA-AGCC 2461 A-GGG---CU CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(uuac)c a---A-AGUA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGCUA C-ACCCCACC ACUCCUUGCC ---------- ---------- 2881 (---c----c aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC UC-CA|G-CU CAC-|CUC(U --UCU)GAG- -----(agc- 3181 uua)-----A U-AGUGAGCC CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --cccuccc- 3781 ---------G CUAAAA-AGA C-AGGUCAAG G|UAUA|GCU CAC------- ---------G 3841 G-A-GU-GG- -C-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g aa---)---- ---------- ---------- UAG-AAaacc 4021 aacuu----- ------ACGG --AAGGG-GG U-G(------ ---------- ---------- 4081 ---------- ---------- ugaaa--u-) A-AC-C--CC -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-CUGGGA(- caaua-aa-- --)GCCCUAU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GUU--GGCC 4261 CUGAGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gcaggcu--- 4381 -auaa-cccc acauaacuaa uaacccacua -----ugcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGCAUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.galli 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Circaetus gallicus.; . ACCESSION U83717 KEYWORDS . SOURCE Mitochondrion Circaetus gallicus. ORGANISM Mitochondrion Circaetus gallicus. REFERENCE 1 (bases 1 to 963) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 963) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83717 BASE COUNT 294 a 286 c 202 g 181 t 4250 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UG CCG-UUAAUU -C-GUGC-UA |AG-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GUAAA---UG C|CCU-Cgau -ucc-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------a c-u--)---- 1261 ---------- ---------- --ag--gau- g-acAGGAGC |--------- gGGCAUCA-- 1321 -GGCACAC-- -----(ccau cugacc---- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CAC---- ---------- ---------- (-uccua--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCU|-GGU 1921 -UAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -AGC-CCA-- 1981 AAUUA-ACAG C------acu --CGGC|GUA AAGAGUGG-- -gugcu---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----cacua -ucc-aggca aucagg--gg -----|UAAA CCGCAG-CUA ----AGCU(G 2341 UCAUA)AGC| CCA------A GAUG-CGCCU AAA------- -------acc -acc(--uaa 2401 -)gu|g---- ----acccug augccuac-- gacca----- acuaacucCC ACGAA-AGCC 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCC 2521 U--AAUG-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(cuac)c a---A-AGUA 2701 U-U|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCC-AAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGCUA C-ACCCCACC ACCCCUCGCC ---------- ---------- 2881 (-------ca ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU CAC-|CUC(C --CCU)GAA- -----(aga- 3181 uca)-----A C-AGUGAGCC CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --ccaaccc- 3781 ---------G CUAAAA-AGA C-AGGUCAAG G|UAUA|GC- CAC------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAaacc 4021 ca-------- ------ACGG --AAAGG-GG C-A(------ ---------- ---------- 4081 ---------- ---------- ugaaa--c-) C-AC-C--CC -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-ACGGGA(- caaua-aa-- --)GCCCCAU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 CUGAGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gcaagcu--- 4381 -auag-cucu gcauaguuaa uaacccaguc -----agcu- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGCACA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.aerug 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Circus aeruginosus.; . ACCESSION U83716 KEYWORDS . SOURCE Mitochondrion Circus aeruginosus. ORGANISM Mitochondrion Circus aeruginosus. REFERENCE 1 (bases 1 to 972) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 972) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83716 BASE COUNT 298 a 268 c 197 g 209 t 4241 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UG CUG-UUAACU -A-GUGC-UA |AA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GUAAA---UG C|CCU-Uaau --uu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----u-- acua-)---- 1261 ---------- ---------- --ag--aug- a-c-AGGAGC |--------- gGGCAUCA-- 1321 -GGCGCAC-- -----(uccc caac------ ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-uuu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG CAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GCUA-U- GG-CAC---- ---------- ---------- (ucaccca-- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GAC-CCA-- 1981 AGCUA-ACAG C------aca --CGGC|GUA AAGAGCGGg- -ucccu---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----accua -ucuua-aua auuagg--au -----|UAAG UCACAA-CUA ----AGCU(G 2341 UCAUA)CGC| CUA------A GAUG-UGCUU AAA------- -----aucau -ccu(-caaa 2401 -)ac|g---- ----auccua auacucac-- gauca----- acuaaaacCC GCGAA-AGCC 2461 A-GGG---CU CAAACUGGG( AUUAGAUAC) CCCA-UUAU| -GCCU-GGC- CCUAAA-UCU 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cu(uuac)c a---A-AGUA 2701 U-C|--C|GC C-UGAG-GAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAGA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGCUA C-AUCCGACC ACUCCUUGCC ---------- ---------- 2881 (-------ca ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(U --UCU)GAG- -----(agu- 3181 uua)-----A C-AGUGGGCC CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --cuacccc- 3781 ---------G CUAAAA-AGA C-AGGUCAAG G|UAUA|GCC cac------- ---------G 3841 G-A-GU-GG- -G-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAgauc 4021 uau------- ------ACGA --AAGGA-GG U-G(------ ---------- ---------- 4081 ---------- ---------- ugaaa--cu) A-AC-C--UC -C--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AUGGGA(- caaua-au-- --)GCCCUAU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCU--GGCC 4261 CUGAGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< guaggcc--- 4381 -auaa-accc -uauaacuaa ucaaccugca u----ugcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGCAUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.fulvu 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Gyps fulvus.; . ACCESSION U83718 KEYWORDS . SOURCE Mitochondrion Gyps fulvus. ORGANISM Mitochondrion Gyps fulvus. REFERENCE 1 (bases 1 to 962) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 962) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83718 BASE COUNT 300 a 256 c 200 g 206 t 4251 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CUG-UUAAUU -C-AUGC-UA |AA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GUAAA---UG C|CCU--cg- --au-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----cu uauua)---- 1261 ---------- ---------- --ag--aug- --acAGGAGC |--------- aGGCAUCA-- 1321 -GGCACAC-- -----(auca auc------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA -|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCU--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GCAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CAU---- ---------- ---------- (aucucca-- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -AAC-CCA-- 1981 AGUUA-ACAG U------guu --CGGC|GUA AAGAGUGGg- -ugcuu---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----a-cua -uccaa-gcg guuagg--au -----|UAAA CUGCAG-CUG ----AGCU(G 2341 UCAUA)AGC| CCA------A GAUG-UAUCU AAA------- --------ac -cau(-cacc 2401 -)aa|g---- acg-auccua gcacca---- ---------- acuaaaccCC ACGAA-AGCC 2461 A-GGG---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UUU 2521 C--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(ccac)c a---A-AGUA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCUAAaCC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGUUA C-GCCCUACC ACCCUUUGCG ---------- ---------- 2881 (-------ca ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---c-a-GGC UUAgCA|UA- 3121 |CC|-GC--G |G------uC GU-CA|G-CU CAC-|CUG(U --UGU)GAA- -----(agu- 3181 uaa)------ U-AGUGAGCC UAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --ccacccaa 3781 ua-------G CUAGAA-AGA C-AGGUCAAG G|UAUA|GC- cac------- ---------G 3841 G-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ag---)---- ---------- ---------- UAG-AAaauc 4021 ua-------- ------ACGA --AAAGG-GG U-G(------ ---------- ---------- 4081 ---------- ---------- ugaaa--c-) A-GC-C--CC -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-UCGGGA(- caaua-ga-- --)GCCCCAU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACC--GGCC 4261 CUGAGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gcaggcu--- 4381 -accc-uuuc cauaguuaau aacccaauc- -----agccg ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------AA GAUU-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)G-U-GC- ACUUAGCAUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.H.leuco 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Haliaeetus leucocephalus.; . ACCESSION U83722 KEYWORDS . SOURCE Mitochondrion Haliaeetus leucocephalus. ORGANISM Mitochondrion Haliaeetus leucocephalus. REFERENCE 1 (bases 1 to 970) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 970) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83722 BASE COUNT 282 a 280 c 208 g 200 t 4243 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CUG-UUAGCU -C-GUGC-UA |AA-CC--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GUAAA---UG C|CCU-Uagc --uu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----u-a -uu-a)---- 1261 ---------- ---------- --ag--aug- --acAGGAGC |--------- uGGCAUCA-- 1321 -GGCACAC-- -----(ccuu cgucc----- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG CAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CAU---- ---------- ---------- (-acccua-- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GAC-CCA-- 1981 AGCUA-ACAA c------guu --CGGC|GUA AAGAGCGGg- -uccuu---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----ac-ua -ucuaagu-a acuagg--gu -----|UAAA UCGCAA-CUG ----AGCC(G 2341 UCAUA)AGC| CCA------A GAUG-CGCCU AAA------- -----gccgc -cac(-cuaa 2401 g)ac|g---- ----acccua gcaccuac-- gauug----- accaacccCC GCGAA-AGCC 2461 A-GGG---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(ccac)c a---A-AGUA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGCUG C-ACCCCACC ACUUCUUGCA ---------- ---------- 2881 (--ca---ua -g-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUC(U --UCU)GAG- -----(agc- 3181 uua)-----G C-AGUGAGCU CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --uuccccc- 3781 ---------G CUAAAA-AGA C-AGGUCAAG G|UAUA|GCU CAC------- ---------G 3841 A-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g ag---)---- ---------- ---------- UAG-AAaacu 4021 ac-------- ------ACGG --AAGGG-GG C-A(------ ---------- ---------- 4081 ---------- ---------- ugaaa--u-) G-GC-C--CC -C--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-CUGGGA(- caaug-ga-- --)GCCCUGU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCU--GGCC 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< guaggcc--- 4381 -guau-uccc cauaacuaau aacccaaca- -----ugcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUAGCAUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.migra 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Milvus migrans.; . ACCESSION U83721 KEYWORDS . SOURCE Mitochondrion Milvus migrans. ORGANISM Mitochondrion Milvus migrans. REFERENCE 1 (bases 1 to 971) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 971) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83721 BASE COUNT 295 a 286 c 197 g 193 t 4242 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CUG-UUAACU -C-GUGC-UA |GG-CC--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GUAAA---UG C|CCU-Uaau --uu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----c-a c-ua-)---- 1261 ---------- ---------- --ag--aug- --acAGGAGC |--------- uGGCAUCA-- 1321 -GGCACAC-- -----(ucau uaacc----- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG CAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CCU| 1561 A|-GUUA-U- AG-CAU---- ---------- ---------- (-auccua-- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCGCC-GC -GGU-CA)-U ACAAGA|--- -AAC-CCA-- 1981 AGCUA-ACAG U------auu --CGGC|GUA AAGAGCGGg- -cacuu---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----ac-ua -ucgaagc-a acuagg--gu -----|UAAA UCGCAA-CUG ----AGCU(G 2341 UCAUA)AGC| CUA------A GAUG-CGCCU AAA------- -----accac -ccu(-cuaa 2401 g)ac|g---- ----acccua gcacccac-- gaccg----- accaaaccCC GCGAA-AGCC 2461 A-GGG---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -uc(cuac)c a---A-GGUA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUG--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUACA--AU CG(AUAACCC 2821 A--------- ----)CGCUA C-ACCUCACC ACUUCUUGCC ---------- ---------- 2881 (--ca---ca -g-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUC(U --CCU)GAG- -----(agu- 3181 uca)-----A C-AGUGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -uucucccc- 3781 ---------G CUAAAA-AGA C-AGGUCAAG G|UAUA|GCU CAC------- ---------G 3841 A-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ga---)---- ---------- ---------- UAG-AAaacc 4021 ac-------- ------ACGG --AAGGG-GA C-A(------ ---------- ---------- 4081 ---------- ---------- ugaaa--c-) A-GC-C--CC -C--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-CUGAGA(- caauc-ga-- --)GCUCUAU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACU--GGCC 4261 CUGGAG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< guaggcc--- 4381 -auau-ccuc cauaacuaau aacccacca- -----cgcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGCACA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.apivo 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Pernis apivorus.; . ACCESSION U83724 KEYWORDS . SOURCE Mitochondrion Pernis apivorus. ORGANISM Mitochondrion Pernis apivorus. REFERENCE 1 (bases 1 to 970) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 970) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83724 BASE COUNT 302 a 288 c 194 g 186 t 4243 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUAACU -C-GUGC-UA |AA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GUAAA---UG C|CCU-Caac --uc-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----u-a cuc-a)---- 1261 ---------- ---------- --ag--gua- --ccAGGAGC |--------- aGGCAUCA-- 1321 -GGCACAC-- -----(ccac cgacc----- ---------- ---------- ------)--- 1381 ---GU|---A GCCUA--AGA C|GCCUU-GC --|------- (-uuc--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GUAA)G CUUGA-CUU| 1561 A|-GUUA-U- GG-CAC---- ---------- ---------- (-ucuuauca ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AGUUA-ACCG U-u----aua --CGGC|GUA AAGAGUGGg- -uacuc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----uc-ua -uccaaac-a gccagg--au -----|UAAA AUGCAA-CUG ----AGCC(G 2341 UCAUA)AGC| UGA------A GCUG-CGCCU AAA------- -----accac -cc-(-caaa 2401 -)ac|g---- ----auccug cucccac--- gauu------ gauuaaccCC ACGAA-AGCC 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCC 2521 U--AAUA-CU |U-|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- ccc(uuac)u a---A-AGUA 2701 U-U|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAAaCC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUA C-ACCAAACC ACUCUUUGUC ---------- ---------- 2881 (---a----a aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CGC-|CUC(- --CAU)GAG- -----(aga- 3181 uca)-----A C-AGCGGGCU CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --cucaccg- 3781 ---------C UAGGCA-AGA C-AGGUCAAG G|UAUA|GCC -ac------- ---------A 3841 G-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAaacc 4021 ---------- ------ACGG --AAGGG-AG C-A(------ ---------- ---------- 4081 ---------- ---------- ugaaa--ca) A-GC-C--CC -C--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCAGGA(- uaaua-aa-- --)GCCCCAU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GUU--GGCC 4261 CUAGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcu--- 4381 -acaa-cccc cccacuaacu aaucccccaa cc---agcug ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGCAUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.swain 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Gampsonyx swainsonii.; . ACCESSION U83723 KEYWORDS . SOURCE Mitochondrion Gampsonyx swainsonii. ORGANISM Mitochondrion Gampsonyx swainsonii. REFERENCE 1 (bases 1 to 973) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 973) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83723 BASE COUNT 313 a 272 c 187 g 201 t 4240 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUAAUU -U-AUGC-CA |AA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GUAAA---UG C|CCU-Uagc --cc-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----u-a cucua)---- 1261 ---------- ---------- --ag--gca- --guAGGAGC |--------- aGGUAUCA-- 1321 -GGUCCAC-- -----(cagc a--------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|ACCUU-GC --|------- (-cuu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCU--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-AU UAAUAUUAAG C-AAUAAGU( ---------- ----GAAA)A CUUGA-CUU| 1561 A|-GUUA-U- GG-CAC---- ---------- ---------- (uuaucucua a--------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACCG U-u----aca --CGGC|GUA AAGAGUGGg- -cauac---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----uuacu -auccaagua acuagg--au -----|UAAA GUGCAA-CUA ----AGCU(G 2341 UCAUA)AGC| CAA------A GAUG-CUCCU AAA------- -----cccgc -cc-(-caaa 2401 -)ac|g---- ----auccua cuuccacg-- gacca----- auuaaaccCC ACGAA-AGCU 2461 A-GGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCU 2521 C--AAUG-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cu(uuac)u a---A-AGCA 2701 U-U|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUG--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAGA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGCUA C-ACCCCACC ACUCCUUGCC ---------- ---------- 2881 (---a---aa aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-CA|UA- 3121 |CC|-GC--C |G------UC AU-CA|G-CU CAC-|CUU(U --CAU)GAA- -----(aga- 3181 uca)-----A C-AGUGAGCU CAG-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --cacuccc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UACA|GCC UAU------- ---------G 3841 A-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAaauc 4021 ---------- ------ACGA --AAGGG-GA U-A(------ ---------- ---------- 4081 ---------- ---------- ugaaa--ca) U-UU-C--CC -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-UCAGGA(- uaaga-ag-- --)GCCUCAU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCA--GGCU 4261 CUGGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcc--- 4381 -acuc-accc acau-aacua aaaccccaau a----ggcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GACG-AGG-U AAGUCGUAAC AAGGUAAG-C GUA-CC(GGA 4621 -A)GGU-GC- GCUUAGCAUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.halia 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Pandion haliaetus.; . ACCESSION U83725 KEYWORDS . SOURCE Mitochondrion Pandion haliaetus. ORGANISM Mitochondrion Pandion haliaetus. REFERENCE 1 (bases 1 to 973) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 973) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83725 BASE COUNT 321 a 273 c 188 g 191 t 4240 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CUG-UUAGUU -C-GUGC-UA |GA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCGGU GAAAA---UG C|CCU--aac --uu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----u-a cc--a)---- 1261 ---------- ---------- --ag--aca- --acAGGAGC |--------- uGGCAUCA-- 1321 -GGCACGC-- -----(cuaa gacc------ ---------- ---------- ------)--- 1381 ---GC|---A GCCUA--AGA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG CAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GAAA)A CUUGA-CUU| 1561 A|-GCCA-U- AG-CAC---- ---------- ---------- (-cuacua-- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCUACC-GC -GGU-CA)-U ACAAGA|--- -GGC-CCA-- 1981 AGCUA-ACUA Gu-----auu --CGGC|GUA AAGAGUGGa- -uaccc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----ac-ua -uccaaac-a acuagg--gu -----|UAAA ACGCAA-CUA ----AGCU(G 2341 UCACA)AGC| UAA------A GAUG-CAC-U UAA------- -----acu-c aucc(-caaa 2401 g)au|g---- ----acccua acuauac--- gauug----- acuaacuuCC ACGAA-AGCC 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 C--AAUG-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -ac(uaac)u a---A-AGCA 2701 U-U|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCUCAAA-CC CCACCUAG|A GACCGUGU-U |CUGUA--AU CG(AUAACCC 2821 A--------- ----)CGUUA C-ACCUCACC AUCCCUUGCC ---------- ---------- 2881 (---a----a aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUU(C --CCU)GAG- -----(aga- 3181 cua)-----A C-AGUGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -uacgcccg- 3781 ---------C UAGGCA-AGA C-AGGUCGAG G|UAUA|GCC UAa------- ---------U 3841 GAG-AU-GG- -U-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAaacc 4021 aa-------- ------ACGA --AAGGG-GG C-A(------ ---------- ---------- 4081 ---------- ---------- ugaaa--cc) U-UC-C--CC -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-ACAGGA(- uaaua-aa-- --)GCCCAAC U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACU--GGCC 4261 CUGAGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcu--- 4381 acaac-ccuc uuag-auaac uaacacaccc aaa--agcug ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUAGCACA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.F.pereg 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Falco peregrinus.; . ACCESSION U83727 KEYWORDS . SOURCE Mitochondrion Falco peregrinus. ORGANISM Mitochondrion Falco peregrinus. REFERENCE 1 (bases 1 to 979) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 979) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83727 BASE COUNT 318 a 274 c 194 g 193 t 4234 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CGG-UUGGCC -C-CUGC-UA |GA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGGUCCAGU GUAAA---UG C|CCU-Agac --cu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----u-a cc--a)---- 1261 ---------- ---------- --ag--acu- --aaAGGAGC |--------- aGGCAUCA-- 1321 -GGCACAC-- -----(acca ucaauu---- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG CAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGC( ---------- ----GCAA)G CUUGA-CUU| 1561 A|-GUCA-U- GG-CAA---- ---------- ---------- (-ccuua--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -AAC-CCA-- 1981 AGCCA-ACAG Uc-----aca --CGGC|GUA AAGAGUGGa- -cuaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---accuguc auaauaa--- -cuagg--aa uaau-|CAAA ACAUAA-CUG ----AGCU(G 2341 UCAUA)AGC| CCA------A GAUA-UCCCU AAG------- -----gccaa -cuu(-aaaa 2401 -)au|g---- ----auccua guauaucc-- gacgg----- accaaaccCC ACGAA-AGCU 2461 A-GGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCC 2521 U--GAUG-UU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -uu(guac)c aua-G-CACA 2701 U-C|--C|GC C-CGAG-AAU UACGAGC(-- -ACAAAC)GC UUG--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AA CG(ACACCCC 2821 A--------- ----)CGCUA C-ACCCUACC ACUUCUCGCC ---------- ---------- 2881 (---a---ga aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CCU(A --AUU)GAA- -----(gga- 3181 ugc)-----A C-AGUGAGCA CAA-UAAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cacccc- 3781 ---------G UUAGCA-CGA C-AGGUCAAG G|UAUA|GCC UAC------- ---------G 3841 A-A-GU-GG- -A-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ua---)---- ---------- ---------- UAG-AAcacc 4021 g--------- ------ACGG --AAGGA-AA C-A(------ ---------- ---------- 4081 ---------- ---------- ugaaa--u-) U-GU-U--UC -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCAGGA(- uaaca-uaa- --)GCCUACU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GUU--GGCC 4261 CUGAGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcu--- 4381 -acca-accc c-ag-auaac uaacccacca cua--uagcc a--------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUAGCAUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.serpe 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Sagittarius serpentarius.; . ACCESSION U83726 KEYWORDS . SOURCE Mitochondrion Sagittarius serpentarius. ORGANISM Mitochondrion Sagittarius serpentarius. REFERENCE 1 (bases 1 to 967) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 967) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83726 BASE COUNT 305 a 275 c 189 g 193 t 4251 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUAAUU -C-AUGC-CA |GA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GAAAA---UG C|CUC-Uauc --uc-au--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----u-a cac-a)---- 1261 ---------- ---------- --aa--gau- --aaAGGAGC |--------- gGGCAUCA-- 1321 -GGCACAC-- -----(ccac ugunnn---- ---------- ---------- ------)--- 1381 ---NU|---A GCCGA--AGA C|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUGAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GUUA-C- AG-CAA---- ---------- ---------- (-cuauua-- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-UA)-C ACAAGA|--- -AAC-CCA-- 1981 AAUUA-ACgu -------aca --CGGC|GUA AAGAGUGGc- -cccuu---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----aauua -uccgagc-a acuaag--au -----|UAAA ACACAC-CUG ----AGCC(G 2341 UCAUA)AGC| UUA------A GAUG-UCCAU AAA------- -----ccc-c -ccu(-caaa 2401 -)gc|g---- ----aucuua guaacaac-- gacua----- acacuaccCC ACGAA-AGCU 2461 A-GG----AU ACNACUGAG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAGA-UUC 2521 U--GAUA-CU |U-|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ --------ga cug(ccac)a a---A-AGUA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -GCAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCC-AAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUACCCC 2821 A--------- ----)CGCUA C-ACCCAACC CCUCCUUGCC ---------- ---------- 2881 (---a----a aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC AC-CA|G-CU CGC-|CUC(C --CCU)GAG- -----(agu- 3181 gca)-----A C-AGCGAGCC CAA-UAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --cgcccc-- 3781 ---------A CAAACA-AGA C-AGGUCAAG G|UAUA|GCu cau------- ---------G 3841 G-A--G-CG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a a----)---- ---------- ---------- UAG-AAcagc 4021 cuuu------ ------ACGG --AAAGG-GA U-A(------ ---------- ---------- 4081 ---------- ---------- ugaaa--u-) U-GU-C--CC -U--AAAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- caaua-gc-- --)GCCCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACC--GGCC 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gcaagc---- 4381 -caua-ccac cuauaacuaa uaugccgcu- -----agcgu ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUAGCAUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.gallo 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Meleagris gallopavo.; . ACCESSION U83741 KEYWORDS . SOURCE Mitochondrion Meleagris gallopavo. ORGANISM Mitochondrion Meleagris gallopavo. REFERENCE 1 (bases 1 to 971) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 971) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83741 BASE COUNT 327 a 253 c 182 g 209 t 4242 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CUA-UUGAUU -U-UUGC-UA |AA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUGCCAGU GAAAA---UG C|CCU--aa- -ccc-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uaaga aa---)---- 1261 ---------- ---------- --ag--aau- --aaAGGaGC |--------- aGGUAUCA-- 1321 -GGCACAC-- -----(-ucu aau------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-uuga-)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UAACCUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GCCA-U- AG-CAA---- ---------- ---------- (-cuuua--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -AAC-CCA-- 1981 AAUCA-AUAG C-------ca ucCGGC|GUA AAGAGUGGu- -cacau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-cua -ucuauacca auuaag--au -----|CAAA GUGUAA-CUA ----AGCU(G 2341 UCAUA)AGC| CCA------A GAUU-CACCU AAG------- ----cccagc -cua(-aaaa 2401 -)au|g---- ----aucuua acuua---ac ga-ucaa--- uuuaaag-CC ACGAA-AGCC 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 U--GAUA-CU |AA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- --u(auac)u c---A-CGUA 2701 U-C|--C|GC C-uGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUC C-ACCCAACC ACCUCUUGCC ---------- ---------- 2881 (-------aa ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUA(A --AAU)GAA- -----(aga- 3181 uca)-----A U-AGUGAGCU CAA-UAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ------ccc- 3781 ---------A CUAACA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 A-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- aca--)---- ---------- ---------- UAG-AAca-g 4021 ---------- ------ACGA --AAAAG-GG C-G(------ ---------- ---------- 4081 ---------- ---------- ugaaa--cu) C-GC-C--CU -U--GGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-Guaagacc auacuucucu uaagccuacU U-AAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GAC--GGCC 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcu--- 4381 -auca-auuu caauaaauaa uacccaacc- cu---agcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-C GUA-CC(GGA 4621 -A)GGU-GC- GCUUAGACUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.cotur 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Coturnix coturnix. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Coturnix coturnix. ORGANISM Mitochondrion Coturnix coturnix. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X57245 DEFINITION C.coturnix mitochondrial nd6 gene for NADH dehydrogenase and tRNA-Glu, tRNA-Phe, tRNA-Val, 12S rRNA & 16S rRNA genes SOURCE Mitochondrion Coturnix coturnix DNA. ORGANISM Coturnix coturnix Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; Neornithes; Neognathae; Galliformes; Phasianidae. REFERENCE 1 (bases 1 to 2814) AUTHORS Desjardins,P. and Morais,R. TITLE Nucleotide sequence and evolution of coding and noncoding regions of a quail mitochondrial genome JOURNAL J. Mol. Evol. 32, 153-161 (1991) COMMENT *source: strain=ssp. Japonica; *source: haplotype=diploid; *source: stage=adult; *source: tissue=liver; See also X57246. From EMBL entry MICCND6; dated 29-AUG-1991. FEATURES Location/Qualifiers CDS complement(<1..230) /product="NADHdehydrogenase" /gene="nd6" /codon_start=1 tRNA complement(232^299) /gene="tRNA-Glu" misc_feature 300..1452 /note="D-loop containing region" tRNA 1453..1520 /gene="tRNA-Phe" rRNA 1521..2491 /gene="12S rRNA" tRNA 2492..2562 /gene="tRNA-Val" rRNA 2563..2814 /gene="16S rRNA" BASE COUNT 330 a 263 c 179 g 199 t 4242 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (CAG-)U-CC U|AACCU-UA CUA-UUGGUU -U-UUGC-UA |GA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUCCCAGU GAGAA---UG C|CCC-acaa accu-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----au cuucc)---- 1261 ---------- ---------- --aa--agc- a-aaaGGAGC |--------- aGGUAUCA-- 1321 -GGCGCAC-- -----(uuua aua------- ---------- ---------- ------)--- 1381 ---GU|--uA GCCCa--AAA C|GCCUU-GU --|------- (ucaa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GCCA-U- AG-CAA---- ---------- ---------- (--------- gaccaca--- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -AGC-CCA-- 1981 AAUCA-AUAG C-------ca ucCGGC|GUA AAGAGUGGcc -a-cau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-uua -ucuucauua acuaag--au -----|CAAA AUGGAA-CCA ----AGCU(G 2341 UCAUA)AGC| CCA------G GAUC-CACCU AAG------- -----cccaa -cau(-aaaa 2401 -)ac|c---- ----aucuua gccacau--- gauca----- auuucaauCC ACGAA-AGCC 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCU 2521 A--GAUA-CC |CA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- --c(auac)u u---A-UGUA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AC CG(AUAAUCC 2821 A--------- ----)CGAUC U-ACCCAACC ACCCCUUGCC ---------- ---------- 2881 (-------aa ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|uu-(- --aau)gaa- -----(aga- 3181 aca)-----A C-AGUGAGCU CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cgcc- 3781 ---------A CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-G-AU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AACAA- 4021 ---------- ------ACGA --AAAAG-GA C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--cc) UGGU-C--CU -U--GGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-AUGGGA(- ucacu-uu-- --)GCCCACU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GAU--GGCC 4261 CUGAGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaagcu--- 4381 -acua-auac cgauaaauaa cacccaacca uua--agcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------AA GACG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUAGACCA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.gallu 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Gallus gallus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Gallus gallus. ORGANISM Mitochondrion Gallus gallus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X52392 DE Chicken mitochondrial genome KW 12S ribosomal RNA; 16S ribosomal RNA; ATPase 6; ATPase 8; OS Mitochondrion Gallus gallus OC Mitochondria; Metazoa; Chordata; Vertebrata; Tetrapoda; Aves; OC Galliformes. RA Desjardins P., Morais R.; RT "Sequence and gene organization of the chicken mitochondrial RT genome: A novel gene order in higher vertebrates"; RL J. Mol. Biol. 212:599-634(1990). FT RRNA 1297 2272 12S ribosomal RNA FT RRNA 2346 3966 16S ribosomal RNA SQ Sequence 16775 BP; 5075 A; 5444 C; 2266 G; 3990 T; 0 other; BASE COUNT 316 a 282 c 178 g 200 t 4237 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aaaAGACU 661 (UAG-)U-CC U|AACCU-UU CUA-UUGGUU -U-UUGC-UA |GA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUCCCAGU GAAAA---UG C|CCC-Caaa -ccu-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---cuuc cc---)---- 1261 ---------- ---------- ---a--agc- a-aAAGGAGC |--------- aGGUAUCA-- 1321 -GGCACAC-- -----(ucag ca-------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (uuaa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-AU UAACCUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GCCA-U- AG-CAA---- ---------- ---------- (--------- ---ccca--- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -AAC-CCA-- 1981 AAUCA-AUAG C-------ua ccCGGC|GUA AAGAGUGGcc -a-cau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-uua -ucugcacca gcuaag--au -----|UAAA AUGCAA-CCA ----AGCU(G 2341 UCAUA)AGC| CUA------A GAUC-CACCU AAA------- -----cccaa -ccc(-aaa- 2401 -)uc|c---- ----aucuua gccuc-aac- gauua----- auuuuaacCC ACGAA-AGCU 2461 A-GGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCU 2521 A--GAUA-CC |UC|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- cca(ucac)a c---A-UGUA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUU C-ACCCAACC ACCCCUUGCC ---------- ---------- 2881 (-------ag ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(U --AAU)GAA- -----(aga- 3181 aca)-----A C-AGUGAGCU CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cccuc- 3781 ---------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-G-GU-GG- -G-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ca---)---- ---------- ---------- UAG-AACAA- 4021 ---------- ------ACGA --AAAAG-GA U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--cc) C-GC-C--CU -U--AGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-GUGAGA(u cauacccccu aa)GCUCACU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GAC--GGCU 4261 CUGAGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcc--- 4381 aucaa-cauc aaua-aauau auacuucccc uccc-ggcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------AA GACG-AGG-C AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGACUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.colch 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Phasianus colchicus.; . ACCESSION U83742 KEYWORDS . SOURCE Mitochondrion Phasianus colchicus. ORGANISM Mitochondrion Phasianus colchicus. REFERENCE 1 (bases 1 to 965) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 965) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83742 BASE COUNT 317 a 272 c 182 g 194 t 4248 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CUA-UUGAUU -U-UUGC-UA |GA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACACCAGU GAAAA---UG C|CCU--aa- -cau-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--ucaac a----)---- 1261 ---------- ---------- --ag--aaa- ---aAGGaGC |--------- aGGUAUCA-- 1321 -GGCACAC-- -----(ccua aaa------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|ACCUU-GC --|------- (-caua-)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UAACCUUAAG C-AAUGAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GCCA-U- AG-CAA---- ---------- ---------- (ucuca---- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -AAC-CCG-- 1981 AAUCA-AUAG C-------ca acCGGC|GUA AAGAGUGGu- -cauau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-uua -uccucauca ccuaag--au -----|CGAA GUACAA-CUA ----AGCU(G 2341 UCAUA)AGC| CCA------A GAUC-UUCCU AAG------- ---------c -ucc(-ccaa 2401 -)aa|c---- ----aucuua gcucc---ac ga-cua---- auuuuaccCC ACGAA-AGCC 2461 A-GGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 A--GAUG-CC |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- --c(auac)c c---A-UGCA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUC C-ACCCAACC ACCCCUUGCC ---------- ---------- 2881 (-------aa ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CU-(a --aau)GAA- -----(agg- 3181 cca)-----A C-AGUGAGCU CAA-CAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ccacc- 3781 ---------A CUAGCA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- aua--)---- ---------- ---------- UAG-AAuaa- 4021 ---------- ------ACGA --AAAAG-GA C-G(------ ---------- ---------- 4081 ---------- ---------- ugaaa--cc) C-GU-C--CU -U--GGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-Guaggacc auaccucuuc aa)gccuacU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GAC--GGCC 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< guaggcc--- 4381 -acca-auac uaauaaauaa uaccuacau- ca---agcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GACG-AGG-U AAGUCGUAAC AAGGUAAG-C GUA-CC(GGA 4621 -A)GGU-GC- GCUUAGACCA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.umbel 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Bonasa umbellus.; . ACCESSION U83740 KEYWORDS . SOURCE Mitochondrion Bonasa umbellus. ORGANISM Mitochondrion Bonasa umbellus. REFERENCE 1 (bases 1 to 966) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 966) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83740 BASE COUNT 318 a 273 c 177 g 198 t 4247 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CUA-UUGAUU -U-UUGC-CA |GA-UA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUUCCAGU GAAAA---UG C|CCU-uaua -ccu-u---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uaacc -----)---- 1261 ---------- ---------- ---a--agu- a-aaAGGaGC |--------- aGGUAUCA-- 1321 -GGCUCAC-- -----(ccaa gc-------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|ACCUU-GC --|------- (-uaa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UAACCUUAAG C-AAUGAGU( ---------- ----GAAA)A CUUGA-CUU| 1561 A|-GCCA-U- GG-CAA---- ---------- ---------- (---ccuca- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -AAC-CCA-- 1981 AAUCA-AUAG C-------cu ccCGGC|GUA AAGAGUGGc- -cauau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-uua -ucuccaaca acuaag--au -----|CAAA ACGUAA-CUA ----AGCU(G 2341 UCAUA)AGC| CCA------U GAUC-CUCUU AAG------- -------ccc -acu(--caa 2401 -)cc|c---- ----aucuua gcucu---ac ga-cca---- auuuaaacCC ACGAA-AGCC 2461 A-GGG---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUUAA-UCC 2521 A--GAUA-CC |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- --u(auac)c c----CUGUA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUC C-ACCCAACC ACCUCUUGCC ---------- ---------- 2881 (-------ca aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUA(A --AAU)GAA- -----(aga- 3181 cua)-----A C-AGUGAGCU CAA-UAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cccc- 3781 ---------A CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ca---)---- ---------- ---------- UAG-AAcaa- 4021 ---------- ------ACGA --AAAAG-GG C-G(------ ---------- ---------- 4081 ---------- ---------- ugaaa--cu) C-GU-C--CU -U--AGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-AUAGGA(c cauacccucc aa)gccuacU U-uaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GAC--GGCU 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< auaagcc--- 4381 -acaa-acuc caauaaauaa uaccacaccc aua--agcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAAG-AGG-U AAGUCGUAAC AAGGUAAG-C GUA-CC(GGA 4621 -A)GGU-GC- GCUUAGACUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.immer 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Gavia immer. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Gavia immer. ORGANISM Mitochondrion Gavia immer. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L33374 ID MIGIZGI unannotated; circular DNA; ORG; 365 BP. XX AC L33374; XX DT 25-NOV-1994 (Rel. 41, Created) DT 25-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE Gavia immer mitochondrial 12S ribosomal RNA (12S rRNA) gene, 3' DE end. XX KW 12S ribosomal RNA; 12S rRNA. XX OS Gavia immer OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; OC Neornithes; Neognathae; Ciconiiformes; Procellarioidea; Gaviidae. XX OG Mitochondrion XX RN [1] RP 1-365 RA Hedges S.B., Sibley C.G.; RT "Molecules vs. morphology in avian evolution: The case of the RT 'pelecaniform' birds"; RL Proc. Natl. Acad. Sci. U.S.A. 91:9861-9865(1994). XX CC NCBI gi: 559030 XX FH Key Location/Qualifiers FH FT source 1..365 FT /organism="Gavia immer" FT /mitochondrion FT /sub_species="immer" FT /sequenced_mol="DNA" FT rRNA 1..365 FT /partial FT /gene="12S rRNA" FT /note="putative" FT /product="12S ribosomal RNA" XX SQ Sequence 365 BP; 113 A; 107 C; 80 G; 65 T; 0 other; BASE COUNT 113 a 107 c 80 g 65 t 4848 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~C- CCUAAA-UCU 2521 U--GAUG-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(ccac)u g---A-AGCA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA U-ACCCAACC GUCCCUUGCC ---------- ---------- 2881 (-------ac ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUC(U A-CCU)GAG- -----(agu- 3181 gca)-----a c-AGUGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -ccuacgcc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCU CAU------- ---------G 3841 G-G-GC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ga---)---- ---------- ---------- UAG-AAaac- 4021 ---------- ------ACGA --AAAGG-GG U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) U-AC-C--CC -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- caaua-aa-- --)GCCCCC~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.G.stell 5213 bp RNA RNA 11-JAN-191 DEFINITION Gavia stellata. ACCESSION No information KEYWORDS No information. SOURCE Gavia stellata. ORGANISM Gavia stellata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L33376 ID MIGSZGS unannotated; circular DNA; ORG; 369 BP. XX AC L33376; XX DT 25-NOV-1994 (Rel. 41, Created) DT 25-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE Gavia stellata mitochondrial 12S ribosomal RNA (12S rRNA) gene, 3' DE end. XX KW 12S ribosomal RNA; 12S rRNA. XX OS Gavia stellata OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; OC Neornithes; Neognathae; Ciconiiformes; Procellarioidea; Gaviidae. XX OG Mitochondrion XX RN [1] RP 1-369 RA Hedges S.B., Sibley C.G.; RT "Molecules vs. morphology in avian evolution: The case of the RT 'pelecaniform' birds"; RL Proc. Natl. Acad. Sci. U.S.A. 91:9861-9865(1994). XX CC NCBI gi: 559031 XX FH Key Location/Qualifiers FH FT source 1..369 FT /organism="Gavia stellata" FT /mitochondrion FT /sequenced_mol="DNA" FT rRNA 1..369 FT /partial FT /gene="12S rRNA" FT /note="putative" FT /product="12S ribosomal RNA" XX SQ Sequence 369 BP; 118 A; 105 C; 78 G; 64 T; 4 other; BASE COUNT 118 a 105 c 78 g 64 t 4848 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~N- NNUAAA-UCU 2521 U--GAUG-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(cuac)u n---A-AGCA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCAACC AUCCCUUGCC ---------- ---------- 2881 (-------ac ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUC(U A-CCU)GAG- -----(agc- 3181 aua)-----g c-AGUGAGCG CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)cc aacagacauc 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 G-G-AC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g aa---)---- ---------- ---------- UAG-AAaac- 4021 ---------- ------ACGA --AAAGG-GG U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) U-AC-C--CC -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- caaua--aa- --)gccccc~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.defos 5213 bp RNA RNA 21-OCT-1997 DEFINITION Mitochondrion Aptornis defossor.; . ACCESSION U76019 KEYWORDS . SOURCE Mitochondrion Aptornis defossor. ORGANISM Mitochondrion Aptornis defossor. REFERENCE 1 (bases 1 to 673) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G.A. TITLE Phylogeny and evolution of 12S rDNA in Gruiformes (Aves) JOURNAL (in) Mindell,D.P. (Ed.); AVIAN MOL EVOL SYST: Academic Pres; Academic Press (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 673) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G. A. TITLE Direct Submission JOURNAL Submitted (24-OCT-1996) Biology, New Mexico State University, Box 30001 / Dept. 3AF, Las Cruces, NM 88003, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U76019 BASE COUNT 230 a 189 c 125 g 129 t 4540 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~-~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ -~~~~---~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~-)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~-~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~-~ 1501 ~~~|~~A-AU UAACAUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GUUA-U- GG-CAA---- ---------- ---------- (--------- -cauaua--- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -AGC-CCA-- 1981 AAUUA-ACUG U-------aa uccGGC|GUA AAGAGUGGc- -aacau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----gcuau ----caccca acuaag--au -----|CAAA AUGCAC-CUA ----AGCU(G 2341 UUAUA)AGC| UCA------U GAUG-CACUU AAG------- -----accac -ccu(-caaa 2401 -)ac|g---- ----auccua gcacuaac-- gauca----- auu-auacCC ACGAA-AGCC 2461 A-GGG---CA CAAACUGAG( AUUAGACAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCC 2521 A--GAUG-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cu(ucac)c a---A-AGUA 2701 U-C|--C|GC C-uGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGCUA C-ACCCGACC GCCUCUCGCC ---------- ---------- 2881 (--ac---aa ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CACc|uuc(a --cu-)gaaa -----(gcc- 3181 cca)-----A C-AGUGAGCA CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caccc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 A-G-AC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAuacc 4021 cca------- ------ACGA --AAGAG-GA A-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--CC) U-UU-C--CC -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GAAAAA(- caaca-au-- --)GUUUUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -acca-GGCC 4261 CUGGGG-C~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.guara 5213 bp RNA RNA 21-OCT-1997 DEFINITION Mitochondrion Aramus guarauna.; . ACCESSION U76014 KEYWORDS . SOURCE Mitochondrion Aramus guarauna. ORGANISM Mitochondrion Aramus guarauna. REFERENCE 1 (bases 1 to 865) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G.A. TITLE Phylogeny and evolution of 12S rDNA in Gruiformes (Aves) JOURNAL (in) Mindell,D.P. (Ed.); AVIAN MOL EVOL SYST: Academic Pres; Academic Press (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 865) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G. A. TITLE Direct Submission JOURNAL Submitted (24-OCT-1996) Biology, New Mexico State University, Box 30001 / Dept. 3AF, Las Cruces, NM 88003, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U76014 BASE COUNT 285 a 244 c 160 g 173 t 4351 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --nnnAGACU 661 (UAG-)U-CC U|AACCU-UA CAG-UUAAUU -C-UUGC-CA |AA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GUAAA---UG C|CCU-caac --cc-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--aacaa ucuu-)---- 1261 ---------- ---------- --ag--gc-- --aAAGGAGC |--------- GGGUAUCA-- 1321 -GGCACAC-- -----(ccac caguc----- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG CAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GUUA-U- GG-CAA---- ---------- ---------- (--------- ---ccua--- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -AAC-CCA-- 1981 AAUUA-AC-G U-------aa caCGGC|GUA AAGAGUGGu- -auuau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-cua -ucacaacaa -cuaag--au -----|UAAA AUGCAA-CUA ----AGCC(G 2341 UCAUA)AGC| CUA------A GAUG-CACCU AAA------- -----aucac -cau(-uaaa 2401 -)ac|g---- ----aucuua gcaaccau-- gaucc----- auuaaacuCC ACGAA-AGCU 2461 A-GGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCU 2521 C--AAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cu(ccac)u a---A-AGUA 2701 U-U|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AC CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCAACC ACUUCUUGCC ---------- ---------- 2881 (-------aa cg-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC CC-CA|G-CU CAC-|CUC(C --CCU)GAG- -----(agg- 3181 aca)-----A C-AGUGAGCA CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --ccaaccc- 3781 ---------G CUAGUA-AGA C-AGGUCAAG G|UAUA|GCC CAC------- ---------G 3841 A-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAaauu 4021 uc-------- ------ACGG --AAGGG-GG U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) C-UC-C--CC -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AUGGAA(- caaua-aa-- --)GUCCCUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GUU--GGCC 4261 CUGAGG-CA- CGUACAUA-C -CGCCC~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.crist 5213 bp RNA RNA 21-OCT-1997 DEFINITION Mitochondrion Cariama cristata.; . ACCESSION U76024 KEYWORDS . SOURCE Mitochondrion Cariama cristata. ORGANISM Mitochondrion Cariama cristata. REFERENCE 1 (bases 1 to 861) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G.A. TITLE Phylogeny and evolution of 12S rDNA in Gruiformes (Aves) JOURNAL Academic Press (1997) In press (in) Mindell,D.P. (Ed.); AVIAN MOL EVOL SYST: Academic Pres; STANDARD No information REFERENCE 2 (bases 1 to 861) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G. A. TITLE Direct Submission JOURNAL Submitted (24-OCT-1996) Biology, New Mexico State University, Box 30001 / Dept. 3AF, Las Cruces, NM 88003, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U76024 BASE COUNT 264 a 254 c 184 g 159 t 4352 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aagAGACU 661 (UAG-)U-CC U|AACCU-UG CCA-UUAAUU cC-CCGC-UA |AA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACGCCAGU GUAAA---UG C|CCA-cagc -cgc-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----ua cca--)---- 1261 ---------- ---------- --ag--gca- --aAAGGAGC |--------- AGGCAUCA-- 1321 -GGCGCAC-- -----(uuac gacu------ ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUGAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CAA---- ---------- ---------- (--------- --cccaa--- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GGC-CCA-- 1981 AAUUA-AUCG C-------ua aaCGGC|GUA AAGCGUGGc- -acuac---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----c-cua -ucacagca- acuaag--au -----|CAAA AUGCAA-UCG ----AGCU(G 2341 UCAUA)AGC| CUA------A GCUG-CACCA AAG------- -----accgc -cuu(-aaag 2401 -)au|g---- ----aucuca gccccucu-- gauu------ gacuacgcCC ACGAA-AGCC 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CUUAAA-UCU 2521 A--GAUG-CU |CA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(guac)c c---A-AGCA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUG--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCGCCC GCUUCUUGCC ---------- ---------- 2881 (-------aa ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC AC-CA|G-UC CAC-|CUC(u g-uga)GAG- -----(--a- 3181 aua)-----A U-AGUGGGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ccccgc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 A-A-GC-GG- -A-AGA--GA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AGaacu 4021 c--------- ------ACGA --AAGCG-GG U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) C-AC-C--CC -C--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GUGGGA(- uaaua-aa-- --)GCCCCCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GUU--GGCC 4261 CUGGGG-CA- CGUACAUA-C -CGCCC~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.E.helia 5213 bp RNA RNA 21-OCT-1997 DEFINITION Mitochondrion Eurypyga helias.; . ACCESSION U76025 KEYWORDS . SOURCE Mitochondrion Eurypyga helias. ORGANISM Mitochondrion Eurypyga helias. REFERENCE 1 (bases 1 to 872) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G.A. TITLE Phylogeny and evolution of 12S rDNA in Gruiformes (Aves) JOURNAL Academic Press (1997) In press (in) Mindell,D.P. (Ed.); AVIAN MOL EVOL SYST: Academic Pres; STANDARD No information REFERENCE 2 (bases 1 to 872) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G. A. TITLE Direct Submission JOURNAL Submitted (24-OCT-1996) Biology, New Mexico State University, Box 30001 / Dept. 3AF, Las Cruces, NM 88003, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U76025 BASE COUNT 272 a 247 c 175 g 175 t 4344 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aaaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUAAUU -U-UUGC-UA |AG-UA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GUAAA---UG C|CCC-ug-- ucac-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----uua uca--)---- 1261 ---------- ---------- --ag--aug- --aAGGGGGC |--------- uGGUAUCA-- 1321 -GGCACAC-- -----(guuc aacc------ ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GCAA)A CUUGA-CUU| 1561 A|-GCUA-U- AG-CAG---- ---------- ---------- (------uuc cuacaua--- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GGC-UCA-- 1981 AAUUA-ACNN GU-------c cgCGGC|GUA AAGAGUGGu- -acaau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-uua -acngcacaa acuaag--ac -----|CAAA AUACAA-CUA ----AGCU(G 2341 UCAUA)AGC| CCA------A GAUG-UACCU AAG------- -----ccucc -cau(-caaa 2401 -)au|g---- ----gccuua g-caccuuc- guucu----- auuuaaacCC ACUAA-AGCU 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCC 2521 A--GGUG-UU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(cuac)c c---U-AACA 2701 C-C|--C|GC C-AGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCAACC CUCCCUAGca ---------- ---------- 2881 (-------ag ga-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC UAC-|CUC(A --UCU)GAG- -----(agc- 3181 acu)-----A C-AGUGGGCA AAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --cuaccuc- 3781 ---------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 A-G-AG-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-gc aa---)---- ---------- ---------- UAG-AAcaca 4021 u--------- ------ACGG A-ACAGG-GG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) U-GC-C--CC -C--AGAAG- -GUGGAUUUA 4141 G-C--AGUAA A-GAGGGA(- caaua-uaa- --)GCCCCCU U-AAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GAU--GGCU 4261 CUGGGG-CA- CGUACAUA-C -CGCCC~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.B.pavon 5213 bp RNA RNA 21-OCT-1997 DEFINITION Mitochondrion Balearica pavonina.; . ACCESSION U76013 KEYWORDS . SOURCE Mitochondrion Balearica pavonina. ORGANISM Mitochondrion Balearica pavonina. REFERENCE 1 (bases 1 to 872) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G.A. TITLE Phylogeny and evolution of 12S rDNA in Gruiformes (Aves) JOURNAL Academic Press (1997) In press (in) Mindell,D.P. (Ed.); AVIAN MOL EVOL SYST: Academic Pres; STANDARD No information REFERENCE 2 (bases 1 to 872) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G. A. TITLE Direct Submission JOURNAL Submitted (24-OCT-1996) Biology, New Mexico State University, Box 30001 / Dept. 3AF, Las Cruces, NM 88003, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U76013 BASE COUNT 272 a 247 c 173 g 180 t 4341 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aaaAGACU 661 (UAG-)U-CC U|AACCU-UA CUG-UUAAUU -C-UUGC-CA |AA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GUAAA---UG C|CCU-Caau -ccc-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----guc ccc--)---- 1261 ---------- ---------- --ua--ggc- a-gGAGGAGC |--------- aGGUAUCA-- 1321 -GGCACAC-- -----(ccac agcu------ ---------- ---------- ------)--- 1381 ---GU|---A GCCUA--AGA C|GCCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GGAA)G CUUGA-CUU| 1561 A|-GUUA-U- GG-CAA---- ---------- ---------- (--------- -caccua--- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCUACC-GC -GGU-CA)-U ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACGU AA-------- caCGGC|GUA AAGAGUGGu- -auuau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-cua -ucauaac-a acuaag--au -----|CAAA ACGCAA-CUG ----AGCU(G 2341 UCAUA)AGC| CUA------A GCUG-CAUCU AAA------- --------ac -cau(-uguc 2401 -)aa|a---- ----acaauc uuagcaacca ugacug---- auuaaaccCC ACGAA-AGCU 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 C--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- ccc(ccac)u g---A-AGUA 2701 U-C|--C|GC C-UGGG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUC C-ACCCGACC ACUCCUUGCC ---------- ---------- 2881 (-------aa cg-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUC(U --UCU)GAG- -----(agc- 3181 ccu)-----A C-AGUGGGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)cc cuccccacgc 3781 ---------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 G-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAgacu 4021 c--------- ------ACGA --AAAGG-GG A-C(------ ---------- ---------- 4081 ---------- ---------- ugaaa--c-) U-CU-C--CC -C-uAGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GAGAAA(- uaaua-au-- --)GUCCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GUC--GGCU 4261 CUGAGG-CA- CGUACAUA-C -CGCCC~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.G.canad 5213 bp RNA RNA 21-OCT-1997 DEFINITION Mitochondrion Grus canadensis.; . ACCESSION U76012 KEYWORDS . SOURCE Mitochondrion Grus canadensis. ORGANISM Mitochondrion Grus canadensis. REFERENCE 1 (bases 1 to 869) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G.A. TITLE Phylogeny and evolution of 12S rDNA in Gruiformes (Aves) JOURNAL Academic Press (1997) In press (in) Mindell,D.P. (Ed.); AVIAN MOL EVOL SYST: Academic Pres; STANDARD No information REFERENCE 2 (bases 1 to 869) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G. A. TITLE Direct Submission JOURNAL Submitted (24-OCT-1996) Biology, New Mexico State University, Box 30001 / Dept. 3AF, Las Cruces, NM 88003, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U76012 BASE COUNT 266 a 245 c 169 g 169 t 4364 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---NNNNNNN 661 (NNNN)N-NN N|NNNNN-UA CCG-UUAAUU -C-UUGC-CA |AA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GUAAA---UG C|CCU-Cgga -ccc-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----ucu ccua-)---- 1261 ---------- ---------- --ua--ggc- a-aGAGGAGC |--------- aGGUAUCA-- 1321 -GGCACAC-- -----(ccac agcu------ ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|ACCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGC( ---------- ----GUAA)G CUUGA-CUU| 1561 A|-GUUA-U- GG-CAA---- ---------- ---------- (--------- -uacuca--- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACUG UA-------a caCGGC|GUA AAGAGUGGc- -acuau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-uua -uc-gcagca acuaag--au -----|CAAA GUACAA-CUG ----AGCU(G 2341 UCAUA)AGC| CCA------A GAUG-UAUCU AAA------- -----accac -cau(-uaag 2401 -)ac|a---- ----aucuua gcaac-acc- gacaa----- auucaacuCC ACGAA-AGCU 2461 A-GGG---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCU 2521 C--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(ccac)u g---A-AGUA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA U-ACCCAACC ACUUCUUGCC ---------- ---------- 2881 (-------ag ug-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUC(C --UCU)GAG- -----(agc- 3181 cca)-----A C-AGUGAGCA CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- cccccaccc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC CAC------- ---------G 3841 G-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AUaacc 4021 c--------- ------ACGG --AAGGG-GG U-G(------ ---------- ---------- 4081 ---------- ---------- ugaaa--c-) C-UC-C--CC -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GUGGGA(- caaua-au-- --)GCCCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCU--GGCC 4261 CUGGAG-CA- CGUACAUA-C -CGCCC~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.G.virgo 5213 bp RNA RNA 21-OCT-1997 DEFINITION Mitochondrion Grus virgo.; . ACCESSION U76011 KEYWORDS . SOURCE Mitochondrion Grus virgo. ORGANISM Mitochondrion Grus virgo. REFERENCE 1 (bases 1 to 868) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G.A. TITLE Phylogeny and evolution of 12S rDNA in Gruiformes (Aves) JOURNAL (in) Mindell,D.P. (Ed.); AVIAN MOL EVOL SYST: Academic Pres; Academic Press (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 868) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G. A. TITLE Direct Submission JOURNAL Submitted (24-OCT-1996) Biology, New Mexico State University, Box 30001 / Dept. 3AF, Las Cruces, NM 88003, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U76011 BASE COUNT 271 a 251 c 172 g 170 t 4349 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --nnnNGACU 661 (UAG-)U-CC U|AACCU-UA CUG-UUAAUU -c-UUGC-CA |AA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUCCCAGU GUAAA---UG C|CCU-Cgga -ccc-ua--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----ucu cuua-)---- 1261 ---------- ---------- --ua--ggc- a-aGAGGAGC |--------- aGGUAUCA-- 1321 -GGCACAC-- -----(ccac agcu------ ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|ACCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGC( ---------- ----GCAA)G CUUGA-CUU| 1561 A|-GUUA-U- GG-CAA---- ---------- ---------- (--------- -uacuca--- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACUG UA-------a caCGGC|GUA AAGAGUGG-- -cacua---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----cguua -uc-gcagca acuaag--au -----|CAAA GCACAA-CUG ----AGCU(G 2341 UCAUA)AGC| CCA------A GAUG-UGUCU AAA------- -----accac -cau(-caag 2401 -)ac|g---- ----aucuua gcaacaac-- gauaa----- auuaaaccCC ACGAA-AGCU 2461 A-GGG---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCU 2521 C--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(cuac)u g---A-AGUA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCAACC ACUCCUUGCC ---------- ---------- 2881 (-------ag ug-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUC(C --CCU)GAG- -----(agu- 3181 cca)-----A C-AGUGAACA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -ccccgccc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC CAC------- ---------G 3841 G-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AUaacc 4021 c--------- ------ACGG --AAGGG-GG U-G(------ ---------- ---------- 4081 ---------- ---------- ugaaa--c-) C-UC-C--CC -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GUGGGA(- caaua-au-- --)GCCCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACU--GGCC 4261 CUGGAG-CA- CGUACAUA-C -CGCCC~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.H.fulic 5213 bp RNA RNA 21-OCT-1997 DEFINITION Mitochondrion Heliornis fulica.; . ACCESSION U76020 KEYWORDS . SOURCE Mitochondrion Heliornis fulica. ORGANISM Mitochondrion Heliornis fulica. REFERENCE 1 (bases 1 to 867) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G.A. TITLE Phylogeny and evolution of 12S rDNA in Gruiformes (Aves) JOURNAL Academic Press (1997) In press (in) Mindell,D.P. (Ed.); AVIAN MOL EVOL SYST: Academic Pres; STANDARD No information REFERENCE 2 (bases 1 to 867) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G. A. TITLE Direct Submission JOURNAL Submitted (24-OCT-1996) Biology, New Mexico State University, Box 30001 / Dept. 3AF, Las Cruces, NM 88003, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U76020 BASE COUNT 290 a 221 c 176 g 179 t 4347 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aacAGACU 661 (UAG-)U-CC U|AACCU-UA CYG-UUAGUU -U-CUAC-CA |AA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auu c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACACCAGU GUAAA---UG C|CCA-cga- -cuu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---aaau u----)---- 1261 ---------- ---------- --ag--auu- g--GAGGAGC |--------- aGGCAUCA-- 1321 -GGC-GCG-- -----(caaa uuaauu---- ---------- ---------- ------)--- 1381 ---GC|---A GCCCA--AGA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UGACAUUAAG C-AAUAAGU( ---------- ----GAAA)G CUUGA-CUU| 1561 A|-GUUA-U- GG-UAG---- ---------- ---------- (-----aacu caacuca--- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCU|-GGU 1921 -UAA-U---C UUGU-G(-CC AGCUACC-GC -GGU-CA)-U ACAAGA|--- -AGC-CCA-- 1981 AAUUA-ACGG UA-------g ugCGGC|GUA AAGAGUGGc- -gcaau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------aaua -ucac--gca acuaag--ac -----|AGAG AUGCAA-CUG ----AGCU(G 2341 UCAUA)AGC| CUA------U GAUG-CAUAU AAG------- -----uccaa -cau(-caag 2401 -)ac|g---- ----aucuua gcaa-aaaa- gauu------ aacuacagCC ACUAA-AGCU 2461 A-AGG----C CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-UCA 2521 U--GGUA-CU |CA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -ca(guac)u a---G-AGUA 2701 C-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCAACC ACUUCUAGCC ---------- ---------- 2881 (-------ua ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC CC-CA|G-CC CAC-|CUU(A --CAU)GAG- -----(aga- 3181 uau)----aa u-AGUGAGCU CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caccc- 3781 ---------G CUAGUA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 A-A-GU-GG- -G-AGA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa -a---)---- ---------- ---------- UAG-AAuaua 4021 ---------- ------ACGG --AAAGG-GA A-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAauac) C-UU-C--CC -U--GGAAG- -gcGGAUUUA 4141 G-C--AGUAA A-CUGGAA(- caaua-aa-- --)GUCCAAU U-CAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCA--GGCC 4261 CUAGGG-CA- CGUACAUA-C -CGCCC~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.seneg 5213 bp RNA RNA 21-OCT-1997 DEFINITION Mitochondrion Podica senegalensis.; . ACCESSION U76021 KEYWORDS . SOURCE Mitochondrion Podica senegalensis. ORGANISM Mitochondrion Podica senegalensis. REFERENCE 1 (bases 1 to 336) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G.A. TITLE Phylogeny and evolution of 12S rDNA in Gruiformes (Aves) JOURNAL (in) Mindell,D.P. (Ed.); AVIAN MOL EVOL SYST: Academic Pres; Academic Press (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 336) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G. A. TITLE Direct Submission JOURNAL Submitted (24-OCT-1996) Biology, New Mexico State University, Box 30001 / Dept. 3AF, Las Cruces, NM 88003, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U76021 BASE COUNT 118 a 89 c 64 g 65 t 4877 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~C 2521 U--GAUA-CU |UC|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -ca(auac)u a---A-AGUA 2701 U-C|--C|GC C-AGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCGACC ACUUCUAGCC ---------- ---------- 2881 (-cca---aa -g-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC CC-CA|G-CU CAC-|CUU(A --UAU)GAA- -----(agc- 3181 aca)----aa c-aGUGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caccc- 3781 ---------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 A-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ac---)---- ---------- ---------- UAG-AAaa-- 4021 auca------ ------ACGA --AAAGG-GA G-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--A-) U-CU-C--CC -U--AGAAG- -UAGGAUUUA 4141 G-C--AGU~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.unico 5213 bp RNA RNA 21-OCT-1997 DEFINITION Mitochondrion Mesitornis unicolor.; . ACCESSION U76022 KEYWORDS . SOURCE Mitochondrion Mesitornis unicolor. ORGANISM Mitochondrion Mesitornis unicolor. REFERENCE 1 (bases 1 to 858) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G.A. TITLE Phylogeny and evolution of 12S rDNA in Gruiformes (Aves) JOURNAL Academic Press (1997) In press (in) Mindell,D.P. (Ed.); AVIAN MOL EVOL SYST: Academic Pres; STANDARD No information REFERENCE 2 (bases 1 to 858) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G. A. TITLE Direct Submission JOURNAL Submitted (24-OCT-1996) Biology, New Mexico State University, Box 30001 / Dept. 3AF, Las Cruces, NM 88003, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U76022 BASE COUNT 267 a 245 c 171 g 175 t 4355 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aaaAGACU 661 (UAG-)U-CC U|AACCU-UG CUA-UUAACU -C-UUGC-CU |AA-CA--CA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------aua c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GCAAA---UG C|CCU----c -agcccu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----ua uua--)---- 1261 ---------- ---------- --ag--aca- --cgAGGAGC |--------- AGACAUCA-- 1321 -GGCACGC-- -----(gcau a--------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GUCUU-GC --|------- (-cuc--)-- -------GC| 1441 CACU------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-GU UAAUAUUAAG C-CAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GUUA-A- GG-CAC---- ---------- ---------- (--------- ---ucaa--- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCGCC-GC -GGU-CA)-U ACAAGA|--- -GGC-CCA-- 1981 AGUUA-ACCA C--------a caCGGC|GUA AAGAGUGGg- --cacc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----accau -auuaccaua gccaga--ac -----|CAAA AUGUac-cca ----UGCU(G 2341 UCAUA)AGC| UCA------C GAUA-CACCU AAA------- -----gccgu ----(-caac 2401 -)ac|a---- ----guucug acucccgu-- gauua----- accuaaccCC ACGAA-AGCU 2461 A-GGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCU 2521 C--GAUG-CC |CG|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- acc(uuac)u a---A-AACA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -AUAAAC)GC UUa--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 C--------- ----)CGAUC C-ACCUAACC ACUUCUUGCU ---------- ---------- 2881 (---a---aa au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-UU CACc|UUC(c --uu-)GAA- -----(agc- 3181 cca)-----A U-AGUGAUCA UAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---caguuu- 3781 ---------G CUAAUA-AGG C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 A-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uc aa---)---- ---------- ---------- UAG-GAaacu 4021 uu-------- ------ACGG --AAAAG-GG U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) U-GC-C--CU -U--AGAAG- -GaGGAUUUA 4141 G-C--AGUAA A-GCGGGA(c aacga-ga-- --)GCCAGCU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACC--GGCC 4261 CUGGGG-CA- CGUACAUA-C -CGCCC~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Arde.sp 5213 bp RNA RNA 21-OCT-1997 DEFINITION Mitochondrion Ardeotis sp.; . ACCESSION U76023 KEYWORDS . SOURCE Mitochondrion Ardeotis sp. ORGANISM Mitochondrion Ardeotis sp. REFERENCE 1 (bases 1 to 871) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G.A. TITLE Phylogeny and evolution of 12S rDNA in Gruiformes (Aves) JOURNAL Academic Press (1997) In press (in) Mindell,D.P. (Ed.); AVIAN MOL EVOL SYST: Academic Pres; STANDARD No information REFERENCE 2 (bases 1 to 871) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G. A. TITLE Direct Submission JOURNAL Submitted (24-OCT-1996) Biology, New Mexico State University, Box 30001 / Dept. 3AF, Las Cruces, NM 88003, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U76023 BASE COUNT 277 a 240 c 169 g 185 t 4342 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aagAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUAAUU -U-UUGC-CA |AA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGUUCCAGU GUAAA---UG C|CCA-agcc --cc-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---uaca uauu-)---- 1261 ---------- ---------- --ag--gcc- --aAAGGAGC |--------- GGGCAUCA-- 1321 -GGCGCAC-- -----(cacu agua------ ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-UAUAAGU( ---------- ----GAAA)A CUUGA-CUU| 1561 A|-GUUA-C- GG-CAA---- ---------- ---------- (-------cc uuuuuaa--- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GGC-CCA-- 1981 AAUUA-ACUG U--------a caCGGC|GUA AAGCGUGGu- -gacau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-uua -ucauaac-a acuaag--ac -----|CAAA AUGUAA-CUA ----AGCU(G 2341 UCAUA)AGC| UCA------A GAUA-CACUU AAA------- -----aucac -ccu(-caaa 2401 -)ac|g---- ----aucuua gcacuaucu- gaucga---- uuacacccCC ACGAA-AGCU 2461 A-AGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-UCC 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cu(ccac)c c---A-UGUA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC-GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUA- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCAACC ACUUCUUGCa ---------- ---------- 2881 (---c---aa ga-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CCC(a c-uga)GGG- -----(--u- 3181 gca)-----A C-AGUGAGCA UAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --cccuccc- 3781 ---------G CUAGCA-AGA C-AGGUCAAG G|UAUA|GCC UAC------- ---------G 3841 A-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g aa---)---- ---------- ---------- UAG-AAaauu 4021 cu-------- ------ACGA --AAGGG-AG U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) U-AC-U--CC -C--GGAAG- -GCGGAUUUA 4141 G-U--AGUAA A-GUGGGA(- uaauc-aa-- --)GCCCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACC--GGCC 4261 CUGGGG-UA- CGUACAUA-C -CGCCC~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.crepi 5213 bp RNA RNA 21-OCT-1997 DEFINITION Mitochondrion Psophia crepitans.; . ACCESSION U76015 KEYWORDS . SOURCE Mitochondrion Psophia crepitans. ORGANISM Mitochondrion Psophia crepitans. REFERENCE 1 (bases 1 to 873) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G.A. TITLE Phylogeny and evolution of 12S rDNA in Gruiformes (Aves) JOURNAL (in) Mindell,D.P. (Ed.); AVIAN MOL EVOL SYST: Academic Pres; Academic Press (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 873) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G. A. TITLE Direct Submission JOURNAL Submitted (24-OCT-1996) Biology, New Mexico State University, Box 30001 / Dept. 3AF, Las Cruces, NM 88003, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U76015 BASE COUNT 260 a 259 c 185 g 169 t 4340 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aaaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUAAUU -U-UUGC-CA |AA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GUAAA---UG C|CCU-cagc -ccg-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uacuu augua)---- 1261 ---------- ---------- --gg--cac- a-gAUGGAGC |--------- GGGUAUCA-- 1321 -GGCACGC-- -----(cugc agcu------ ---------- ---------- ------)--- 1381 ---GC|---A GCCCA--AGA C|ACCUU-GC --|------- (-cca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuuu--C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGC( ---------- ----GAAA)G CUUGA-CUU| 1561 A|-GUUA-U- GG-CAA---- ---------- ---------- (--------- ---cuca--- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -AAC-CCA-- 1981 AGUUA-ACUG UA-------a uaCGGC|GUA AAGAGUGGua --cacg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----cacua -uc-guaaca acuggc--gu -----|UAAA GUGCAG-UCA ----AGCC(G 2341 UCAUA)AGC| CUA------C AAUG-CACCU AAA------- -----cuucc -ccu(-uaag 2401 -)ac|g---- ----acccca gcaaccac-- gacc------ uaucaaccCC ACGAA-AGCU 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCU 2521 U--GGUA-CC |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(ccac)u g---A-AGUG 2701 C-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- UCCCAA--CC C-CCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUG C-ACCUAACC CCUCCUCGCC ---------- ---------- 2881 (---u---ag ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU CAC-|CUU(C --CCU)GAG- -----(agc- 3181 aca)-----A C-AGUGAGCU UAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -ccaagccc- 3781 ---------G CUAGUA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-G-GG-GGA -A-AGA--AA -UGGGCUACA UU--UCCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ag ca---)---- ---------- ---------- UAG-GAaacu 4021 ca-------- ------ACGA --AAGGG-GG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) A-GC-C--CC -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- caaua-uc-- --)GCCCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -accc-GGCC 4261 CUGGGA-CA- CGUACAUA-C -CGCCC~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.F.atra 5213 bp RNA RNA 02-JUL-1996 DEFINITION Mitochondrion Fulica atra.; ribosomal RNA. ACCESSION U59668 KEYWORDS ribosomal RNA. SOURCE Mitochondrion Fulica atra. ORGANISM Mitochondrion Fulica atra. REFERENCE 1 (bases 1 to 973) AUTHORS Mindell,D.P., Knight,A., Baer,C. and Huddleston,C.J. TITLE rate and body temperature hypotheses Slow rates of molecular evolution in birds and the metabolic JOURNAL Mol. Biol. Evol. 13, 422-426 (1996) STANDARD No information REFERENCE 2 (bases 1 to 973) AUTHORS Mindell,D.P., Knight,A., Baer,C. and Huddleston,C.J. TITLE Direct Submission JOURNAL Submitted (31-MAY-1996) Dept. of Biology and Museum of Zoology, University of Michigan, 1109 Geddes Ave., Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U59668 BASE COUNT 313 a 281 c 187 g 191 t 4241 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---acAGACU 661 (UAG-)U-CC U|AACCU-UA CAG-UUAAUU -C-UUGC-CA |AA-CA--UA -UAC-A-UGC 721 --AGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACUCCAGU GAUAAa--UG C|CCU-uacc -ccc-ug--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-cucacu gagg-)---- 1261 ---------- ---------- --ca--ggg- aa-gAGGAGC |--------- aGGCAUCA-- 1321 -GGCACAC-- -----(caac ---------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AAA C|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUGAGU( ---------- ----GAAA)A CUCNA-CUU| 1561 A|-GUUA-U- GG-CAA---- ---------- ---------- (--------- cccuaca--- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -AGC-CUA-- 1981 AAUUA-ACCG U-------ca ccCGGC|GUA AAGAGUGGU- -aa------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----cuuac -uauuaucua acuagg--au -----|CAAA GUACAA-CUA ----AGCU(G 2341 UCAUA)AGC| CCA------U GAUG-UACCU AAA------- -----accac -ccu(-aaau 2401 -)gc|g---- ----auccua gcacuaa-c- gauca----- acuaaacaCC ACUAA-AGCC 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-GGC- CCUAAA-UCU 2521 A--GAUA-CU |UC|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------u ucc(ccac)u a---A-AGUA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CUCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA U-ACCCAACC CCUCCUUGCC ---------- ---------- 2881 (---c---aa ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC CC-CA|G-CU CAC-|cug(c --cc-)ugau -----(agu- 3181 cuc)----aA U-AGUGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----accuc- 3781 ---------G CUAGUA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 G-A-GG-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAaauc 4021 ca-------- ------ACGA --AAAGG-GG C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) A-CC-C--CC -U--AGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-GGGAGA(- uaaga-au-- --)GCCCCCU U-AAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUC--GGCC 4261 CUGGAG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -acagcc--- 4381 cccaa-cacc uguaacuaac acgcccaccg -----ggcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------AA GACG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)-GU-GC- ACUUAGCACA A--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.chlor 5213 bp RNA RNA 21-OCT-1997 DEFINITION Mitochondrion Gallinula chloropus.; . ACCESSION U76017 KEYWORDS . SOURCE Mitochondrion Gallinula chloropus. ORGANISM Mitochondrion Gallinula chloropus. REFERENCE 1 (bases 1 to 865) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G.A. TITLE Phylogeny and evolution of 12S rDNA in Gruiformes (Aves) JOURNAL Academic Press (1997) In press (in) Mindell,D.P. (Ed.); AVIAN MOL EVOL SYST: Academic Pres; STANDARD No information REFERENCE 2 (bases 1 to 865) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G. A. TITLE Direct Submission JOURNAL Submitted (24-OCT-1996) Biology, New Mexico State University, Box 30001 / Dept. 3AF, Las Cruces, NM 88003, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U76017 BASE COUNT 285 a 246 c 160 g 170 t 4352 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --nnnNGACU 661 (UAG-)U-CC U|AACCU-UA CAG-UUAAUU -C-UUGC-CA |AA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GUAAA---UG C|CCU-Cac- -ccc-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--acuca aaaac)---- 1261 ---------- ---------- --ag--gga- --aGAGGAGC |--------- aGGCAUCA-- 1321 -GGCACAC-- -----(caau ---------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AAA C|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUGAGU( ---------- ----GUAA)A CUCGA-CUU| 1561 A|-GUUA-U- GG-CAA---- ---------- ---------- (--------- -ccacua--- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -AGC-CCA-- 1981 AAUUA-ACCG U-------cg ccCGGC|GUA AAGAGUGGu- -a-acu---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----uacua -uc--accua acuaag--gu -----|CGAA AUACAA-CUA ----AGCU(G 2341 UCAUA)AGC| CCA------U GAUG-UACUU AAG------- -----accac -ccu(--aaa 2401 -)aa|c---- ----gacccu agcaguaac- gacua----- auuaaauaCC ACGAA-AGCC 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-GGC- CCUAAA-UCU 2521 A--AAUA-CU |UU|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- ucc(ccac)c a---A-AGUA 2701 U-U|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CUCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA U-ACCCAACC CCUUCUUGCC ---------- ---------- 2881 (---u---ua ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC CC-CA|G-CU CAC-|CUG(C --CCU)GAU- -----(aga- 3181 cu-)----ua auAGUGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----auccc- 3781 ---------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 A-A-CG-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAaacc 4021 ---------- ------CAAC --GAAAA-GG G-G(------ ---------- ---------- 4081 ---------- --------cc UGAAA--c-) A-CC-C--CC -U--AGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-GGAGGA(- caaga-au-- --)GCCCCCU U-AAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCC 4261 CUGGAG-CA- CGUACACA-U -CGCCC~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.L.melan 5213 bp RNA RNA 21-OCT-1997 DEFINITION Mitochondrion Laterallus melanophaius.; . ACCESSION U76018 KEYWORDS . SOURCE Mitochondrion Laterallus melanophaius. ORGANISM Mitochondrion Laterallus melanophaius. REFERENCE 1 (bases 1 to 867) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G.A. TITLE Phylogeny and evolution of 12S rDNA in Gruiformes (Aves) JOURNAL (in) Mindell,D.P. (Ed.); AVIAN MOL EVOL SYST: Academic Pres; Academic Press (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 867) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G. A. TITLE Direct Submission JOURNAL Submitted (24-OCT-1996) Biology, New Mexico State University, Box 30001 / Dept. 3AF, Las Cruces, NM 88003, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U76018 BASE COUNT 293 a 246 c 165 g 163 t 4346 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aacAGACU 661 (UAG-)U-CC U|AACCU-UG CAG-UUAAUU -A-UCGU-CA |AG-UA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACGCCAGU GUAAA---UG C|CCA-Cac- -cuc-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---ccau caaac)---- 1261 ---------- ---------- --ag--gag- --aGAGGAGC |--------- aGGCAUCA-- 1321 -GGCACAC-- -----(uaca au-------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-CAUGAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GCUA-U- GA-CAA---- ---------- ---------- (----ccaac cacacca--- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCUACC-GC -GGU-CA)-U ACAAGA|--- -AGC-CCA-- 1981 AAUUA-ACUA C--------c gcCGGC|GUA AAGAGUGG-- -aacua---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----cacua -u-uacuc-a acuaag--ac -----|CGAA AUGCAG-CUA ----AGCU(G 2341 UCAUA)AGC| CCA------U GAUG-CACUU AAG------- -----accac -ccu(-caaa 2401 -)ac|g---- ----aucuua g-cgccau-- gacua----- acaaaacaCC ACGAA-AGCC 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-GGC- CCUAAA-UCC 2521 A--GAUA-CC |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(cuac)u a---A-AGUA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CUCCAAA-AC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA U-ACCCAACC CCUUCUAGCC ---------- ---------- 2881 (---c---aa ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC CC-CA|G-CU CAC-|CUC(- --ccu)GAG- -----(agc- 3181 cuc)----ua c-AGUGAGCA CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----augcc- 3781 ---------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 A-A-GG-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa au---)---- ---------- ---------- AGA-AAaccc 4021 ---------- ------ACGA --AAAGA-GA U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAA--A-) A-GU-C--UC -U--AGAAG- -GAGGAUUUA 4141 G-A--AGUAA A-GAGGGG(- caaga-ac-- --)ACCCUCU U-AAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUU--GGCC 4261 AUGGAG-CA- CGUACAUA-C -CGCCC~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.R.longi 5213 bp RNA RNA 21-OCT-1997 DEFINITION Mitochondrion Rallus longirostris.; . ACCESSION U76016 KEYWORDS . SOURCE Mitochondrion Rallus longirostris. ORGANISM Mitochondrion Rallus longirostris. REFERENCE 1 (bases 1 to 864) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G.A. TITLE Phylogeny and evolution of 12S rDNA in Gruiformes (Aves) JOURNAL (in) Mindell,D.P. (Ed.); AVIAN MOL EVOL SYST: Academic Pres; Academic Press (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 864) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G. A. TITLE Direct Submission JOURNAL Submitted (24-OCT-1996) Biology, New Mexico State University, Box 30001 / Dept. 3AF, Las Cruces, NM 88003, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U76016 BASE COUNT 275 a 233 c 163 g 178 t 4364 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aacAGACU 661 (UAG-)U-CC U|AACUU-UA CAG-UUAAUU -U-UUGC-CA |AA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GUAAA---UG C|CCU-gag- --uu-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uuugu caua-)---- 1261 ---------- ---------- --gg--aag- ---cAGGAGC |--------- AGGUAUCA-- 1321 -GGCNNNN-- -----(nnnn nnnnnn---- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GUUA-U- GG-CAA---- ---------- ---------- (--------- ucuauua--- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCUACC-GC -GGU-CA)-U ACAAGA|--- -AGC-CCA-- 1981 AACUA-ACUG C--------u acCGGC|GUA AAGAGUGGca --cua----- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------cau -uaucgcuca acuaaa--ac -----|CGAA AYGUAA-CUa ----AGCC(G 2341 UCAUA)AGC| CUA------U GUUA-CUUUU AAG------- -----aucac -ccu(-caaa 2401 -)ac|g---- ----auuuua guacccau-- gacca----- accgagcaCC ACGAA-AGCU 2461 A-GGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCU 2521 A--GAUG-UU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(cuac)c a---A-AACA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CUCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCUAACC CCCCCUCGCC ---------- ---------- 2881 (---c---aa ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC CC-CA|G-CU CAC-|CUU(C --UCU)GAG- -----(agc- 3181 uca)-----A C-AGUGAGCA CAA-CAAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----auccc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-A-GG-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ag---)---- ---------- ---------- UAG-AAaaca 4021 ---------- ------ACGA --AAAGA-GG C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) A-GC-C--UC -U--AGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-GAGGAG(- caaga-au-- --)ACCCUCU U--aa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -acuu-GGCC 4261 CUGGAG-CA- CGUACAUA-C -CGCCC~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.R.jubat 5213 bp RNA RNA 21-OCT-1997 DEFINITION Mitochondrion Rhynochetus jubata.; . ACCESSION U76026 KEYWORDS . SOURCE Mitochondrion Rhynochetus jubata. ORGANISM Mitochondrion Rhynochetus jubata. REFERENCE 1 (bases 1 to 388) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G.A. TITLE Phylogeny and evolution of 12S rDNA in Gruiformes (Aves) JOURNAL Academic Press (1997) In press (in) Mindell,D.P. (Ed.); AVIAN MOL EVOL SYST: Academic Pres; STANDARD No information REFERENCE 2 (bases 1 to 388) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G. A. TITLE Direct Submission JOURNAL Submitted (24-OCT-1996) Biology, New Mexico State University, Box 30001 / Dept. 3AF, Las Cruces, NM 88003, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U76026 BASE COUNT 114 a 105 c 94 g 75 t 4825 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCCU-AGC- CCUAAA-UCU 2521 A--GACG-CU |AA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cu(cuac)u c---U-AGCG 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -AUAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA U-ACCCAACC CCCCCUAGCA ---------- ---------- 2881 (-------ag gu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CACc|CUC(A ---CU)GAG- -----(ggg- 3181 aua)-----a u-AGUGGACA AAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ucuuc- 3781 ---------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-G-GC-GG- -A-AGA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g cag--)---- ---------- ---------- UAG-AA-cau 4021 u--------- ------ACGG --AGCGG-GG U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) C-AC-U--CC -U--AAAAG- -GUGGAUUUA 4141 G-U--AGUAA G-AGGGGA(- uaaua-aa-- --)GCCCCUC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GAC--GGGU 4261 CUGGGG-c~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.T.hartl 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Tauraco hartlaubi.; . ACCESSION U83746 KEYWORDS . SOURCE Mitochondrion Tauraco hartlaubi. ORGANISM Mitochondrion Tauraco hartlaubi. REFERENCE 1 (bases 1 to 972) AUTHORS Knight,A., Sawchuk,S.J. and Yuri,T. Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., TITLE orders based on mitochondrial DNA Phylogenetic relationships among and within select avian JOURNAL SYSTEMATICS: 211-245; Academic Press (1997) (in) Mindell,D.F. (Ed.) ; AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 972) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83746 BASE COUNT 326 a 261 c 187 g 198 t 4241 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUAACU -A-UCGC-UA |GA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GUAAA---UG C|CCU-uaa- -cuu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----c-a uuc-g)---- 1261 ---------- ---------- --ag--auu- aa-aAGGAGC |--------- aGGUAUCA-- 1321 -GGCACAC-- -----(caaa uc-------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|ACCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GAAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CAA---- ---------- ---------- (-uaccua-- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -AAC-CCA-- 1981 AGUUA-ACCA A--------a uaCGGC|GUA AAGAGUGGc- -aucau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-uua -ucacac-ag acuaag--au -----|CAAA AUACAA-CUA ----GGCU(G 2341 UAAUA)AGC| UUA------A GAUG-UACCA AAG------- -----acccc -uuu(-aaaa 2401 -)ac|a---- ----aucuua gcccgcaugc -aagauca-- auuaaccuCC ACGAA-AGCC 2461 A-GGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CUUAAA-UCU 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(ccac)u a---A-AGUA 2701 U-C|--C|GC C-UGGG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACC CUAAGGAC-U 2761 UG|GGGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGGUA C-ACCUAACC CUUCCUUGAC ---------- ---------- 2881 (-------aa aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGu CUA-uA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC UAC-|CUC(- --aau)GAG- -----(agc- 3181 cca)-----A C-AGUGGGCA CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ccccc- 3781 ---------G CUAAAA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-A-AG-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ac---)---- ---------- ---------- UAG-AAaacu 4021 u-c------- ------ACGG --AAAGG-GG U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) C-AC-U--CC -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-ACAGGA(- caauguga-- --)GCCUGCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GUC--GGCC 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< auaagcu--- 4381 acagu-cuau uaua-uaccu aaaacuaaca cc----agcc a--------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GACG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGCACA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.O.hoazi 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Opisthocomus hoazin.; . ACCESSION U83748 KEYWORDS . SOURCE Mitochondrion Opisthocomus hoazin. ORGANISM Mitochondrion Opisthocomus hoazin. REFERENCE 1 (bases 1 to 968) AUTHORS Knight,A., Sawchuk,S.J. and Yuri,T. Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., TITLE orders based on mitochondrial DNA Phylogenetic relationships among and within select avian JOURNAL SYSTEMATICS: 211-245; Academic Press (1997) (in) Mindell,D.F. (Ed.) ; AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 968) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83748 BASE COUNT 307 a 265 c 196 g 199 t 4246 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CAG-UUAAUU -C-UUGC-CA |AA-UA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACACCAGU GUAAA---UG C|CCUcagcu ccca-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----aa ccga-)---- 1261 ---------- ---------- --ag--uac- u--gAGGGGC |--------- aGGUAUCA-- 1321 -GGCACAC-- -----(caca cu-------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AAA C|GCCUU-GC --|------- (-ucc--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GCAA)A CUUGA-CUU| 1561 A|-GUUA-U- GG-CAA---- ---------- ---------- (-uacaca-- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -AGC-CCA-- 1981 AAUUA-ACCG U--------a ugCGGC|GUA AAGAGUGAc- -auuau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-uua -ucgcagcag acuaag--au -----|AAAA AUACAA-CUG ----AGCU(G 2341 UCAUA)AGC| AAA------A GAUG-UACCU AAA------- -----cccac -cuu(-uaaa 2401 -)au|g---- ----aucuua guaccucc-- gauua----- auuauacuUC ACGAA-AGCU 2461 A-GGG---ca CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCU 2521 U--GGUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cu(acac)u a---G-AGUA 2701 UNC|--C|GC C-CGGG-AAC UACGAGC(-- -ACAAAC)GC UUG--AAACC CUAAGGAC-U 2761 UG|GCGGUG- CCUCAAA-CC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCGACC GCCCCUUGCC ---------- ---------- 2881 (-------ag aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC AC-CA|G-UC CAC-|CU-(u --uuu)GAA- -----(ggc- 3181 aca)-----A C-AGUGGGCA GGA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -cucacucc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC CAC------- ---------G 3841 G-G-GU-GG- -A-AGA--GA -UGGGCUACA CU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aa---)---- ---------- ---------- UAG-AGc-u- 4021 ---------- ------ACGG --AAAGG-AG U-G(------ ---------- ---------- 4081 ---------- ---------- ugaaa--u-) C-AC-A--CC -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCAGGA(- caaua-aa-- --)GCCCCCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACU--GGCC 4261 CUGAGG-CA- CGUACAUU-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< auaagcu--- 4381 auccu-ucuu aguacauaa- aucacuag-c a-----agcu a--------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GACG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- GCUUAGCACA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.phoen 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Cardinalis phoeniceus.; . ACCESSION U86141 KEYWORDS . SOURCE Mitochondrion Cardinalis phoeniceus. ORGANISM Mitochondrion Cardinalis phoeniceus. REFERENCE 1 (bases 1 to 973) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.P. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 973) AUTHORS Yuri,T., Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A. and Sawchuk,S.J. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U86141 BASE COUNT 296 a 272 c 206 g 199 t 4240 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CUG-UUAGUU -U-UUGC-UA |GG-UA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCUCCAGU GUAGA---UG C|CCU-ggac --ac-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------u aacu-)---- 1261 ---------- ---------- --ag--gua- g-auAGGAGC |--------- gGGUAUCA-- 1321 -GGCUCAC-- -----(caca ccc------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AAA C|GCCUU-GC --|------- (-aauu-)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-GU UAAUAUUAAG C-AAUGAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GCCA-U- AG-CAA---- ---------- ---------- (-aucua--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C CUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAGGA|--- -GAC-CCA-- 1981 AAUUA-ACUU U----a-uaa --CGGC|GUA AAGAGUGGu- -cacau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-cua -ucc-aagua acuaag--au -----|UAAA AAGCAA-CUG ----AGCU(G 2341 UCACA)AGC| CCA------A GAUG-CCAAU AAG------- -----gccgc -cua(--uca 2401 -)aa|g---- aag-aucuua gaacaac--- gauua----- auugaacuCC ACGAA-AGCC 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 U--GAUG-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- cac(cuac)u a---A-AGCA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACCAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUGAUCC 2821 A--------- ----)CGAUA U-ACCUGACC AUUCCUUGCC ---------- ---------- 2881 (---a---a- aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(C --UCU)GAA- -----(agc- 3181 cca)-----A C-AGUGAGCG CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -cccaccac- 3781 ---------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-A-AU-GG- -U-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g au---)---- ---------- ---------- UAG-AAcauc 4021 ---------- ------ACGG C-AAAGG-GG U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) A-AC-C--CC -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GUGGGA(- caauc-ga-- --)GCCCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaggcg--c 4381 ccccc-cccc ccauaacuaa uaagcuaccc -----agcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------AA GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGACUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.J.hyema 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Junco hyemalis.; . ACCESSION U86139 KEYWORDS . SOURCE Mitochondrion Junco hyemalis. ORGANISM Mitochondrion Junco hyemalis. REFERENCE 1 (bases 1 to 974) AUTHORS Knight,A., Sawchuk,S.J. and Yuri,T. Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., TITLE orders based on mitochondrial DNA Phylogenetic relationships among and within select avian JOURNAL SYSTEMATICS: 211-245; Academic Press (1997) In press (in) Mindell, D.P. (Ed.); AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 974) AUTHORS Yuri,T., Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A. and Sawchuk,S.J. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U86139 BASE COUNT 296 a 263 c 209 g 206 t 4239 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CUG-UUAGUU -U-UUGC-UA |GG-UA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCUCCGGU GUAGA---UG C|CCU-ggac --ac-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----cc aagu-)---- 1261 ---------- ---------- --gg--gua- g-auAGGAGC |--------- gGGCAUCA-- 1321 -GGCUCAC-- -----(caca acc------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GUCUC-GC --|------- (-aauu-)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UCau---C-A 1501 GCA|GUA-GU UAAUAUUAAG C-AAUGAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GCCA-U- AG-CAA---- ---------- ---------- (-aucua--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C CUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAGGA|--- -GAC-CCA-- 1981 AAUUA-ACUU U----a-uaa --CGGC|GUA AAGAGUGGu- -cacau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-uua -ucc-aagua gcuaag--au -----|UAAA AAGCAA-CUG ----AGCU(G 2341 UCGCA)AGC| CCA------A GAUG-CCAAU AAG------- -----gccuc -cac(-auca 2401 -)aa|g---- aag-aucuua gaacaac--- gauca----- auugaacuCC ACGAA-AGCC 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- cac(cuac)u a---A-AGUA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACUAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- UCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUGAUCC 2821 A--------- ----)CGAUA U-ACCUGACC AUUCCUUGCC ---------- ---------- 2881 (---a---a- aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUC(C --CCU)GAA- -----(ggc- 3181 cca)-----A C-AGUGAGCG CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -cccaccac- 3781 ---------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-A-AU-GG- -U-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g au---)---- ---------- ---------- UAG-AAcac- 4021 ---------- ------ACGG C-AAAGA-GG U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) A-AC-C--UC -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GUGGGA(- caauc-ga-- --)GCCCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCU 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< auaggcg--- 4381 ccccc-u-cc uuca-uaaau uaauaagcua ucc--agcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------AA GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGGCUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.magna 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Sturnella magna.; . ACCESSION U86140 KEYWORDS . SOURCE Mitochondrion Sturnella magna. ORGANISM Mitochondrion Sturnella magna. REFERENCE 1 (bases 1 to 974) AUTHORS Knight,A., Sawchuk,S.J. and Yuri,T. Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., TITLE orders based on mitochondrial DNA Phylogenetic relationships among and within select avian JOURNAL SYSTEMATICS: 211-245; Academic Press (1997) In press (in) Mindell, D.P. (Ed.); AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 974) AUTHORS Yuri,T., Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A. and Sawchuk,S.J. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U86140 BASE COUNT 301 a 261 c 205 g 207 t 4239 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CUG-UUAGUU -U-UUGC-UA |GG-UA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUUCCGGU GUAGA---UG C|CCU-ggac --ac-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------u aauc-)---- 1261 ---------- ---------- --ag--gua- g-auAGGAGC |--------- gGGUAUCA-- 1321 -GGCUCAC-- -----(caua acc------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AAA C|GCCUU-GC --|------- (-aauu-)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UCau---C-A 1501 GCA|GUA-GU UAAUAUUAAG C-AAUGAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GCCA-U- AG-CAA---- ---------- ---------- (-aucua--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C CUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAGGA|--- -GAC-CCA-- 1981 AAUUA-ACUU U----a-uaa --CGGC|GUA AAGAGUGGu- -cgcau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-uua -ucc-aagua acuaaa--au -----|UAAA AAGCAA-CUA ----AGCU(G 2341 UCGCA)AGC| CCA------A GAUG-CCAAU AAG------- -----accuc -cac(-auca 2401 -)aa|g---- aag-auuuua gaacaac--- gauua----- auugaacuCC ACGAA-AGCC 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 U--GAUG-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- cac(cuac)u a---A-AGCA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACUAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUGAUCC 2821 A--------- ----)CGUUA U-ACCUGACC AUUCCUUGCC ---------- ---------- 2881 (---a---a- aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(C --CCU)GAA- -----(agu- 3181 uca)-----A C-AGUGAGCG CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -ccaaccac- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-A-AU-GG- -U-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g ca---)---- ---------- ---------- UAG-AAcaca 4021 ---------- ------ACGG C-AAAGG-GG U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) A-AC-C--CC -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GUGGGA(- caauc-ga-- --)GCCCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCU 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gcaggcg--- 4381 -cccc-cucc ccaa-uaaau uaauacguua ucc--agcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------AA GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GAA-CC(GGA 4621 -A)GGU-GC- ACUUAGGCUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.L.collu 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Lanius collurio.; . ACCESSION U86142 KEYWORDS . SOURCE Mitochondrion Lanius collurio. ORGANISM Mitochondrion Lanius collurio. REFERENCE 1 (bases 1 to 974) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.P. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 974) AUTHORS Yuri,T., Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A. and Sawchuk,S.J. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U86142 BASE COUNT 299 a 258 c 208 g 209 t 4239 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CUG-UUGGUU -U-UUGC-UA |GA-CU--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCUCCAGU GUAAA---UG C|CCU-Aggc accc-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------u aacc-)---- 1261 ---------- ---------- --aa--guc- g-auAGGAGC |--------- gGGCAUCA-- 1321 -GGCACAC-- -----(acca auu------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-acuu-)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG UUcu---C-A 1501 GCA|GUA-GU UAACAUUAAG C-AAUGAGU( ---------- ----GUAA)A CUCGA-CUU| 1561 A|-GUCA-U- AG-CAA---- ---------- ---------- (-cuuaa--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC|-GGU 1921 -AAA-U---C CUGU-G(-CC AGCCACC-GC -GGU-UA)-U ACAGGA|--- -GAC-CCA-- 1981 AAUCA-ACUU U----a-uaa --CGGC|GUA AAGGGUGGU- -aacau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-uua -uc-aaagua acuaag--au -----|CAAA AAGCAA-CUG ----AGCC(G 2341 UAACA)AGC| CCA------A GAUG-CCCAU AAG------- -----accaa -cug(-ccga 2401 -)aa|g---- ag--aucuua gacuaac--- gauua----- auugaaauCC ACGAA-AGCC 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UAU 2521 U--GAUG-CU |UC|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- auc(cuac)c u---A-AGCA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GGGGUG- CUCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUGAUCC 2821 A--------- ----)CGAUU U-ACCUGACC AUUUCUUGCA ---------- ---------- 2881 (---a---a- au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CCU(C --UCU)GAA- -----(ggc- 3181 cua)-----A C-AGUGAGCG CAA-UAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --cuaaccc- 3781 ---------A CUAGCA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-A-AU-GG- -G-AGC--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g ac---)---- ---------- ---------- UAG-AAcauu 4021 ---------- ------ACGG C-AAAGA-GG U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) G-GC-C--UC -U--CGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GUGGGA(- uaauc-aa-- --)GCCCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCU 4261 CUGGAG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcg--- 4381 accaa-ccu- uuaa-uacau uaauacgcua ucg--agcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------AA GAGG-AGG-C AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGACCA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.ciner 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Motacilla cinerea.; . ACCESSION U86138 KEYWORDS . SOURCE Mitochondrion Motacilla cinerea. ORGANISM Mitochondrion Motacilla cinerea. REFERENCE 1 (bases 1 to 973) AUTHORS Knight,A., Sawchuk,S.J. and Yuri,T. Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., TITLE orders based on mitochondrial DNA Phylogenetic relationships among and within select avian JOURNAL SYSTEMATICS: 211-245; Academic Press (1997) In press (in) Mindell, D.P. (Ed.); AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 973) AUTHORS Yuri,T., Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A. and Sawchuk,S.J. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U86138 BASE COUNT 303 a 259 c 208 g 200 t 4243 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CUG-UUAGAG -G-GNGC-UA |GG-UA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCGCCAGU GUAGA---CG C|CCU-ggac --ac-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----u-a acc-a)---- 1261 ---------- ---------- --ag---ua- g-auAGGAGC |--------- aGGCAUCA-- 1321 -GGCucAC-- -----(caca ccc------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GUCUU-GC --|------- (-aauu-)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG UCau---C-A 1501 GCA|GUA-AU UAAUAUUAAG C-AAUGAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GCCA-U- AG-CAA---- ---------- ---------- (--auua--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C CUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAGGA|--- -GAC-CCA-- 1981 AAUUA-ACAU U----a-uaa --CGGC|GUA AAGAGUGGu- -cacau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-cua -ucc-aagua acuaag--au -----|UAAA AAACAA-CUG ----AGCU(G 2341 UCGCA)AGC| CCA------A GAUG-UCAAU AAG------- -----gccac -cuu(-auua 2401 -)aa|g---- aag-aucuua gaacaac--- gauua----- auugaacuCC ACGAA-AGCC 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GUCU-GGC- CCUAAA-UCU 2521 U--GAUG-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- ccc(cuac)u a---A-AGCA 2701 U-C|--C|UC C-CGAG-AAC UACGAGC(-- -ACCAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-G |CUGUA--AU CG(AUGAUCC 2821 A--------- ----)CGAUA U-ACCUGACC AUUCCUUGCC ---------- ---------- 2881 (---a---a- aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUC(C --CCU)GAA- -----(ggc- 3181 cua)-----A C-AGUGAGCG CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -cuaaccac- 3781 ---------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-G-AU-GG- -A-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a au---)---- ---------- ---------- UAG-AAcaa- 4021 ---------- ------ACGG C-AAAGA-GA C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) U-GU-C--UC -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GUGGGA(- caauc-ga-- --)GCCCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< auaggcg--- 4381 ccccc-uccc acuauaaauu aaua-agcua ugc--agcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------AA GAUG-AGG-U AAGUCGUAAC AAGGUAAG-N GUA-CC(GGA 4621 -A)GGU-GC- ACUUNGACUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.phoeb 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Sayornis phoebe.; . ACCESSION U83765 KEYWORDS . SOURCE Mitochondrion Sayornis phoebe. ORGANISM Mitochondrion Sayornis phoebe. REFERENCE 1 (bases 1 to 974) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 974) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83765 BASE COUNT 310 a 284 c 173 g 207 t 4239 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUAGUU -U-UUGC-UG |UA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GAAAA---UG C|CCU-caa- -cgu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----u-- auc-a)---- 1261 ---------- ---------- --ag--aca- a--uAGGaGC |--------- aGGUAUCA-- 1321 -GGCUCAC-- -----(ccca acu------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AAA C|GCCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GCAA)A CUUGA-CUU| 1561 A|-GUUA-A- AG-CAA---- ---------- ---------- (-cccccua- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -AAC-CCA-- 1981 AAUUA-ACCU U--------a caCGGC|GUA AAGAGUGG-- -cuccu---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----cauua -uc-aaccua acuaag--au -----|UGAA AUGCAA-CUA ----AGCC(G 2341 UUAUA)AGC| ACA------G GAUG-CACCU AAC------- -----accca -cua(-ucaa 2401 a)au|g---- ----aucuua gccau---cc ga-cua---- auaagaauCC ACGAA-AGCC 2461 A-GGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-CGC- CCUAAA-UCU 2521 U--GAUG-UC |UU|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------c uuc(ccac)c c---A-AACA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CUCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUACUCC 2821 A--------- ----)CGAUA C-ACCCAACC AUCUCUUGCC ---------- ---------- 2881 (-------aa ac-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CCC(c a-uuuuGAG- -----(ggc- 3181 cca)-----A C-AGUGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ccucc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCU CAU------- ---------G 3841 A-G-AU-GG- -A-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ca---)---- ---------- ---------- UAG-AAa-ac 4021 ccac------ ------ACGA --CAAGG-AA U-G(------ ---------- ---------- 4081 ---------- ---------- ugaaa--u-) C-AU-U--CC -U--AAAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCAGGA(- caauu-au-- --)GCCUCCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 CUGGAG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcu--a 4381 ccauc-accc ucca-uaccu aaaccuuacc cac----gcu a--------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-C AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGUCUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.F.magni 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Fregata magnificens. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Fregata magnificens. ORGANISM Mitochondrion Fregata magnificens. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L33372 ID MIFMZMF unannotated; circular DNA; ORG; 369 BP. XX AC L33372; XX DT 25-NOV-1994 (Rel. 41, Created) DT 25-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE Fregata magnificens mitochondrial 12S ribosomal RNA (12S rRNA) DE gene, 3' end. XX KW 12S ribosomal RNA; 12S rRNA. XX OS Fregata magnificens OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; OC Neornithes; Neognathae; Ciconiiformes; Procellarioidea; Fregatidae. XX OG Mitochondrion XX RN [1] RP 1-369 RA Hedges S.B., Sibley C.G.; RT "Molecules vs. morphology in avian evolution: The case of the RT 'pelecaniform' birds"; RL Proc. Natl. Acad. Sci. U.S.A. 91:9861-9865(1994). XX CC NCBI gi: 559025 XX FH Key Location/Qualifiers FH FT source 1..369 FT /organism="Fregata magnificens" FT /mitochondrion FT /sequenced_mol="DNA" FT rRNA 1..369 FT /partial FT /gene="12S rRNA" FT /note="putative" FT /product="12S ribosomal RNA" XX SQ Sequence 369 BP; 116 A; 108 C; 76 G; 69 T; 0 other; BASE COUNT 116 a 108 c 76 g 69 t 4844 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~C- CCUAAA-UCU 2521 U--GAUG-CC |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(cuac)c u---A-AGCA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- UCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCAACC ACCCCUCGCC ---------- ---------- 2881 (-------ag ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUC(G --CCU)GAG- -----(gga- 3181 ccu)-----A C-AGUGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- cacaauccc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-G-AU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ga---)---- ---------- ---------- UAG-ACuaga 4021 uca------- ------ACGG --AAAGA-GG U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) C-AC-C--UU -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GUGAGA(- uaauu-aa-- --)GCCCCC~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.occid 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Pelecanus occidentalis. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Pelecanus occidentalis. ORGANISM Mitochondrion Pelecanus occidentalis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L33382 LOCUS PCAMTZG 367 bp DNA circular VRT 11-MAY-1995 DEFINITION Pelecanus occidentalis mitochondrial 12S ribosomal RNA (12S rRNA) gene, 3' end. ACCESSION L33382 KEYWORDS 12S rRNA. SOURCE Mitochondrion Pelecanus occidentalis DNA. ORGANISM Mitochondrion Pelecanus occidentalis Eukaryota; Animalia; Chordata; Vertebrata; Aves; Ciconiiformes; Pelecanoidea; Pelecanidae; Pelecaninae. REFERENCE 1 (bases 1 to 367) AUTHORS Hedges,S.B. and Sibley,C.G. TITLE Molecules vs. morphology in avian evolution: the case of the 'pelecaniform' birds JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91 (21), 9861-9865 (1994) MEDLINE 95024061 COMMENT NCBI gi: 559225 FEATURES Location/Qualifiers source 1..367 /organism="Mitochondrion Pelecanus occidentalis" /mitochondrion /sequenced_mol="DNA" rRNA <1..367 /gene="12S rRNA" /note="putative" /product="12S ribosomal RNA" BASE COUNT 114 a 110 c 78 g 65 t ORIGIN BASE COUNT 114 a 110 c 78 g 65 t 4846 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~C- CCUAAA-UCU 2521 U--GAUA-Cc |UG|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(ccac)u a---A-AGUA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CUCCAAA-CC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUG C-ACCCAACC ACUCCUUGCC ---------- ---------- 2881 (-------aa ug-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(C --CCU)GAG- -----(aga- 3181 gcc)-----a u-aGUGAGCA UAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --cuaccac- 3781 ---------G CUAGCA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 A-A-GU-GG- -A-AGA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a au---)---- ---------- ---------- UAG-AAaacc 4021 cc-------- ------ACGA --AAGAG-GG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) U-GC-C--CC -Cc-GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GAGGGA(- caaua-ga-- --)GCCCCC~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.aethe 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Phaethon aethereus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Phaethon aethereus. ORGANISM Mitochondrion Phaethon aethereus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L33384 LOCUS PE0MTZG 366 bp DNA circular VRT 11-MAY-1995 DEFINITION Phaethon aethereus mitochondrial 12S ribosomal RNA (12S rRNA) gene, 3' end. ACCESSION L33384 KEYWORDS 12S rRNA; 12S ribosomal RNA. SOURCE Mitochondrion Phaethon aethereus DNA. ORGANISM Mitochondrion Phaethon aethereus Eukaryota; Animalia; Chordata; Vertebrata; Aves; Ciconiiformes; Ciconii; Phaethontidae. REFERENCE 1 (bases 1 to 366) AUTHORS Hedges,S.B. and Sibley,C.G. TITLE Molecules vs. morphology in avian evolution: the case of the 'pelecaniform' birds JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91 (21), 9861-9865 (1994) MEDLINE 95024061 COMMENT NCBI gi: 559229 FEATURES Location/Qualifiers source 1..366 /organism="Mitochondrion Phaethon aethereus" /mitochondrion /sequenced_mol="DNA" rRNA <1..366 /gene="12S rRNA" /note="putative" /product="12S ribosomal RNA" BASE COUNT 116 a 115 c 74 g 61 t ORIGIN BASE COUNT 116 a 115 c 74 g 61 t 4847 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~C- CAUAAA-UCU 2521 C--GAUG-CU |UC|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(ccac)c a---A-AGCA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 CG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUA C-AGCUCACC AUCUCUUGCC ---------- ---------- 2881 (--aa---ac ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-UU CAC-|CUC(A --UCA)GAG- -----(ucc- 3181 a--)-----A C-AGUGAACA CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -ccaacccc- 3781 ---------G CUAAUA-AGG C-AGGUCAAG G|UAUA|GCC CAC------- ---------G 3841 A-G-AU-GG- -C-AGA--AA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AGuacc 4021 -c-------- ------ACGA --AAGGG-GG C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) C-AC-C--CC -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCGGAA(- caau--cga- --)GUCCCC~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.brasi 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Phalacrocorax brasilianus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Phalacrocorax brasilianus. ORGANISM Mitochondrion Phalacrocorax brasilianus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L33386 LOCUS PXOMTZG 365 bp DNA circular VRT 11-MAY-1995 DEFINITION Phalacrocorax brasilianus mitochondrial 12S ribosomal RNA (12S rRNA) gene, 3' end. ACCESSION L33386 KEYWORDS 12S rRNA; 12S ribosomal RNA. SOURCE Mitochondrion Phalacrocorax brasilianus DNA. ORGANISM Mitochondrion Phalacrocorax brasilianus Eukaryota; Animalia; Chordata; Vertebrata; Aves; Ciconiiformes; Ciconii; Phalacrocoracoidea; Phalacrocoracidae. REFERENCE 1 (bases 1 to 365) AUTHORS Hedges,S.B. and Sibley,C.G. TITLE Molecules vs. morphology in avian evolution: the case of the 'pelecaniform' birds JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91 (21), 9861-9865 (1994) MEDLINE 95024061 COMMENT NCBI gi: 559239 FEATURES Location/Qualifiers source 1..365 /organism="Mitochondrion Phalacrocorax brasilianus" /mitochondrion /sequenced_mol="DNA" rRNA <1..365 /gene="12S rRNA" /note="putative" /product="12S ribosomal RNA" BASE COUNT 115 a 106 c 78 g 65 t 1 others ORIGIN BASE COUNT 115 a 106 c 78 g 65 t 4849 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~C- CCUAAA-UCU 2521 U--GGCA-CU |UC|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cn(cuac)u a---A-AGUG 2701 C-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUU C-ACCCGACC GCCCCUUGCC ---------- ---------- 2881 (-------aa aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CUU(C --GUG)AA-- -----(aga- 3181 aca)-----a u-AGUGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --cucgccc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCU CAU------- ---------G 3841 G-G-GC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- CAG-AAaacu 4021 ua-------- ------ACGA --AAGGG-AA C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) C-GU-U--UC -C--AAAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- caaua-ga-- --)GCCUCC~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.pelag 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Phalacrocorax pelagicus.; . ACCESSION U83711 KEYWORDS . SOURCE Mitochondrion Phalacrocorax pelagicus. ORGANISM Mitochondrion Phalacrocorax pelagicus. REFERENCE 1 (bases 1 to 974) AUTHORS Knight,A., Sawchuk,S.J. and Yuri,T. Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., TITLE orders based on mitochondrial DNA Phylogenetic relationships among and within select avian JOURNAL SYSTEMATICS: 211-245; Academic Press (1997) (in) Mindell,D.F. (Ed.) ; AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 974) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83711 BASE COUNT 299 a 292 c 198 g 185 t 4239 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCC-UG CCG-UUAAUU -C-UUGC-UA |GA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GUAAA---UG C|CCC-Ca-g --cc-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---ugau ccuau)---- 1261 ---------- ---------- --ag--gua- a-g-GGGAGC |--------- aGGUAUCA-- 1321 -GGCACGC-- -----(cccc ucaaa----- ---------- ---------- ------)--- 1381 ---GC|---A GCCCA--AGA C|ACCUU-GC --|------- (-cca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UGACAUUAAG C-AAUGAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GCCA-U- AG-CAA---- ---------- ---------- (uauccca-- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGC 1921 -AAA-U---C UUGU-G(-CC AGCCGCC-GC -GGU-CA)-C ACAAGA|--- -GGC-CCA-- 1981 AAUUA-ACAG A----a-auu --CGGC|GUA AAGAGUGGu- -uauau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-uua -uc-uccaua acuagg--gc -----|CAAA ACACAG-CUA ----AGCU(G 2341 UCAUA)AGC| UUA------A GCUG-CACCU AAG------- -----ccccc -ccu(-caaa 2401 -)ac|g---- ----acccua gcacgcac-- gauuc----- auuaagccCC ACCAA-AGCU 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCU 2521 U--GGCA-CU |UC|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(cuac)u a---A-AGUG 2701 C-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUU C-ACCCGACC GUCCCUUGCC ---------- ---------- 2881 (---a---a- aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CU-(U --CGU)GAA- -----(aga- 3181 aua)-----A U-AGUGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --ccuaccc- 3781 ---------G CUAGUA-AGA C-AGGUCAAG G|UAUA|GCU CAU------- ---------G 3841 A-G-AC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- CAG-AAaauu 4021 aa-------- ------ACGA --AAGAG-GA C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) C-GU-C--CC -C--GAAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- caaua-ga-- --)GCCCCCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACU--GGCC 4261 CUGAGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcc--- 4381 -acaa-acuc cauauaacua auacccuccc c----ggcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------AA GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGCUCA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.St.punc 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Stictocarbo punctatus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Stictocarbo punctatus. ORGANISM Mitochondrion Stictocarbo punctatus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X82532 ID MSP12SRNA standard; DNA; ORG; 371 BP. XX AC X82532; XX DT 09-NOV-1994 (Rel. 41, Created) DT 09-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE S.punctatus mitochondrion 12S rRNA gene XX KW 12S rRNA gene; mitochondrial ribosomal rna. XX OS Stictocarbo punctatus OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; OC Neornithes; Neognathae; Pelecaniformes; Phalacrocoracidae; OC Stictocarbo. XX OG Mitochondrion XX RN [1] RP 1-371 RA Wallis G.P.; RT ; RL Submitted (04-NOV-1994) to the EMBL/GenBank/DDBJ databases. RL G.P. Wallis, University of Otago, Dept of Zoology, PO Box 56, RL Dunedin, NEW ZEALAND XX RN [2] RP 1-371 RA Paterson A.M., Gray R.D., Wallis G.P.; RT "Petrels, penguins and parsimony: Does cladistic analysis of RT behaviour reflect seabird phylogeny?"; RL Evolution 0:0-0(0). XX FH Key Location/Qualifiers FH FT source 1..371 FT /organism="Stictocarbo punctatus" FT /isolate="birds 1 & 3" FT /map="nucleotide number 1770" FT /mitochondrion FT rRNA 1..371 FT /product="12S mitochondrial ribosomal RNA" XX SQ Sequence 371 BP; 115 A; 108 C; 82 G; 64 T; 2 other; BASE COUNT 115 a 108 c 82 g 64 t 4844 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--NNCA-CU |UC|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(cuac)u a---A-AGUG 2701 C-C|--C|GC C-cGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUU C-ACCCGACC GCCCCUUGCC ---------- ---------- 2881 (-------aa aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CUU(C g-ugA)AAG- -----(aac- 3181 a--)-----a c-AGUGAGCG CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --cucgccc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCU CAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- CAG-AAaacu 4021 ua-------- ------ACGA --AAGAG-GA C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) C-GU-C--CU -C---AAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- caaua-ga-- --)GCCCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACA--GGCC 4261 CUGAGG-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.nebou 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Sula nebouxii. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Sula nebouxii. ORGANISM Mitochondrion Sula nebouxii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L33394 LOCUS ULAMTZG 368 bp DNA circular VRT 11-MAY-1995 DEFINITION Sula nebouxii mitochondrial 12S ribosomal RNA (12S rRNA) gene, 3' end. ACCESSION L33394 KEYWORDS 12S rRNA; 12S ribosomal RNA. SOURCE Mitochondrion Sula nebouxii DNA. ORGANISM Mitochondrion Sula nebouxii Eukaryota; Animalia; Chordata; Vertebrata; Aves; Ciconiiformes; Ciconii; Suloidea; Sulidae. REFERENCE 1 (bases 1 to 368) AUTHORS Hedges,S.B. and Sibley,C.G. TITLE Molecules vs. morphology in avian evolution: the case of the 'pelecaniform' birds JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91 (21), 9861-9865 (1994) MEDLINE 95024061 COMMENT NCBI gi: 559256 FEATURES Location/Qualifiers source 1..368 /organism="Mitochondrion Sula nebouxii" /mitochondrion /sequenced_mol="DNA" rRNA <1..368 /gene="12S rRNA" /note="putative" /product="12S ribosomal RNA" BASE COUNT 115 a 106 c 75 g 72 t ORIGIN BASE COUNT 115 a 106 c 75 g 72 t 4845 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~C- CCUAAA-UCU 2521 U--GGCA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -ca(cuac)u a---A-AGUG 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- UCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCAACC ACCCCUUGCC ---------- ---------- 2881 (-------aa ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CUC(C --CUU)GAA- -----(aga- 3181 aua)-----A C-AGUGGACA CAA-UAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --cccuucuc 3781 cc-------A CUAACA-AGA C-AGGUCAAG G|UAUA|GCU UAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a gu---)---- ---------- ---------- UAG-AAgacu 4021 a--------- ------ACGG --AAAGG-GG C-A(------ ---------- ---------- 4081 ---------- ---------- UGCAA--C-) U-CC-C--CC -U--AGAAG- -GCGGAUUUA 4141 G-U--AGUAA A-GCGGGA(- ccaua-aa-- --)GCCCUC~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.ruber 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Phoenicopterus ruber.; . ACCESSION U83714 KEYWORDS . SOURCE Mitochondrion Phoenicopterus ruber. ORGANISM Mitochondrion Phoenicopterus ruber. REFERENCE 1 (bases 1 to 970) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 970) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83714 BASE COUNT 311 a 272 c 195 g 192 t 4243 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUAAUU -C-UUGC-UA |AA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGUCCCAGU GUAAA---UG C|CCU-Ugau --cu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----u-- gcua-)---- 1261 ---------- ---------- --ag--aug- a--aAGGAGC |--------- gGGCAUCA-- 1321 -GGCACAC-- -----(ccac uguc------ ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AAA C|GCCUU-GC --|------- (-auu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GUUA-U- GG-CAA---- ---------- ---------- (-uacua--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACAG U------aua --CGGC|GUA AAGAGUGGu- -aucau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-uua -ucguaac-a acuaag--au -----|GAAA GUGCAA-CUG ----AGCU(G 2341 UCAUA)AGC| CCA------A GGUG-CUCCU AAG------- -----gccgc -ccu(-caag 2401 -)ac|g---- ----aucuua gcacacac-- gacca----- auuaaaccCC ACGAA-AGCU 2461 A-GGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCU 2521 C--GAUG-CU |UG|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -gc(ccac)c a---A-AGCA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUG C-ACCCAACC AUUCCUUGCC ---------- ---------- 2881 (---a---a- aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUC(C --CCU)GAG- -----(agc- 3181 aca)-----A C-AGUGAACA UAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -ccuaaccc- 3781 ---------G CUAGCA-AGA C-AGGUCAAG G|UAUA|GCU CAC------- ---------G 3841 G-A-AU-GG- -A-AGA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAaacu 4021 ua-------- ------ACGA --AAAGG-AG U-G(------ ---------- ---------- 4081 ---------- ---------- ugaaa--c-) C-AC-U--CC -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- uaaua-aa-- --)GCCCCCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- gUUG--GCCC 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcu--- 4381 accaa-acac ccau-aacua auacacccac c----agcug ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGCACA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.carol 5213 bp RNA RNA 02-JAN-1999 DEFINITION Mitochondrion Melanerpes carolinus.; . ACCESSION U89209 KEYWORDS . SOURCE Mitochondrion Melanerpes carolinus. ORGANISM Mitochondrion Melanerpes carolinus. REFERENCE 1 (bases 1 to 917) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 917) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (11-FEB-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89209 BASE COUNT 292 a 265 c 173 g 187 t 4296 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UG UUA-UUAAUU -U-UUGC-CG |AA-UC--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCAUCCCAGU GUAAA---UG C|CCC-uag- --cc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---cuac a----)---- 1261 ---------- ---------- --ag--gaca a--gaggaGC |--------- aGGCAUCA-- 1321 -GGCACAC-- -----(ccuc u--------- ---------- ---------- ------)--- 1381 ---GU|---a GCCCA--AAA C|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GAAA)A CUUGA-CUU| 1561 A|-GUCA-C- GG-CAA---- ---------- ---------- (-caua---- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -AAC-CCA-- 1981 AAUUA-AUAA C--------g caCGGC|GUA AAGAGUGA-- -uuaaac--- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----au-cu aucguuccug ucugag--gc -----|CAAA ACAUGC-CUG ----AGCC(G 2341 UCACA)AGC| CCA------A GACA-UACUU AAg------- ---------c -cca(-uaaa 2401 -)uu|c---- ----accuca acuucaac-g auc------a acc-gaacUC ACGAA-AGCC 2461 A-GGG---GA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CGUUAA-UUC 2521 A--AAUG-CU |U-|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -uc(uuac)c u---A-AGCA 2701 U-U|--C|GC C-AGGG-AAU UACGAGC(-- -ACAAAC)GC UUA--AAACC CUAAGGAC-U 2761 UG|GCGGUG- UCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGCUA C-ACCCAACC UCCCCUUGCA ---------- ---------- 2881 (--auaaa-- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CUC(C --ACU)GAG- -----(agu- 3181 cca)-----A C-AGUGAGCA UAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---uucaccc 3781 ---------G CUAAAA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 G-G-GG-GGa -A-AGA--AA -UGGGCUACA UU--UUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ca---)---- ---------- ---------- CAG-ACaaua 4021 ---------- ------ACGA --AAGAG-GA C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAuc--) C-AU-C--CU -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA G-ACAUAA(- ccacc-au-- --)GCUUGCC U-uaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACU--GGCC 4261 CUAGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gcaagcaac- 4381 accuc-uccu caccauagaa c----ugcaa ---uuagcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.variu 5213 bp RNA RNA 02-JAN-1999 DEFINITION Mitochondrion Sphyrapicus varius.; . ACCESSION U89208 KEYWORDS . SOURCE Mitochondrion Sphyrapicus varius. ORGANISM Mitochondrion Sphyrapicus varius. REFERENCE 1 (bases 1 to 924) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 924) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (11-FEB-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89208 BASE COUNT 287 a 281 c 175 g 181 t 4289 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CUA-UUAAUU -C-UUGC-CA |GA-CC--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCGCCCCAGU GUAAA---UG C|CCC-Caa- --cu-ccc-- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---cauc a----)---- 1261 ---------- ---------- --gg--aua- a--gAGGAGC |--------- aGGUAUCA-- 1321 -GGCACAC-- -----(accu acc------- ---------- ---------- ------)--- 1381 ---GU|---a GCCCA--AGA C|ACCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG CAcu---C-A 1501 GCA|UUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GAAA)A CUUGA-CUU| 1561 A|-GUCA-U- GG-CAA---- ---------- ---------- (-cacca--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -UAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -AAC-CCA-- 1981 AAUUA-AUAG U--------g caCGGC|GUA AAGAGUGA-- -uccua---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----cacuu aucgc-cucc gccuga--gg c----|CAAA ACGUGU-CCA ----AGAU(G 2341 UCACA)AGC| CCA------A GACA-UGCCU AAG------- ------cccc -ucc(-caac 2401 -)cc|g---- ----ccucaa cuucagcg-a u--------c aac-uaauUC ACGAA-AGCC 2461 A-GGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CGUAAA-UUC 2521 A--AAUG-CU |UU|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- uua(uuac)c u---A-AGCA 2701 U-U|--C|GC C-AGGG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACC CUAAGGAC-U 2761 UG|GCGGUG- UCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGCUA C-ACCCAACC CCCCCUAGCC ---------- ---------- 2881 (--augaaa- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU CAC-|CUC(C --AUU)GAA- -----(agc- 3181 cca)-----A C-AGUGAGCA CAA-CAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cucaccc 3781 ---------G CUAAAA-AGA C-AGGUCAAG G|UAUA|GCC AAU------- ---------G 3841 G-G-GG-GGa -A-AGA--AA -UGGGCUACA UU--UUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ca---)---- ---------- ---------- CAG-ACaac- 4021 ---------- ------AGCG -aAAGAG-GG C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAcc--) U-GC-C--CU -C--AGAAG- -ACGGAUUUA 4141 U-C--AGUAA A-ACAUGA(- cuauc-au-- --)GCCUGUC U-uaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 CUGGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< guaagcgaa- 4381 cauuc-ccuu ucucauaaaa c----accaa ---ccagucu ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.prasi 5213 bp RNA RNA 02-JAN-1999 DEFINITION Mitochondrion Aulacorhynchus prasinus.; . ACCESSION U89207 KEYWORDS . SOURCE Mitochondrion Aulacorhynchus prasinus. ORGANISM Mitochondrion Aulacorhynchus prasinus. REFERENCE 1 (bases 1 to 915) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 915) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (11-FEB-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89207 BASE COUNT 278 a 293 c 182 g 162 t 4298 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUGGUU -C-CUAC-UA |AA-CC--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCGACCCGGU GUGAA---UG C|CCU-Uaga --cu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---uacc a----)---- 1261 ---------- ---------- --ag--aca- a--gAGGAGC |--------- cGGCAUCA-- 1321 -GGCGCGC-- -----(ccc- ---------- ---------- ---------- ------)--- 1381 ---GC|---a GCCCA--CGA C|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG CCuu---C-A 1501 GCA|GUG-AC UAACAUUAAG C-CAUAAGU( ---------- ----GCAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-UAA---- ---------- ---------- (-acca---- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -AAC-CCA-- 1981 AAUCA-ACUG U--------a caCGGC|GUA AAGAGUGG-- -uccaaac-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----acuau ccuca-uuaa -cuagg--ac -----|UAAA UUGCAA-UCG ----AGCU(G 2341 UCAUA)AGC| CUA------C GAUG-CACCC AAA------- ------ccc- ccau(-uaac 2401 -)au|a---- ----gaccua gca-ccaa-g gacc-----g acc-aaccCC ACGAA-AGCC 2461 G-GGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-UGC- CCUAAA-UCC 2521 U--GGUG-CC |C-|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- uua(cuac)c a---G-AGCA 2701 C-C|--C|GC C-CGGG-GAC UACGAGC(-- -ACAAAC)GC UUA--AAACC CUAAGGAC-U 2761 UG|GCGGUG- UCCCAAA-CC CCCCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAACCC 2821 A--------- ----)CGCUA C-ACCCCACC CCUCCUUGCC ---------- ---------- 2881 (---caag-- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(A --CAU)GAU- -----(agu- 3181 aca)-----A C-AGUGGACA CAA-CAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---uuccuc- 3781 ---------G UUAACA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-G-GG-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a cc---)---- ---------- ---------- UAG-ACcaca 4021 c--------- ------ACGA --AAAAG-AG C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) G-GC-C--CU -U--AGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-ACACGA(- caauc-aa-- --)GCCUGUU U-uaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 CUGGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagccac- 4381 aagcg-cccc uaacuaaccc -----aaaaa ---ucagcug ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GACG-AGG-C ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.aurit 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Podiceps auritus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Podiceps auritus. ORGANISM Mitochondrion Podiceps auritus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L33388 LOCUS PDIMTZG 367 bp DNA circular VRT 11-MAY-1995 DEFINITION Podiceps auritus mitochondrial 12S ribosomal RNA (12S rRNA) gene, 3' end. ACCESSION L33388 KEYWORDS 12S rRNA; 12S ribosomal RNA. SOURCE Mitochondrion Podiceps auritus DNA. ORGANISM Mitochondrion Podiceps auritus Eukaryota; Animalia; Chordata; Vertebrata; Aves; Ciconiiformes; Ciconii; Ciconiides; Podicipedidae. REFERENCE 1 (bases 1 to 367) AUTHORS Hedges,S.B. and Sibley,C.G. TITLE Molecules vs. morphology in avian evolution: the case of the 'pelecaniform' birds JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91 (21), 9861-9865 (1994) MEDLINE 95024061 COMMENT NCBI gi: 559227 FEATURES Location/Qualifiers source 1..367 /organism="Mitochondrion Podiceps auritus" /mitochondrion /sequenced_mol="DNA" rRNA <1..367 /gene="12S rRNA" /note="putative" /product="12S ribosomal RNA" BASE COUNT 128 a 101 c 74 g 64 t ORIGIN BASE COUNT 128 a 101 c 74 g 64 t 4846 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~C- CCUAAA-UCU 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cu(auac)u a---A-AGUA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUA C-ACCCAACC GCCCCUUGCC ---------- ---------- 2881 (-------aa aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUC(C --ACU)GAG- -----(agu- 3181 aca)-----A C-AGUGAGCA CAA-UAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --cuuaaccc 3781 ---------A CUAGCA-AGA C-AGGACAAG G|UAUA|GCA CAU------- ---------G 3841 G-G-GC-GG- -A-AGA--GA -UGGGCUACA UU--UACUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAgaac 4021 a--------- ------ACGG --AAAGG-GA U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--A-) CaAU-C--CC -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCGGAA(- caaua-ca-- --)GACCCC~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.epomo 5213 bp RNA RNA 11-JAN-191 DEFINITION Diomedea epomophora. ACCESSION No information KEYWORDS No information. SOURCE Diomedea epomophora. ORGANISM Diomedea epomophora. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X82530 ID MDE12SRNA standard; DNA; ORG; 373 BP. XX AC X82530; XX DT 09-NOV-1994 (Rel. 41, Created) DT 09-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE D.epomophora mitochondrion 12S rRNA gene XX KW 12S rRNA gene; mitochondrial ribosomal rna. XX OS Diomedea epomophora OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; OC Neornithes; Neognathae; Procellariiformes; Diomedeidae; Diomedea. XX OG Mitochondrion XX RN [1] RP 1-373 RA Wallis G.P.; RT ; RL Submitted (04-NOV-1994) to the EMBL/GenBank/DDBJ databases. RL G.P. Wallis, University of Otago, Dept of Zoology, PO Box 56, RL Dunedin, NEW ZEALAND XX RN [2] RP 1-373 RA Paterson A.M., Gray R.D., Wallis G.P.; RT "Petrels, penguins and parsimony: Does cladistic analysis of RT behaviour reflect seabird phylogeny?"; RL Evolution 0:0-0(0). XX FH Key Location/Qualifiers FH FT source 1..373 FT /organism="Diomedea epomophora" FT /isolate="birds 3 & 4" FT /map="nucleotide number 1770" FT /mitochondrion FT rRNA 1..373 FT /product="12S mitochondrial ribosomal RNA" XX SQ Sequence 373 BP; 111 A; 106 C; 84 G; 72 T; 0 other; BASE COUNT 111 a 106 c 84 g 72 t 4840 others ORIGIN 1 |---.----- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--AAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cu(cuac)u a---A-AGUA 2701 U-U|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCAACC GCCCCUUGCC ---------- ---------- 2881 (-------aa gg-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-UC CAC-|CUC(C --CCU)GAG- -----(agu- 3181 cca)-----A C-AGUGGACA UAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ccccc- 3781 ---------G CUAGCA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 G-A-GC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g ag---)---- ---------- ---------- UAG-AAaacu 4021 uuu------- ------ACGG --AAAGG-GA U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) C-GU-C--CC -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- uaaua---ua c-)GCCCCCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACC--GGCC 4261 CUGGGG-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.nigri 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Diomedea nigripes.; . ACCESSION U83710 KEYWORDS . SOURCE Mitochondrion Diomedea nigripes. ORGANISM Mitochondrion Diomedea nigripes. REFERENCE 1 (bases 1 to 973) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 973) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83710 BASE COUNT 314 a 270 c 191 g 198 t 4240 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUAAUU -C-UUGC-UA |AA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GUAAA---UG C|CCU-Ugau --uu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------u acca-)---- 1261 ---------- ---------- --ag--acg- a-g-AGGAGC |--------- aGGCAUCA-- 1321 -GGCACAC-- -----(caca uuaaac---- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-cca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---CAA 1501 GCA|GUA-AU UAACCUUAAG C-AAUAAGC( ---------- ----GAAA)G CUUGA-CUU| 1561 A|-GUUA-U- AG-CAA---- ---------- ---------- (caccua--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACCG U----a-aua --CGGG|GUA AAGAGUGGu- -accau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-cua -ucauaac-a acuaag--au -----|UAAA AUGCAG-CUA ----GGCU(G 2341 UCAUA)AGC| AUA------A GAUG-CUCUU AAA------- -----cccac -ccu(-uaag 2401 -)ac|g---- ----aucuua gcacccc--- gauca----- auuaaaccCC ACGAA-AGCU 2461 A-GGG---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCU 2521 U--AAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cu(ccac)u a---A-AGUA 2701 U-U|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GGGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCAACC GCUCCUUGCC ---------- ---------- 2881 (---a---gg -a-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-UC CAC-|CUC(C --CCU)GAG- -----(agc- 3181 cca)-----A U-AGUGGACA UAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --caacccc- 3781 ---------G CUAGCA-AGA C-AGGUCAAG G|UUUA|GCC CAU------- ---------G 3841 G-A-GC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ag---)---- ---------- ---------- UAG-AAaacu 4021 uc-------- ------ACGG --AAAGG-GA U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) C-GU-C--CC -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCGAGA(- caaua-uac- --)GCCCCCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACC--GGCC 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcu--- 4381 acaaa-cauc uaauaacuaa u-auacuuac u----agcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------AA GACG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGCAUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.bulle 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Thalassarche bulleri. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Thalassarche bulleri. ORGANISM Mitochondrion Thalassarche bulleri. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X82516 ID MDB12SRNA standard; DNA; ORG; 372 BP. XX AC X82516; XX DT 09-NOV-1994 (Rel. 41, Created) DT 09-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE D.bulleri mitochondrion 12S rRNA gene XX KW 12S rRNA gene; mitochondrial ribosomal rna. XX OS Diomedea bulleri OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; OC Neornithes; Neognathae; Procellariiformes; Diomedeidae; Diomedea. XX OG Mitochondrion XX RN [1] RP 1-372 RA Wallis G.P.; RT ; RL Submitted (04-NOV-1994) to the EMBL/GenBank/DDBJ databases. RL G.P. Wallis, University of Otago, Dept of Zoology, PO Box 56, RL Dunedin, NEW ZEALAND XX RN [2] RP 1-372 RA Paterson A.M., Gray R.D., Wallis G.P.; RT "Petrels, penguins and parsimony: Does cladistic analysis of RT behaviour reflect seabird phylogeny?"; RL Evolution 0:0-0(0). XX FH Key Location/Qualifiers FH FT source 1..372 FT /organism="Diomedea bulleri" FT /isolate="birds 1 & 2" FT /map="nucleotide number 1770" FT /mitochondrion FT rRNA 1..372 FT /product="12S mitochondrial ribosomal RNA" XX SQ Sequence 372 BP; 117 A; 111 C; 76 G; 66 T; 2 other; BASE COUNT 117 a 111 c 76 g 66 t 4843 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--AAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(ccac)c a---A-AGUA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- UCCCAAA-UC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCAACC GUUCCUUGCC ---------- ---------- 2881 (-------aa aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(C --CCU)GAG- -----(agc- 3181 uca)-----A C-AGUGGACA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --cuacccc- 3781 ---------G CUAGCA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 G-A-GC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAaacu 4021 cu-------- ------ACGG --A-AGG-GG U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-AC-C--CC -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- uaaua---ua c-)GCCCCCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACC--GGCC 4261 CUGGNN-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.georg 5213 bp RNA RNA 22-AUG-1996 DEFINITION Mitochondrion Pelecanoides georgicus.; 12S rRNA gene; mitochondrial ribosomal rna. ACCESSION X82531 KEYWORDS 12S rRNA gene; mitochondrial ribosomal rna. SOURCE Mitochondrion Pelecanoides georgicus. ORGANISM Mitochondrion Pelecanoides georgicus. REFERENCE 1 (bases 1 to 378) AUTHORS Wallis,G.P. TITLE Direct Submission JOURNAL Dept of Zoology, PO Box 56, Dunedin, NEW ZEALAND Submitted (04-NOV-1994) G.P. Wallis, University of Otago, STANDARD No information REFERENCE 2 (bases 1 to 378) AUTHORS Paterson,A.M., Wallis,G.P. and Gray,R.D. TITLE Penguins, petrels and parsimony: Does cladistic analysis of behavior reflect seabird phylogeny? JOURNAL Evolution 49, 974-989 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X82531 BASE COUNT 122 a 97 c 80 g 79 t 4835 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(cuac)c g---A-AGUA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CUCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AC CG(AUAAUCC 2821 A--------- ----)CGAUA C-ACCCAACC GUUCUUUGCC ---------- ---------- 2881 (-------aa ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUU(A --UCU)GAA- -----(agu- 3181 acu)-----G C-AGUGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-c uucaacauc- 3781 ---------G CUAGUA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------A 3841 G-A-GC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAuaac 4021 acu------- ------ACGG --AAGAG-AG U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) U-AC-C--CU -C--GGAAG- -GUGGAUUUA 4141 G-C--AGUAA A-GUGGGA(- uaaua-acu- --)GCCCACU U-AAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCU--GGCC 4261 CUGGAG-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.urina 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Pelecanoides urinatrix. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Pelecanoides urinatrix. ORGANISM Mitochondrion Pelecanoides urinatrix. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X82518 ID MPU12SRNA standard; DNA; ORG; 379 BP. XX AC X82518; XX DT 09-NOV-1994 (Rel. 41, Created) DT 09-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE P.urinatrix mitochondrion 12S rRNA gene XX KW 12S rRNA gene; mitochondrial ribosomal rna. XX OS Pelecanoides urinatrix OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; OC Neornithes; Neognathae; Procellariiformes; Pelecanoididae; OC Pelecanoides. XX OG Mitochondrion XX RN [1] RP 1-379 RA Wallis G.P.; RT ; RL Submitted (04-NOV-1994) to the EMBL/GenBank/DDBJ databases. RL G.P. Wallis, University of Otago, Dept of Zoology, PO Box 56, RL Dunedin, NEW ZEALAND XX RN [2] RP 1-379 RA Paterson A.M., Gray R.D., Wallis G.P.; RT "Petrels, penguins and parsimony: Does cladistic analysis of RT behaviour reflect seabird phylogeny?"; RL Evolution 0:0-0(0). XX FH Key Location/Qualifiers FH FT source 1..379 FT /organism="Pelecanoides urinatrix" FT /isolate="birds 4 & 7" FT /map="nucleotide number 1770" FT /mitochondrion FT rRNA 1..379 FT /product="12S mitochondrial ribosomal RNA" XX SQ Sequence 379 BP; 123 A; 93 C; 80 G; 77 T; 6 other; BASE COUNT 123 a 93 c 80 g 77 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--NAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(cuac)u a---A-AGUA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- UUCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUA G-ACCCGACC GUUCUUUGCU ---------- ---------- 2881 (-------aa ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUU(A --UCU)GAA- -----(agu- 3181 aua)-----G C-AGUGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-c uucaacauc- 3781 ---------G CUAGUA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------A 3841 G-A-AC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAcaau 4021 acu------- ------ACGG --AAGAG-GG U-G(a----- ---------- ---------- 4081 ---------- ---------- UGAAA--C-) U-AC-C--CU -C--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCGAGA(- uaaua---aa w-)GCCCNCN N-NAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCU--GGCC 4261 CUGGAG-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Pel.mar 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Pelagodroma marina. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Pelagodroma marina. ORGANISM Mitochondrion Pelagodroma marina. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X82535 remID MPM12SRNA standard; DNA; ORG; 374 BP. remXX remAC X82535; remXX remDT 09-NOV-1994 (Rel. 41, Created) remDT 09-NOV-1994 (Rel. 41, Last updated, Version 1) remXX remDE P.marina mitochondrion 12S rRNA gene remXX remKW 12S rRNA gene; mitochondrial ribosomal rna. remXX remOS Pelagodroma marina remOC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; remOC Neornithes; Neognathae; Procellariiformes; Oceanitidae; remOC Pelagodroma. remXX remOG Mitochondrion remXX remRN [1] remRP 1-374 remRA Wallis G.P.; remRT ; remRL Submitted (04-NOV-1994) to the EMBL/GenBank/DDBJ databases. remRL G.P. Wallis, University of Otago, Dept of Zoology, PO Box 56, remRL Dunedin, NEW ZEALAND remXX remRN [2] remRP 1-374 remRA Paterson A.M., Gray R.D., Wallis G.P.; remRT "Petrels, penguins and parsimony: Does cladistic analysis of remRT behaviour reflect seabird phylogeny?"; remRL Evolution 0:0-0(0). remXX remFH Key Location/Qualifiers remFH remFT source 1..374 remFT /organism="Pelagodroma marina" remFT /isolate="birds 7 & 9" remFT /map="nucleotide number 1770" remFT /mitochondrion remFT rRNA 1..374 remFT /product="12S mitochondrial ribosomal RNA" remXX remSQ Sequence 374 BP; 113 A; 104 C; 82 G; 68 T; 7 other; BASE COUNT 113 a 104 c 82 g 68 t 4846 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 N--NNNN-NN |CC|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- --u(ccac)u a---G-AGUA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCAACC GCCCCUUGCC ---------- ---------- 2881 (-------aa gg-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUC(U --UCU)GAG- -----(agc- 3181 aca)-----A C-AGUGAGCA CAA-UAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --uuccccc- 3781 ---------A CUAGUA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 A-G-GC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ga---)---- ---------- ---------- UAG-AAaacu 4021 cc-------- ------ACGA --AAAGA-GG U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--gc) C-AC-C--CC -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCAGAA(- uaaua-aa-- --)GUCUGCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCU--GGCC 4261 CUGGGG-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.capen 5213 bp RNA RNA 11-JAN-191 DEFINITION Daption capense. ACCESSION No information KEYWORDS No information. SOURCE Daption capense. ORGANISM Daption capense. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X82517 D MDC12SRNA standard; DNA; ORG; 377 BP. XX AC X82517; XX DT 09-NOV-1994 (Rel. 41, Created) DT 09-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE D.capense mitochondrion 12S rRNA gene XX KW 12S rRNA gene; mitochondrial ribosomal rna. XX OS Daption capense OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; OC Neornithes; Neognathae; Procellariiformes; Procellariidae; Daption. XX OG Mitochondrion XX RN [1] RP 1-377 RA Wallis G.P.; RT ; RL Submitted (04-NOV-1994) to the EMBL/GenBank/DDBJ databases. RL G.P. Wallis, University of Otago, Dept of Zoology, PO Box 56, RL Dunedin, NEW ZEALAND XX RN [2] RP 1-377 RA Paterson A.M., Gray R.D., Wallis G.P.; RT "Petrels, penguins and parsimony: Does cladistic analysis of RT behaviour reflect seabird phylogeny?"; RL Evolution 0:0-0(0). XX FH Key Location/Qualifiers FH FT source 1..377 FT /organism="Daption capense" FT /isolate="birds 1 & 2" FT /map="nucleotide number 1770" FT /mitochondrion FT rRNA 1..377 FT /product="12S mitochondrial ribosomal RNA" XX SQ Sequence 377 BP; 119 A; 102 C; 80 G; 74 T; 2 other; BASE COUNT 119 a 102 c 80 g 74 t 4838 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--nAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -ca(ccac)u g---A-AGUA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AC CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCGACC GUUCUUUGCC ---------- ---------- 2881 (-------aa ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUU(U --UCU)GAA- -----(agc- 3181 aua)-----A C-AGUGAGCA UAA-UAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-c cucaacgcc- 3781 ---------A CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------A 3841 G-A-GC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAaacu 4021 c--------- ------ACGG --AAGGG-GA U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) U-AgcC--CC -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- uaau---gac u-)GCCCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCU--GGCU 4261 CUGNGG-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Macn.gi 5213 bp RNA RNA 11-JAN-191 DEFINITION Macronectes giganteus. ACCESSION No information KEYWORDS No information. SOURCE Macronectes giganteus. ORGANISM Macronectes giganteus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X82523 ID MMG12SRNA standard; DNA; ORG; 376 BP. XX AC X82523; XX DT 09-NOV-1994 (Rel. 41, Created) DT 09-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE M.giganteus mitochondrion 12S rRNA gene XX KW 12S rRNA gene; mitochondrial ribosomal rna. XX OS Macronectes giganteus OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; OC Neornithes; Neognathae; Procellariiformes; Procellariidae; OC Macronectes. XX OG Mitochondrion XX RN [1] RP 1-376 RA Wallis G.P.; RT ; RL Submitted (04-NOV-1994) to the EMBL/GenBank/DDBJ databases. RL G.P. Wallis, University of Otago, Dept of Zoology, PO Box 56, RL Dunedin, NEW ZEALAND XX RN [2] RP 1-376 RA Paterson A.M., Gray R.D., Wallis G.P.; RT "Petrels, penguins and parsimony: Does cladistic analysis of RT behaviour reflect seabird phylogeny?"; RL Evolution 0:0-0(0). XX FH Key Location/Qualifiers FH FT source 1..376 FT /organism="Macronectes giganteus" FT /map="nucleotide number 1770" FT /mitochondrion FT rRNA 1..376 FT /product="12S mitochondrial ribosomal RNA" XX SQ Sequence 376 BP; 118 A; 108 C; 80 G; 67 T; 3 other; BASE COUNT 118 a 108 c 80 g 67 t 4840 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(ccac)a g---A-AGUA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AC CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCGACC GCUCUUUGCC ---------- ---------- 2881 (-------aa ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUU(U --CUG)AG-- -----(agu- 3181 aca)-----a c-AGUGAGCA UAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-c cucaacacc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------A 3841 G-A-GC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAaacu 4021 c--------- ------ACGG --AAGGA-GG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) U-GC-C--CC -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- uaau--gaau c-)GCCCCCU U-UGA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GAC--UGCU 4261 CUGNNN-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.turtu 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Pachyptila turtur. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Pachyptila turtur. ORGANISM Mitochondrion Pachyptila turtur. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X82521 ID MPT12SRNA standard; DNA; ORG; 376 BP. XX AC X82521; XX DT 09-NOV-1994 (Rel. 41, Created) DT 09-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE P.turtur mitochondrion 12S rRNA gene XX KW 12S rRNA gene; mitochondrial ribosomal rna. XX OS Pachyptila turtur OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; OC Neornithes; Neognathae; Procellariiformes; Procellariidae; OC Pachyptila. XX OG Mitochondrion XX RN [1] RP 1-376 RA Wallis G.P.; RT ; RL Submitted (04-NOV-1994) to the EMBL/GenBank/DDBJ databases. RL G.P. Wallis, University of Otago, Dept of Zoology, PO Box 56, RL Dunedin, NEW ZEALAND XX RN [2] RP 1-376 RA Paterson A.M., Gray R.D., Wallis G.P.; RT "Petrels, penguins and parsimony: Does cladistic analysis of RT behaviour reflect seabird phylogeny?"; RL Evolution 0:0-0(0). XX FH Key Location/Qualifiers FH FT source 1..376 FT /organism="Pachyptila turtur" FT /isolate="birds B & g" FT /map="nucleotide number 1770" FT /mitochondrion FT rRNA 1..376 FT /product="12S mitochondrial ribosomal RNA" XX SQ Sequence 376 BP; 120 A; 105 C; 82 G; 69 T; 0 other; BASE COUNT 120 a 105 c 82 g 69 t 4837 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(cuac)u g---A-AGUA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCGACC ACUCCUUGCC ---------- ---------- 2881 (-------ga ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUU(U --CUG)AA-- -----(agc- 3181 aca)-----g C-AGUGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-a accaacauc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAaacc 4021 cc-------- ------ACGG --AAAGG-GG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) U-GC-C--CC -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- uaaua---aa u-)GCCCCCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GUU--GGCC 4261 CUGGAG-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.vitta 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Pachyptila vittata. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Pachyptila vittata. ORGANISM Mitochondrion Pachyptila vittata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X82515 ID MPV12SRNA standard; DNA; ORG; 377 BP. XX AC X82515; XX DT 09-NOV-1994 (Rel. 41, Created) DT 09-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE P.vittata mitochondrion 12S rRNA gene XX KW 12S rRNA gene; mitochondrial ribosomal rna. XX OS Pachyptila vittata OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; OC Neornithes; Neognathae; Procellariiformes; Procellariidae; OC Pachyptila. XX OG Mitochondrion XX RN [1] RP 1-377 RA Wallis G.P.; RT ; RL Submitted (04-NOV-1994) to the EMBL/GenBank/DDBJ databases. RL G.P. Wallis, University of Otago, Dept of Zoology, PO Box 56, RL Dunedin, NEW ZEALAND XX RN [2] RP 1-377 RA Paterson A.M., Gray R.D., Wallis G.P.; RT "Petrels, penguins and parsimony: Does cladistic analysis of RT behaviour reflect seabird phylogeny?"; RL Evolution 0:0-0(0). XX FH Key Location/Qualifiers FH FT source 1..377 FT /organism="Pachyptila vittata" FT /isolate="birds b & 3" FT /map="nucleotide number 1770" FT /mitochondrion FT rRNA 1..377 FT /product="12S mitochondrial ribosomal RNA" XX SQ Sequence 377 BP; 119 A; 105 C; 83 G; 70 T; 0 other; BASE COUNT 119 a 105 c 83 g 70 t 4836 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(cuac)u g---A-AGUA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCGACC ACUCCUUGCC ---------- ---------- 2881 (-------ga ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUU(U --CUG)AA-- -----(agc- 3181 aca)-----g c-AGUGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-a accaacauc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAaacc 4021 ccc------- ------ACGG --AAAGG-GG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) U-GC-C--CC -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- uaaua---aa u-)GCCCCCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GUU--GGCC 4261 CUGGAG-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.westl 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Procellaria westlandica. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Procellaria westlandica. ORGANISM Mitochondrion Procellaria westlandica. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X82534 ID MPW12SRNA standard; DNA; ORG; 377 BP. XX AC X82534; XX DT 09-NOV-1994 (Rel. 41, Created) DT 09-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE P.westlandica mitochondrion 12S rRNA gene XX KW 12S rRNA gene; mitochondrial ribosomal rna. XX OS Procellaria westlandica OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; OC Neornithes; Neognathae; Procellariiformes; Procellariidae; OC Procellaria. XX OG Mitochondrion XX RN [1] RP 1-377 RA Wallis G.P.; RT ; RL Submitted (04-NOV-1994) to the EMBL/GenBank/DDBJ databases. RL G.P. Wallis, University of Otago, Dept of Zoology, PO Box 56, RL Dunedin, NEW ZEALAND XX RN [2] RP 1-377 RA Paterson A.M., Gray R.D., Wallis G.P.; RT "Petrels, penguins and parsimony: Does cladistic analysis of RT behaviour reflect seabird phylogeny?"; RL Evolution 0:0-0(0). XX FH Key Location/Qualifiers FH FT source 1..377 FT /organism="Procellaria westlandica" FT /isolate="birds 5 & 7" FT /map="nucleotide number 1770" FT /mitochondrion FT rRNA 1..377 FT /product="12S mitochondrial ribosomal RNA" XX SQ Sequence 377 BP; 120 A; 100 C; 82 G; 75 T; 0 other; BASE COUNT 120 a 100 c 82 g 75 t 4836 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -gc(cuac)u a---A-AGUA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA A-ACCCAACC GCCUUUUGCU ---------- ---------- 2881 (-------ag ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUU(C --CCU)GAG- -----(agu- 3181 aca)-----G C-AGUGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-c cucaacauc- 3781 ---------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------A 3841 G-G-GC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAaacu 4021 uu-------- ------ACGA --AAAGG-GG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) U-GC-C--CC -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCGGAA(- uaaua---aa u-)GCCCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCU--GGCC 4261 CUGGGG-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.brevi 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Pterodroma brevirostris. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Pterodroma brevirostris. ORGANISM Mitochondrion Pterodroma brevirostris. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X82526 ID MPB12SRNA standard; DNA; ORG; 375 BP. XX AC X82526; XX DT 09-NOV-1994 (Rel. 41, Created) DT 09-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE P.brevirostris mitochondrion 12S rRNA gene XX KW 12S rRNA gene; mitochondrial ribosomal rna. XX OS Pterodroma brevirostris OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; OC Neornithes; Neognathae; Procellariiformes; Procellariidae; OC Pterodroma. XX OG Mitochondrion XX RN [1] RP 1-375 RA Wallis G.P.; RT ; RL Submitted (04-NOV-1994) to the EMBL/GenBank/DDBJ databases. RL G.P. Wallis, University of Otago, Dept of Zoology, PO Box 56, RL Dunedin, NEW ZEALAND XX RN [2] RP 1-375 RA Paterson A.M., Gray R.D., Wallis G.P.; RT "Petrels, penguins and parsimony: Does cladistic analysis of RT behaviour reflect seabird phylogeny?"; RL Evolution 0:0-0(0). XX FH Key Location/Qualifiers FH FT source 1..375 FT /organism="Pterodroma brevirostris" FT /isolate="bird 1084" FT /map="nucleotide number 1770" FT /mitochondrion FT rRNA 1..375 FT /product="12S mitochondrial ribosomal RNA" XX SQ Sequence 375 BP; 119 A; 101 C; 79 G; 76 T; 0 other; BASE COUNT 119 a 101 c 79 g 76 t 4838 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(cuac)u a---A-AGUA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CUCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCAACC ACUCCUUGCC ---------- ---------- 2881 (-------aa ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUU(U --CUU)GAA- -----(agu- 3181 aca)-----A C-AGUGAGCA UAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-c cccaacauc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g aa---)---- ---------- ---------- UAG-AAaccu 4021 ---------- ------ACGG --AAAGG-GG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) U-UC-C--CC -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-ACGGGA(- caau---gaa u-)GCCCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GUU--GGCC 4261 CUGGAG-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.cooki 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Pterodroma cooki. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Pterodroma cooki. ORGANISM Mitochondrion Pterodroma cooki. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X82519 ID MPC12SRNA standard; DNA; ORG; 375 BP. XX AC X82519; XX DT 09-NOV-1994 (Rel. 41, Created) DT 09-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE P.cooki mitochondrion 12S rRNA gene XX KW 12S rRNA gene; mitochondrial ribosomal rna. XX OS Pterodroma cooki OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; OC Neornithes; Neognathae; Procellariiformes; Procellariidae; OC Pterodroma. XX OG Mitochondrion XX RN [1] RP 1-375 RA Wallis G.P.; RT ; RL Submitted (04-NOV-1994) to the EMBL/GenBank/DDBJ databases. RL G.P. Wallis, University of Otago, Dept of Zoology, PO Box 56, RL Dunedin, NEW ZEALAND XX RN [2] RP 1-375 RA Paterson A.M., Gray R.D., Wallis G.P.; RT "Petrels, penguins and parsimony: Does cladistic analysis of RT behaviour reflect seabird phylogeny?"; RL Evolution 0:0-0(0). XX FH Key Location/Qualifiers FH FT source 1..375 FT /organism="Pterodroma cooki" FT /isolate="birds a & b" FT /map="nucleotide number 1770" FT /mitochondrion FT rRNA 1..375 FT /product="12S mitochondrial ribosomal RNA" XX SQ Sequence 375 BP; 115 A; 103 C; 84 G; 73 T; 0 other; BASE COUNT 115 a 103 c 84 g 73 t 4838 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(ccac)u g---A-AGUA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUG C-ACCCAACC ACUCUUUGCC ---------- ---------- 2881 (-------ag ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUC(C --UCU)GAG- -----(agu- 3181 aca)-----A C-AGUGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -cccaacac- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------A 3841 G-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ag---)---- ---------- ---------- UAG-AAaacu 4021 uu-------- ------ACGG --AAGGG-GG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) U-AC-C--CC -C--GGAAG- -GUGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- uuaua---ag u-)GCCCCCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GUU--GGCC 4261 CUAGGG-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.inexp 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Pterodroma inexpectata. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Pterodroma inexpectata. ORGANISM Mitochondrion Pterodroma inexpectata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: S82528 ID MPI12SRNA standard; DNA; ORG; 373 BP. XX AC X82528; XX DT 09-NOV-1994 (Rel. 41, Created) DT 09-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE P.inexpectata mitochondrion 12S rRNA gene XX KW 12S rRNA gene; mitochondrial ribosomal rna. XX OS Pterodroma inexpectata OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; OC Neornithes; Neognathae; Procellariiformes; Procellariidae; OC Pterodroma. XX OG Mitochondrion XX RN [1] RP 1-373 RA Wallis G.P.; RT ; RL Submitted (04-NOV-1994) to the EMBL/GenBank/DDBJ databases. RL G.P. Wallis, University of Otago, Dept of Zoology, PO Box 56, RL Dunedin, NEW ZEALAND XX RN [2] RP 1-373 RA Paterson A.M., Gray R.D., Wallis G.P.; RT "Petrels, penguins and parsimony: Does cladistic analysis of RT behaviour reflect seabird phylogeny?"; RL Evolution 0:0-0(0). XX FH Key Location/Qualifiers FH FT source 1..373 FT /organism="Pterodroma inexpectata" FT /isolate="birds g & j" FT /map="nucleotide number 1770" FT /mitochondrion FT rRNA 1..373 FT /product="12S mitochondrial ribosomal RNA" XX SQ Sequence 373 BP; 111 A; 101 C; 85 G; 75 T; 1 other; BASE COUNT 111 a 101 c 85 g 75 t 4841 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(ccac)c g---A-AGUA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCAACC ACUCUUUGCC ---------- ---------- 2881 (-------aa ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUC(C --UCU)GAG- -----(agu- 3181 aca)-----A C-AGUGAGCA UAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- cccgacauc- 3781 ---------G CUAGUA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------A 3841 G-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a gg---)---- ---------- ---------- UAG-AAacu- 4021 ---------- ------ACGG --AAGGG-GG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) U-UC-C--CC -C--GGAAG- -GUGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- uuaua---ag u-)GCCCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GUU--GGCC 4261 CUGNGG-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.gravi 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Puffinus gravis. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Puffinus gravis. ORGANISM Mitochondrion Puffinus gravis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L33390 LOCUS PUFMTZG 369 bp DNA circular VRT 11-MAY-1995 DEFINITION Puffinus gravis mitochondrial 12S ribosomal RNA (12S rRNA) gene, 3' end. ACCESSION L33390 KEYWORDS 12S rRNA; 12S ribosomal RNA. SOURCE Mitochondrion Puffinus gravis DNA. ORGANISM Mitochondrion Puffinus gravis Eukaryota; Animalia; Chordata; Vertebrata; Aves; Ciconiiformes; Ciconii; Procellariidae; Procellariinae. REFERENCE 1 (bases 1 to 369) AUTHORS Hedges,S.B. and Sibley,C.G. TITLE Molecules vs. morphology in avian evolution: the case of the 'pelecaniform' birds JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91 (21), 9861-9865 (1994) MEDLINE 95024061 COMMENT NCBI gi: 559233 FEATURES Location/Qualifiers source 1..369 /organism="Mitochondrion Puffinus gravis" /mitochondrion /sequenced_mol="DNA" rRNA <1..369 /gene="12S rRNA" /note="putative" /product="12S ribosomal RNA" BASE COUNT 123 a 100 c 74 g 69 t 3 others ORIGIN BASE COUNT 123 a 100 c 74 g 69 t 4847 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~C- CCUAAA-UCU 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(cuac)c g---A-AGUA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CUCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA A-ACCCAACC GCUCUUUGCC ---------- ---------- 2881 (-------aa ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUU(C --CCU)GAA- -----(aga- 3181 aca)-----A N-NGUGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-c cacaguacc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------A 3841 G-A-GC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g aa---)---- ---------- ---------- UAG-AAaauu 4021 u--------- ------ACGA --AAAGG-GG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) U-AC-C--CC -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GAGGGA(- uaaua---ag n-)GCCCUC~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.grise 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Puffinus griseus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Puffinus griseus. ORGANISM Mitochondrion Puffinus griseus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X82533 ID MPGS12RNA standard; DNA; ORG; 377 BP. XX AC X82533; XX DT 09-NOV-1994 (Rel. 41, Created) DT 09-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE P.griseus mitochondrion 12S rRNA gene XX KW 12S rRNA gene; mitochondrial ribosomal rna. XX OS Puffinus griseus OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; OC Neornithes; Neognathae; Procellariiformes; Procellariidae; OC Puffinus. XX OG Mitochondrion XX RN [1] RP 1-377 RA Wallis G.P.; RT ; RL Submitted (04-NOV-1994) to the EMBL/GenBank/DDBJ databases. RL G.P. Wallis, University of Otago, Dept of Zoology, PO Box 56, RL Dunedin, NEW ZEALAND XX RN [2] RP 1-377 RA Paterson A.M., Gray R.D., Wallis G.P.; RT "Petrels, penguins and parsimony: Does cladistic analysis of RT behaviour reflect seabird phylogeny?"; RL Evolution 0:0-0(0). XX FH Key Location/Qualifiers FH FT source 1..377 FT /organism="Puffinus griseus" FT /isolate="birds f & j" FT /map="nucleotide number 1770" FT /mitochondrion FT rRNA 1..377 FT /product="12S mitochondrial ribosomal RNA" XX SQ Sequence 377 BP; 123 A; 101 C; 81 G; 72 T; 0 other; BASE COUNT 123 a 101 c 81 g 72 t 4836 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(cuac)c g---A-AGUA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CUCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA A-ACCCAACC GCUCUUUGCC ---------- ---------- 2881 (-------aa ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUU(C --CCU)GAA- -----(aga- 3181 aca)-----A C-AGUGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-c cacaguacc- 3781 ---------G CUAGCA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------A 3841 G-A-GC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g aa---)---- ---------- ---------- UAG-AAaauu 4021 uu-------- ------ACGA --AAAGG-GG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) U-AC-C--CC -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GAGGGA(- uaaua---ag u-)GCCCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCU--GGCC 4261 CUGGAG-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.hutto 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Puffinus huttoni. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Puffinus huttoni. ORGANISM Mitochondrion Puffinus huttoni. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X82524 ID MPH12SRNA standard; DNA; ORG; 377 BP. XX AC X82524; XX DT 09-NOV-1994 (Rel. 41, Created) DT 09-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE P.huttoni mitochondrion 12S rRNA gene XX KW 12S rRNA gene; mitochondrial ribosomal rna. XX OS Puffinus huttoni OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; OC Neornithes; Neognathae; Procellariiformes; Procellariidae; OC Puffinus. XX OG Mitochondrion XX RN [1] RP 1-377 RA Wallis G.P.; RT ; RL Submitted (04-NOV-1994) to the EMBL/GenBank/DDBJ databases. RL G.P. Wallis, University of Otago, Dept of Zoology, PO Box 56, RL Dunedin, NEW ZEALAND XX RN [2] RP 1-377 RA Paterson A.M., Gray R.D., Wallis G.P.; RT "Petrels, penguins and parsimony: Does cladistic analysis of RT behaviour reflect seabird phylogeny?"; RL Evolution 0:0-0(0). XX FH Key Location/Qualifiers FH FT source 1..377 FT /organism="Puffinus huttoni" FT /isolate="birds i & j" FT /map="nucleotide number 1770" FT /mitochondrion FT rRNA 1..377 FT /product="12S mitochondrial ribosomal RNA" XX SQ Sequence 377 BP; 118 A; 97 C; 83 G; 79 T; 0 other; BASE COUNT 118 a 97 c 83 g 79 t 4836 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(uuac)u g---A-AGUA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CUCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA A-ACCCAACC GCUCUUUGCC ---------- ---------- 2881 (-------aa ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUU(U --CCU)GAA- -----(agu- 3181 aua)-----A C-AGUGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-c cccagcauc- 3781 ---------G CUAGCA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------A 3841 G-G-GC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g ag---)---- ---------- ---------- UAG-AAaacu 4021 uu-------- ------ACGA --AAAGG-GG U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) U-AC-C--CC -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- uaaua---aa u-)GCCCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCU--GGCC 4261 CUGGAG-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.aesti 5213 bp RNA RNA 31-MAY-1998 DEFINITION Mitochondrion Amazona aestiva.; . ACCESSION U70738 KEYWORDS . SOURCE Mitochondrion Amazona aestiva. ORGANISM Mitochondrion Amazona aestiva. REFERENCE 1 (bases 1 to 333) AUTHORS Miyaki,C.Y., Matioli,S.R., Burke,T. and Wajntal,A. TITLE Parrot evolution and paleogeographical events: Mitochondrial DNA evidences JOURNAL Mol. Biol. Evol. 15, 544-551 (1998) STANDARD No information REFERENCE 2 (bases 1 to 333) AUTHORS Miyaki,C.Y., Matioli,S.R., Burke,T. and Wajntal,A. TITLE Direct Submission JOURNAL Submitted (13-SEP-1996) Biology/Genetics, Institute of Biosciences, University of Sao Paulo, Rua do Matao, 277, Sao Paulo, SP 05508-900, Brazil STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U70738 BASE COUNT 109 a 101 c 68 g 55 t 4880 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~~~--)---- 1261 ---------- ---------- --~~~~~~~~ ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~-- -----(~~~~ ~~-------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~~-)-- -------~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -----|~~~~ ~~~~~~~~~~ ----~~~~(~ 2341 ~~~~~)~~~| ~~~------~ ~~~~-~~~~~ ~~~------- ----~~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~-~~ |~~|~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~-cacaaaCA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUC C-ACCCGACC ACUUCUUGCC ---------- ---------- 2881 (-------aa aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC UC-CA|G-CC CAC-|CUC(u g-UGA)GAG- -----(-uac 3181 a--)-----A C-AGUGAGCC CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ccucacccc- 3781 ---------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 A-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAcacc 4021 ca-------- ------ACGA --AAAGG-GG C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAA--CC) U-GC-C--CC -A--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-gcggga(- ua~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~~ ~--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.ventr 5213 bp RNA RNA 02-JAN-1999 DEFINITION Mitochondrion Amazona ventralis.; . ACCESSION U89230 KEYWORDS . SOURCE Mitochondrion Amazona ventralis. ORGANISM Mitochondrion Amazona ventralis. REFERENCE 1 (bases 1 to 922) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 922) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (11-FEB-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89230 BASE COUNT 297 a 300 c 174 g 151 t 4291 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUAAUU -C-UCGC-UC |AA-CA--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCACCCCAGU GCAAA---CG C|CCU-Aaag --cc-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---cacc a----)---- 1261 ---------- ---------- --ag--gca- c--uAGGAGC |--------- aGGCAUCA-- 1321 -GGCGCAC-- -----(cucu ---------- ---------- ---------- ------)--- 1381 ---GU|---a GCCCA--AGA C|GCCAU-GC --|------- (--ac--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUGGGC( ---------- ----GUAA)G CCCGA-CUU| 1561 A|-GCUA-G- AG-CGA---- ---------- ---------- (-cca----- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -AAC-CCA-- 1981 AAUUA-ACCG U--------a caCGGC|GUA AAGAGUGG-- -ccccagac- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------uauu -a-aaguaga -uuaag--au -----|CAAA CCUCAA-CCU a---AGCC(G 2341 UCACA)AGC| CCA------A GGUC-CUCCA AAG------- -----cccaa -ccu(-aaaa 2401 -)ac|g---- ----aucuua acaccaac-g accc-----a ucc-cacccc acGAA-AGCC 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 U--GAUG-CU |UC|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(agac)a c---A-AACA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUC C-ACCCGACC ACUUCUUGCC ---------- ---------- 2881 (---aaaa-- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC CC-CA|G-CC CAC-|CUC(U --GU-)GAG- -----(agc- 3181 aca)-----A C-AGUGAGCC CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ccccacu 3781 cc-------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC CAC------- ---------G 3841 A-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAcacc 4021 ca-------- ------ACGA --AAAGG-GG C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAcc--) U-GC-C--CC -A--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- caauc-aa-- --)GCCCCCU U-uaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGUC 4261 CUAGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcccc- 4381 uacaa-accc acuaacuaau aa---aacua ---auagcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAAG-AGG-U ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.hyaci 5213 bp RNA RNA 31-MAY-1998 DEFINITION Mitochondrion Anodorhynchus hyacinthinus.; . ACCESSION U70741 KEYWORDS . SOURCE Mitochondrion Anodorhynchus hyacinthinus. ORGANISM Mitochondrion Anodorhynchus hyacinthinus. REFERENCE 1 (bases 1 to 331) AUTHORS Miyaki,C.Y., Matioli,S.R., Burke,T. and Wajntal,A. TITLE Parrot evolution and paleogeographical events: Mitochondrial DNA evidences JOURNAL Mol. Biol. Evol. 15, 544-551 (1998) STANDARD No information REFERENCE 2 (bases 1 to 331) AUTHORS Miyaki,C.Y., Matioli,S.R., Burke,T. and Wajntal,A. TITLE Direct Submission JOURNAL Submitted (13-SEP-1996) Biology/Genetics, Institute of Biosciences, University of Sao Paulo, Rua do Matao, 277, Sao Paulo, SP 05508-900, Brazil STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U70741 BASE COUNT 111 a 97 c 69 g 54 t 4882 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~~~--)---- 1261 ---------- ---------- --~~~~~~~~ ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~-- -----(~~~~ ~~-------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~~-)-- -------~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -----|~~~~ ~~~~~~~~~~ ----~~~~(~ 2341 ~~~~~)~~~| ~~~------~ ~~~~-~~~~~ ~~~------- ----~~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~-~~ |~~|~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~-cacaaGCA 2701 U-u|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CUCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUC C-ACCCGACC ACUCCUUGCC ---------- ---------- 2881 (-------aa aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(A --UGA)GAG- -----(-cac 3181 a--)-----G C-AGUGAGCC CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -ccacagcc- 3781 ---------A CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 A-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAaacc 4021 ca-------- ------ACGA --AAGGG-GG C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAA--CC) U-AC-C--CC -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-gcagga(- ca~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~~ ~--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.arara 5213 bp RNA RNA 31-MAY-1998 DEFINITION Mitochondrion Ara ararauna.; . ACCESSION U70739 KEYWORDS . SOURCE Mitochondrion Ara ararauna. ORGANISM Mitochondrion Ara ararauna. REFERENCE 1 (bases 1 to 332) AUTHORS Miyaki,C.Y., Matioli,S.R., Burke,T. and Wajntal,A. TITLE Parrot evolution and paleogeographical events: Mitochondrial DNA evidences JOURNAL Mol. Biol. Evol. 15, 544-551 (1998) STANDARD No information REFERENCE 2 (bases 1 to 332) AUTHORS Miyaki,C.Y., Matioli,S.R., Burke,T. and Wajntal,A. TITLE Direct Submission JOURNAL Submitted (13-SEP-1996) Biology/Genetics, Institute of Biosciences, University of Sao Paulo, Rua do Matao, 277, Sao Paulo, SP 05508-900, Brazil STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U70739 BASE COUNT 110 a 94 c 70 g 58 t 4881 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~~~--)---- 1261 ---------- ---------- --~~~~~~~~ ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~-- -----(~~~~ ~~-------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~~-)-- -------~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -----|~~~~ ~~~~~~~~~~ ----~~~~(~ 2341 ~~~~~)~~~| ~~~------~ ~~~~-~~~~~ ~~~------- ----~~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~-~~ |~~|~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~-cacaaaCA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CUCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAACCC 2821 A--------- ----)CGAUU C-ACCCGACC ACUUCUUGCC ---------- ---------- 2881 (-------aa aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC AC-CA|G-CC CAC-|CUC(G --UGA)GAG- -----(-cac 3181 a--)-----A C-AGUGAGCC CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ccacagucc- 3781 ---------A CUAACA-AGA C-AGGUCgaG G|UAUA|GCC UAU------- ---------G 3841 A-A-GU-GG- -G-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAaacc 4021 ca-------- ------ACGA --AAGGG-GA C-U(------ ---------- ---------- 4081 ---------- ---------- UGAAA--CC) U-GU-C--CC -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-gcagga(- ua~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~~ ~--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.aurea 5213 bp RNA RNA 31-MAY-1998 DEFINITION Mitochondrion Aratinga aurea.; . ACCESSION U70740 KEYWORDS . SOURCE Mitochondrion Aratinga aurea. ORGANISM Mitochondrion Aratinga aurea. REFERENCE 1 (bases 1 to 332) AUTHORS Miyaki,C.Y., Matioli,S.R., Burke,T. and Wajntal,A. TITLE DNA evidences Parrot evolution and paleogeographical events: Mitochondrial JOURNAL Mol. Biol. Evol. 15, 544-551 (1998) STANDARD No information REFERENCE 2 (bases 1 to 332) AUTHORS Miyaki,C.Y., Matioli,S.R., Burke,T. and Wajntal,A. TITLE Direct Submission JOURNAL Submitted (13-SEP-1996) Biology/Genetics, Institute of Biosciences, University of Sao Paulo, Rua do Matao, 277, Sao Paulo, SP 05508-900, Brazil STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U70740 BASE COUNT 110 a 92 c 70 g 60 t 4881 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~~~--)---- 1261 ---------- ---------- --~~~~~~~~ ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~-- -----(~~~~ ~~-------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~~-)-- -------~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -----|~~~~ ~~~~~~~~~~ ----~~~~(~ 2341 ~~~~~)~~~| ~~~------~ ~~~~-~~~~~ ~~~------- ----~~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~-~~ |~~|~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~-cacagGCA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -AUAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CUCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUU C-ACCCGACC ACUUCUUGCC ---------- ---------- 2881 (-------aa aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(A --UGA)GAG- -----(-cac 3181 a--)-----A U-AGUGAGCC CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ccacagccc- 3781 ---------A CUAACA-AGA C-AGGUCgaG G|UAUA|GCC UAU------- ---------G 3841 G-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAaacc 4021 ca-------- ------ACGA --AAGGG-GA U-U(------ ---------- ---------- 4081 ---------- ---------- UGAAA--UC) U-AU-C--CC -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-gcagga(- ca~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~~ ~--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.spixi 5213 bp RNA RNA 31-MAY-1998 DEFINITION Mitochondrion Cyanopsitta spixii.; . ACCESSION U70742 KEYWORDS . SOURCE Mitochondrion Cyanopsitta spixii. ORGANISM Mitochondrion Cyanopsitta spixii. REFERENCE 1 (bases 1 to 332) AUTHORS Miyaki,C.Y., Matioli,S.R., Burke,T. and Wajntal,A. TITLE DNA evidences Parrot evolution and paleogeographical events: Mitochondrial JOURNAL Mol. Biol. Evol. 15, 544-551 (1998) STANDARD No information REFERENCE 2 (bases 1 to 332) AUTHORS Miyaki,C.Y., Matioli,S.R., Burke,T. and Wajntal,A. TITLE Direct Submission JOURNAL Submitted (13-SEP-1996) Biology/Genetics, Institute of Biosciences, University of Sao Paulo, Rua do Matao, 277, Sao Paulo, SP 05508-900, Brazil STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U70742 BASE COUNT 108 a 98 c 70 g 56 t 4881 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~~~--)---- 1261 ---------- ---------- --~~~~~~~~ ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~-- -----(~~~~ ~~-------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~~-)-- -------~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -----|~~~~ ~~~~~~~~~~ ----~~~~(~ 2341 ~~~~~)~~~| ~~~------~ ~~~~-~~~~~ ~~~------- ----~~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~-~~ |~~|~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~-cacaaaCA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CUCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUU C-ACCCGACC ACUCCUUGCC ---------- ---------- 2881 (-------aa aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UU- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(A --UGA)GAG- -----(-cac 3181 a--)-----G C-AGUGAGCU CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ccacaaccc- 3781 ---------G CUAACA-AGA C-AGGUCgAG G|UAUA|GCC CAU------- ---------G 3841 G-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAaacc 4021 ua-------- ------ACGA --CAAGG-AG C-U(------ ---------- ---------- 4081 ---------- ---------- UGAAA--UC) C-GC-U--CC -C--AGAAG- -GCGGAUcua 4141 g-c--AGUAA A-gcagga(- ug~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~~ ~--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.accip 5213 bp RNA RNA 31-MAY-1998 DEFINITION Mitochondrion Deroptyus accipitrinus.; . ACCESSION U70743 KEYWORDS . SOURCE Mitochondrion Deroptyus accipitrinus. ORGANISM Mitochondrion Deroptyus accipitrinus. REFERENCE 1 (bases 1 to 338) AUTHORS Miyaki,C.Y., Matioli,S.R., Burke,T. and Wajntal,A. TITLE Parrot evolution and paleogeographical events: Mitochondrial DNA evidences JOURNAL Mol. Biol. Evol. 15, 544-551 (1998) STANDARD No information REFERENCE 2 (bases 1 to 338) AUTHORS Miyaki,C.Y., Matioli,S.R., Burke,T. and Wajntal,A. TITLE Direct Submission JOURNAL Submitted (13-SEP-1996) Biology/Genetics, Institute of Biosciences, University of Sao Paulo, Rua do Matao, 277, Sao Paulo, SP 05508-900, Brazil STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U70743 BASE COUNT 111 a 93 c 69 g 65 t 4875 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~~~--)---- 1261 ---------- ---------- --~~~~~~~~ ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~-- -----(~~~~ ~~-------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~~-)-- -------~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -----|~~~~ ~~~~~~~~~~ ----~~~~(~ 2341 ~~~~~)~~~| ~~~------~ ~~~~-~~~~~ ~~~------- ----~~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~-~~ |~~|~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~-cauaaGCA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CUCU-AA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUU C-ACCCGACC ACUUCUCGCC ---------- ---------- 2881 (-------aa aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CUC(c a-UGA)GAG- -----(-cac 3181 a--)-----A C-AGUGAGCU CAA-CAAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-c cacaaucuc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 A-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAaauc 4021 uuuuuaa--- ------ACGG --AAGGG-GG C-U(------ ---------- ---------- 4081 ---------- ---------- UGAAA--UC) C-GC-C--CC -C--AGAAG- -GUGGAUUUA 4141 G-C--AGUAA A-gcagga(- ua~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~~ ~--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.G.guaro 5213 bp RNA RNA 31-MAY-1998 DEFINITION Mitochondrion Guaruba guarouba.; . ACCESSION U70744 KEYWORDS . SOURCE Mitochondrion Guaruba guarouba. ORGANISM Mitochondrion Guaruba guarouba. REFERENCE 1 (bases 1 to 332) AUTHORS Miyaki,C.Y., Matioli,S.R., Burke,T. and Wajntal,A. TITLE Parrot evolution and paleogeographical events: Mitochondrial DNA evidences JOURNAL Mol. Biol. Evol. 15, 544-551 (1998) STANDARD No information REFERENCE 2 (bases 1 to 332) AUTHORS Miyaki,C.Y., Matioli,S.R., Burke,T. and Wajntal,A. TITLE Direct Submission JOURNAL Submitted (13-SEP-1996) Biology/Genetics, Institute of Biosciences, University of Sao Paulo, Rua do Matao, 277, Sao Paulo, SP 05508-900, Brazil STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U70744 BASE COUNT 113 a 97 c 65 g 57 t 4881 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~~~--)---- 1261 ---------- ---------- --~~~~~~~~ ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~-- -----(~~~~ ~~-------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~~-)-- -------~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -----|~~~~ ~~~~~~~~~~ ----~~~~(~ 2341 ~~~~~)~~~| ~~~------~ ~~~~-~~~~~ ~~~------- ----~~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~-~~ |~~|~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~-cacaaaCA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|ACGGUG- CUCUACA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUU C-ACCCGACC ACUUCUUGCC ---------- ---------- 2881 (-------aa aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC AC-CA|G-CC CAC-|CUC(A --UGA)GAG- -----(-cac 3181 a--)-----A C-AGCGAGCC CAA-CAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- cuacaaccc- 3781 ---------A CUAACA-AGA C-AGGUCgaG G|UAUA|GCC UAU------- ---------G 3841 A-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAaacc 4021 ca-------- ------ACGA --AAGGG-GG C-U(------ ---------- ---------- 4081 ---------- ---------- UGAAA--CC) U-GC-C--CC -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-gcaguc(- aa~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~~ ~--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.undul 5213 bp RNA RNA 31-MAY-1998 DEFINITION Mitochondrion Melopsittacus undulatus.; . ACCESSION U70745 KEYWORDS . SOURCE Mitochondrion Melopsittacus undulatus. ORGANISM Mitochondrion Melopsittacus undulatus. REFERENCE 1 (bases 1 to 338) AUTHORS Miyaki,C.Y., Matioli,S.R., Burke,T. and Wajntal,A. TITLE Parrot evolution and paleogeographical events: Mitochondrial DNA evidences JOURNAL Mol. Biol. Evol. 15, 544-551 (1998) STANDARD No information REFERENCE 2 (bases 1 to 338) AUTHORS Miyaki,C.Y., Matioli,S.R., Burke,T. and Wajntal,A. TITLE Direct Submission JOURNAL Submitted (13-SEP-1996) Biology/Genetics, Institute of Biosciences, University of Sao Paulo, Rua do Matao, 277, Sao Paulo, SP 05508-900, Brazil STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U70745 BASE COUNT 118 a 100 c 65 g 55 t 4875 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~~~--)---- 1261 ---------- ---------- --~~~~~~~~ ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~-- -----(~~~~ ~~-------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~~-)-- -------~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -----|~~~~ ~~~~~~~~~~ ----~~~~(~ 2341 ~~~~~)~~~| ~~~------~ ~~~~-~~~~~ ~~~------- ----~~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~-~~ |~~|~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~-cacaaaCA 2701 C-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUA C-ACCCGACC ACUUCUUGCC ---------- ---------- 2881 (---a---au aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(a --aau)GAG- -----(-agc 3181 aca)-----A C-AGUGAGCC CAA-AAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --cuacccc- 3781 ---------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 A-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAcaua 4021 ccccca---- ------ACGA --AAAGA-GG C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-CU) G-CC-U--CU -A--ACAAG- -GCGGAUUUA 4141 G-C--AGUAA A-gaggaa(- ca~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~~ ~--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.finsc 5213 bp RNA RNA 02-JAN-1999 DEFINITION Mitochondrion Micropsitta finschii.; . ACCESSION U89232 KEYWORDS . SOURCE Mitochondrion Micropsitta finschii. ORGANISM Mitochondrion Micropsitta finschii. REFERENCE 1 (bases 1 to 927) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 927) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (11-FEB-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89232 BASE COUNT 317 a 288 c 163 g 159 t 4286 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC C|AACCU-UA CCG-UUAAUU -C-UUGC-CC |AA-UA--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCACCCCAGU GCAAA---CG C|CCC-Uaac --cc-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---uacc a----)---- 1261 ---------- ---------- --ag--aca- a--aAGGAGC |--------- aGGCAUCA-- 1321 -GGCACAC-- -----(auca ac-------- ---------- ---------- ------)--- 1381 ---GU|---a GCCCA--AGA C|GCCAC-GC --|------- (-cca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAGGC( ---------- ----GUAA)G CCUGA-CUU| 1561 A|-GUUA-G- AG-CAA---- ---------- ---------- (-cca----- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACCG U--------a aaCGGC|GUA AAGAGUGG-- -acccaa--- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----aaaau aucuaaacca auuaag--ac -----|CAAA CCACCA-CAA cac-AGCU(G 2341 UCACA)AGC| UCA------A AGCA-CAUCA AAG------- -----cccaa -ccu(-aaaa 2401 -)ac|g---- ----aucuua acaccuaa-g acu------u acc-cacccc acGAA-AGCC 2461 A-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCU 2521 U--GAUG-UU |UC|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -ca(acac)a a---A-AACA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUA C-ACCCGACC ACUUCUCGCC ---------- ---------- 2881 (---aaag-- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC AC-CA|G-CC CAC-|CUC(C --UU-)GAG- -----(agu- 3181 aca)-----A C-AGUGAGCC CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cacuauc 3781 c--------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 A-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AUaaac 4021 ucc------- ------ACGA --AAAGG-GG C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAuc--) U-GC-C--CC -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GAGAGA(- caauc-aa-- --)GCCCUCC U-uaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCU--GGUC 4261 CUAGGG-CA- CGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< auaagcccc- 4381 caaca-cccu aacuaacaca a----ucacc ---acagcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GACG-AGG-U ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.N.nenda 5213 bp RNA RNA 31-MAY-1998 DEFINITION Mitochondrion Nandayus nenday.; . ACCESSION U70746 KEYWORDS . SOURCE Mitochondrion Nandayus nenday. ORGANISM Mitochondrion Nandayus nenday. REFERENCE 1 (bases 1 to 332) AUTHORS Miyaki,C.Y., Matioli,S.R., Burke,T. and Wajntal,A. TITLE Parrot evolution and paleogeographical events: Mitochondrial DNA evidences JOURNAL Mol. Biol. Evol. 15, 544-551 (1998) STANDARD No information REFERENCE 2 (bases 1 to 332) AUTHORS Miyaki,C.Y., Matioli,S.R., Burke,T. and Wajntal,A. TITLE Direct Submission JOURNAL Submitted (13-SEP-1996) Biology/Genetics, Institute of Biosciences, University of Sao Paulo, Rua do Matao, 277, Sao Paulo, SP 05508-900, Brazil STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U70746 BASE COUNT 109 a 95 c 71 g 57 t 4881 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~~~--)---- 1261 ---------- ---------- --~~~~~~~~ ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~-- -----(~~~~ ~~-------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~~-)-- -------~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -----|~~~~ ~~~~~~~~~~ ----~~~~(~ 2341 ~~~~~)~~~| ~~~------~ ~~~~-~~~~~ ~~~------- ----~~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~-~~ |~~|~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~-cacagaCA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CUCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUC C-ACCCGACC ACUUCUUGCC ---------- ---------- 2881 (-------aa aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(A --UGA)GAG- -----(-cau 3181 a--)-----A C-AGUGAGCC CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ccacaaccc- 3781 ---------A CUAACA-AGA C-AGGUCgaG G|UAUA|GCC UAU------- ---------G 3841 A-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g aa---)---- ---------- ---------- UAG-AAgacu 4021 ca-------- ------ACGA --AAGGG-GG C-U(------ ---------- ---------- 4081 ---------- ---------- UGAAA--CC) U-GC-C--CC -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-gcagga(- ua~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~~ ~--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.menst 5213 bp RNA RNA 31-MAY-1998 DEFINITION Mitochondrion Pionus menstruus.; . ACCESSION U70747 KEYWORDS . SOURCE Mitochondrion Pionus menstruus. ORGANISM Mitochondrion Pionus menstruus. REFERENCE 1 (bases 1 to 333) AUTHORS Miyaki,C.Y., Matioli,S.R., Burke,T. and Wajntal,A. TITLE Parrot evolution and paleogeographical events: Mitochondrial DNA evidences JOURNAL Mol. Biol. Evol. 15, 544-551 (1998) STANDARD No information REFERENCE 2 (bases 1 to 333) AUTHORS Miyaki,C.Y., Matioli,S.R., Burke,T. and Wajntal,A. TITLE Direct Submission JOURNAL Submitted (13-SEP-1996) Biology/Genetics, Institute of Biosciences, University of Sao Paulo, Rua do Matao, 277, Sao Paulo, SP 05508-900, Brazil STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U70747 BASE COUNT 108 a 99 c 68 g 58 t 4880 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~~~--)---- 1261 ---------- ---------- --~~~~~~~~ ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~-- -----(~~~~ ~~-------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~~-)-- -------~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -----|~~~~ ~~~~~~~~~~ ----~~~~(~ 2341 ~~~~~)~~~| ~~~------~ ~~~~-~~~~~ ~~~------- ----~~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~-~~ |~~|~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~-cacagaCA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUC C-ACCCGACC ACUUCUUGCC ---------- ---------- 2881 (-------aa aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC CC-CA|G-CC CAC-|CUC(u a-UGA)GAG- -----(-uac 3181 a--)-----A U-AGUGAGCU CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ccacacccc- 3781 ---------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC UAC------- ---------G 3841 A-A-GU-GG- -U-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAcacc 4021 ca-------- ------ACGA --AAGGG-GG U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAA--CC) U-GC-C--CC -A--AGAAG- -GCGGAUUUA 4141 u-c--AGUAA A-gcggga(- ca~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~~ ~--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.senil 5213 bp RNA RNA 02-JAN-1999 DEFINITION Mitochondrion Pionus senilis.; . ACCESSION U89233 KEYWORDS . SOURCE Mitochondrion Pionus senilis. ORGANISM Mitochondrion Pionus senilis. REFERENCE 1 (bases 1 to 925) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 925) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (11-FEB-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89233 BASE COUNT 299 a 290 c 171 g 165 t 4288 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUAAUU -C-UCGC-UC |AA-CA--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCACCCCAGU GCAAA---CG C|CCU-Caaa cccc-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---ugcc a----)---- 1261 ---------- ---------- --ag--gca- c--uaggaGC |--------- aGGCAUCA-- 1321 -GGCACAC-- -----(uucu ---------- ---------- ---------- ------)--- 1381 ---GU|---a GCCCA--AGA C|GCCAC-GC --|------- (-cac--)-- -------GC| 1441 CACU------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAGGC( ---------- ----GAAA)G CCUGA-CUU| 1561 A|-GUUA-G- AG-CAA---- ---------- ---------- (-uua----- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -AAC-CCA-- 1981 AAUUA-ACUG U--------a caCGGC|GUA AAGAGUGG-- -ucccagac- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------uauu -a-gaguaga -uuaag--au -----|UAAA CUUCAACCCA ----AGCC(G 2341 UCACA)AGC| CUA------G GGUC-CCCCG AAA------- -----cccaa -ccu(-aaaa 2401 -)ac|g---- ----aucuua acacuaac-g accu-----a ccc-uacuCC ACGAA-AGCC 2461 A-GGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 U--GAUG-UC |U-|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- ccc(aaac)a c---A-GACA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUC C-ACCCGACC ACUUCUUGCC ---------- ---------- 2881 (---aaaa-- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC CC-CA|G-CC CAC-|CUC(U --AU-)GAG- -----(agc- 3181 aca)-----A U-AGUGAGCU CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ccacacc 3781 cc-------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC CAC------- ---------G 3841 A-A-GU-GG- -U-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAcacc 4021 ca-------- ------ACGA --AAAGA-GG C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAcc--) U-GC-C--CC -A--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- caauc-aa-- --)GCCCCCU U-uaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGUC 4261 CUAGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcccc- 4381 cauaa-acac auuaacuaau ac---aacca ---gcagcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAAG-AGG-U ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.fulgi 5213 bp RNA RNA 02-JAN-1999 DEFINITION Mitochondrion Psittrichas fulgidus.; . ACCESSION U89231 KEYWORDS . SOURCE Mitochondrion Psittrichas fulgidus. ORGANISM Mitochondrion Psittrichas fulgidus. REFERENCE 1 (bases 1 to 948) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 948) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (11-FEB-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89231 BASE COUNT 316 a 303 c 170 g 159 t 4265 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUUAUU -C-UCGC-CC |AA-UA--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCACCCCAGU GCAAA---CG C|CCU-Caac --cc-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---uacu a----)---- 1261 ---------- ---------- --ag--aca- a--aAGGAGC |--------- aGGCAUCA-- 1321 -GGCACAC-- -----(ccau c--------- ---------- ---------- ------)--- 1381 ---GU|---a GCCCA--AGA C|ACCAC-GC --|------- (-ccc--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAGGC( ---------- ----GCAA)G CCUGA-CUU| 1561 A|-GUCA-A- AG-CGA---- ---------- ---------- (-ucca---- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACCA C--------a caCGGC|GUA AAGAGUGG-- -ccca----- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----ggacu aucacaacca acuaag--au -----|UAAA CCACAG-CCC a---AGCC(G 2341 UCAUA)AAC| CCA------A GAUG-CCCCG AAA------- -----cccaa -ccu(-aaaa 2401 -)ac|g---- ----aucuua gcacucac-g accc-----g ccc-cacccc acUAA-AGCU 2461 A-GAA---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCC 2521 U--GAUG-UU |UU|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(acac)a c---A-AACA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCUACA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCGACC ACUUCUUGCC ---------- ---------- 2881 (---aaaa-- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CUC(C --GU-)GAG- -----(agu- 3181 aca)-----A C-AGUGAGCC CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ccaucaa 3781 ccc------A CUAACA-AGA C-AGGUCAAG G|UAUA|GCC UAC------- ---------G 3841 A-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ac ag---)---- ---------- ---------- UAG-AAuauc 4021 aa-------- ------ACGA --AAAGG-GG C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAcc--) U-GC-C--CC -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GAGAGA(- caauc-aa-- --)GCUCUCU U-uaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACC--GGUC 4261 CUAGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< auaaggcua- 4381 cccca-caca cuaaguaauc ca---acaaa ---uagcca- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-C AAGUCGUAAC AAGGUAAG-U GUA~~~(~~~ 4621 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.picta 5213 bp RNA RNA 31-MAY-1998 DEFINITION Mitochondrion Pyrrhura picta.; . ACCESSION U70748 KEYWORDS . SOURCE Mitochondrion Pyrrhura picta. ORGANISM Mitochondrion Pyrrhura picta. REFERENCE 1 (bases 1 to 334) AUTHORS Miyaki,C.Y., Matioli,S.R., Burke,T. and Wajntal,A. TITLE Parrot evolution and paleogeographical events: Mitochondrial DNA evidences JOURNAL Mol. Biol. Evol. 15, 544-551 (1998) STANDARD No information REFERENCE 2 (bases 1 to 334) AUTHORS Miyaki,C.Y., Matioli,S.R., Burke,T. and Wajntal,A. TITLE Direct Submission JOURNAL Submitted (13-SEP-1996) Biology/Genetics, Institute of Biosciences, University of Sao Paulo, Rua do Matao, 277, Sao Paulo, SP 05508-900, Brazil STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U70748 BASE COUNT 108 a 100 c 70 g 56 t 4879 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~~~--)---- 1261 ---------- ---------- --~~~~~~~~ ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~-- -----(~~~~ ~~-------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (-~~~~-)-- -------~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -----|~~~~ ~~~~~~~~~~ ----~~~~(~ 2341 ~~~~~)~~~| ~~~------~ ~~~~-~~~~~ ~~~------- ----~~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~-~~ |~~|~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~-cacgaaCA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CUCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUU C-ACCCGACC AUUUCUCGCC ---------- ---------- 2881 (-------aa ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(A --UGA)GAG- -----(-cac 3181 a--)-----A C-AGUGAGCC CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- cuacagccc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 A-A-AU-GG- -A-AGA--UA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAuaac 4021 ccca------ ------ACGG --AAGGG-GG C-C(------ ---------- ---------- 4081 ---------- ---------- UGAAA--CC) U-GC-C--CC -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-gcagga(- ca~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~~ ~--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.forst 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Aptenodytes forsteri. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Aptenodytes forsteri. ORGANISM Mitochondrion Aptenodytes forsteri. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X82520 ID MAF12SRNA standard; DNA; ORG; 374 BP. XX AC X82520; XX DT 09-NOV-1994 (Rel. 41, Created) DT 09-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE A.forsteri mitochondrion 12S rRNA gene XX KW 12S rRNA gene; mitochondrial ribosomal rna. XX OS Aptenodytes forsteri OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; OC Neornithes; Neognathae; Sphenisciformes; Spheniscidae; Aptenodytes. XX OG Mitochondrion XX RN [1] RP 1-374 RA Wallis G.P.; RT ; RL Submitted (04-NOV-1994) to the EMBL/GenBank/DDBJ databases. RL G.P. Wallis, University of Otago, Dept of Zoology, PO Box 56, RL Dunedin, NEW ZEALAND XX RN [2] RP 1-374 RA Paterson A.M., Gray R.D., Wallis G.P.; RT "Petrels, penguins and parsimony: Does cladistic analysis of RT behaviour reflect seabird phylogeny?"; RL Evolution 0:0-0(0). XX FH Key Location/Qualifiers FH FT source 1..374 FT /organism="Aptenodytes forsteri" FT /map="nucleotide number 1770" FT /mitochondrion FT rRNA 1..374 FT /product="12S mitochondrial ribosomal RNA" XX SQ Sequence 374 BP; 112 A; 105 C; 87 G; 66 T; 4 other; BASE COUNT 112 a 105 c 87 g 66 t 4843 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--NAUA-CN |NC|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -ca(cnac)u ----A-AAGA 2701 U-C|--C|GC C-uGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAGA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUG C-ACCCAACC GCCCCUUGCC ---------- ---------- 2881 (-------ag ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUC(G --CCU)GAG- -----(agc- 3181 aca)-----A C-AGUGAGCA UAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ccuagccac- 3781 ---------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-G-GC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ag---)---- ---------- ---------- UAG-ACaauu 4021 cc-------- ------ACGG --AAGGG-GA C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) C-GU-C--CC -U--AGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- caaua-gu-- --)GCCCCCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCU--GGCC 4261 CUGAGG-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.E.pachy 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Eudyptes pachyrhynchus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Eudyptes pachyrhynchus. ORGANISM Mitochondrion Eudyptes pachyrhynchus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X82522 ID MEP12SRNA standard; DNA; ORG; 375 BP. XX AC X82522; XX DT 09-NOV-1994 (Rel. 41, Created) DT 09-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE E.pachyrhynchus mitochondrion 12S rRNA gene XX KW 12S rRNA gene; mitochondrial ribosomal rna. XX OS Eudyptes pachyrhynchus OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; OC Neornithes; Neognathae; Sphenisciformes; Spheniscidae; Eudyptes. XX OG Mitochondrion XX RN [1] RP 1-375 RA Wallis G.P.; RT ; RL Submitted (04-NOV-1994) to the EMBL/GenBank/DDBJ databases. RL G.P. Wallis, University of Otago, Dept of Zoology, PO Box 56, RL Dunedin, NEW ZEALAND XX RN [2] RP 1-375 RA Paterson A.M., Gray R.D., Wallis G.P.; RT "Petrels, penguins and parsimony: Does cladistic analysis of RT behaviour reflect seabird phylogeny?"; RL Evolution 0:0-0(0). XX FH Key Location/Qualifiers FH FT source 1..375 FT /organism="Eudyptes pachyrhynchus" FT /isolate="birds 20 & 45" FT /map="nucleotide number 1770" FT /mitochondrion FT rRNA 1..375 FT /product="12S mitochondrial ribosomal RNA" XX SQ Sequence 375 BP; 113 A; 115 C; 82 G; 65 T; 0 other; BASE COUNT 113 a 115 c 82 g 65 t 4838 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ---GAUA-CU |CC|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- cuc(ccac)u a---A-AGUA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAGA-UC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCAACC CCCCCUUGCC ---------- ---------- 2881 (-------aa aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(C --CCU)GAG- -----(agu- 3181 cua)-----A C-AGUGAGCG AAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -cccaccuc- 3781 ---------G CUAGCA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-G-GC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- aga--)---- ---------- ---------- UAG-ACaacu 4021 uc-------- ------ACGG --AAAGG-GA C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) C-GU-C--CC -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- uaaua-aa-- --)GCCCCCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACC--GGCC 4261 CUGAGG-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.antip 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Megadyptes antipodes. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Megadyptes antipodes. ORGANISM Mitochondrion Megadyptes antipodes. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X82536 ID MMA12SRNA standard; DNA; ORG; 376 BP. XX AC X82536; XX DT 09-NOV-1994 (Rel. 41, Created) DT 09-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE M.antipodes mitochondrion 12S rRNA gene XX KW 12S rRNA gene; mitochondrial ribosomal rna. XX OS Megadyptes antipodes OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; OC Neornithes; Neognathae; Sphenisciformes; Spheniscidae; Megadyptes. XX OG Mitochondrion XX RN [1] RP 1-376 RA Wallis G.P.; RT ; RL Submitted (04-NOV-1994) to the EMBL/GenBank/DDBJ databases. RL G.P. Wallis, University of Otago, Dept of Zoology, PO Box 56, RL Dunedin, NEW ZEALAND XX RN [2] RP 1-376 RA Paterson A.M., Gray R.D., Wallis G.P.; RT "Petrels, penguins and parsimony: Does cladistic analysis of RT behaviour reflect seabird phylogeny?"; RL Evolution 0:0-0(0). XX FH Key Location/Qualifiers FH FT source 1..376 FT /organism="Megadyptes antipodes" FT /isolate="birds C & E" FT /map="nucleotide number 1770" FT /mitochondrion FT rRNA 1..376 FT /product="12S mitochondrial ribosomal RNA" XX SQ Sequence 376 BP; 114 A; 109 C; 81 G; 71 T; 1 other; BASE COUNT 114 a 109 c 81 g 71 t 4838 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ---NAUA-CU |CU-C----- ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -ua(ccac)u a---A-AGUA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAGA-UC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCAACC UCCCCUUGCC ---------- ---------- 2881 (---u---aa aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC UUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(C c-c-u)GAG- -----(agc- 3181 cca)-----a c-aGUGGACA UAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -cccac-cc- 3781 ---------G CUAGCA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ga---)---- ---------- ---------- UAG-ACAA-- 4021 cuuuc----- ------ACGG --AAAGG-GA C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) C-GU-C--CC -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GAGGGA(- uaaua-ga-- --)GCCCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACC--GGCC 4261 CUGAGG-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.magel 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Spheniscus magellanicus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Spheniscus magellanicus. ORGANISM Mitochondrion Spheniscus magellanicus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X82527 ID MSM12SRNA standard; DNA; ORG; 376 BP. XX AC X82527; XX DT 09-NOV-1994 (Rel. 41, Created) DT 09-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE S.magellanicus mitochondrion 12S rRNA gene XX KW 12S rRNA gene; mitochondrial ribosomal rna. XX OS Spheniscus magellanicus OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves; OC Neornithes; Neognathae; Sphenisciformes; Spheniscidae; Spheniscus. XX OG Mitochondrion XX RN [1] RP 1-376 RA Wallis G.P.; RT ; RL Submitted (04-NOV-1994) to the EMBL/GenBank/DDBJ databases. RL G.P. Wallis, University of Otago, Dept of Zoology, PO Box 56, RL Dunedin, NEW ZEALAND XX RN [2] RP 1-376 RA Paterson A.M., Gray R.D., Wallis G.P.; RT "Petrels, penguins and parsimony: Does cladistic analysis of RT behaviour reflect seabird phylogeny?"; RL Evolution 0:0-0(0). XX FH Key Location/Qualifiers FH FT source 1..376 FT /organism="Spheniscus magellanicus" FT /isolate="birds 2 & 3" FT /map="nucleotide number 1770" FT /mitochondrion FT rRNA 1..376 FT /product="12S mitochondrial ribosomal RNA" XX SQ Sequence 376 BP; 118 A; 110 C; 79 G; 69 T; 0 other; BASE COUNT 118 a 110 c 79 g 69 t 4837 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(------- -----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~------- ---------- ---------- ------)--- 1381 ---~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~---- ----~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--GAUA-CU |UC|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- cua(ccac)u a---A-AGUA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAGA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCAACC ACCCCUUGCC ---------- ---------- 2881 (-------aa aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(U --CCU)GAG- -----(agc- 3181 cca)-----A C-AGUGAGCA UAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- cccacaucc- 3781 ---------G CUAGCA-AGA C-AGGUCAAG G|UAUA|GCC UAU------- ---------G 3841 G-G-AU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ga---)---- ---------- ---------- UAG-ACaauu 4021 uc-------- ------ACGG --AAGGG-GA C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--C-) C-GU-C--CC -U--AAAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GCGGGA(- uaaua-aa-- --)GCCCCCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACU--GGCC 4261 CUGAGG-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.acadi 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Aegolius acadicus.; . ACCESSION U83759 KEYWORDS . SOURCE Mitochondrion Aegolius acadicus. ORGANISM Mitochondrion Aegolius acadicus. REFERENCE 1 (bases 1 to 986) AUTHORS Knight,A., Sawchuk,S.J. and Yuri,T. Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., TITLE orders based on mitochondrial DNA Phylogenetic relationships among and within select avian JOURNAL SYSTEMATICS: 211-245; Academic Press (1997) (in) Mindell,D.F. (Ed.) ; AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 986) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83759 BASE COUNT 299 a 284 c 219 g 184 t 4227 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC C|AACCU-UA CCG-UUAAUU -A-UUGC-CA |GA-UA--CA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACUCCAGU GUAAA---UG C|CCC-u--- --gc-cuu-- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----gca aauc-)---- 1261 ---------- ---------- --aag----- u-cgGGGaGC |--------- gGGCAUCA-- 1321 -GGCACAC-- -----(cuag ccaucgugg- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (acca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-GU UGACAUUAAG C-AAUAGGC( ---------- ----GCAA)G CUUGA-CUU| 1561 A|-GUCA-U- GG-CAA---- ---------- ---------- (-cauccagc caa------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GAC-CCA-- 1981 AGUUA-ACAG U--------a gaCGGC|GUA AAGGGUGGc- -acuug---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----cagua -ucccccaaa -cuagg--gu -----|GAAA ACACAA-CCA ----AGCC(G 2341 UCAUA)AGC| UUA------G GGUG-UACCU AAA------- -----gccac -cac(-uaaa 2401 -)gu|g---- ----acccua gcacgcacua cgaug----- gacaaacuCC ACGAA-AGCC 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CAUAAA-UCC 2521 C--GAUG-UC |CA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ------cuau cac(ccac)c a---G-GACA 2701 U-C|--C|GC C-AGAG-CAC UACGAGC(-- -ACAAAC)GU UUG--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-UC CACCUAGA|G GAGCCUGU-C |CUGUA--AU CG(ACAACCC 2821 A--------- ----)CGAUA C-ACCCGACC ACCCCUAGC- ---------- ---------- 2881 (---a---cg aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CU CAC-|CUC(- --cua)GAG- -----(agu- 3181 ucu)-----U C-AGUGAGCG CAA-GAUU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---gaaccc- 3781 ---------A CUAAUA-AGA C-AGGUCGAG G|UAUA|GCU CAU------- ---------G 3841 G-G-GC-GG- -A-AGA--GA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AGaauc 4021 ua-------- ------ACGG --ACGGG-GG C-G(------ ---------- ---------- 4081 ---------- ---------- ugaaa---u) C-AC-C--CC -C--UAAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GAGUAG(c cucau-aaa- --)ACUACCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAA--GGCC 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gcaagcu--- 4381 accgu-cacc cuauaacuaa uggguuaaca ------agcu a--------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)G-U-GC- ACUUUGCAUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.flamm 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Asio flammeus.; . ACCESSION U83758 KEYWORDS . SOURCE Mitochondrion Asio flammeus. ORGANISM Mitochondrion Asio flammeus. REFERENCE 1 (bases 1 to 978) AUTHORS Knight,A., Sawchuk,S.J. and Yuri,T. Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., TITLE orders based on mitochondrial DNA Phylogenetic relationships among and within select avian JOURNAL SYSTEMATICS: 211-245; Academic Press (1997) (in) Mindell,D.F. (Ed.) ; AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 978) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83758 BASE COUNT 295 a 291 c 206 g 186 t 4235 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC C|AACCU-UA CCG-UUAAUU -C-UUAC-CA |GA-CA--CA -UAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GUAAA---UG C|CCC-ucc- a-cc-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----ac cuua-)---- 1261 ---------- ---------- --gg--ggc- a-gaGGGAGC |--------- aGGCAUCA-- 1321 -GGCACAC-- -----(cccc uccacc---- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (aucu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-GU UAACAUUAAG C-AAUGAGC( ---------- ----GCAA)G CUCGA-CUU| 1561 A|-GUCA-U- GG-UAA---- ---------- ---------- (-caccca-- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AAUUU-ACCG U-------ca caCGGC|GUA AAGAGUGGa- -gucau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-cua -ucc-acaaa acuagg--gu -----|UAAA AUGCAA-CCA ----AGCU(G 2341 UCAUA)AGC| CCA------A GAUG-CACuA AAA------- -----accac -cac(-caaa 2401 -)gc|g---- ----acccua gccugacacg gauaa----- acauucccCC ACGAA-AGCC 2461 U-GGA---CU CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCA-GGC- CCUAAA-UCC 2521 C--AAUG-CU |CC|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -uu(ucac)c a---G-AGCA 2701 U-U|--C|GC C-AGGG-UAC UACGAGC(-- -ACAAAC)GU UUA--AAACC CUAAGGAC-U 2761 UG|GCGGUA- CCCCAAA-CC CACCUAGA|G GAGCUUGU-C |CUGUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCAACC ACCCCUUGCC ---------- ---------- 2881 (-------aa -a-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CU-(u --u-u)GAG- -----(agc- 3181 aca)-----A U-AGUGGACA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -ccaaaucu- 3781 ---------G CUAAAA-AGA C-AGGUCAAG G|UAUA|GCU UAU------- ---------G 3841 G-G-GU-GG- -G-AGA--GA -UGGGCUACA UU--CUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-gc ac---)---- ---------- ---------- CAG-AGaauc 4021 cc-------- ------ACGG --AAGAG-AG C-A(------ ---------- ---------- 4081 ---------- ---------- ugaaacacc) U-GC-C--CU -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GAUGGG(g ucaua-gu-- --)ACCCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GAU--GGCC 4261 CUGGGG-UA- CGUACAUA-C -CGCCCGUCA G-GGU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gcaagcu--- 4381 -uuuu-cccc cuauaaauaa uaccccuc-c g-----agcu a--------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAG AAGGUAAG-U GUA-CC(GGA 4621 -A)G-U-GC- ACUUAGCAUA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.virgi 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Bubo virginianus.; . ACCESSION U83757 KEYWORDS . SOURCE Mitochondrion Bubo virginianus. ORGANISM Mitochondrion Bubo virginianus. REFERENCE 1 (bases 1 to 981) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 981) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83757 BASE COUNT 304 a 312 c 197 g 168 t 4232 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC C|AACCU-UA CUG-UUAAUU -C-UUGC-CA |AA-CA--CA -UAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCGCCCCAGU GUAAA---UG C|CCC-ucu- acc--cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----u-g cccc-)---- 1261 ---------- ---------- --gg--acg- --gaGGGAGC |--------- aGGCAUCA-- 1321 -GGCACAC-- -----(ccac ccuc------ ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (acua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAca---C-U 1501 GCA|GUA-GU UAACAUUAAG C-AAUAAGC( ---------- ----GUAA)G CUUGA-CUU| 1561 A|-GUUA-C- GG-CAA---- ---------- ---------- (-uccccucc cca------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AAUUA-ACCG U--------a caCGGC|GUA AAGCGUGG-- -gacca---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----aaaua -ucc-ccuaa acuagg--au -----|UAAA AUGCAA-CUA ----AGCC(G 2341 UCAAA)AGC| UAA------G GAUG-UACUA AAA------- -----accac -ccu(-uaaa 2401 -)ac|g---- ----auccua gccucgccag gacag----- acuaccccCC ACGAA-AGCC 2461 A-GGA---CU CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-GGC- CCUAAA-UCC 2521 A--GAUG-CC |CA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- cag(ucac)u a---A-AGCA 2701 U-C|--C|GC C-AGGG-UAC UACGAGC(-- -ACAAAC)GU UUA--AAACC CUAAGGAC-U 2761 UG|GCGGUG- CCC-AAA-CC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGUUA C-ACCCUACC ACUCCUUGCC ---------- ---------- 2881 (-------ag g--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(- --u-u)GAG- -----(agu- 3181 aca)-----A C-AGUGGGCA UAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -cuaaaccc- 3781 ---------G CUAAAA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 A-A-GU-GG- -C-AGA--GA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aa---)---- ---------- ---------- CAG-AGcaac 4021 cc-------- ------ACGG --AAGAA-GG U-G(------ ---------- ---------- 4081 ---------- ---------- cgaaa--ga) C-AC-C--CU -C--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GACGCA(g ccaua-ac-- --)AUCCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GGC--GGCC 4261 AUGGAG-CA- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcc-ac 4381 aaccu-gccu acaacauca- uaccaccacc uua---ggcc a--------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AACUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)G-U-GC- ACUUAGCAUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.whitn 5213 bp RNA RNA 02-JAN-1999 DEFINITION Mitochondrion Micrathene whitneyi.; . ACCESSION U89229 KEYWORDS . SOURCE Mitochondrion Micrathene whitneyi. ORGANISM Mitochondrion Micrathene whitneyi. REFERENCE 1 (bases 1 to 937) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 937) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (11-FEB-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89229 BASE COUNT 298 a 295 c 172 g 172 t 4276 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---acAGACU 661 (UAG-)U-CC C|AACCU-UA CCG-UUAAUU -C-UUGC-UA |GG-CA--CA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCACCCCAGU GAGAA---UG C|CCU-ccgc c-cu-au--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-caauua uca--)---- 1261 ---------- ---------- --au--agcu g--gAGGAGC |--------- aGGUAUCA-- 1321 -GGCACAC-- -----(ccuu cccccc---- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|ACCUU-GC --|------- (-acua-)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcc---C-A 1501 GCA|GUA-GU UAACCUUAAG C-AAUGAGU( ---------- ----GCAA)A CUCGA-CUU| 1561 A|-GCCA-U- AG-CAA---- ---------- ---------- (-ccccuaa- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGG|--- -AGC-CCA-- 1981 AAUUA-ACCG U--------a uaCGGC|GUA AAGAGUGG-- -gaccaua-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------auuu -auccuuuaa -cuaga--gc -----|UAAG AUAUAA-CCA ----AGCC(G 2341 UCAUA)AGC| CCA------U GAGA-UA-au aaa------- -----aaccc ccau(-uaac 2401 -)au|g---- ----acucua gaaucccc-g auaca----a caa-ccccCC ACGAA-AGCC 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 C--GAUG-CU |CU|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- cca(uaac)u a---G-AGCA 2701 U-C|--C|GC C-AGAA-uAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCAACC GCCUCUUGCC ---------- ---------- 2881 (---aaa--- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC UUA-CA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-UC CAC-|CUC(C --AU-)GAG- -----(agc- 3181 cca)-----A C-AGUGGUCA CAA-UAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---caccaac 3781 cc-------A CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 A-G-GC-GG- -A-AGA--GA -UGGGCUACA CU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AGaacc 4021 cu-------- ------ACGG --ACGGG-AC C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) A-AC-C--CC -C--UAAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GAUGGA(c ucaua-aa-- --)ACCACCU U-uaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AAA--GGCC 4261 CUGGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcuac- 4381 ccuuc-ccaa uaacuaauac -----cacca ---ccagcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.gurne 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Mimizuku gurneyi.; . ACCESSION U83756 KEYWORDS . SOURCE Mitochondrion Mimizuku gurneyi. ORGANISM Mitochondrion Mimizuku gurneyi. REFERENCE 1 (bases 1 to 979) AUTHORS Miranda,H.C. Jr., Kennedy,R.S. and Mindell,D.P. TITLE Strigidae) inferred from mitochondrial sequences The phylogenetic placement of Mimizuku gurneyi (Aves: JOURNAL Auk (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 979) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83756 BASE COUNT 318 a 304 c 196 g 161 t 4234 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC C|AACCU-UA CAG-UUAGUU -C-CUGC-UA |AA-CA--CA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GUAAA---UG C|CCC--uca -cug-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----ca ccaca)---- 1261 ---------- ---------- --ga--caa- --gaAGGAGC |--------- aGGUAUCA-- 1321 -GGCACAC-- -----(cugc cgua------ ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|ACCUU-GC --|------- (acca--)-- -------GC| 1441 CAAA------ ---------- ---------- -|-CCCC--( CAAG-)--GG UAcu---C-A 1501 GCA|GUA-GU UAACAUUAGG C-AAUGACC( ---------- ----GAAA)G CUCGA-CCU| 1561 A|-GUUA-U- AG-CAC---- ---------- ---------- (-cucccacc a--------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GUU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AACUA-ACCG U--------a caCGGC|GUA AAGAGUGG-- -a-acca--- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ----aaacau -cucugauca acuaag--gc -----|UAAA AUACCGaCCA ----AGCU(G 2341 UCAUA)AGC| CCA------C GACG-UACUA AAA------- -----accac -cau(-aaaa 2401 -)au|g---- ----gcccua ggaccc--ca gaua------ gacaacuuCC ACGAA-AGCC 2461 A-GGA---cu CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCC 2521 U--GAUG-CU |CA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ --------cc cau(caac)c a---G-AGCA 2701 C-C|--C|GC C-AGGG-GAC UACGAGC(-- -ACAAAC)GC UUA--AAACC CUAAGGAC-U 2761 UG|GCGGUG- CCC-AAA-CC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUACCCC 2821 A--------- ----)CGAUA C-ACCCGACC AUCUCUUGCC ---------- ---------- 2881 (-------aa -a-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CUC(- --u-u)GAG- -----(agc- 3181 aca)-----A C-AGUGAGCC UAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -cuccaccc- 3781 ---------G CUAAAA-AGA C-AGGUCAAG G|UAUA|GCU CAU------- ---------G 3841 A-G-AU-GG- -A-AGA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ac ag---)---- ---------- ---------- UAG-GAaacu 4021 c--------- ------ACAA --AAGGG-GG C-A(------ ---------- ---------- 4081 ---------- ---------- ugaaa--a-) U-GC-C--CC -C--CGAAG- -GCGGAUUUA 4141 G-A--AGUAA A-GACGAG(a ccaua-aa-- --)GCUCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCC 4261 CCGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gcaagcc--- 4381 -acaa-ccca acagaacaua uacugccaca ca----ggcu a--------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GACG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUAGCACA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.N.phili 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Ninox philippensis.; . ACCESSION U83760 KEYWORDS . SOURCE Mitochondrion Ninox philippensis. ORGANISM Mitochondrion Ninox philippensis. REFERENCE 1 (bases 1 to 973) AUTHORS Knight,A., Sawchuk,S.J. and Yuri,T. Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., TITLE orders based on mitochondrial DNA Phylogenetic relationships among and within select avian JOURNAL SYSTEMATICS: 211-245; Academic Press (1997) (in) Mindell,D.F. (Ed.) ; AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 973) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83760 BASE COUNT 307 a 298 c 200 g 168 t 4240 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---agAGACU 661 (UAG-)U-CC C|AACCU-UA CCG-UUAGUU -C-UUGC-CA |GA-CA--CA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GUAAA--cAC C|CCU-caa- -c-c-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cacac u----)---- 1261 ---------- ---------- --ag--gc-- a-gaGGGaGU |--------- aGGUAUCA-- 1321 -GGCACAC-- -----(ccac caguc----- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-acca-)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG CAuu---C-A 1501 GCA|GUA-GU UAACAUUAAG C-AAUAAGC( ---------- ----GUAA)G -UUGA-CUU| 1561 A|-GUUA-U- GG-CAA---- ---------- ---------- (-cccacuau a--------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GGC-CCA-- 1981 AAUUA-ACCG U--------c caCGGC|GUA AAGAGUGG-- -cccca---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----uaaua -uc-ucguag acuggg--gu -----|UAAA AUGCAA-CUA ----GGCU(G 2341 UCAUA)AGC| UAA------A GAUG-CACCU AAA------- --------cc -ccc(-uaaa 2401 -)aa|u---- ----acccca gccacc--aa ga-aac---- acaaaaccCC ACGAA-AGCU 2461 A-GGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-AGC- CCUAAA-UUC 2521 C--GAUG-UU |CG|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ --------uc cua(ucac)c a---G-AACA 2701 U-C|--C|GC C-AGAG-CAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-C |CUGUA--AU CG(ACAACCC 2821 A--------- ----)CGAUA G-ACCCAACC AUCUCUUGCA ---------- ---------- 2881 (-------aa -a-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC AC-CA|G-CU CGC-|CUC(- --c-u)GAG- -----(aga- 3181 gca)-----A C-AGCGUGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- cacagcauc- 3781 ---------G CUAGCA-GGA C-AGGUCAAG G|UAUA|GCG UAU------- ---------G 3841 A-G-AU-GG- -A-AGA--GA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AGaacc 4021 a--------- ------ACGA --AAGGG-GA C-C(------ ---------- ---------- 4081 ---------- ---------- ugaaa----) c-AC-C--CC -C--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GGCGGG(a ucauucaa-- --)GCCCCCU U-uaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AAA--GGCU 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gcaagcu--- 4381 -acca-ccac ccauaacuaa ucacccacc- ca---agcua ac-------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------a GACG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)G-U-GU- ACUUAGCAUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.N.scand 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Nyctea scandiaca.; . ACCESSION U83750 KEYWORDS . SOURCE Mitochondrion Nyctea scandiaca. ORGANISM Mitochondrion Nyctea scandiaca. REFERENCE 1 (bases 1 to 974) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 974) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83750 BASE COUNT 297 a 308 c 204 g 160 t 4244 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---agAGACU 661 (UAG-)U-CC C|AACCU-UA CCG-UUNAUU -C-UUGC-CA |AA-CA--CA -UAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCGCCCCAGU GUAAA---UG C|CCC-ucu- --ac-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cgc-- -----)---- 1261 ---------- ---------- --cc--aau- a-gaAGGaGC |--------- aGGCAUCA-- 1321 -GGCACAC-- -----(ccau nccnnc---- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (acua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAua---C-A 1501 GCA|GUA-GU UAACAUUAAG C-AAUAAGC( ---------- ----GCAA)G CUUGA-CUU| 1561 A|-GUUA-U- GG-CAA---- ---------- ---------- (cuuccccca ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GGC-CCA-- 1981 AAUUA-ACCG U--------a caCGGC|GUA AAGAGUGGg- --acca---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----aaaua -ucc-cccaa acuagg--au -----|UGAA AUGCAA-CCG ----AGCC(G 2341 UCAUA)AGC| CAA------G GAUG-CACUA AAA------- -----aucac -ccu(-uaaa 2401 -)ac|g---- ----auccua gcccugc-cc gg-aca---g acuaccccCC ACGAA-AGCC 2461 A-GGA---CU CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-GGC- CCUAAA-UCA 2521 A--GAUG-CU |CG|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- ugg(ccgc)u a---G-AGCA 2701 U-U|--C|GC C-AGGG-uAC UACGAGC(-- -ACAAAC)GC UUA--AAACC CUAAGGAC-U 2761 UG|GCGGUN- CCC-AAA-CC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCCACC ACUCCUUGCC ---------- ---------- 2881 (--------a gg-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(- --u-u)GAG- -----(agc- 3181 aca)-----A C-AGUGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --cccaacc- 3781 ---------G CUAAAA-AGA C-AGGUCAAG G|UAUA|GCC -AC------- ---------G 3841 A-A-GU--G- -A-AGA--GA -UGGGCUACA UU--CUCUG- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aa---)---- ---------- ---------- CAG-AGaacc 4021 c--------- ------ACGG --AAGAG-GG U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAgccc) C-AC-C--CU -C--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GACGGG(g ccaua-au-- --)ACCCUCU U-uaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GGC--GGCC 4261 AUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcc--- 4381 acaac-uuau ccaa-aacua uacc-accac cua--ggcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGCAUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.O.longi 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Otus longicornis.; . ACCESSION U83751 KEYWORDS . SOURCE Mitochondrion Otus longicornis. ORGANISM Mitochondrion Otus longicornis. REFERENCE 1 (bases 1 to 987) AUTHORS Knight,A., Sawchuk,S.J. and Yuri,T. Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., TITLE orders based on mitochondrial DNA Phylogenetic relationships among and within select avian JOURNAL SYSTEMATICS: 211-245; Academic Press (1997) (in) Mindell,D.F. (Ed.) ; AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 987) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83751 BASE COUNT 323 a 300 c 194 g 170 t 4226 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---agAGACU 661 (UAG-)U-CC C|AACCU-UA CAG-UUAGUU -C-UUGC-UA |GA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GUAAA---UG C|CCC-ucc- -cug-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-uacuca aacu-)---- 1261 ---------- ---------- --ga--caa- g-uaGGGAGC |--------- gGGUAUCA-- 1321 -GGCACAC-- -----(acca ca-------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|ACCUU-GC --|------- (accc--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG UAcu---C-A 1501 GCA|GUA-AU UAACAUUAGG C-AAUGAAC( ---------- ----GAAA)G CUCGA-CUU| 1561 A|-GUCA-U- AG-CAA---- ---------- ---------- (-cacccacc a--------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC|-GUU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AACUA-ACCG U--------a caCGGC|GUA AAGAGUGG-- -aacca---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ----caauau cucuuaacca acuaag--gc -----|UAAA AUAUAA-CCA ----AGCC(G 2341 UCAUA)AGC| CCA------C GAUA-UACUA AAA------- -----accac -cau(-caaa 2401 -)au|g---- ----accuua gagaccccca gauga----- acagacccCC ACGAA-AGCC 2461 A-GGA---CU CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCC 2521 U--GAUG-UU |CA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------a cua(cuac)a a---G-AACA 2701 U-C|--C|GC C-AGGG-AAC UACGAGC(-- -ACAAAC)GU UUA--AAACC CUAAGGAC-U 2761 UG|GCGGUG- CCC-AAA-UC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCGACC AUCUCUUGCC ---------- ---------- 2881 (-------ag -a-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC UAC-|CUC(- --u-u)GAG- -----(agu- 3181 aua)-----A C-AGUGGGCA CAG-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -cucaaccc- 3781 ---------G CUAAAA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 A-G-AU-GG- -U-AGA--GA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ac ag---)---- ---------- ---------- UAG-AGaacc 4021 uac------- ------ACGA --AAGGG-AG C-A(------ ---------- ---------- 4081 ---------- ---------- ugaaa--A-) U-GC-C--CC -C--AGAAG- -GGGGAUUUA 4141 G-A--AGUAA A-GAAGGG(a ccaug-aa-- --)GCCCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUC--GGCC 4261 CUGGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< auaagcc--- 4381 -acaa-cccc cacaaaaccu augcccaccc cacccaagcu ag-------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------a GACG-AGG-U AAGUCGUAAC AAGGUAAG-C GUA-CC(GGA 4621 -A)G-U-AC- G-UUAGCAUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.O.m.eve 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Otus megalotis everetti.; . ACCESSION U83754 KEYWORDS . SOURCE Mitochondrion Otus megalotis everetti. ORGANISM Mitochondrion Otus megalotis everetti. REFERENCE 1 (bases 1 to 984) AUTHORS Knight,A., Sawchuk,S.J. and Yuri,T. Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., TITLE orders based on mitochondrial DNA Phylogenetic relationships among and within select avian JOURNAL SYSTEMATICS: 211-245; Academic Press (1997) (in) Mindell,D.F. (Ed.) ; AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 984) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83754 BASE COUNT 315 a 301 c 201 g 167 t 4229 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC C|AACCU-UA CAG-UUAGUU -C-UUGC-UA |AA-CA--CA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GUAAA---UG C|CCC--uca -cug-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-----ca ccgcg)---- 1261 ---------- ---------- --ga--caa- --gaAGGAGC |--------- aGGUAUCA-- 1321 -GGCACAC-- -----(cuac cgua------ ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|ACCUU-GC --|------- (acca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG UAcu---C-A 1501 GGA|GUA-GU UAACAUUAAG C-AAGGAGC( ---------- ----GGAA)G CUCGA-CUU| 1561 A|-GUUA-U- AG-CAC---- ---------- ---------- (-uucccacc a--------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GUU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AACUA-ACCG U--------a caCGGC|GUA AAGAGUGG-- -a-acca--- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ----aaacau -cucugauca acuaag--gc -----|UAAA AUAUCGaCCA ----AGCU(G 2341 UCAUA)AGC| CCA------C GACG-UACUA AAA------- -----accgc -cau(-aaaa 2401 -)au|g---- ----acccua ggaccc--ca gaca------ gacaacuuCC ACGAA-AGCC 2461 A-GGA---cu CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCC 2521 U--GAUG-CU |CA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------c cca(ucac)c a---G-AGCA 2701 C-C|--C|GC C-AGGG-CAC UACGAGC(-- -ACAAAC)GC UUA--AAACC CUAAGGAC-U 2761 UG|GCGGUG- CCC-AAA-UC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCGACC AUCUUUUGCC ---------- ---------- 2881 (-------ag -a-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUC(- --u-u)GAG- -----(agu- 3181 aua)-----A C-AGUGGGCA UAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -cucaaccc- 3781 ---------G CUAAAA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 A-G-AU-GG- -C-AGA--GA -UGGGCUACA UU--gagau- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ug ug---)---- ---------- ---------- UAG-AGaacc 4021 uac------- ------ACGA --AAGGG-AG C-A(------ ---------- ---------- 4081 ---------- ---------- ugaaa--C-) U-GC-C--CC -C--AGAAG- -GCGGAUUUA 4141 G-A--AGUAA A-GACGAG(a ccaua-aa-- --)GCCCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUC--GGCC 4261 CUGGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcc--- 4381 -acaa-cccc cauaaaaccu auacccaccc cacccaagcu ag-------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------a GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- GCUUAGCAUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.O.m.nig 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Otus megalotis nigrorum.; . ACCESSION U83755 KEYWORDS . SOURCE Mitochondrion Otus megalotis nigrorum. ORGANISM Mitochondrion Otus megalotis nigrorum. REFERENCE 1 (bases 1 to 978) AUTHORS Knight,A., Sawchuk,S.J. and Yuri,T. Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., TITLE orders based on mitochondrial DNA Phylogenetic relationships among and within select avian JOURNAL SYSTEMATICS: 211-245; Academic Press (1997) (in) Mindell,D.F. (Ed.) ; AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 978) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83755 BASE COUNT 322 a 300 c 194 g 162 t 4235 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC C|AACCU-UA CAG-UUAGUU -C-CUGC-UA |AA-CA--CA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GUAAA---UG C|CCC--uca -cug-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------a acca-)---- 1261 ---------- ---------- --ga--caa- --gaAGGAGC |--------- aGGUAUCA-- 1321 -GGCACAC-- -----(ccac cgua------ ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|ACCUU-GC --|------- (acca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG UAcu---C-A 1501 GCA|GUA-GU UAACAUUAAG C-AAUGAGC( ---------- ----GAAA)G CUCGA-CUU| 1561 A|-GUUA-U- AG-CAC---- ---------- ---------- (-cucccacc a--------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GUU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AACUA-ACCG U--------a caCGGC|GUA AAGAGUGG-- -a-acca--- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ----aaacau -cucugauca acuaag--gc -----|UAAA AUAUCGaCCA ----AGCU(G 2341 UCAUA)AGC| CCA------C GACG-UACUA AAA------- -----accgc -cau(-aaaa 2401 -)au|g---- ----acccua gaaccc--ca gaca------ gacaacuuCC ACGAA-AGCC 2461 A-GGA---CU CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCC 2521 U--GAUG-CU |CA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------c cca(ccac)c a---G-AGCA 2701 C-C|--C|GC C-AGGG-GAC UACGAGC(-- -ACAAAC)GC UUA--AAACC CUAAGGAC-U 2761 UG|GCGGUG- CCC-AAA-UC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCGACC AUCUCUUGCC ---------- ---------- 2881 (-------ag -a-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC AC-CA|G-CC CAC-|CUC(- --u-u)GAG- -----(ggu- 3181 aua)-----A C-AGUGGCCA CAA-CAAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -cucaaccc- 3781 ---------G CUAAAA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 A-G-AU-GG- -C-AGA--GA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ac aa---)---- ---------- ---------- UAG-AGgacc 4021 cac------- ------ACGA --AAGGG-AG C-A(------ ---------- ---------- 4081 ---------- ---------- ugaaa--G-) U-GC-C--CC -C--AGAAG- -GCGGAUUUA 4141 G-A--AGUAA A-GACGAG(a ccaua-aa-- --)GCCCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCC 4261 UUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcc--- 4381 -acaa-ccca acagaacaua uacugucaca ua----ggcu a--------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GACG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUAGCAUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.O.mindo 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Otus mindorensis.; . ACCESSION U83753 KEYWORDS . SOURCE Mitochondrion Otus mindorensis. ORGANISM Mitochondrion Otus mindorensis. REFERENCE 1 (bases 1 to 980) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 980) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83753 BASE COUNT 327 a 297 c 186 g 170 t 4233 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---agAGACU 661 (UAG-)U-CC C|AACCU-UA CAG-UUAGUU -C-UUGC-UA |GA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GUAAA---UG C|CCC-uccc --cg-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-cacuca aacc-)---- 1261 ---------- ---------- --ga--caa- g-uaGGCaGC |--------- cGGUAUCA-- 1321 -GGCACAC-- -----(acca ua-------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|ACCUU-CA --|------- (uccg--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG UAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAAC( ---------- ----GAAA)G CUUGA-CUU| 1561 A|-GUUA-U- AG-CAA---- ---------- ---------- (-uccgcacc a--------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUG|-GUU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AACUA-ACCG U--------a caCGGC|GUA AAGAGUGG-- -a-acca--- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ----ccacau cucucaacca acuaag--gc -----|UAAA AUAUAA-CCA ----AGCC(G 2341 UCAUA)AGC| CCA------C GAUA-UACUA AAA------- -----accac -cau(-caaa 2401 -)ac|g---- ----accuua gaagccccua gaug------ aacaaaucCC ACGAA-AGCC 2461 A-GGA---CU CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCC 2521 U--GAUG-UU |CA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------a cua(cuac)a a---G-AACA 2701 U-C|--C|GC C-AGGG-AAC UACGAGC(-- -GUAAAC)GU UUA--AAACC UUAAGGAC-U 2761 UG|GCGGUG- CCC-AAA-CC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCGACC AUCUCUUGCC ---------- ---------- 2881 (-------aa -a-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CUC(- --u-u)GAG- -----(agc- 3181 aca)-----A C-AGUGAGCC UAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -ccccaccc- 3781 ---------G CUAAAA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 A-G-AU-GG- -A-AGA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ac aa---)---- ---------- ---------- UAG-GAaacc 4021 c--------- ------ACAA --AAGGG-GA C-A(------ ---------- ---------- 4081 ---------- ---------- ugaaa----) A-UC-C--CC -C--AGAAG- -GCGGAUUUA 4141 G-A--AGUAA A-GACGAG(a ccaua-aa-- --)GCUCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCC 4261 C-CGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gcaagcc--- 4381 -acaa-ccca acagaacaua uacugucaca ca----ggcu a--------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GACG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUAGCACA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.O.mirus 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Otus mirus.; . ACCESSION U83752 KEYWORDS . SOURCE Mitochondrion Otus mirus. ORGANISM Mitochondrion Otus mirus. REFERENCE 1 (bases 1 to 981) AUTHORS Knight,A., Sawchuk,S.J. and Yuri,T. Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., TITLE orders based on mitochondrial DNA Phylogenetic relationships among and within select avian JOURNAL SYSTEMATICS: 211-245; Academic Press (1997) (in) Mindell,D.F. (Ed.) ; AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 981) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83752 BASE COUNT 328 a 297 c 187 g 169 t 4232 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---agAGACU 661 (UAG-)U-CC C|AACCU-UA CAG-UUAGUU -C-UUGC-UA |GA-UA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GUAAA---UG C|CCC-uccc --cg-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-uaccca aacu-)---- 1261 ---------- ---------- --ga--caa- -guaGGGaGC |--------- cGGUAUCA-- 1321 -GGCACAC-- -----(acca ca-------- ---------- ---------- ------)--- 1381 ---GU|---A GCCGA--AGA C|ACCUU-GC --|------- (accc--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG UAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUGAAC( ---------- ----GAAA)G CUUGA-CUU| 1561 A|-GUUA-U- AG-CAA---- ---------- ---------- (-uacgcacc a--------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC|-GUU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AACUA-ACCG U--------a caCGGC|GUA AAGAGUGG-- -aacca---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ----ccacau cucucaacca acuaag--gc -----|UAAA AUAUAA-CCA ----AGCC(G 2341 UCAUA)AGC| CCA------C GAUA-UACUA AAA------- -----accac -cau(-caaa 2401 -)ac|g---- ----accuua ggaaccccca gaug------ aauaaaccCC ACGAA-AGCC 2461 A-GGA---CU CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCC 2521 U--GAUG-UU |CA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------a cua(ccac)a a---G-AACA 2701 U-C|--C|GC C-AGGG-AAC UACGAGC(-- -GCAAAC)GC UUA--AAACC CUAAGGAC-U 2761 UG|GCGGUG- CCC-AAA-CC CACCUAGA|G GAGCAUGU-C |CUAUA--AU CG(AUAACCC 2821 A--------- ----)UGAUA C-ACCCGACC AUCUCUUGCC ---------- ---------- 2881 (-------aa -a-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GU-CA|G-CC CAC-|CUC(- --u-u)GAG- -----(agc- 3181 aca)-----A C-AGUGAGCC UAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -cuccaccc- 3781 ---------G CUAAAA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 A-G-AU-GG- -A-AGA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ac aa---)---- ---------- ---------- UAG-GAaacc 4021 c--------- ------ACAA --AAGGG-GA C-A(------ ---------- ---------- 4081 ---------- ---------- ugaaa--c-) U-AC-C--CC -C--CGAAG- -GCGGAUUUA 4141 G-A--AGUAA A-GACGAG(a ccaua-aa-- --)GCCCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCC 4261 CU-GGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcc--- 4381 -acaa-ccca acagaacaua uacugucaca ua----ggcu a--------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GACG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUAGCAUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.alba 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Tyto alba.; . ACCESSION U83749 KEYWORDS . SOURCE Mitochondrion Tyto alba. ORGANISM Mitochondrion Tyto alba. REFERENCE 1 (bases 1 to 966) AUTHORS Knight,A., Sawchuk,S.J. and Yuri,T. Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., TITLE orders based on mitochondrial DNA Phylogenetic relationships among and within select avian JOURNAL SYSTEMATICS: 211-245; Academic Press (1997) (in) Mindell,D.F. (Ed.) ; AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 966) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83749 BASE COUNT 304 a 294 c 196 g 172 t 4247 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|GACCU-UA CCG-UUAGUU -C-UUGC-CA |AG-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GUAAA---UG C|CCU--aac -ccu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----u-- aau-a)---- 1261 ---------- ---------- --ag--aag- a--cAGGAGC |--------- aGGCAUCA-- 1321 -GGCACAC-- -----(ccac gaa------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AAA C|GCCUU-GC --|------- (-cca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGC( ---------- ----GCAA)G -UUGA-CUU| 1561 A|-GCUA-U- GG-CAA---- ---------- ---------- (-caccua-- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AACUA-ACUG U--------c caCGGC|GUA AAGAGUGG-- -caccc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----c-acu aucccguaa- -cuagg--cu -----|CAAA AUGUAA-CUA ----AGCC(G 2341 UCAUA)AGC| CCA------A GAUA-CACCA AAG------- -----cccac -ccu(-aaag 2401 -)au|g---- ----acccua gaacacac-- gaucg----- acugcaccCC ACGAA-AGCC 2461 A-GGG---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCC 2521 U--GAUG-UU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- uaa(uaac)c a---A-AACA 2701 U-C|--C|GC C-CGGG-UAC UACGAGC(-- -ACAAAC)GA UUA--AAACC CUAAGGAC-U 2761 UG|GCGGUG- CCC-AAA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUACCCC 2821 A--------- ----)CGAUA C-ACCCGACC ACCCCUUGCC ---------- ---------- 2881 (--aa---aa au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-UC CAC-|CUC(C --CAU)GAA- -----(agu- 3181 ccc)-----A C-AGUGGGCA CAA-CAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --caacuuc- 3781 ---------A CUAGAA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ca---)---- ---------- ---------- UAG-Acaagc 4021 u--------- ------ACGG --AAGGG-GG C-G(------ ---------- ---------- 4081 ---------- ---------- ugaaa--uc) C-AC-C--CC -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GUGGGA(- caaua-aa-- --)ACCCCCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCU--GGCC 4261 -UGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcc--- 4381 -acau-aguc cucauaccua aaacauccac c-----ggcc g--------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)G-U-GC- ACUUAGCACA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.tzaca 5213 bp RNA RNA 02-JAN-1999 DEFINITION Mitochondrion Amazilia tzacatl.; . ACCESSION U89206 KEYWORDS . SOURCE Mitochondrion Amazilia tzacatl. ORGANISM Mitochondrion Amazilia tzacatl. REFERENCE 1 (bases 1 to 927) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 927) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (11-FEB-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89206 BASE COUNT 312 a 259 c 174 g 182 t 4286 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAU-)U-CC U|AACCU-UA CCG-UUGAUU -A-UUGC-CA |AA-CA--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCACCCCAAU GUAAA---UG C|CCA-uaga c-ac-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---uacc a----)---- 1261 ---------- ---------- --ag--gca- a--aAGGAGC |--------- aGGUAUCA-- 1321 -GGCACAC-- -----(uaag gcc------- ---------- ---------- ------)--- 1381 ---GU|---a GCCCA--AAA C|ACCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GUUA-U- GG-UAA---- ---------- ---------- (-acccaa-- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCU|-GGU 1921 -UAA-U---C UUGU-G(-CC AGCCGCC-GC -GGC-CA)-U ACAAGA|--- -GAC-CCA-- 1981 AACCA-ACGG C-------aa caCGGC|GUA AAGAGUGA-- -cac-g---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----acaau -auccaccaa guuagg--au -----|UAAA ACACAA-CUG ----AGCC(G 2341 UCAUA)AGC| ACA------A GAUG-UGCAG AAG------- -----aaccc uaua(-aaag 2401 -)aa|u---- ----auccua acuaacau-g accu-----a auu-acugUC ACGAA-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CUUAAA-UCU 2521 U--GACA-CU |U-|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- ccu(agac)c a---A-AGUG 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCUCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGCUA C-ACCCAACC GCUCUUUGCU ---------- ---------- 2881 (---ugcu-- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-UC CAC-|CUA(U --CUU)GAA- -----(aga- 3181 aua)-----A C-AGUGAACA CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cucaacc 3781 ac-------G CUAAAA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 G-A-GC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ac---)---- ---------- ---------- UAG-AAaauu 4021 u--------- ------ACGA --AAGGG-GG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-CC-C--CC -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GUUGGA(- ccaca-ac-- --)GCCAUCU U-aaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCU--GGCC 4261 CCGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< guaagcuac- 4381 caaca-uaag uaacuaacac c----aguuu ---ccagcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAC--AGG-U ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.aureo 5213 bp RNA RNA 02-JAN-1999 DEFINITION Mitochondrion Chlorostilbon aureoventris.; . ACCESSION U89205 KEYWORDS . SOURCE Mitochondrion Chlorostilbon aureoventris. ORGANISM Mitochondrion Chlorostilbon aureoventris. REFERENCE 1 (bases 1 to 926) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 926) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (11-FEB-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89205 BASE COUNT 301 a 269 c 186 g 170 t 4287 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUGAUU -A-UUGC-CG |GA-CA--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCGCCCCAGU GUAAA---UG C|CCU-Uaaa c-ac-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---uacc a----)---- 1261 ---------- ---------- --ag--aca- a--aAGGAGC |--------- aGGUAUCA-- 1321 -GGCACAC-- -----(caac u--------- ---------- ---------- ------)--- 1381 ---GU|---a GCCCA--AGA C|ACCUU-GC --|------- (-ucg--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GCAA)A CUUGA-CUU| 1561 A|-GUUA-C- GG-CAA---- ---------- ---------- (-acuucua- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCU|-GGU 1921 -UAA-U---C UUGU-G(-CC AGCCGCC-GC -GGU-CA)-U ACAAGA|--- -AAC-CCA-- 1981 AACCA-ACGG C-------ag caCGGC|GUA AAGAGUGA-- -cac-g---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----acaau auccacaggg cgggg---gc -----|CGAA ACACAA-CUG ----AGCA(G 2341 UCAUA)AGC| AUA------A GAUG-UGUAG AAg------- -----aacuc -caa(-gaaa 2401 -)gu|u---- ----aagccc cagccaag-c acgaccu--a auu-acugUC ACGAA-AGCC 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-GGC- CUUAAA-UCU 2521 U--GACA-CU |U-|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- ccc(caac)u a---A-AGUG 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 G--------- ----)CGCUA C-ACCCGACC GCUCUUUGCC ---------- ---------- 2881 (---cacu-- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-UC CAC-|CUA(U --CCU)GAG- -----(aga- 3181 aca)-----A C-AGUGGGCA UAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ccuaacc 3781 ac-------G CUAAAA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------A 3841 G-A-GC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a cc---)---- ---------- ---------- UAG-AAaacu 4021 ---------- ------ACGA --AAGGG-GA C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-UC-C--CC -C--AAAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GUUGGA(- ccaca-au-- --)GCCACCU U-aaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACU--GGCC 4261 CCGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcuau- 4381 uaaca-caag uaacuaacau -----caucu ---cuagcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.narin 5213 bp RNA RNA 26-AUG-1998 DEFINITION Mitochondrion Apaloderma narina.; . ACCESSION U94812 KEYWORDS . SOURCE Mitochondrion Apaloderma narina. ORGANISM Mitochondrion Apaloderma narina. REFERENCE 1 (bases 1 to 969) AUTHORS Espinosa de los Monteros,A. TITLE Phylogenetic relationships among trogons JOURNAL Auk 115, 937-954 (1998) STANDARD No information REFERENCE 2 (bases 1 to 969) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (21-MAR-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U94812 BASE COUNT 307 a 259 c 195 g 208 t 4244 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUAGUU -A-UAGC-CA |GA-ua--ca -uAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCACCCCAGU GUAAA---UG C|CC--uuag --gc-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(uuauacu cauuu)---- 1261 ---------- ---------- --aa--gau- --aaAGGAGC |--------- gGACAUCA-- 1321 -GGCACGC-- -----(--cc c--------- ---------- ---------- ------)--- 1381 ---GC|---A GCCCA--AGA C|GUCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG Uacu---C-A 1501 GCA|GUA-GU UAACAUUAAG C-AAUGAGU( ---------- ----GAAA)A CUUGA-CUU| 1561 A|-GUCa-U- GG-UUA---- ---------- ---------- (--ucccua- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-G ACAAGA|--- -GGC-CCA-- 1981 AAUUA-ACUG U-------ca uaCGGC|GUA AAGAGUGGu- -augau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------auua -ucg-aagua acuaag--au -----|CAAA AUUCAG-CUA ----AGCC(G 2341 UCAUA)AGC| UAA------U GAUG-CACCU AAG------- ----acuauc -ucu(-aaag 2401 -)ac|g---- ----aucuua guccauucac gacgaac--- -ua-aacaCC ACGAA-AGCU 2461 A-GGA---CU CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCU 2521 U--GAUGCGC |U-------- ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------a cuc(cuac)c u---A-GCCA 2701 U-C|--C|GC C-UGGG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACC CUAAGGAC-U 2761 UG|GCGGUA- CCUCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUG C-ACCUGACC CCUUCuugc- ---------- ---------- 2881 (-------ca aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC UC-CA|G-CU CGC-|CCU(- c-ccu)GAA- -----(ggu- 3181 gca)-----A C-AGCGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)cu caaacuuuc- 3781 ---------G CUAGUA-AGA C-AGGUCAAG G|UAUA|GCU AAU------- ---------G 3841 A-A-GG-GG- -A-AGA--AA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa -a---)---- ---------- ---------- UAG-AGaaau 4021 cuucuuauua a-----ACGA --AAGGG-GG C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) C-UC-C--CC -C--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AGGAGA(- caaga-aa-- --)GCUCCAU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCU--GGCC 4261 CUGAGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< auaggcu-au 4381 cagau-uaaa cuauaacuaa uucaccacc- -ca--agcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.vitta 5213 bp RNA RNA 14-SEP-1998 DEFINITION Mitochondrion Apaloderma vittatum.; . ACCESSION U89234 KEYWORDS . SOURCE Mitochondrion Apaloderma vittatum. ORGANISM Mitochondrion Apaloderma vittatum. REFERENCE 1 (bases 1 to 951) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level Phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 951) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (01-SEP-1998) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89234 BASE COUNT 304 a 256 c 188 g 203 t 4262 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUAGUU A--UAGC-CA |GA-UA--CA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCACUCCAGU GUAAA---UG C|CC--uuag --ac-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(uuauauu uacuu)---- 1261 ---------- ---------- --aa--gau- --agAGGAGC |--------- aGACAUCA-- 1321 -GGCACGC-- -----(-ccc c--------- ---------- ---------- ------)--- 1381 ---GC|---A GCCCA--AGA C|GUCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-GU UAACAUUAAG C-AAUAAGU( ---------- ----GAAA)A CUUGA-CUU| 1561 A|-GUCA-U- GG-CUA---- ---------- ---------- (--cccuca- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-G ACAAGA|--- -GGC-UCA-- 1981 AAUUA-ACUG U-------ca uaCGGC|GUA AAGAGUGGc- -augaa---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------acua -uca-aagca acuaag--ac -----|CAAA ACUCAA-CUA ----AGCU(G 2341 UCAUA)AGC| UAA------A GAUG-CAUCU AAG------- ----acuacc -ucu(-aaag 2401 -)ac|g---- ----aucuua gcucaaccuc acacgacgga cua-aacgCC ACGAA-AGCU 2461 A-GGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCU 2521 U--GAUGUGC |U-------- ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------a cuc(ccac)c u---A-GCCA 2701 U-C|--C|GC C-UGGG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACC CUAAGGAC-U 2761 UG|GCGGUG- CCUCAAA-UC CACCUAAA|G GAGCCUGU-U |CUGUA--AU CG(AUAACCC 2821 A--------- ----)CGAUG C-ACCuaacc ccuucuugc- ---------- ---------- 2881 (-------ca aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC UC-CA|G-CU CGC-|CCU(- c-ccu)GAA- -----(ggu- 3181 cua)-----A C-AGCGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-c uugaaucauc 3781 ---------G CUAGUA-AGA C-AGGUCAAG G|UAUA|GCU AAU------- ---------G 3841 A-A-GG-GG- -A-AGA--AA -UGGGCUACA UU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa -a---)---- ---------- ---------- UAG-AGaaau 4021 uuuuu----- -auuagACGA --AAGGG-GG C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) C-GC-C--CC -U--uGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AGGAGA(- uaaga-aa-- --)GCUCCAU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCU--GGCC 4261 CUGAGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaggcu-au 4381 caaau-uaga cuauaacuaa uucaccauua a----agcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.E.neoxe 5213 bp RNA RNA 14-SEP-1998 DEFINITION Mitochondrion Euptilotis neoxenus.; . ACCESSION U89236 KEYWORDS . SOURCE Mitochondrion Euptilotis neoxenus. ORGANISM Mitochondrion Euptilotis neoxenus. REFERENCE 1 (bases 1 to 932) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level Phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 932) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (01-SEP-1998) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89236 BASE COUNT 302 a 247 c 177 g 206 t 4281 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUAAUU U--UAGC-UA |GA-CA--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCACGCCAGU GUAAA---UG C|CC--uua- --ac-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--ucccu aaa--)---- 1261 ---------- ---------- --ua--gau- --aaAGGAGC |--------- aGGUAUCA-- 1321 -GGCACGC-- -----(u-cc g--------- ---------- ---------- ------)--- 1381 ---GC|---A GCCCA--AGA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GUCA-U- AG-CUA---- ---------- ---------- (--cuua--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-UA)-C ACAAGA|--- -AGC-CCA-- 1981 AAUUA-ACUG U-------ua caCGGC|GUA AAGAGUGGu- -auaac---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------auua -ucc-agaca acuaag--au -----|UAAA CUGUAA-CUA ----AGCU(G 2341 UCAUA)AGC| UAA------A GAUG-CCUAU AAA------- ----accacc -ucc(-uaaa 2401 -)au|g---- ----aucuua gc-aucc--c ugcgaccu-a uca-gacaCC ACGAA-AGCU 2461 A-GGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-UGC- CCUAAA-UCC 2521 U--GAUGCGC |U-------- ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------a c-c(cuac)u u---A-GUCA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUG--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-AC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(ACAACCC 2821 A--------- ----)CGAUA C-ACCCGACC cccccuugc- ---------- ---------- 2881 (-------ua aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC UC-CA|G-CU CGC-|CCU(u u-aug)AAG- -----(g-c- 3181 cua)-----A C-AGCGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-c cagcucuac- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCU GAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa -a---)---- ---------- ---------- UAG-AAcaaa 4021 auuuu----- ----aaACGA --AAAGG-AG U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) C-AC-U--CC -U--GGAAG- -GCGGAUUUA 4141 G-U--AGUAA A-GAGAGA(- uaaua-aa-- --)GCUCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCU--GGCU 4261 CUGAGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaggcc--a 4381 uuaaa-uaaa cuauaucuaa uaugcucaua -----agcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GACG-AGG-U ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.H.arden 5213 bp RNA RNA 26-AUG-1998 DEFINITION Mitochondrion Harpactes ardens.; . ACCESSION U94810 KEYWORDS . SOURCE Mitochondrion Harpactes ardens. ORGANISM Mitochondrion Harpactes ardens. REFERENCE 1 (bases 1 to 957) AUTHORS Espinosa de los Monteros,A. TITLE Phylogenetic relationships among trogons JOURNAL Auk 115, 937-954 (1998) STANDARD No information REFERENCE 2 (bases 1 to 957) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (21-MAR-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U94810 BASE COUNT 306 a 259 c 190 g 202 t 4256 others ORIGIN 1 |~-------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUAAUU -C-UAGC-UA |GA-CA--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCACUCCAGU GUAGA---UG C|CC--uuaa --uc-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(uucccuu cuaau)---- 1261 ---------- ---------- --aa--gau- --aaAGGAGC |--------- gGACUUCA-- 1321 -GGCACGC-- -----(--cc ua-------- ---------- ---------- ------)--- 1381 ---GC|---A GCCCA--AGA C|UUCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCU--( CACG-)--GG Uauu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GAAA)A CUUGA-CUU| 1561 A|-GUCA-U- AG-CUA---- ---------- ---------- (--ucaa--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -AGU-CA)-C ACAAGA|--- -GGC-CCA-- 1981 AAUUA-ACUG U--------c caCGGC|GUA AAGAGUGGu- -agaac---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------auua uccaggag-a -cuagg--ac -----|UAAA GCACAA-CUA ----AGCU(G 2341 UCAUA)AGC| UAA------A GAUG-UACCU AAA------- ----accaac -uau(-uaag 2401 -)ac|g---- ----aucuua gucucau-ac gauuaau--- -ua-aacaCC ACGAA-AGCC 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 U--GAUGCGC |U-------- ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- gcc(ccac)c a---A-GCCA 2701 U-C|--C|GC C-UGGG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCGAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA U-ACCCAACC UCCCCUUGC- ---------- ---------- 2881 (-------ca gg-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC UA-CA|G-CU CGC-|CCU(u --cuu)GAA- -----(ggu- 3181 cca)-----A U-AGCGGGCA UGA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-c ccgauucuc- 3781 ---------G CUAAUA-AUA C-AGGUCAAG G|UAUA|GCU AAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa -a---)---- ---------- ---------- UAG-AAuacc 4021 cgacaa---- ------CCGA --AAAGG-GG U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA---C) C-AC-C--CC -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGAGA(- caaua-aa-- --)GCUCCCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACU--GGCC 4261 CUAGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaggcu--a 4381 gcaaa-uuaa ccauaacuaa uucauccaca -----agcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.H.diard 5213 bp RNA RNA 26-AUG-1998 DEFINITION Mitochondrion Harpactes diardii.; . ACCESSION U94811 KEYWORDS . SOURCE Mitochondrion Harpactes diardii. ORGANISM Mitochondrion Harpactes diardii. REFERENCE 1 (bases 1 to 956) AUTHORS Espinosa de los Monteros,A. TITLE Phylogenetic relationships among trogons JOURNAL Auk 115, 937-954 (1998) STANDARD No information REFERENCE 2 (bases 1 to 956) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (21-MAR-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U94811 BASE COUNT 317 a 245 c 182 g 212 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUAAUU -C-UAGC-UA |GA-ca--ua -uAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCAUCCCAGU GUAAA---UG C|CC--uuaa --cc-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(uucccuu auaau)---- 1261 ---------- ---------- --aa--gac- --aaAGGAGC |--------- gGACAUCA-- 1321 -GGCACGC-- -----(--cc ua-------- ---------- ---------- ------)--- 1381 ---GC|---A GCCCA--AGA C|GUCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCU--( CACG-)--GG Uauu---C-A 1501 GCA|GUA-AU UAAUAUUAAG C-AAUAAGU( ---------- ----GAAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CUA---- ---------- ---------- (--ucaa--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-UA)-C ACAAGA|--- -GGC-CCA-- 1981 AAUUA-ACAG U--------c caCGGC|GUA AAGAGUGGu- -agaac---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------auua uccaagag-a -cuaag--ac -----|UAAA ACACAA-CUA ----AGCU(G 2341 UCAUA)AGC| UAA------A GAUG-UACCU AAA------- ----gcca-a -uau(-uaag 2401 -)ac|a---- ----aucuua acaucuu-ac gauaaau--- -ca-aauaCC ACGAA-AGCC 2461 A-GGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 U--GAUGCGC |U-------- ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------a c-u(cuac)c a---A-GCCA 2701 U-C|--C|GC C-UGGG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA U-ACCCAACC UCCCCUUGC- ---------- ---------- 2881 (-------ca ga-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC UA-CA|G-CU CGC-|CCU(u --cuu)GAA- -----(ggu- 3181 cca)-----A U-AGCGAGCA UGA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-c ccuauuauc- 3781 ---------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCU AAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua -a---)---- ---------- ---------- UAG-AAuacc 4021 cuucaa---- ------ACGA --AAGGG-GA U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA---C) C-AU-C--CU -C--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGGA(- uaaua-ua-- --)GCUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCU--GGCU 4261 CUAGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagc--ca 4381 acaaa-cuaa ucauaauuaa uucaccgac- --a--agcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.H.oresk 5213 bp RNA RNA 14-SEP-1998 DEFINITION Mitochondrion Harpactes oreskios.; . ACCESSION U89239 KEYWORDS . SOURCE Mitochondrion Harpactes oreskios. ORGANISM Mitochondrion Harpactes oreskios. REFERENCE 1 (bases 1 to 939) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level Phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 939) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (01-SEP-1998) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89239 BASE COUNT 303 a 255 c 183 g 198 t 4274 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUAAUU A--UAGC-UA |GA-CA--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCAUCCCAGU GCAGA---UG C|CCU-uaau u-uc-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-ccuaua uaauc)---- 1261 ---------- ---------- --aa--gau- --aaAGGAGC |--------- aGACAUCA-- 1321 -GGCACGC-- -----(-ccu a--------- ---------- ---------- ------)--- 1381 ---GC|---A GCCCA--AGA C|GUCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GAAA)A CUUGA-CUU| 1561 A|-GUCA-U- AG-CUA---- ---------- ---------- (--ccca--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -AGC-CCA-- 1981 AAUUA-ACUG U-------u- caCGGC|GUA AAGAGUGGu- -aaagu---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------auua -ucc-ggaca acuaag--ac -----|CAAA GCACAA-CUA ----AGCU(G 2341 UCAUA)AGC| UAA------A GAUG-UACUU AAG------- ----acccgc -uau(-uaaa 2401 -)ac|g---- ----aucuua gacccccaug a-cua----a uca-aacaCC ACGAA-AGCC 2461 A-GGG---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-GGC- CCUAAA-UCU 2521 U--GAUGCGC |U-------- ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------a ua-(ucac)c a---A-GCca 2701 U-C|--C|GC C-UGGG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCAACC Uccccuugc- ---------- ---------- 2881 (-------ca aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC UC-CA|G-CU CGC-|CCU(u --ccu)GAG- -----(ggu- 3181 uca)-----A U-AGCGAGCA UGA-UAAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-c cuaau-uuc- 3781 ---------G CUAAUA-AGA C-AGGUCAAG G|UAUA|GCU AAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa -g---)---- ---------- ---------- UAG-AAcacu 4021 uauuuuaaa- ------ACGA --AAAGG-GG C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) C-GC-C--CC -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGGA(- caaua-aa-- --)GCUCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 CUGAGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- gcaggcc-ga 4381 cacua-uaaa acauagcuaa uacacucaca -----ggcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.antis 5213 bp RNA RNA 14-SEP-1998 DEFINITION Mitochondrion Pharomachrus antisianus.; . ACCESSION U89235 KEYWORDS . SOURCE Mitochondrion Pharomachrus antisianus. ORGANISM Mitochondrion Pharomachrus antisianus. REFERENCE 1 (bases 1 to 932) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level Phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 932) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (01-SEP-1998) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89235 BASE COUNT 295 a 258 c 179 g 200 t 4281 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CUG-UUAAUU U--UAGC-UA |GA-CA--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCACUCCAGU GUAAA---UG C|CC--uuac --cc-ucu-- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---cccu ac---)---- 1261 ---------- ---------- ---a--gau- --aaAGGAGC |--------- aGGCAUCA-- 1321 -GGCACGC-- -----(cccc g--------- ---------- ---------- ------)--- 1381 ---GC|---A GCCCA--AGA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GAAA)A CUUGA-CUU| 1561 A|-GUCA-U- AG-CUA---- ---------- ---------- (--cuua--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -AGC-CCA-- 1981 AAUUA-ACCG U-------ca caCGGC|GUA AAGAGUGGu- -acaac---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------auua -ucc-agaca acuaag--au -----|CGAA CUAUAA-CUA ----AGCU(G 2341 UCAUA)AGC| UUA------A GAUA-UAUAU AAG------- ----aucuuc -ccu(-uaaa 2401 -)gu|g---- ----aucuua gc-accu--c uacgacugac ga--aucaCC ACGAA-AGCU 2461 A-GGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-UGC- CCUAAA-UCU 2521 C--GAUGCGC |U-------- ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------a c-c(cuac)u a---A-GCCA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-AC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(ACAACCC 2821 A--------- ----)CGAUG C-ACCCGACC CCCCCUUGCu ---------- ---------- 2881 (-------ua ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC UC-CA|G-CU CGC-|CCU(u c-aug)AAG- -----(g-c- 3181 cua)-----A C-AGCGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-u ccaacucuc- 3781 ---------G CUAGUA-AGA C-AGGUCAAG G|UAUA|GCU AAC------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa -a---)---- ---------- ---------- UAG-AAaacc 4021 cuuaa----- ------ACGA --AAAGG-GG U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) C-GC-C--CC -C--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGAGA(- caaua-aa-- --)GCUCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCG--GGCU 4261 CUGAGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< auaggcu--a 4381 ccaaa-caaa ccauaauuaa uauacuuuua -----ugcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.auric 5213 bp RNA RNA 26-AUG-1998 DEFINITION Mitochondrion Pharomachrus auriceps.; . ACCESSION U94813 KEYWORDS . SOURCE Mitochondrion Pharomachrus auriceps. ORGANISM Mitochondrion Pharomachrus auriceps. REFERENCE 1 (bases 1 to 953) AUTHORS Espinosa de los Monteros,A. TITLE Phylogenetic relationships among trogons JOURNAL Auk 115, 937-954 (1998) STANDARD No information REFERENCE 2 (bases 1 to 953) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (21-MAR-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U94813 BASE COUNT 307 a 258 c 182 g 206 t 4260 others ORIGIN 1 |~~~------ ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CUG-UUAAUU U--UAGC-UA |GA-ca--ua -uAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCACUCCAGU GUAAA---UG C|CC--uuac --cc-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--ucccu a----)---- 1261 ---------- ---------- --ca--gau- --aaAGGAGC |--------- aGgCAUCA-- 1321 -GGCACGC-- -----(--cc cg-------- ---------- ---------- ------)--- 1381 ---GC|---A GCCCA--AGA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG Uauu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GAAA)A CUUGA-CUU| 1561 A|-GUCA-U- AG-CUA---- ---------- ---------- (--cuua--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -AGC-CCA-- 1981 AAUUA-ACCG U-------ca uaCGGC|GUA AAGAGUGGu- -acaac---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------auua -ucc-agaca acuaag--au -----|UGAA CUAUAA-CUA ----AGCU(G 2341 UCAUA)AGC| UAA------A GAUA-UAUAU AAG------- ----aucuuc -ccu(-uaaa 2401 -)gu|g---- ----aucuua gcaccccuac gacugac--- ga--gucaCC ACGAA-AGCU 2461 A-GGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-UGC- CCUAAA-UCU 2521 C--GAUGCGC |U-------- ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------a c-c(cuac)u a---A-GCCA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-AC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(ACAACCC 2821 A--------- ----)CGAUG C-ACCCGACC CCCCCUUGC- ---------- ---------- 2881 (-------ua ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC UC-CA|G-CU CGC-|CCU(u c-aug)AAG- -----(g-c- 3181 cua)-----A U-AGCGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-u ccaacucuc- 3781 ---------G CUAGUA-AGA C-AGGUCAAG G|UAUA|GCU AAC------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa -a---)---- ---------- ---------- UAG-AAuaaa 4021 cucuaa---- ------ACGA --AAAGG-AG C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) C-GC-C--CC -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAUAGA(- caaua-aa-- --)GCUCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCU--GGCU 4261 CUGAGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaggcu--a 4381 ccaaa-caaa cuauaacuaa uauacucuu- -a---ugcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.pavon 5213 bp RNA RNA 26-AUG-1998 DEFINITION Mitochondrion Pharomachrus pavoninus.; . ACCESSION U94814 KEYWORDS . SOURCE Mitochondrion Pharomachrus pavoninus. ORGANISM Mitochondrion Pharomachrus pavoninus. REFERENCE 1 (bases 1 to 954) AUTHORS Espinosa de los Monteros,A. TITLE Phylogenetic relationships among trogons JOURNAL Auk 115, 937-954 (1998) STANDARD No information REFERENCE 2 (bases 1 to 954) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (21-MAR-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U94814 BASE COUNT 305 a 258 c 186 g 205 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CUG-UUAAUU U--UAGC-UA |GA-ca--ua -uAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCACUCCAGU GUAAA---UG C|CC--uuac --cc-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--ucuuu a----)---- 1261 ---------- ---------- --ca--gau- --aaAGGAGC |--------- aGgCAUCA-- 1321 -GGCACGC-- -----(--cc cg-------- ---------- ---------- ------)--- 1381 ---GC|---A GCCCA--AGA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG Uauu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GAAA)A CUUGA-CUU| 1561 A|-GUCA-U- AG-CUA---- ---------- ---------- (--cuuua-- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -AGC-CCA-- 1981 AAUUA-ACCG U-------ca caCGGC|GUA AAGAGUGGu- -acaac---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------auua -ucc-agaca acuaag--au -----|UGAA CUAUAA-CUA ----AGCU(G 2341 UCAUA)AGC| UAA------A GAUA-UAUAU AAG------- ----aucuuc -ccu(-uaaa 2401 -)gu|g---- ----aucuua gcacuucuac gacugac--- ga--aucaCC ACGAA-AGCU 2461 A-GGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCC 2521 C--GAUGCGC |U-------- ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------a c-c(cuac)u g---A-GCCA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-AC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(ACAACCC 2821 A--------- ----)CGAUG C-ACCCGACC UCCCCUUGC- ---------- ---------- 2881 (-------ua ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC UC-CA|G-CU CGC-|CCU(c c-aug)AAG- -----(g-c- 3181 cua)-----A C-AGCGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-c cuaacucuc- 3781 ---------G CUAGUA-AGA C-AGGUCAAG G|UAUA|GCU AAC------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa -a---)---- ---------- ---------- UAG-AAuaaa 4021 cucuaa---- ------ACGA --AAAGG-GG C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) C-GC-C--CC -C--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGAGA(- caaua-aa-- --)GCUCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCU 4261 CUGAGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaggcu--a 4381 ccaga-uaaa ccauaacuaa uguacuu--u ua---ugcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.temnu 5213 bp RNA RNA 14-SEP-1998 DEFINITION Mitochondrion Priotelus temnurus.; . ACCESSION U89237 KEYWORDS . SOURCE Mitochondrion Priotelus temnurus. ORGANISM Mitochondrion Priotelus temnurus. REFERENCE 1 (bases 1 to 927) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level Phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 927) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (01-SEP-1998) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89237 BASE COUNT 293 a 251 c 183 g 200 t 4286 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUAGUU U--CAGC-UA |GA-CA--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCACUCCAGU GUAAA---UG C|CCU-uaau u-uc-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--ucuaa ucu--)---- 1261 ---------- ---------- --aa--gau- --ggAGGAGC |--------- aGGCAUCA-- 1321 -GGCACGC-- -----(-cac a--------- ---------- ---------- ------)--- 1381 ---GC|---A GCCUA--AGA C|GUCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GAAA)A CUUGA-CUU| 1561 A|-GCCA-U- AG-CUA---- ---------- ---------- (--acua--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GGC-CCA-- 1981 AAUUA-ACUG U-------ua caCGGC|GUA AAGAGUGGu- -acaac---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------ccug -ucu-uuuua acuaag--au -----|CAAA CUGCAA-CUA ----GGCU(G 2341 UCAUA)AGC| UAA------A GAUG-CAUCU AAG------- ----gcccuc -ccu(-aaaa 2401 -)ac|g---- ----aucuua gccuaaucuu gauu-----a acu-aauaCC ACGAA-AGCU 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CUUAAA-UUC 2521 U--GAUGCGC |U-------- ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------a c-u(cuac)c a---A-GCCA 2701 U-C|--C|GC C-UGGG-AAC UACGAGC(-- -AUAAAC)GC UUA--AAACC CUAAGGAC-U 2761 UG|GCGGUG- CCUCAAA-UC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUG C-ACCCAACC cccccuugc- ---------- ---------- 2881 (-------ca ga-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC UC-CA|G-CU CGC-|CCU(- c-ucu)GAA- -----(ggc- 3181 caa)-----G C-AGCAAGCG UAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-u ac-----uc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCU AAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-gc -a---)---- ---------- ---------- UAG-AAuaac 4021 c-cag----- ------ACGA --AAAGG-GG U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) C-AC-C--CC -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AGGAGA(- uaaua-aa-- --)GCUCCUC U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCU--GGCC 4261 CUGAGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaggcc--a 4381 uuaaa-caaa acauaacuaa uacaccuaca -----agcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.colla 5213 bp RNA RNA 26-AUG-1998 DEFINITION Mitochondrion Trogon collaris.; . ACCESSION U94822 KEYWORDS . SOURCE Mitochondrion Trogon collaris. ORGANISM Mitochondrion Trogon collaris. REFERENCE 1 (bases 1 to 958) AUTHORS Espinosa de los Monteros,A. TITLE Phylogenetic relationships among trogons JOURNAL Auk 115, 937-954 (1998) STANDARD No information REFERENCE 2 (bases 1 to 958) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (21-MAR-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U94822 BASE COUNT 305 a 259 c 186 g 208 t 4255 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA UGG-UUAAUU U--CAGC-UA |GA-uA--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCACCCCAGU GUGAA---UG C|CCC-cauc --uc-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--ccuaa cuc--)---- 1261 ---------- ---------- --aa--gau- --aaAGGUGC |--------- aGACAUCA-- 1321 -GGCACGC-- -----(u-cc a--------- ---------- ---------- ------)--- 1381 ---GC|---A GCCCA--AaA C|GUCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUG-AU UGACAUUAAG C-AAUAAGU( ---------- ----GAAA)G CUUGA-CUU| 1561 A|-GUUA-U- AG-CUC---- ---------- ---------- (--caca--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GGC-UCA-- 1981 AACUA-ACCA U-------ua caCGGC|GUA AAGAGUGGu- -auaau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------auua -ucu-gaaua acuagg--au -----|CAAA UUGCAA-CUG ----AGCU(G 2341 UCAUA)AGC| UUA------A GAUG-CACUU AAG------- ----accgcc -ccu(-caaa 2401 -)au|g---- ----aucuua gaacacc-au ga-ucua--- uca-ucuaCC ACGAA-AGCU 2461 A-GGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCC 2521 U--GAUGCGC |U-------- ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------a cac(ucac)c a---A-GCCA 2701 U-U|--C|GC C-UGGG-UAC UACGAGC(-- -ACAAAC)GC UUA--AAACC CUAAGGAC-U 2761 UG|GCGGUG- UUCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA U-ACCCGACC UCCCCUUGUC ---------- ---------- 2881 (-------ac ac-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-AA|UA- 3121 |CC|-GC--C |G------UC UC-CA|G-CU CGC-|CCU(u c-gcu)GAG- -----(ggc- 3181 cca)-----A C-AGCGAGCG CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-c ccacuacucc 3781 ---------G CUAAAA-AGA C-AGGUCAAG G|UAUA|GCU AAU------- ---------G 3841 G-G-GU-GG- -A-AGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa -a---)---- ---------- ---------- UAG-AAuacu 4021 ccuua----- ------ACGA --AAAGA-GG U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--UC) C-AC-C--CC -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGAGA(- caaua-ga-- --)GCUCUAU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCU--GGCC 4261 CUGGAA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaggcu--- 4381 -acaa-auaa auuauagc-u aaugugucua aa---agcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.compt 5213 bp RNA RNA 26-AUG-1998 DEFINITION Mitochondrion Trogon comptus.; . ACCESSION U94818 KEYWORDS . SOURCE Mitochondrion Trogon comptus. ORGANISM Mitochondrion Trogon comptus. REFERENCE 1 (bases 1 to 954) AUTHORS Espinosa de los Monteros,A. TITLE Phylogenetic relationships among trogons JOURNAL Auk 115, 937-954 (1998) STANDARD No information REFERENCE 2 (bases 1 to 954) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (21-MAR-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U94818 BASE COUNT 306 a 251 c 188 g 209 t 4259 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUGAUU U--AAGC-UA |AA-CA--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCACUCCAGU GUGAA---UG C|CCC-agcc --uc-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uccag cuu--)---- 1261 ---------- ---------- --aa--gau- --aaAGGAGC |--------- aGACAUCA-- 1321 -GGCACGC-- -----(uu-u a--------- ---------- ---------- ------)--- 1381 ---GC|---A GCCCA--AGA C|GUCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG Uauu---C-A 1501 GCA|GUG-AU UAACAUUAAG C-AAUAAGU( ---------- ----GAAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CUU---- ---------- ---------- (--ccua--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GGC-CCA-- 1981 AACCA-ACUG U-------ca uaCGGC|GUA AAGAGUGGu- -acaau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------auua -ucu-aagua acuaag--gc -----|CAAA CUGCAA-CUG ----AGCU(G 2341 UCAUA)AGC| UGA------A GAUG-CACUU AAG------- ----accacc -cau(-uaaa 2401 -)ac|g---- ----accuua accaccc-au ga-uaua--- cua-uauaCC ACGAA-AGCU 2461 A-GGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CAUAAA-UCC 2521 U--GAUGUGC |U-------- ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------a uau(ucac)u a---A-GCCA 2701 U-U|--C|GC C-UGGG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACC CUAAGGAC-U 2761 UG|GCGGUG- UCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAACCC 2821 A--------- ----)CGAUG C-ACCCGACC UCCCCUUGC- ---------- ---------- 2881 (--------a ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC UC-CA|G-CU CGC-|CCU(u a--cu)gaa- -----(ggu- 3181 uca)-----a c-AGCGGGCU CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-c aaaaucuuc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCU AAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ag -a---)---- ---------- ---------- UAG-AAcauu 4021 cuuua----- ------ACGA --AGAGA-GG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--UU) U-AC-C--UC -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGAGA(- ccaua-ga-- --)GCUCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GAC--GGCU 4261 CUGGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaggcc--- 4381 acaaa-uaga ucauaauuaa uacaccua-- aa---agcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.curuc 5213 bp RNA RNA 26-AUG-1998 DEFINITION Mitochondrion Trogon curucui.; . ACCESSION U94815 KEYWORDS . SOURCE Mitochondrion Trogon curucui. ORGANISM Mitochondrion Trogon curucui. REFERENCE 1 (bases 1 to 955) AUTHORS Espinosa de los Monteros,A. TITLE Phylogenetic relationships among trogons JOURNAL Auk 115, 937-954 (1998) STANDARD No information REFERENCE 2 (bases 1 to 955) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (21-MAR-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U94815 BASE COUNT 304 a 245 c 188 g 218 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---agAGACU 661 (UAG-)U-CC U|AACCU-UA Cug-UUAGUU -C-AAGC-CA |GA-CA--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCGCUCCAGU GUGAA---UG C|CCC-aacc --uc-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uccaa ucu--)---- 1261 ---------- ---------- --aa--gau- --aaAGGAGC |--------- gGACAUCA-- 1321 -GGCACGC-- -----(u-cc a--------- ---------- ---------- ------)--- 1381 ---GC|---A GCCCA--AGA C|GUCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG Uauu---C-A 1501 GCA|GUG-AU UAACAUUAAG C-AAUAAGU( ---------- ----GAAA)A CUUGA-CUU| 1561 A|-GUUA-U- GG-CUU---- ---------- ---------- (--auaua-- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GGC-CCA-- 1981 AAUUA-AuUG U-------ca uaCGGC|GUA AAGAGUGGu- -uuagc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------auua -ucu-aagua acuagg--au -----|UAAA CUGUAA-CUG ----AGCU(G 2341 UCAUA)AGC| UGA------A GAUA-CACUU AAA------- ----accacc -ucu(-uaaa 2401 -)ac|g---- ----aucuua gcuccc--au gaucuau--- -ca-cauaCC ACGAA-AGCU 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- UAUAAA-UCC 2521 U--AAUGCGC |U-------- ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------a cau(ucac)c a---A-GCCA 2701 U-U|--C|GC C-UGGG-GAC UACGAGC(-- -ACAAAC)GC UUA--AAACC CUAAGGAC-U 2761 UG|GCGGUG- UUCCAAA-CC CCCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUA C-ACCCGACC UCUCCUUGC- ---------- ---------- 2881 (-------au au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC UC-CA|G-CU CGC-|CCU(- --acu)gaa- -----(ggc- 3181 cua)-----A U-AGCGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-c caagccuuc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCU AAU------- ---------G 3841 G-G-GA-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa -a---)---- ---------- ---------- UAG-AAuauc 4021 cuuuuc---- ------ACGA --AAAGA-GG U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--UU) U-AC-U--UC -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGAGA(- cuaua-aa-- --)GCUCUAU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GAC--GGCC 4261 CUGGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< guaggcu--- 4381 acaaa-uaaa ccauagcuaa uaugccua-- ua---agcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.elega 5213 bp RNA RNA 26-AUG-1998 DEFINITION Mitochondrion Trogon elegans.; . ACCESSION U94820 KEYWORDS . SOURCE Mitochondrion Trogon elegans. ORGANISM Mitochondrion Trogon elegans. REFERENCE 1 (bases 1 to 958) AUTHORS Espinosa de los Monteros,A. TITLE Phylogenetic relationships among trogons JOURNAL Auk 115, 937-954 (1998) STANDARD No information REFERENCE 2 (bases 1 to 958) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (21-MAR-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U94820 BASE COUNT 305 a 251 c 191 g 211 t 4255 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA UAG-UUAAUU U--CAGC-UA |GA-CA--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCGUCCCAGU GUAAA---UG C|CCU-aauc --uc-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--ccuaa cca--)---- 1261 ---------- ---------- --aa--gau- --aaAGGUGC |--------- gGACAUCA-- 1321 -GGCACGC-- -----(u-cc a--------- ---------- ---------- ------)--- 1381 ---GC|---A GCCCA--AGA C|GUCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUG-AU UGACAUUAAG C-AAUAAGU( ---------- ----GUAA)G CUUGA-CUU| 1561 A|-GUCA-U- AG-CUU---- ---------- ---------- (--uaua--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GGC-UCA-- 1981 AAUUA-ACCA U-------aa caCGGC|GUA AAGAGUGGu- -auaac---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------auua -ucu-gagga acuaag--au -----|CAAA UUGUAA-CUG ----AGCU(G 2341 UCAUA)AGC| UAA------A GAUA-CACCU AAG------- ----accacc -ccu(-caaa 2401 -)au|g---- ----aucuua gagcacc-ac ga-ccua--- cca-ucuaCC ACGAA-AGCU 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCU 2521 C--GAUGCGC |U-------- ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------a uac(ucac)c a---A-GCCA 2701 U-U|--C|GC C-UGGG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACC CUAAGGAC-U 2761 UG|GCGGUG- UUCCAAA-UC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCGACC UCCCCUUGUC ---------- ---------- 2881 (-------ac au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC UC-CA|G-CU CGC-|CCU(u c-acugagg- -----(ggc- 3181 cca)-----a c-AGCGAGCG caa-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-c ccuaucucc- 3781 ---------G CUAAAA-AGA C-AGGUCAAG G|UAUA|GCU AAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa -a---)---- ---------- ---------- UAG-AAuauu 4021 ucuua----- ------ACGG --AGAUG-GG U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--UU) C-AC-C--CC -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGAGA(- caaua-ga-- --)GCUCUAU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GAU--GGCU 4261 CUGGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaggcu--- 4381 -acaa-auaa auuauaac-u aauguaucua aa---agccg ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.mel.1 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Trogon melanurus.; . ACCESSION U83763 KEYWORDS . SOURCE Mitochondrion Trogon melanurus. ORGANISM Mitochondrion Trogon melanurus. REFERENCE 1 (bases 1 to 980) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Phylogenetic relationships among and within select avian orders based on mitochondrial DNA JOURNAL (in) Mindell,D.F. (Ed.); AVIAN MOLECULAR EVOLUTION AND SYSTEMATICS: 211-245; Academic Press (1997) STANDARD No information REFERENCE 2 (bases 1 to 980) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83763 BASE COUNT 313 a 252 c 195 g 220 t 4233 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aaaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UGGAUU UA-AAGC-UA |AA-CA--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCACUCCAGU GUGAA---UG C|CCC-agcu --uc-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uccag cuu--)---- 1261 ---------- ---------- --aa--gau- --aaAGGAGC |--------- aGACAUCA-- 1321 -GGCACGC-- -----(uuac a--------- ---------- ---------- ------)--- 1381 ---GC|---A GCCCA--AGA C|GUCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUG-AU UAACAUUAAG C-AAUAAGU( ---------- ----GGAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CUU---- ---------- ---------- (--ucua--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GAC-CCA-- 1981 AAUCA-ACUG U-------ua caCGGC|GUA AAGAGUGGu- -acaau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------ucua -ucc-aagug acuaag--gu -----|CAAA CUGUAA-CUG ----AGCU(G 2341 UCAUA)AGC| UUA------A GAUG-CACUU AAG------- ----aucacc -uau(-uaaa 2401 -)ac|g---- ----accuua gcccccuaug auauac---- -ua-uauaCC ACGAA-AGCU 2461 A-GGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CAUAAA-UCC 2521 U--GAUGUGC |U-------- ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------a cau(ucac)u a---A-GCCA 2701 U-U|--C|GC C-UGGG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACC CUAAGGAC-U 2761 UG|GGGGUG- UUCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCGACC UCCCCUUGC- ---------- ---------- 2881 (--------a ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC UU-CA|G-CU CGC-|CCU(u a-acu)GAG- -----(ggu- 3181 cua)-----A C-AGCGAGCU CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-c acaaucuuc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCU AAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ag -a---)---- ---------- ---------- UAG-AAcauc 4021 cuuug----- ------ACGA --AGAGA-GG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--uu) U-AC-C--UC -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGAGA(- ccaua-aa-- --)GCUCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GAC--GGCC 4261 CUGGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaggcu--- 4381 acaaa-uaaa ucauaccuaa uauaccuaga -----agcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUAGCAUA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.mel.2 5213 bp RNA RNA 26-AUG-1998 DEFINITION Mitochondrion Trogon melanurus.; . ACCESSION U94819 KEYWORDS . SOURCE Mitochondrion Trogon melanurus. ORGANISM Mitochondrion Trogon melanurus. REFERENCE 1 (bases 1 to 956) AUTHORS Espinosa de los Monteros,A. TITLE Phylogenetic relationships among trogons JOURNAL Auk 115, 937-954 (1998) STANDARD No information REFERENCE 2 (bases 1 to 956) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (21-MAR-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U94819 BASE COUNT 306 a 249 c 186 g 215 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUGAUU U--AAGC-UA |AA-CA--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCACUCCAGU GUGAA---UG C|CCC-agcu --uc-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uccag cuu--)---- 1261 ---------- ---------- --aa--gau- --aaAGGAGC |--------- aGACAUCA-- 1321 -GGCACGC-- -----(uuac a--------- ---------- ---------- ------)--- 1381 ---GC|---A GCCCA--AGA C|GUCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUG-AU UAACAUUAAG C-AAUAAGU( ---------- ----GGAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CUU---- ---------- ---------- (--ucua--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GAC-CCA-- 1981 AAUCA-ACUG U-------ua caCGGC|GUA AAGAGUGGu- -acaau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------ucua -ucc-aagug acuaag--gu -----|CAAA CUGUAA-CUG ----AGCU(G 2341 UCAUA)AGC| UUA------A GAUG-CACUU AAG------- ----aucacc -uau(-uaaa 2401 -)ac|g---- ----accuua gcccccu-au ga-uaua--- cua-uauaCC ACGAA-AGCU 2461 A-GGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CAUAAA-UCC 2521 U--GAUGUGC |U-------- ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------a cau(ucac)u a---A-GCCA 2701 U-U|--C|GC C-UGGG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACC CUAAGGAC-U 2761 UG|GCGGUG- UUCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCGACC UCCCCUUGC- ---------- ---------- 2881 (--------a ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC UU-CA|G-CU CGC-|CCU(u a-acu)GAG- -----(ggu- 3181 cua)-----A C-AGCGAGCU CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-c acaaucuuc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCU AAU------- ---------G 3841 G-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ag -a---)---- ---------- ---------- UAG-AAcauc 4021 cuuug----- ------ACGA --AGAGA-GG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--UU) U-AC-C--UC -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGAGA(- ccaua-aa-- --)GCUCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GAC--GGCC 4261 CUGGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaggcu--- 4381 acaaa-uaaa ucauaccuaa uauaccuaga -----agcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.mexic 5213 bp RNA RNA 26-AUG-1998 DEFINITION Mitochondrion Trogon mexicanus.; . ACCESSION U94823 KEYWORDS . SOURCE Mitochondrion Trogon mexicanus. ORGANISM Mitochondrion Trogon mexicanus. REFERENCE 1 (bases 1 to 958) AUTHORS Espinosa de los Monteros,A. TITLE Phylogenetic relationships among trogons JOURNAL Auk 115, 937-954 (1998) STANDARD No information REFERENCE 2 (bases 1 to 958) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (21-MAR-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U94823 BASE COUNT 309 a 249 c 184 g 216 t 4255 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA UAG-UUAAUU -C-UAGC-UA |GA-uA--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCACCCCAGU GUGAA---UG C|CCC-aauc --uc-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cucaa ccc--)---- 1261 ---------- ---------- --aa--gac- --aaAGGCGC |--------- gGACAUCA-- 1321 -GGCACGC-- -----(uu-u a--------- ---------- ---------- ------)--- 1381 ---GC|---A GCCCA--AGA C|GUCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUG-AU UAACAUUAAG C-AAUAAGU( ---------- ----GAAA)G CUUGA-CUU| 1561 A|-GUUA-U- AG-CUU---- ---------- ---------- (--uaua--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GGC-UCA-- 1981 AAUUA-ACUA U-------ua caCGGC|GUA AAGAGUGGu- -auaac---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------auua -ucu-aaaua acuagg--au -----|CAAA UUGUAA-CUG ----AGCU(G 2341 UCAUA)AGC| UAA------A GAUG-CACUU AAG------- ----accacc -ucu(-caag 2401 -)au|g---- ----aucuua ggacacc-au ga-ucua--- uua-ucugCC ACGAA-AGCU 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCC 2521 U--AAUGCGC |U-------- ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------a cac(ucac)c a---A-GCCA 2701 U-U|--C|GC C-UGGG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACC CUAAGGAC-U 2761 UG|GCGGUG- UUCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUG C-ACCCAACC UCCCCUUGUC ---------- ---------- 2881 (-------au au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC UC-CA|G-CU CGC-|CCU(u u-acu)GAG- -----(ggc- 3181 cua)-----A C-AGCGAGCA UAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-c cca-ccccc- 3781 ---------G CUAAAA-AGA C-AGGUCAAG G|UAUA|GCU AAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa -a---)---- ---------- ---------- UAG-AAuacc 4021 cuuua----- ------ACGG --AAAGA-GA U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--UU) C-AC-C--UC -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGAGA(- cuaua-aa-- --)GCUCUAU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCU--GGCC 4261 CUGGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaggcu--- 4381 -aaca-aaua auuauagu-u aauauaucca aaua-agcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GACG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.perso 5213 bp RNA RNA 14-SEP-1998 DEFINITION Mitochondrion Trogon personatus.; . ACCESSION U89238 KEYWORDS . SOURCE Mitochondrion Trogon personatus. ORGANISM Mitochondrion Trogon personatus. REFERENCE 1 (bases 1 to 931) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level Phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 931) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (01-SEP-1998) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89238 BASE COUNT 295 a 248 c 184 g 204 t 4282 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA UGG-UUAAUU U--UAGC-UA |GA-UA--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCACCCCAGU GUGAA---UG C|CCC-aauu --uc-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--ccuua aucc-)---- 1261 ---------- ---------- --aa--gac- --aaAGGUGC |--------- aGACAUCA-- 1321 -GGCACGC-- -----(u-cc a--------- ---------- ---------- ------)--- 1381 ---GC|---A GCCCA--AGA C|GUCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUG-AU UGACAUUAAG C-AAUAAGU( ---------- ----GAAA)G CUUGA-CUU| 1561 A|-GUUA-U- AG-CUU---- ---------- ---------- (--aaua--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GGC-UCA-- 1981 AAUUA-ACCA U-------ua ugCGGC|GUA AAGAGUGGu- -auaau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------auua -ucu-aaaua acuagg--au -----|CAAA UUGUAA-CUG ----AGCU(G 2341 UCAUA)AGC| UAA------A GAUG-CAUUU AAG------- ----accacc -ccu(-caaa 2401 -)au|g---- ----aucuua gagcaccaug aucu-----a uca-uuuaCC ACGAA-AGCU 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CUUAAA-UCC 2521 U--GAUGCGC |U-------- ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------a uac(ucac)c a---A-GCCA 2701 U-U|--C|GC C-UGGG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACC CUAAGGAC-U 2761 UG|GCGGUG- CCCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUA U-ACCCGACC UCCCCUUGCc ---------- ---------- 2881 (-------ac ac-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC UC-CA|G-CU CGC-|CCU(u c-gcu)GAA- -----(ggc- 3181 cca)-----A C-AGCGAGCG CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-c ---ccc--c- 3781 ---------G CUAAAA-AGA C-AGGUCAAG G|UAUA|GCU AAU------- ---------G 3841 G-G-GC-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa -a---)---- ---------- ---------- UAG-AAuauc 4021 ccuua----- ------ACGG --AAAGA-GG U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--Uu) C-AC-C--CC -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AGGAGA(- caaua-ga-- --)GCUCUAU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 CUGGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaggcu--- 4381 acaaa-uaaa uuauaacuaa ugaguccaaa -----agcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.rufus 5213 bp RNA RNA 26-AUG-1998 DEFINITION Mitochondrion Trogon rufus.; . ACCESSION U94821 KEYWORDS . SOURCE Mitochondrion Trogon rufus. ORGANISM Mitochondrion Trogon rufus. REFERENCE 1 (bases 1 to 960) AUTHORS Espinosa de los Monteros,A. TITLE Phylogenetic relationships among trogons JOURNAL Auk 115, 937-954 (1998) STANDARD No information REFERENCE 2 (bases 1 to 960) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (21-MAR-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U94821 BASE COUNT 310 a 256 c 190 g 204 t 4253 others ORIGIN 1 |---.----- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA UAG-UUAAUU -C-UAGC-UA |GA-CA--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCACCCCAGU GUGAA---UG C|CCC-aacc --uc-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--ccuga ccc--)---- 1261 ---------- ---------- --aa--gac- --gaAGGAGC |--------- aGACAUCA-- 1321 -GGCACGC-- -----(-acu a--------- ---------- ---------- ------)--- 1381 ---GC|---A GCCCA--AGA C|GUCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUG-AU UGACAUUAAG C-AAUAAGU( ---------- ----GAAA)G CUUGA-CUU| 1561 A|-GUCA-U- AG-CUU---- ---------- ---------- (--uauua-- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GGC-UCA-- 1981 AAUUA-ACCA U-------ua caCGGC|GUA AAGAGUGGu- -auaac---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------auua -ucu-gaaua acuagg--au -----|CAAA UUGUAA-CUG ----AGCU(G 2341 UCAUA)AGC| UAA------A GAUG-CACUU AAG------- ----accauc -ccu(-caaa 2401 -)au|g---- ----aucuua gaacacc-au ga-ccca--- uca-ucuaCC ACGAA-AGCU 2461 A-GGA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CGUAAA-UCC 2521 C--GAUGCGC |U-------- ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------a uac(uuac)c a---A-GCCA 2701 U-U|--C|GC C-UGGG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACC CUAAGGAC-U 2761 UG|GCGGUG- UUCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCGACC UCCCCUUGCC ---------- ---------- 2881 (-------ac ac-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC UC-CA|G-CU CGC-|CUC(u c-acu)GAG- -----(agc- 3181 cca)-----A C-AGCGAGCG CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-c ucaa-cccc- 3781 ---------G CUAAAA-AGA C-AGGUCAAG G|UAUA|GCU AAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa -a---)---- ---------- ---------- UAG-AAuauc 4021 ucuua----- ------ACGG --AAAGA-GG C-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--UU) C-AC-C--UC -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGAGA(- caaua-ga-- --)GCUCUAU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCU--GGCU 4261 CUGGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gcaggcu--- 4381 -acaa-auua aaugauagcu aauacguaua uaaa-agcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GACG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.viola 5213 bp RNA RNA 26-AUG-1998 DEFINITION Mitochondrion Trogon violaceus.; . ACCESSION U94816 KEYWORDS . SOURCE Mitochondrion Trogon violaceus. ORGANISM Mitochondrion Trogon violaceus. REFERENCE 1 (bases 1 to 955) AUTHORS Espinosa de los Monteros,A. TITLE Phylogenetic relationships among trogons JOURNAL Auk 115, 937-954 (1998) STANDARD No information REFERENCE 2 (bases 1 to 955) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (21-MAR-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U94816 BASE COUNT 307 a 241 c 184 g 223 t 4258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---agAGACU 661 (UAG-)U-CC U|AACCU-UA Cug-UUAGUU -C-AAGC-UA |AA-CA--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCGCCCCAGU GUGAA---UG C|CCC-aacc --uc-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--ucuaa ucu--)---- 1261 ---------- ---------- --aa--gau- --aaAGGAGC |--------- gGACAUCA-- 1321 -GGCACGC-- -----(u-cc a--------- ---------- ---------- ------)--- 1381 ---GC|---A GCCCA--AGA C|GUCUU-GC --|------- (-cua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG Uauu---C-A 1501 GCA|GUG-AU UAACAUUAAG C-AAUAAGU( ---------- ----GAAA)A CUUGA-CUU| 1561 A|-GUUA-U- GG-CUU---- ---------- ---------- (--auaua-- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GAC-CCA-- 1981 AAUUA-AuUG U-------ua uaCGGC|GUA AAGAGUGGu- -uuaac---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------auua -ucu-aaaua acuaag--au -----|CAAA CUGUAA-CUG ----AGCU(G 2341 UCAUA)AGC| UAA------A GAUG-CACUU AAA------- ----accacc -ucu(-uaaa 2401 -)ac|g---- ----aucuua gccucc--au gaucuac--- -ua-cauaCC ACGAA-AGCU 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- UAUAAA-UCC 2521 U--AAUGCGC |U-------- ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------g cau(ucac)c a---A-GCCA 2701 U-U|--C|GC C-UGGG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACC CUAAGGAC-U 2761 UG|GCGGUG- UUCCAAA-CC CCCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUA U-ACCCGACC UCUCCUUGC- ---------- ---------- 2881 (-------au au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC UC-CA|G-CU CGC-|CCU(- --acu)gaa- -----(ggu- 3181 cua)-----A C-AGCGAGCA UAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-c uaagccuuc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCU AAU------- ---------G 3841 G-G-GA-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa -a---)---- ---------- ---------- UAG-AAuauc 4021 cuuuuu---- ------ACGA --AAAGA-GG U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--UU) U-AC-C--UC -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGAGA(- cuaua-aa-- --)GCUCUAU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GAC--GGCC 4261 CUGGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< guaggcu--- 4381 acaaa-uaac ccauagcuaa uaugccua-- ua---ggcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.virid 5213 bp RNA RNA 26-AUG-1998 DEFINITION Mitochondrion Trogon viridis.; . ACCESSION U94817 KEYWORDS . SOURCE Mitochondrion Trogon viridis. ORGANISM Mitochondrion Trogon viridis. REFERENCE 1 (bases 1 to 956) AUTHORS Espinosa de los Monteros,A. TITLE Phylogenetic relationships among trogons JOURNAL Auk 115, 937-954 (1998) STANDARD No information REFERENCE 2 (bases 1 to 956) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (21-MAR-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U94817 BASE COUNT 308 a 255 c 185 g 208 t 4257 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUAAUU U--AAGC-UA |AA-CA--UA -CAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCGCCCCAGU GCAAA---UG C|CCC-aacu --uc-uu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--ccuga ccc--)---- 1261 ---------- ---------- --ca--gau- --aaAGGAGC |--------- aGAUAUCA-- 1321 -GGCGCGC-- -----(u-cc a--------- ---------- ---------- ------)--- 1381 ---GC|---A GCCCA--AGA C|GUCUU-GC --|------- (-caa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG Uauu---C-A 1501 GCA|GUG-AU UAACAUUAAG C-AAUAAGU( ---------- ----GAAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CUU---- ---------- ---------- (--ugua--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GGC-CCA-- 1981 AAUUA-ACCG U-------ca caCGGC|GUA AAGAGUGGu- -acaau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------auug -ucu-aaaua acuagg--au -----|CAAA CUGCAA-CUG ----AGCU(G 2341 UCAUA)AGC| UAA------A GAUG-CACCU AAA------- ----accauc -uuu(-uaaa 2401 -)ac|g---- ----aucuua gcccc-a-au ga-ucua--- cua-cacaCC ACGAA-AGCU 2461 A-GGG---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- UAUAAA-UCC 2521 U--AAUGCGC |U-------- ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------a uau(ucac)c a---A-GCCA 2701 U-U|--C|GC C-UGGG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACC CUAAGGAC-U 2761 UG|GCGGUG- UUCCAAA-CC CCCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUA C-ACCCGACC UCUCCUUGC- ---------- ---------- 2881 (-------ac au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC UC-CA|G-CU CGC-|CCU(u u-acu)GAG- -----(ggu- 3181 cua)-----A C-AGCGAGCA UAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-c cgagccuuc- 3781 ---------G CUAGCA-AGA C-AGGUCAAG G|UAUA|GCU AAU------- ---------G 3841 G-G-GA-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa -a---)---- ---------- ---------- UAG-AAuauu 4021 aucuca---- ------ACGA --AAAGA-GG U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--CC) U-AC-C--UC -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGAGA(- cuaua-aa-- --)GCUCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GAC--GGCC 4261 CUGGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaggcu--- 4381 acaaa-uaaa ccauaacuaa uaucucua-- ua---agcca ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.Turn.sp 5213 bp RNA RNA 21-OCT-1997 DEFINITION Mitochondrion Turnix sp.; . ACCESSION U76027 KEYWORDS . SOURCE Mitochondrion Turnix sp. ORGANISM Mitochondrion Turnix sp. REFERENCE 1 (bases 1 to 867) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G.A. TITLE Phylogeny and evolution of 12S rDNA in Gruiformes (Aves) JOURNAL Academic Press (1997) In press (in) Mindell,D.P. (Ed.); AVIAN MOL EVOL SYST: Academic Pres; STANDARD No information REFERENCE 2 (bases 1 to 867) AUTHORS Houde,P., Cooper,A., Leslie,E., Strand,A.E. and Montano,G. A. TITLE Direct Submission JOURNAL Submitted (24-OCT-1996) Biology, New Mexico State University, Box 30001 / Dept. 3AF, Las Cruces, NM 88003, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U76027 BASE COUNT 279 a 241 c 160 g 187 t 4346 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aaaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUAAUU -C-UUAC-UA |AA-CU--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GUAAA---UG C|CCU-Cucc -ccu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--ucacu uaug-)---- 1261 ---------- ---------- --cg--gga- --aAAGGAGC |--------- aGGUAUCA-- 1321 -GGCCCAC-- -----(ccac cagcu----- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-uuu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAca---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GCAA)A CUUGA-CUU| 1561 A|-GUUA-U- GG-UAA---- ---------- ---------- (--------- ---ucca--- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -AAC-CCA-- 1981 AAUUA-ACUG U--------a uaCGGC|GUA AAGAGUGGu- -aacac---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----guuau -cgcaccaa- -cuaga--ac -----|CAAA GUACAA-CCA ----AGCC(G 2341 UCACA)CGC| CCA------A GAUG-UAUCU AAA------- -----uucac -c-u(-caaa 2401 -)au|g---- ----auucua gccacuguu- gauc------ aauugaauCC ACGAA-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CUUAAA-UCU 2521 U--GAUG-UU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(uuac)c aa--A-AACA 2701 U-C|--C|GC C-CGGG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACC CUAAGGAC-U 2761 UG|GCGGUG- UCCUAAA-UC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUG C-ACCCAACC ACCCCUUGCC ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUC(C --CUU)GAG- -----(ag-- 3181 --a)-----a c-AGCAGCGA ACA-CAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-a guuuaaccc- 3781 ---------A CUAGCA-AGA C-AGGUCGAG G|UAUA|GCC UAU------- ---------G 3841 A-G-GU-GG- -U-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAuaac 4021 cc-------- ------ACGG --AAGAA-AG U-G(------ ---------- ---------- 4081 ---------- ---------- ugaaa--c-) C-AC-U--UC -C--AAAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GAGGGA(- uaaua-a--u --)GCCUCCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACC--GGCC 4261 CUAGGA-CA- CGUACAUA-C -CGCCC~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.T.varia 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Turnix varia.; . ACCESSION U83743 KEYWORDS . SOURCE Mitochondrion Turnix varia. ORGANISM Mitochondrion Turnix varia. REFERENCE 1 (bases 1 to 969) AUTHORS Knight,A., Sawchuk,S.J. and Yuri,T. Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., TITLE orders based on mitochondrial DNA Phylogenetic relationships among and within select avian JOURNAL SYSTEMATICS: 211-245; Academic Press (1997) (in) Mindell,D.F. (Ed.) ; AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 969) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83743 BASE COUNT 310 a 281 c 180 g 198 t 4244 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCG-UUAAUU -C-UUAC-CA |AA-CU--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GUAAA---UG C|CCC-cucc --cc-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uaugu cuaua)---- 1261 ---------- ---------- --cg--gga- a--AAGGAGC |--------- AGGUAUCA-- 1321 -GGCCCAC-- -----(ccac cagcc----- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UACA---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GUUA-U- GG-UAA---- ---------- ---------- (--------- ---uuca--- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -AAC-CCA-- 1981 AAUUA-ACUG C--------- guCGGC|GUA AAGAGUGGU- -aacau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-cua -uc-acauua acuaga--au -----|CAAA GUACAA-CCA ----AGUU(G 2341 UCAUA)CGC| CCA------A GAUG-UACCU AAA------- -----uacac --cc(-caaa 2401 -)au|g---- ----auccua gccacuguc- gacc------ aauugaacCC ACGAA-AGCU 2461 A-AGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-UCU 2521 U--GAUG-UU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(ucac)c a---A-AGCA 2701 U-C|--C|GC C-CGGG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACC CUAAGGAC-U 2761 UG|GCGGUG- UCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUACCCC 2821 A--------- ----)CGAUA C-ACCCGACC ACCCCUUGCC ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CU CAC-|CUC(C --CUU)GAG- -----(aga- 3181 aca)-----A C-AGCGAGCA CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --cuaaccc- 3781 ---------A CUAACA-AGA C-AGGUCGAG G|UAUA|GCC UAU------- ---------G 3841 G-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AGcaac 4021 uc-------- ------ACGG --AAGAA-AG U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) C-AC-U--UC -C--AAAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GAGAGA(- caaua-ac-- --)GCUCCCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCU--GGCC 4261 CUAGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< auaagcc--- 4381 -ccca-acca cuauacuuaa uauccccc-- cu---agcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------AA GACG-AGG-U AAGUCGUAAC AAGGUAAG-C GUA-CC(GGA 4621 -A)GGU-GC- -UUUAGCAUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.U.epops 5213 bp RNA RNA 02-JAN-1999 DEFINITION Mitochondrion Upupa epops.; . ACCESSION U89213 KEYWORDS . SOURCE Mitochondrion Upupa epops. ORGANISM Mitochondrion Upupa epops. REFERENCE 1 (bases 1 to 924) AUTHORS Espinosa de los Monteros,A. TITLE Higher-level phylogeny of Trogoniformes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 924) AUTHORS Espinosa de los Monteros,A. TITLE Direct Submission JOURNAL Submitted (11-FEB-1997) Ornithology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U89213 BASE COUNT 282 a 280 c 190 g 172 t 4289 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CAG-UUGGCC -C-CUAU-UA |GA-CA--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCGCCCCAGU GUAAA---UG C|CCU-caac --cu-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---ccaa ug---)---- 1261 ---------- ---------- --ag--aca- a--gaggaGC |--------- gGGCAUCA-- 1321 -GGCUCGC-- -----(cgca cuauaaccgu ag-------- ---------- ------)--- 1381 ---GC|---u GCCAA--AGA C|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACC------ ---------- ---------- -|-CCCC--( CACG-)--GG CAau---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUGAGC( ---------- ----GAAA)G CUUGA-CUU| 1561 A|-GCCA-U- AG-UAG---- ---------- ---------- (-agauuaa- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGG|--- -AAC-CCA-- 1981 AGUCA-ACUG U-------ua ccCGGC|GUA AAGAGUGG-- --guac---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----uaccu -aucac-aag acuaua--gc -----|CAAA AUGUAA-UUA ----AGCU(G 2341 UCGCA)AGC| UUA------G ACUA-CACAC AGG------- ---------- --ac(-cacc 2401 -)a-|----- ----acuaua gucgcaac-g acca-----a cac-ucccCC ACGAA-AGCU 2461 A-GGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CCUAAA-UCU 2521 A--GAUG-CU |UC|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- cau(ccac)c a---A-AGCA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -AUAAAC)GC UUG--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CUCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUGACCC 2821 A--------- ----)CGCUA C-ACCCAACC CCCUCUUGCA ---------- ---------- 2881 (---gag--- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CAC-|CUU(C --CCU)GAA- -----(agu- 3181 acc)-----A C-AGCCGGCA CAA-CAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ccccc-- 3781 ---------A CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 A-G-GG-GG- -C-AGA--AA -UGGGCUACA UU--ACCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a cu---)---- ---------- ---------- UAG-GUuac- 4021 ---------- ------ACGA --AAGGG-GC C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAgc--) U-GU-C--CC -C--GGAAG- -GCGGAUUUA 4141 G-U--AGUAA A-GGGGGA(- caaua-au-- --)ACUCCCU U-uaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACA--GGCC 4261 CUGGAG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gcaagccca- 4381 uucca-cagc auaauuaaua cc---acaca ---cucgcug ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGG-U ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.novae 5213 bp RNA RNA 03-MAR-1998 DEFINITION Mitochondrion Dromaius novaehollandiae.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Val; tRNA-Val gene. ACCESSION AJ0029 4 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Val; tRNA-Val gene. SOURCE Mitochondrion Dromaius novaehollandiae. ORGANISM Mitochondrion Dromaius novaehollandiae. REFERENCE 1 (bases 1 to 2634) AUTHORS van Tuinen,M., Sibley,C.G. and Hedges,S.B. TITLE of the mitochondrial ribosomal genes Ratite phylogeny and biogeography inferred from DNA sequences JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2634) AUTHORS Hedges,S.B. TITLE Direct Submission JOURNAL Submitted (14-NOV-1997) Hedges S.B., Biology, Pennsylvania State University, 208 Mueller Laboratory, University Park, PA 16802, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AJ002924 BASE COUNT 324 a 255 c 182 g 204 t 4248 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CUG-UUAAUU -U-UCGC-UA |AA-CA--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCACCCCAGU GUAAA---UG C|CCU--uaa -cgu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--ccccc c----)---- 1261 ---------- ---------- --ag---ac- g-aaAGGAGC |--------- aGGUAUCA-- 1321 -GGCACAC-- -----(uuuc cca------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|ACCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU AAACAUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CGA---- ---------- ---------- (-ccuuaa-- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AACUA-ACAG U--------a auCGGC|GUA AAGUGUGGua -auacg---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------cu auccaacc-a acuaag--au -----|CAAA AUGCAA-CCA ----AGCU(G 2341 UCAUA)AGC| CUA------A GAUG-CACCU AAG------- -----accac -CAU(-GAAA 2401 -)AU|G---- ----aucuua gcacaugu-g auaa-----a cuu-uaacCC ACGAA-AGCU 2461 A-AGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-UCU 2521 U--GAUA-CU |CA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(uuac)c a---G-AGCA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCAGCC AUCUCUUGCC ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CGC-|CUA(A --UGA)AAG- -----(aa-- 3181 -ca)-----A U-AGCGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cacuuc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCG UAU------- ---------G 3841 A-G-AU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ca---)---- ---------- ---------- UAG-AAuauc 4021 c--------- ------ACGA --AAGAA-GA U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) C-AC-C--UU -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-ACAGAA(- uaaga-ga-- --)GUCUAUU U-uaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCU--GGCU 4261 CUAGGG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcuac- 4381 aagca-cccu auaaauaaua -a-ucucc-- uca---gcug ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------ag GAUG-AGG-C AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGUAUA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.ame.1 5213 bp RNA RNA 02-JUL-1996 DEFINITION Mitochondrion Rhea americana.; ribosomal RNA. ACCESSION U59664 KEYWORDS ribosomal RNA. SOURCE Mitochondrion Rhea americana. ORGANISM Mitochondrion Rhea americana. REFERENCE 1 (bases 1 to 964) AUTHORS Mindell,D.P., Knight,A., Baer,C. and Huddleston,C.J. TITLE rate and body temperature hypotheses Slow rates of molecular evolution in birds and the metabolic JOURNAL Mol. Biol. Evol. 13, 422-426 (1996) STANDARD No information REFERENCE 2 (bases 1 to 964) AUTHORS Mindell,D.P., Knight,A., Baer,C. and Huddleston,C.J. TITLE Direct Submission JOURNAL Submitted (31-MAY-1996) Dept. of Biology and Museum of Zoology, University of Michigan, 1109 Geddes Ave., Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U59664 BASE COUNT 312 a 267 c 193 g 191 t 4250 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aaaAGAAU 661 (UAG-)U-AC U|AACCU-UA CUG-UUAAUU -U-UAGC-UA |AA-CA--UA -UAC-A-UGC 721 --AGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCGCACCAGU GAUAAa--UG C|CCU-cagc --gu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--acccc cgc--)---- 1261 ---------- ---------- --ag--acc- u--aAGGAGC |--------- aGGUAUCA-- 1321 -GGCGCAC-- -----(uaga uc-------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UGAUAUUAAG C-AAUAAGU( ---------- ----GCAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CGA---- ---------- ---------- (--------- -ccgcn---- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GAC-CCG-- 1981 AACUA-ACAG U--------a auCGGC|GUA AAGUGUGGUa -a-cau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g--uu -auccagcua gcuaag--ac -----|CAAA AUGCAA-CUA ----AGCU(G 2341 UCAUA)AGC| UAA------C GAUG-CACCU AAA------- -----acccc -cau(-aaag 2401 -)au|g---- ----gucuua guacccac-- gauca----- auuuaagcCC ACGAA-AGCU 2461 A-AGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-UCC 2521 C--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(ccac)c c---A-AGUA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- -CCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCGACC AUCUCUUGCC ---------- ---------- 2881 (-------ca ug-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC CC-CA|G-CC CGC-|CUU(A --AAU)GAG- -----(aga- 3181 aca)-----A C-AGCAAGCA UAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaccc- 3781 ---------G CUAGCA-AGA C-AGGUCAAG G|UAUA|GCA UAU------- ---------G 3841 A-G-AU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g uc---)---- ---------- ---------- UAG-AAcagc 4021 c--------- ------ACGA --AAGAG-GG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-AC-C--CU -C--CGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GUGGGA(- ucaga-aa-- --)GCCCACU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 CUAGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcu--- 4381 acccu-acua aauaaauaau acuacua--- uu---agcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------AA GAUG-AGG-C AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGCACA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.ame.2 5213 bp RNA RNA 03-MAR-1998 DEFINITION Mitochondrion Rhea americana; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Val; tRNA-Val gene. ACCESSION AJ0029 3 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Val; tRNA-Val gene. SOURCE Mitochondrion Rhea americana. ORGANISM Mitochondrion Rhea americana. REFERENCE 1 (bases 1 to 2613) AUTHORS van Tuinen,M., Sibley,C.G. and Hedges,S.B. TITLE Ratite phylogeny and biogeography inferred from DNA sequences of the mitochondrial ribosomal genes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2613) AUTHORS Hedges,S.B. TITLE Direct Submission JOURNAL Submitted (14-NOV-1997) Hedges S.B., Biology, Pennsylvania State University, 208 Mueller Laboratory, University Park, PA 16802, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AJ002923 BASE COUNT 311 a 270 c 186 g 193 t 4253 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGAAU 661 (UAC-)U-CC U|AACCU-UA CUG-UUAAUU -U-UCGC-UA |AA-CA--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCGCACCAGU GUAAA---UG C|CCU-cagc --gu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--acccc ac---)---- 1261 ---------- ---------- --ag--acc- u--aAGGAGC |--------- aGGUAUCA-- 1321 -GGCGCAC-- -----(uaca cc-------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UGACAUUAAG C-AAUAAGU( ---------- ----GCAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CGA---- ---------- ---------- (--------- -ccacc---- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GAC-CCG-- 1981 AACUA-ACAG U--------a aucGGC|GUA AAGUGUGGUa -a-cau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g--uu -auccagcua gcuaag--ac -----|CAAA AUGCAA-CUA ----AGCU(G 2341 UCAUA)AGC| UAA------C GAUG-CACCU AAA------- -----acccc -cau(-aaaa 2401 -)au|g---- ----gucuua guacccac-- gauca----- auuuaaacCC ACGAA-AGCU 2461 A-AGG---CA CCAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-UCC 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(ccac)c u---A-AGUA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCGACC AUCUCUUGCC ---------- ---------- 2881 (-------ca ug-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC CC-CA|G-CC CGC-|CUU(A --AGU)GAA- -----(ag-- 3181 --a)-----A C-AGCAGGCA UAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaccc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCA UAU------- ---------G 3841 G-G-AU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a uc---)---- ---------- ---------- UAG-AAcaac 4021 c--------- ------ACGG --AAGAG-GG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-AC-C--CU -C--CGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GUAGGA(- ucaga-aa-- --)GCCCACU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 CUAGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcu--- 4381 aucuu-acua aauaaauaau acuauua--- uc---agcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------AA GAUG-AGG-C AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGCACA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.ame.3 5213 bp RNA RNA 29-JUN-1998 DEFINITION Mitochondrion Rhea americana.; 12S rRNA; 16S rRNA; ATPase 6; ATPase 8; COI gene; COII gene; COIII gene; control region; cytochrome b; mitochondrial; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR) ; tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. ACCESSION Y16884 KEYWORDS 12S rRNA; 16S rRNA; ATPase 6; ATPase 8; COI gene; COII gene; COIII gene; control region; cytochrome b; mitochondrial; NADH1 gene; NADH2 gene; NADH3 gene; NADH4 gene; NADH4L gene; NADH5 gene; NADH6 gene; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu(CUN); tRNA-Leu(UUR) ; tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser(AGY); tRNA-Ser(UCN); tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Mitochondrion Rhea americana. ORGANISM Mitochondrion Rhea americana. REFERENCE 1 (bases 1 to 16710) AUTHORS Harlid,A., Janke,A. and Arnason,U. TITLE The complete mitochondrial genome of rhea americana and early avian divergences JOURNAL J. Mol. Evol. 46 (6), 669-679 (1998) STANDARD No information REFERENCE 2 (bases 1 to 16710) AUTHORS Harlid,A. TITLE Direct Submission JOURNAL Submitted (13-MAR-1998) A. Harlid, Department of Genetics, Division of Evolutionary Molecular Systematics, University of Lund, Solvegatan 29, S-223 62 Lund, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y16884 BASE COUNT 313 a 272 c 186 g 192 t 4250 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CUG-UUAAUU -U-UCGC-UA |AA-CA--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCGCACCAGU GUAAA---UG C|CCU-cagc --gu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--acccc -ac--)---- 1261 ---------- ---------- --ag--acc- u--aAGGAGC |--------- aGGUAUCA-- 1321 -GGCGCAC-- -----(uaca cc-------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AGA C|GCCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAuu---C-A 1501 GCA|GUA-AU UGACAUUAAG C-AAUAAGU( ---------- ----GCAA)A CUUGA-CUU| 1561 A|-GUUA-U- AG-CGA---- ---------- ---------- (--------- -ccacc---- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GAC-CCG-- 1981 AACUA-ACAG U--------a auCGGC|GUA AAGUGUGGUa -a-cau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g--cu -auccaacua gcuaag--ac -----|CAAA AUGCAA-CUA ----AGCU(G 2341 UCAUA)AGC| UGA------C GAUG-CACUU AAA------- -----acccc -cau(-aaaa 2401 -)au|g---- ----gucuca guacccac-- gauca----- auuuaaacCC ACGAA-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-UCC 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(ccac)c u---A-AGUA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCCGACC AUCUCUUGCC ---------- ---------- 2881 (-------ca ug-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CC|UA- 3121 |CC|-GC--C |G------UC CC-CA|G-CC CGC-|CUU(A --AGU)GAA- -----(aga- 3181 aca)-----A C-AGCAGGCA UAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaccc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCA UAU------- ---------G 3841 G-G-AU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a uc---)---- ---------- ---------- UAG-AAcaac 4021 c--------- ------ACGG --AAGAG-GG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-AC-C--CU -C--CGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GUAGGA(- ucaga-aa-- --)GCCCACU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCC 4261 CUAGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaagcu--- 4381 aucuu-acua aauaaauaau acuauua--- uc---agcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------AA GAUG-AGG-C AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGCACA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.cam.1 5213 bp RNA RNA 10-JUL-1997 DEFINITION Mitochondrion Struthio camelus.; 12S rRNA; 16S rRNA; adenine triphosphatase; ATPase; COI gene; complete; control region; cytochrome b oxidase; cytochrome c oxidase; mitochondrial; NADH. ACCESSION Y12025 KEYWORDS 12S rRNA; 16S rRNA; adenine triphosphatase; ATPase; COI gene; complete; control region; cytochrome b oxidase; cytochrome c oxidase; mitochondrial; NADH. SOURCE Mitochondrion Struthio camelus. ORGANISM Mitochondrion Struthio camelus. REFERENCE 1 (bases 1 to 16591) AUTHORS Harlid,A., Janke,A. and Arnason,U. TITLE The mtDNA sequence of the ostrich and the divergence between paleognathous and neognathous birds JOURNAL Mol. Biol. Evol. 14, 754-761 (1997) STANDARD No information REFERENCE 2 (bases 1 to 16591) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (24-MAR-1997) U. Arnason, Dept of Genetics, Division Evolutionary Molec. Systematics, University of Lund, Solvegatan 29, S-223 62 LUND, SWEDEN STANDARD No information REFERENCE 3 (bases 1 to 16591) AUTHORS Arnason,U. TITLE Direct Submission JOURNAL Submitted (10-JUL-1997) U. Arnason, Dept of Genetics, Division Evolutionary Molec. Systematics, University of Lund, Solvegatan 29, S-223 62 LUND, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y12025 BASE COUNT 322 a 263 c 181 g 200 t 4247 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CUG-UUAAUU -U-UCGC-UA |GA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GUAAA---UG C|CCU-uaau --gu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----ccc cauu-)---- 1261 ---------- ---------- --ag--aca- --aAAGGAGC |--------- AGGUAUCA-- 1321 -GGCACAC-- -----(uauc uau------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AAA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GCCA-U- GG-CGA---- ---------- ---------- (--------- cccccaa--- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AACUA-ACAG U--------a gcCGGC|GUa aaGaGUGGu- -aauau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-uua -uccaaccaa auuaag--ac -----|CCAA ACACAG-CUa ----AGCU(G 2341 UCACA)AGC| CCA------A GAUG-UUCCU AAA------- -----aucac -cau(-aaaa 2401 -)au|g---- ----gucuua acacccac-- gauca----- auuucaccCC ACGAA-AGCU 2461 A-AGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-UCA 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(ccac)c u---A-AGUA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUU C-ACCCAACC ACCCCUUGCC ---------- ---------- 2881 (--------a ug-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CGC-|CUC(A --UGA)GAG- -----(--a- 3181 aca)-----A U-AGCGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ccaccc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCA UAU------- ---------G 3841 G-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ca---)---- ---------- ---------- UAG-AAuaca 4021 c--------- ------ACGA --AAGAG-GA U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) C-AU-C--CU -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AUAGAA(- uaaga-ga-- --)GUCUAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GUC--GGCU 4261 CUAGGG-CA- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaagcu--- 4381 auaac-accc cauacauaau aagc-ucc-- gc---agcug ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------AA GAUG-AGG-U AAGuCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGCAUA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.cam.2 5213 bp RNA RNA 25-JUN-1997 DEFINITION Mitochondrion Struthio camelus.; . ACCESSION U83709 KEYWORDS . SOURCE Mitochondrion Struthio camelus. ORGANISM Mitochondrion Struthio camelus. REFERENCE 1 (bases 1 to 966) AUTHORS Knight,A., Sawchuk,S.J. and Yuri,T. Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., TITLE orders based on mitochondrial DNA Phylogenetic relationships among and within select avian JOURNAL SYSTEMATICS: 211-245; Academic Press (1997) (in) Mindell,D.F. (Ed.) ; AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 966) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Museum of Zoology, University of Michigan, 1109 Geddes Avenue, Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U83709 BASE COUNT 323 a 262 c 180 g 201 t 4247 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CUG-UUAAUU -U-UCGC-UA |GA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCAGU GUAAA---UG C|CCU-uaau --gu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----ccc cauu-)---- 1261 ---------- ---------- --ag--aca- --aAAGGAGC |--------- aGGUAUCA-- 1321 -GGCACAC-- -----(uauc uau------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AAA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GCCA-U- GG-CGA---- ---------- ---------- (--------- cccccaa--- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AACUA-ACAG UA-------- gcCGGC|GUA AAGAGUGGu- -aauau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-uua -uccaaccaa auuaag--ac -----|CCAA ACACAG-CUA ----AGCU(G 2341 UCACA)AGC| CCA------A GAUG-UUCCU AAA------- -----aucac -cau(-aaaa 2401 -)au|g---- ----gucuua acacccac-- gauca----- auuucaccCC ACGAA-AGCU 2461 A-AGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-UCA 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(ccac)c u---A-AGUA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUU C-ACCCAACC ACCCCUUGCC ---------- ---------- 2881 (--------a ug-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CGC-|CUC(A --UGA)GAG- -----(--a- 3181 aca)-----A U-AGCGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ccaccc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCA UAU------- ---------G 3841 G-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ca---)---- ---------- ---------- UAG-AAuaca 4021 c--------- ------ACGA --AAGAG-GA U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) C-AU-C--CU -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AUAGAA(- uaaga-ga-- --)GUCUAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GUC--GGCU 4261 CUAGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaagcu--- 4381 auaac-accc cauacauaau aagc-ucc-- gc---agcug ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------AA GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGCAUA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.cam.3 5213 bp RNA RNA 03-MAR-1998 DEFINITION Mitochondrion Struthio camelus.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Val; tRNA-Val gene. ACCESSION AJ0029 2 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Val; tRNA-Val gene. SOURCE Mitochondrion Struthio camelus. ORGANISM Mitochondrion Struthio camelus. REFERENCE 1 (bases 1 to 2613) AUTHORS van Tuinen,M., Sibley,C.G. and Hedges,S.B. TITLE of the mitochondrial ribosomal genes Ratite phylogeny and biogeography inferred from DNA sequences JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2613) AUTHORS Hedges,S.B. TITLE Direct Submission JOURNAL Submitted (14-NOV-1997) Hedges S.B., Biology, Pennsylvania State University, 208 Mueller Laboratory, University Park, PA 16802, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AJ002922 BASE COUNT 322 a 264 c 181 g 200 t 4246 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CUG-UUAAUU -U-UCGC-UA |GA-CA--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCACCCCAGU GUAAA---UG C|CCU-uaau --gu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cccca uu---)---- 1261 ---------- ---------- --ag--aca- --aAAGGAGC |--------- aGGUAUCA-- 1321 -GGCACAC-- -----(uauc uau------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AAA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GCCA-U- GG-CGA---- ---------- ---------- (--------- cccccaa--- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AACUA-ACAG U--------a gcCGGC|GUA AAGAGUGGu- -aauau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-uua -uccaaccaa auuaag--ac -----|CCAA ACACAG-CUA ----AGCU(G 2341 UCACA)AGC| UCA------A GAUG-UUCCU AAA------- -----aucac -cau(-aaaa 2401 -)au|g---- ----gucuua acacccac-- gauca----- auuucaccCC ACGAA-AGCU 2461 A-AGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-UCA 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(ccac)c u---A-AGUA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUU C-ACCCAACC ACCCCUUGCC ---------- ---------- 2881 (--------a ug-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CGC-|CUC(A --UGA)GAG- -----(--a- 3181 aca)-----A U-AGCGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ccaccc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCA UAU------- ---------G 3841 G-G-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ac a----)---- ---------- ---------- UAG-AAuaca 4021 c--------- ------ACGA --AAGAG-GA U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) C-AC-C--CU -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AUAGAA(- uaaga-ga-- --)GUCUAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GUC--GGCU 4261 CUAGGG-CA- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaagcu--- 4381 auaac-accc cauacauaau aagc-cucca -c---agcug ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------AA GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGCAUA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.cam.4 5213 bp RNA RNA 02-JUL-1998 DEFINITION Mitochondrion Struthio camelus.; . 1 of 3. ACCESSION AF0694 9 U837 9 KEYWORDS . 1 of 3. SOURCE Mitochondrion Struthio camelus. ORGANISM Mitochondrion Struthio camelus. REFERENCE 1 (bases 36 to 1001) AUTHORS ., Knight,A., Sawchuk,S.J. and Yuri,T. Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H.C. Jr TITLE orders based on mitochondrial DNA Phylogenetic relationships among and within select avian JOURNAL SYSTEMATICS: 211-245; Academic Press (1997) (in) Mindell,D.F. (Ed.) ; AVIAN MOLECULAR EVOLUTION AND STANDARD No information REFERENCE 2 (bases 1 to 9193) AUTHORS Sorenson,M.D., Dimcheff,D.E., Ast,J.C., Yuri,T. and Mindell,D.P. TITLE Primers for a PCR-based approach to complete mitochondrial genome sequencing JOURNAL Unpublished STANDARD No information REFERENCE 3 (bases 36 to 1001) AUTHORS Mindell,D.P., Sorenson,M.S., Huddleston,C.J., Miranda,H. C. Jr., Knight,A., Sawchuk,S.J. and Yuri,T. TITLE Direct Submission JOURNAL Submitted (06-JAN-1997) Musem of Zoology, University of Michigan, 1109 Geddes Ave., Ann Arbor, MI 48109-1079, USA STANDARD No information REFERENCE 4 (bases 1 to 9193) AUTHORS Sorenson,M.D., Dimcheff,D.E., Ast,J.C., Yuri,T. and Mindell,D.P. TITLE Direct Submission JOURNAL Submitted (02-JUN-1998) Museum of Zoology and Department of Biology, University of Michigan, 1109 Geddes Ave., Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF069429 U83709 BASE COUNT 323 a 262 c 180 g 201 t 4247 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CUG-UUAAUU -U-UCGC-UA |GA-CA--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCACCCCAGU GUAAA---UG C|CCU-uaau --gu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----ccc cauu-)---- 1261 ---------- ---------- --ag--aca- --aAAGGAGC |--------- aGGUAUCA-- 1321 -GGCACAC-- -----(uauc uau------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AAA C|GCCUU-GC --|------- (-uua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGU( ---------- ----GUAA)A CUUGA-CUU| 1561 A|-GCCA-U- GG-CGA---- ---------- ---------- (--------- cccccaa--- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-C ACAAGA|--- -GAC-CCA-- 1981 AACUA-ACAG UA-------- gcCGGC|GUA AAGAGUGGu- -aauau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-uua -uccaaccaa auuaag--ac -----|CCAA ACACAG-CUA ----AGCU(G 2341 UCACA)AGC| CCA------A GAUG-UUCCU AAA------- -----aucac -cau(-aaaa 2401 -)au|g---- ----gucuua acacccac-- gauca----- auuucaccCC ACGAA-AGCU 2461 A-AGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CUUAAA-UCA 2521 U--GAUA-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cc(ccac)c u---A-AGUA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUU C-ACCCAACC ACCCCUUGCC ---------- ---------- 2881 (--------a ug-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CGC-|CUC(A --UGA)GAG- -----(--a- 3181 aca)-----A U-AGCGAGCA CAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ccaccc- 3781 ---------G CUAACA-AGA C-AGGUCAAG G|UAUA|GCA UAU------- ---------G 3841 G-A-GU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ca---)---- ---------- ---------- UAG-AAuaca 4021 c--------- ------ACGA --AAGAG-GA U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) C-AU-C--CU -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AUAGAA(- uaaga-ga-- --)GUCUAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GUC--GGCU 4261 CUAGGA-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaagcu--- 4381 auaac-accc cauacauaau aagc-ucc-- gc---agcug ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------AA GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUAGCAUA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.undul 5213 bp RNA RNA 02-JUL-1996 DEFINITION Mitochondrion Crypturellus undulatus.; ribosomal RNA. ACCESSION U59665 KEYWORDS ribosomal RNA. SOURCE Mitochondrion Crypturellus undulatus. ORGANISM Mitochondrion Crypturellus undulatus. REFERENCE 1 (bases 1 to 962) AUTHORS Mindell,D.P., Knight,A., Baer,C. and Huddleston,C.J. TITLE Slow rates of molecular evolution in birds and the metabolic rate and body temperature hypotheses JOURNAL Mol. Biol. Evol. 13, 422-426 (1996) STANDARD No information REFERENCE 2 (bases 1 to 962) AUTHORS Mindell,D.P., Knight,A., Baer,C. and Huddleston,C.J. TITLE Direct Submission JOURNAL Submitted (31-MAY-1996) Dept. of Biology and Museum of Zoology, University of Michigan, 1109 Geddes Ave., Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U59665 BASE COUNT 314 a 256 c 183 g 209 t 4251 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGAAU 661 (UAG-)U-AC U|AACCU-UA CCA-UUAGCU -A-UCAU-UA |GA-UA--UA -UAC-A-UGC 721 --AGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCUCCAGU GAUAAa--UG C|CCU-cgc- --ccaug--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---uacc ucacu)---- 1261 ---------- ---------- --ua--gga- a-agAGGAGC |--------- gGGUAUCA-- 1321 -GGCUCAC-- -----(ucuu ---------- ---------- ---------- ------)--- 1381 ---GU|---A GCCCA--AAA C|ACCUU-GC --|------- (-cca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UCuu---C-A 1501 GCA|GUA-AU UAACUUUAAG C-UAUAAGU( ---------- ----GAAA)G CUUGA-CUU| 1561 A|-GUCA-C- AA-UGA---- ---------- ---------- (--------- ---ucca--- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GGC-CCA-- 1981 AGUUA-AUGG U--------a uuCGGC|GUA AAGCGUGGAa -a-cau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g--cu -aucuaaaca acuagg--ac -----|CAAA AUGCAU-CCA ----AGCU(G 2341 UCAUA)UGC| CUA------A GAUG-ACACC AUA------- ----accuac -aua(-aau- 2401 -)uu|g---- ----guccca guacuaaa-- gacuaa---- uuauacgcCA CGAAA-GCCA 2461 A-GGA---AC AAACUGGGA( UUAGAUACC) CCAC-UAUG| -CUUG-GCC- -CUAAA-UCU 2521 A--GAUG-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -ac(cuac)c a---A-AGCA 2701 U-U|--C|GC C-CGAG-AAC UACGAGC(-- -AUAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- -CCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUACCCC 2821 A--------- ----)CGAUU C-ACCCAACC AUCCCUCGCC ---------- ---------- 2881 (---c---ca aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-CA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC CGC-|cua(c --uga)aag- -----(agu- 3181 a--)-----A U-AGCGGUCA UAA-UAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ccauc- 3781 ---------A CUAAUA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 G-G-AU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ua---)---- ---------- ---------- UAG-ACcaca 4021 c--------- ------cCua c-uaaac-gg a-a(------ ---------- ---------- 4081 ---------- ---------- UGAAA--U-) --ac-c--cu -u--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GUGGAA(- ucaga-au-- --)GUCCACU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACU--GGCC 4261 CUAGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< auaagca--- 4381 --acu-aacc caauacauaa uacccucuca a----agcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------AA GAUG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUAGCAUA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.tao 5213 bp RNA RNA 03-MAR-1998 DEFINITION Mitochondrion Tinamus tao.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Val; tRNA-Val gene. ACCESSION AJ0029 1 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Val; tRNA-Val gene. SOURCE Mitochondrion Tinamus tao. ORGANISM Mitochondrion Tinamus tao. REFERENCE 1 (bases 1 to 2635) AUTHORS van Tuinen,M., Sibley,C.G. and Hedges,S.B. TITLE of the mitochondrial ribosomal genes Ratite phylogeny and biogeography inferred from DNA sequences JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2635) AUTHORS Hedges,S.B. TITLE Direct Submission JOURNAL Submitted (14-NOV-1997) Hedges S.B., Biology, Pennsylvania State University, 208 Mueller Laboratory, University Park, PA 16802, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AJ002921 BASE COUNT 322 a 240 c 188 g 235 t 4228 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGACU 661 (UAG-)U-CC U|AACCU-UA CCA-UUAAUU -A-UCAC-UA |AA-UA--UA -UAC-A-UGC 721 -AAGU----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- GCGUCCCAGU GUAAA---UG C|CCC-Caag -acc-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--acaac a----)---- 1261 ---------- ---------- --ua--ggu- a-agAGGAGC |--------- uGGUAUCA-- 1321 -GGCACAC-- -----(cuau uau------- ---------- ---------- ------)--- 1381 ---GU|---U GCCCA--UGA C|ACCUU-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAcu---C-A 1501 GCA|GUA-AU UAACAUUAAG C-AAUAAGC( ---------- ----GAAA)G CUUGA-CUU| 1561 A|-GUUA-U- AG-UGA---- ---------- ---------- (--gcua--- ---------- 1621 --------)- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGACC|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-CA)-U ACAAGA|--- -GGU-UCA-- 1981 AAUUA-AUGG U--------g uaCGGC|GUA AAGAGUGGga -a-uau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----g-cua -ucacauuaa acuagg--au -----|CAAA AUGCAA-CCA ----AGCU(G 2341 UCAUA)AGC| AUA------G GGUG-CACCU AAA------- -----gccuu -CAU(-AAAA 2401 -)AU|G---- ----auccua gcacuauaau gauua----a uua-caucCC ACGAAGAGCU 2461 A-GGU---AA CGAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-UCU 2521 A--GAUG-CU |UA|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- -cg(cuac)u a---A-AGCA 2701 U-C|--C|GC C-UGAG-AAC UACGAGC(-- -ACAAAC)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CCCUAAA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUACUCC 2821 A--------- ----)CGAUG U-ACCUAACC ACCUCUUGCC ---------- ---------- 2881 (--cc---cc cc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-UU CGC-|CUA(U --UGA)AAG- -----(aa-- 3181 -ua)-----A C-AGCGAGCA UAA-CAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cgccc- 3781 ---------A CUAACA-AGA C-AGGUCAAG G|UAUA|GCC CAU------- ---------G 3841 A-G-GU-GG- -U-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ag cc---)---- ---------- ---------- UAG-AAuaua 4021 uuucuuacac uua---ACGG --AAGAG-AU A-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--UC) U-UCUU--CU -C--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-CUAGAA(- uaagu-au-- --)GUUUACu U-uaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCU--GGCU 4261 CUAGGG-CA- CGUACAUA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< auaagc-aa- 4381 cuacu-cc-u auauauaaua ac-u-uuaac caa---gcua ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- --------aa GACG-AGG-U AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUAGCAUA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (19)-Croco 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.A.mis.1 5213 bp RNA RNA 25-FEB-1998 DEFINITION Mitochondrion Alligator mississippiensis.; ATP synthase; cytochrome b; cytochrome c oxidase; NADH dehydrogenase; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Ile; tRNA-Leu; tRNA-Lys; tRNA-Met; tRNA-Ser; tRNA-Trp; tRNA-Tyr; tRNA-Val. ACCESSION Y13113 KEYWORDS ATP synthase; cytochrome b; cytochrome c oxidase; NADH dehydrogenase; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Ile; tRNA-Leu; tRNA-Lys; tRNA-Met; tRNA-Ser; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Mitochondrion Alligator mississippiensis. ORGANISM Mitochondrion Alligator mississippiensis. REFERENCE 1 (bases 1 to 16642) AUTHORS Janke,A. and Arnason,U. TITLE mississippiensis and the separation between recent archosauria (birds and crocodiles) The complete mitochondrial genome of Alligator JOURNAL Mol. Biol. Evol. 14 (12), 1266-1272 (1997) STANDARD No information REFERENCE 2 (bases 1 to 16642) AUTHORS Janke,A. TITLE Direct Submission JOURNAL Submitted (09-MAY-1997) A. Janke, Dep. of Genetics, Devision of Evolutionary Molecular, Systematics, Solvegatan 29, 223 62 Lund, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y13113 BASE COUNT 317 a 265 c 204 g 191 t 4236 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- -caaCAGACU 661 (UAG-)U-CC U|GGUCU-UU UCA-UUAGCU -A-GUAC-UC |AA-CU--UA -UACcA-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGAACCAGU GAGAA---CA C|CCU-aca- -agu-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-gac--- -----)---- 1261 ---------- ---------- --ag--ac-- -gaaUGGAGC |--------- CGGCAUCA-- 1321 -GGCACAUC- -----(aacc ---------- ---------- ---------- ------)--- 1381 --GAU|---A GCCCA--AAA C|GCCUA-GC --|------- (-cca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG uc-u---C-A 1501 GCA|GUG-AU UAACCUUAAA C-CAUAAGC( ---------- ----GAAA)G CUUGA-UUU| 1561 A|-GUUA-G- AG-UAG---a uaua------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGGC|-GGU 1921 -CAAcU---C UCGU-G(-CC AGCAACC-GC -GGU-UA)-G ACGAAA|--- -ACC-UCA-- 1981 AGUUA-AUUG A-------ca aACGGC|GUA AAUUGUGGc- ---uag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------aacu cuaucucccc c-auua--gu g----|caga uacgguauca c---agua(G 2341 UGAUA)aacu uca-----uc acaccg---- ---------c aaacaucaac -aca(-aaac 2401 -)ug|g---- ----cccuaa u-----cuca aagaugua-- cuc-GAUUCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CCUUAA--ca 2521 uugGUGU-AG |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ca(caac)a g---a-CUAC 2701 C-C|-uC|GC C-AGAG-AAU UACGAGC(-- --ccc--)GC UUA--AAACU CAAAGGAC-U 2761 UG|ACGGCA- CUUUAaa-CC CCCCUAGA|G GAGCCUGU-C |CUAUA--AU CG(ACAGUAC 2821 A--------- ----)CGUUA C-ACCCGACC ACCUUUAGCC ---------- ---------- 2881 (-------ua cu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUG-UA|UA- 3121 |CC|-GC--C |G------UC GC-AA|G-CC CGU-|CCC(A --UUU)GAG- -----(gga- 3181 aau)-----a A-AACGCGCG CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -ucaaccga- 3781 ---------G CUAACA-CGU C-AGGUCAAG G|UGCA|GCC AAC------- ---------A 3841 A-G-GU-GG- -A-AGA--GA -UGGGCUACA UU--UUCUC- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(aac aug--)---- ---------- ---------- UAG-AAauau 4021 uca------- ------ACGG --AGAGC-CC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-a-) C-AG-G-ACU GU--CAAAG- -CCGGAUUUA 4141 G-C--AGUAA A-CUGGGA(- -aaga-au-- --)ACCUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -guc--GGUA 4261 ACGAAG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< ---gaaccca 4381 acaaa-augc ccaaacaaca ggcacaaugu ugggca---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------a GAUG-GGG-A AAGUCGUAAC AAGGUAAG-C GUA-CC(GGA 4621 -A)GGU-GC- ACUUGGAACA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.mis.2 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Alligator mississippiensis. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Alligator mississippiensis. ORGANISM Mitochondrion Alligator mississippiensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L28074 ID MIAMLLRRT standard; circular DNA; ORG; 2624 BP. XX AC L28074; XX DT 04-JUN-1994 (Rel. 39, Created) DT 04-JUN-1994 (Rel. 39, Last updated, Version 1) XX DE Mitochondrion Alligator mississippiensis 12S ribosomal RNA; DE transfer RNA-Val; 16S ribosomal RNA; transfer RNA-Leu, 5' end. XX KW 12S ribosomal RNA; 16S ribosomal RNA; transfer RNA-Leu; KW transfer RNA-Val. XX OS Alligator mississippiensis OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Reptilia; OC Archosauria; Crocodylia; Crocodylidae; Alligatorinae. XX OG Mitochondrion XX RN [1] RP 1-2624 RA Hedges S.B.; RT "Molecular evidence for the origin of birds"; RL Unpublished. XX CC NCBI gi: 472798 XX FH Key Location/Qualifiers FH FT rRNA 1..939 FT /product="12S ribosomal RNA" FT /gene="12S rRNA" FT /note="putative" FT tRNA 940..1007 FT /product="transfer RNA-Val" FT /note="putative" FT rRNA 1008..2595 FT /product="16S ribosomal RNA" FT /gene="16S rRNA" FT /note="putative" FT tRNA 2596..>2624 FT /product="transfer RNA-Leu" FT /note="putative" FT source 1..2624 FT /organism="Alligator mississippiensis" FT /mitochondrion FT /sequenced_mol="DNA" XX SQ Sequence 2624 BP; 929 A; 670 C; 473 G; 545 T; 7 other; BASE COUNT 319 a 251 c 191 g 178 t 4274 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---agaaucu 661 (UGG-)U-CU U|aaauc-UC CUA-UUACUU -U-UCCC-CC |UA-AU--UA -UAC-A-UGC 721 -AAGa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCACAACAGU GAAAC---AG C|CCA-cca- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-uaa--- -----)---- 1261 ---------- ---------- ------cag- g-uUUGGAGC |--------- cGGUAUCA-- 1321 -GGC------ -----(aacc ---------- ---------- ---------- ------)--- 1381 -----|---- GCCCA--AGA C|GCCAA-GC --|------- (aauuca)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UCca---C-A 1501 GCA|GUA-GU UAAUAUUAGG C-CAUAAGC( ---------- ----GAAA)G CCUGA-CCU| 1561 A|-GUAA-G- GG-GGA---c acua------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -UAA-U---C UCGU-G(-CC AGCGACC-GC -GGU-UA)-U ACGACA|--- -GAC-CCA-- 1981 AAAU-AAUAG ---------a uaCGGC|GUA AAGCACGAc- ---uag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ----uacuga cgucccuaca ccuagg--ga a----|ga-- --auaacccc a---ggcu(G 2341 UAAAA)agcc ---------a uagg-c---- ---------- -----aauaa --ga(-acca 2401 -)-u|a---- ----uucccu a-----acaa caaacaa--- cua-CAACUC GUGAA-AGCU 2461 A-GGA---CA UAAACUAAG( AUUAGAUAC) CUUA-CUAU| -ACCU-AGC- ugUAA---ca 2521 c--AAUA-AU |CA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(caac)c ----U-AUUA 2701 U-U|--C|GC C-AAAU-AAC UACGAGC(-- -AAUA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|ACGGCA- CUUUAAA-CC CCCCUAGA|G GAGCCUGU-C |CUAUA--AU CG(ACAGUAC 2821 A--------- ----)CGUUA C-ACCCGACC ACCUUUAGCC ---------- ---------- 2881 (-------ua cu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUG-UA|UA- 3121 |CC|-GC--C |G------UC GC-AA|G-CC CGU-|CCC(A --UUU)GAG- -----(gga- 3181 aac)-----a A-AACGCGCG CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -ucaaccga- 3781 ---------G CUAACA-CGU C-AGGUCAAG G|UGCA|GCC AAC------- ---------A 3841 A-G-GU-GG- -A-AGA--GA -UGGGCUACA UU--UUCUC- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(aac aug--)---- ---------- ---------- UAG-AAauau 4021 uca------- ------ACGG --AGAGC-CC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-a-) C-AG-G-ACU GU--CAAAG- --CCGAUUUA 4141 G-C--AGUAA A-CUGGGA(- -aaga-au-- --)ACCUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -guc--GGUA 4261 ACGAAG-UG- CGUACACA-C -CGCCGGUCA C-CUC--C-U C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< ---gaaccca 4381 acaaa-augc ccaaacaaca ggcacaaugu ugggca---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------a GAUG-GGG-A AAGUCGUAAC AAGGUAAG-C GUA-CC(GGA 4621 -A)GGU-GC- ACUUGGAACA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.mis.3 5213 bp RNA RNA 14-JUN-1998 DEFINITION Mitochondrion Alligator mississippiensis.; . ACCESSION AF0694 8 KEYWORDS . SOURCE Mitochondrion Alligator mississippiensis. ORGANISM Mitochondrion Alligator mississippiensis. REFERENCE 1 (bases 1 to 15898) AUTHORS Mindell,D.P., Sorenson,M.D., Dimcheff,D.E., Hasegawa,M. and Yuri,T. TITLE Phylogeny of birds and placement of turtles based on whole mitochondrial genomes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 9137 to 9589) AUTHORS Mindell,D.P., Sorenson,M.D. and Dimcheff,D.E. TITLE Translational frameshifting in animal mitochondrial DNA JOURNAL Unpublished STANDARD No information REFERENCE 3 (bases 1 to 15898) AUTHORS Sorenson,M.D., Dimcheff,D.E., Ast,J.C., Yuri,T. and Mindell,D.P. TITLE Primers for a PCR-based approach to complete mitochondrial genome sequencing JOURNAL Unpublished STANDARD No information REFERENCE 4 (bases 1 to 15898) AUTHORS Sorenson,M.D., Dimcheff,D.E., Ast,J.C., Yuri,T. and Mindell,D.P. TITLE Direct Submission JOURNAL Submitted (02-JUN-1998) Museum of Zoology and Department of Biology, University of Michigan, 1109 Geddes Ave., Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF069428 BASE COUNT 250 a 203 c 164 g 149 t 4447 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|- ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~~- -----(~~~~ ~~-------- ---------- ---------- ------)--- 1381 --~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|------- (~~~~~~)-- -------~~| 1441 ~~~~------ ---------- ---------- -|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~-~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~UUA-G- AG-UAG---a uaua------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGGC|-GGU 1921 -CAAcU---C UCGU-G(-CC AGCAACC-GC -GGU-UA)-G ACGAAA|--- -ACC-UCA-- 1981 AGUUA-AUUG A-------ca aACGGC|GUA AAUUGUGGc- ---uag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------aacu cuaucucccc c-auua--gu g----|caga uacgguauca c---agua(G 2341 UGAUA)aacu uca-----uc acaccg---- ---------c aaacaucaac -aca(-aaac 2401 -)ug|g---- ----cccuaa u-----cuca aagaugua-- cuc-GAUUCC ACGAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CCUUAA--ca 2521 uugGUGU-AG |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ca(caac)a g---a-CUAC 2701 C-C|-uC|GC C-AGAG-AAU UACGAGC(-- --ccc--)GC UUA--AAACU CAAAGGAC-U 2761 UG|ACGGCA- CUUUAaa-CC CCCCUAGA|G GAGCCUGU-C |CUAUA--AU CG(ACAGUAC 2821 A--------- ----)CGUUA C-ACCCGACC ACCUUUAGCC ---------- ---------- 2881 (-------ua cu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUG-UA|UA- 3121 |CC|-GC--C |G------UC GC-AA|G-CC CGU-|CCC(A --UUU)GAG- -----(gga- 3181 aac)-----a A-AACGCGCG CAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -ucaaccga- 3781 ---------G CUAACA-CGU C-AGGUCAAG G|UGCA|GCC AAC------- ---------A 3841 A-G-GU-GG- -A-AGA--GA -UGGGCUACA UU--UUCUC- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(aac aug--)---- ---------- ---------- UAG-AAauau 4021 uca------- ------ACGG --AGAGC-CC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-a-) C-AG-G-ACU GU--CAAAG- -CCGGAUUUA 4141 G-C--AGUAA A-CUGGGA(- -aaga-au-- --)ACCUAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -guc--GGUA 4261 ACGAAG-UG- CGUACACA-C -CGCCCGUCA C-CCU--CCU Cga------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -----accca 4381 acaaa-augc ccaaacaaca ggcacaaugu ugggca---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------a GAUG-GGG-A AAGUCGUAAC AAGGUAAG-C GUA-CC(GGA 4621 -A)GGU-GC- ACUUGGAACA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.acutu 5213 bp RNA RNA 02-JUL-1996 DEFINITION Mitochondrion Crocodylus acutus.; ribosomal RNA. ACCESSION U59670 KEYWORDS ribosomal RNA. SOURCE Mitochondrion Crocodylus acutus. ORGANISM Mitochondrion Crocodylus acutus. REFERENCE 1 (bases 1 to 985) AUTHORS Mindell,D.P., Knight,A., Baer,C. and Huddleston,C.J. TITLE rate and body temperature hypotheses Slow rates of molecular evolution in birds and the metabolic JOURNAL Mol. Biol. Evol. 13, 422-426 (1996) STANDARD No information REFERENCE 2 (bases 1 to 985) AUTHORS Mindell,D.P., Knight,A., Baer,C. and Huddleston,C.J. TITLE Direct Submission JOURNAL Submitted (31-MAY-1996) Dept. of Biology and Museum of Zoology, University of Michigan, 1109 Geddes Ave., Ann Arbor, MI 48109-1079, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U59670 BASE COUNT 321 a 254 c 205 g 200 t 4233 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGGUU 661 (UAG-)U-CC U|GACCU-UA UUA-UUAGCU -A-CUGC-UC |AA-CU--UA -NAN-A-UGC 721 --nGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCGCCCCAGU GNAGA--aca c|ccu-aaa- --ua------ ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(gcccaac ua---)---- 1261 ---------- ---------- ---a--ugg- a-cACGGAGN |--------- cGGCAUCA-- 1321 -GGCACAU-- -----(uaac acu------- ---------- ---------- ------)--- 1381 ---AU|---A GCCCA--CGA C|GCCUA-GC --|------- (cuaug-)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAua---C-A 1501 GCA|GUG-AU UAACAUUAAA C-CAUGAGC( ---------- ----GAAA)G CUUGA-UUU| 1561 A|-GUUA-G- AG-CAU---a aa-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGGC|-GGC 1921 -CAAuc---u ccgU-G(-CC AGCAGCC-GC -GGU-UA)-C Acagcu|a-c aGCC-CCA-- 1981 AGUUA-AUAA ---------a agcGGC|GUA AAUUGUGGCu -a-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------uuaa --aucuacua aguuaa--gg c----|gaaa agcuug-uca ----agcc(G 2341 UGAAA)agcu aa------aa accugcc--- --------aa gaacaccagu --au(-caac 2401 -)au|a---- ----gccuua a-----ccaa caagacaca- ccc-GAACCC ACGAA-AGCU 2461 G-GGG---UA CAAACUAGG( AUUAGAUAC) CCUA-CUAU| -GCCC-AGC- CCUCAA-CAA 2521 A--GGUG-UA |CU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(cuac)a ca--c-UACA 2701 C-U|--C|GC C-AGGG-GAU UACGAGC(-- -AACUU-)GC UUA--AAACC CUAAGGAC-U 2761 UG|ACGGUA- UUUCGAA-CC UACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(ACAAUAC 2821 A--------- ----)CGAUC C-ACCCAACC ACCUUUUGCC ---------- ---------- 2881 (---c---ua ag-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-GC--C |G------UC GU-AA|G-CU UAG-|CCC(A --UGA)GGG- -----(aca- 3181 ag-)------ A-ACCUAGCA CAA-UAAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-u cacuucuga- 3781 ---------G CUAGUA-CGU C-AGGUCAAG G|UGCA|GCC AAU------- ---------A 3841 A-G-UU-GG- -U-AGA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(cau ca---)---- ---------- ---------- UAG-AAauug 4021 guc------- ------ACGG --AGAGG-CC U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) c-AG-G--AC -UGUCAAAG- -ACGGAUUUA 4141 G-C--AGUAA A-UUAAGA(- gaaga-gu-- --)GCCUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -gau--GGCC 4261 CCGGAA-UA- UGUACACA-C -CGCCCGUCA C-CCU--CCU Cga------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< auuuaaccca 4381 acu-u-uugc --uacauaac -gcacauaga auucaaug-- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------a GAUG-AGG-A AAGUCGUAAC AAGGUAAG-C GUA-CC(GGA 4621 -A)GGU-GU- GCUUGGAACA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (18)-Lepid 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.Sp.punc 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Sphenodon punctatus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Sphenodon punctatus. ORGANISM Mitochondrion Sphenodon punctatus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L28076 DEFINITION Mitochondrion Sphenodon punctatus 12S ribosomal RNA; transfer RNA-Val; 16S ribosomal RNA; transfer RNA-Leu, 5' end. SOURCE Mitochondrion Sphenodon punctatus (organelle Mitochondrion Sphenodon punctatus) DNA. ORGANISM Mitochondrion Sphenodon punctatus Eukaryota; Animalia; Chordata; Vertebrata; Reptilia; Lepidosauria; Rhynchocephalia; Sphenodontidae. REFERENCE 1 (bases 1 to 2521) AUTHORS Hedges,S.B. TITLE Molecular evidence for the origin of birds JOURNAL Proc. Natl. Acad. Sci. U.S.A. (1994) In press COMMENT NCBI gi: 473510 FEATURES Location/Qualifiers rRNA 1..904 /product="12S ribosomal RNA" /gene="12S rRNA" /note="putative" tRNA 905..975 /anticodon=(pos:unspecified,aa:Val) /product="transfer RNA-Val" /note="putative" rRNA 976..2494 /product="16S ribosomal RNA" /gene="16S rRNA" /note="putative" tRNA 2495..>2521 /anticodon=(pos:unspecified,aa:Leu) /product="transfer RNA-Leu" /note="putative" source 1..2521 /organism="Mitochondrion Sphenodon punctatus" /mitochondrion="Mitochondrion Sphenodon punctatus" /sequenced_mol="DNA" BASE COUNT 328 a 219 c 172 g 185 t 4309 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGAUU 661 (UGG-)U-Ca u|AAACU-UA CUG-UUACUU -A-ACUC-UU |AA-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACACCAGU GAAAA---UG C|CCU-Uaa- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(aacaauc a----)---- 1261 ---------- ---------- --------c- c-aAAGGAGC |--------- cGGCAUCA-- 1321 -GGCACAC-- -----(caaa ---------- ---------- ---------- ------)--- 1381 ---GU|---G GCCAA--AGA C|GCCUU-GC --|------- (-cuc--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG UAca---C-A 1501 GCA|GUG-AU UAAUAUUAAG C-CAUAAGU( ---------- ----GAAA)A CUUGA-CUU| 1561 A|-GUUA-u- ag-ag----a cca------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- CGGCC|-GGU 1921 -CAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGAAU|uuu aGGC-CGA-- 1981 AAGUA-AGAG C-------ca aaCGGC|GUA AA-AGUAACU -A-aau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---caccacc -ccuucacua aaccca--ag a----|--aa aaacua-aga --ugaguu(G 2341 UAAAA)c-cu c---ua---- ---------- ---------- ---------c --au(-gaag 2401 -)au|g---- ----ucuugg g----gccaa gauaaa---- auu-GAACUU ACUAA-AAUU 2461 A-AGG---GU CAAACUGGG( AUUAGAU-C) CCCA-CUAU| -GCUU-AAU- CCUAAA-CAU 2521 C--GACA-CC |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aac(auac)a a---G-GGUG 2701 U-U|--C|GC C-CGGG-AAC UACCAGC(-- -AAAAC-)GC UAG--AAACC CUAAAGAC-U 2761 UG|ACGGUG- CCCCAAA-AC CCCCUAGA|G GAGCCUGU-U |CUAUA--AU UG(AUGAUCC 2821 G--------- ----)CAAUA A-ACCUCACC AUUUUUCGCC ---------- ---------- 2881 (-------cc ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-UC UAC-|CUU(G --UGA)AAG- -----(aac- 3181 u--)------ A-AGUAGGUC AAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---auuacc- 3781 ---------G CUAAUA-CGU C-AGGUCAAG G|UGCA|GCC AAU------- ---------A 3841 A-A-AU-GG- AA-AGA--AA -UGGGCUACA UU--cccac- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa aa---)---- ---------- ---------- ccg-ggaaau 4021 ---------- ------ACUA --AAAGU-UA A-a(------ ---------- ---------- 4081 ---------- ---------A UGAAAa---) A-AU-A--AC -A--AGAAG- -GUGGAUUUA 4141 G-U--AGUAA A-CUAGAA(- ccaua-au-- --)AUCAAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -aaa--GGCU 4261 CUGGAG-CG- CGUACACA-C -CGCCCGUCA C-CCU--CCU A--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< ---------- 4381 ---------- uu-aaacc-a a--------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- AAGG-AGG-C AAGUCGUAAC ACGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAAA- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.madag 5213 bp RNA RNA 14-DEC-1995 DEFINITION Mitochondrion Chalarodon madagascariensis.; . ACCESSION U39565 KEYWORDS . SOURCE Mitochondrion Chalarodon madagascariensis. ORGANISM Mitochondrion Chalarodon madagascariensis. REFERENCE 1 (bases 1 to 1089) AUTHORS Titus,T.A. and Frost,D.R. TITLE family Opluridae (Squamata: Iguania) Molecular homology assessment and phylogeny in the lizard JOURNAL Mol. Phylogenet. Evol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 1089) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (27-OCT-1995) Tom A. Titus, Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U39565 BASE COUNT 345 a 222 c 175 g 194 t 4277 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaGAUUU 661 (UAG-)U-CC U|AGACU-UA CCG-UUGUUU -G-UAAU-CA |AA-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUACCAGU GAGAA---uG C|C---ac-- --ua------ ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-uuaa-- -----)---- 1261 ---------- ---------- ------ua-- ----AGGAGC |--------- aGGCAUCA-- 1321 -GGCACAGU- -----(gca- ---------- ---------- ---------- ------)--- 1381 --ACU|---A GCCCA--AAA C|GCCUU-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAac---C-A 1501 GCA|GUG-AU AAACAUUAAG C-AAUGGGU( ----aaaacc cuaauuaa)A CCCGA-CUU| 1561 A|-GUUA-U- GA-UUA---a uaa------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-C---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAAG|--- -GGC-CCA-- 1981 AAACA-ACAG A-------cu -uCGGC|GUA AAUCGUGAcu -a-gaau--- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------aa- -gu-caacac a-ugag--ga c----|uaaa c---caugau c--aaaug(G 2341 UAAAA)uau- ---------u gauc-a---- ---------- ------aaug --aa(-aac- 2401 -)cg|----- ----ccccuc a-----aaac cagacca--- uuu-GAACCC ACGAA-AGCU 2461 A-AGA---AA CAAACUAGG( AUUAGAUAC) CCUA-CUAU| -GCUU-AGC- CAUAAA--ua 2521 a--GACA-CU |ua|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -cc(aaac)a a----aAGUG 2701 U-C|--C|GC C-AGAG-AAC UACAAGU(-- -GAAAA-)AC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAcauCC GACUUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA C-ACCUAACC ACCCCUAGCC ---------- ---------- 2881 (--------u au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|A-CC CAC-|CCC(A --UGA)GGG- -----(gua- 3181 aa-)------ a-AGUGGGUA AAA-UAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---uuaaca- 3781 ---------A CUAAAA-CGU C-AGGUCAAG G|UGUA|GCU AAU------- ---------A 3841 G-G-GU-GG- -U-AGA--GA -UGGGCUACA UU--UUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAA-AAca-g 4021 ---------- ------ACGG --CAAAA-UA CAG(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) C-UG-U-AUU A----GAAG- -GAGGAUUUA 4141 A-U--AGUAA A-auuggc(- aagaa-a--- --)accaauc u-ua------ ---------- 4201 ---------- ---------- ---------- ---------- ---------- aacc--CGCU 4261 CUGAAG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CAU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -uacaacuaa 4381 uauaa-ac-c uu--cau--a aac--aaaaa uuaaccaca- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------a GAUG-AGG-U AAGUCGUAAC AUGGUAAG-C GCA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.O.cuvie 5213 bp RNA RNA 14-DEC-1995 DEFINITION Mitochondrion Oplurus cuvieri.; . ACCESSION U39587 KEYWORDS . SOURCE Mitochondrion Oplurus cuvieri. ORGANISM Mitochondrion Oplurus cuvieri. REFERENCE 1 (bases 1 to 1104) AUTHORS Titus,T.A. and Frost,D.R. TITLE Molecular homology assessment and phylogeny in the lizard family Opluridae (Squamata: Iguania) JOURNAL Mol. Phylogenet. Evol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 1104) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (27-OCT-1995) Tom A. Titus, Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U39587 BASE COUNT 337 a 234 c 176 g 199 t 4267 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAAUUU 661 (UGG-)U-CC U|AGACU-UA CUG-UUGUUU -U-UAAU-CA |AA-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACACCAGU GA-ga--auG C|CCU-ac-- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(uauuaa- -----)---- 1261 ---------- ---------- ---------- --uaAGGAGC |--------- aGGCAUCA-- 1321 -GGCACAG-- -----(aacu g--------- ---------- ---------- ------)--- 1381 ---CU|---A GCCCA--AAA C|GCCUU-GC --|------- (-uac--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG CAac---C-A 1501 GCA|GUG-AU AAAUAUUAAG C-AAUGGGU( -aaaaccuuu aaaccuaa)G CCCGA-CUU| 1561 A|-GUUA-U- GA-UUA---a uua------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -CAA-C---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAGG|--- -GGC-CCA-- 1981 AAACA-ACAG A-------cu -uCGGC|GUA AAUCGUGGcu -a-gaaa--- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------aa- -gu-caacag caagag--ga c----|uaaa c---caugac c--aaaug(A 2341 UAAAA)uac- ---------u gauc-a---- ---------- ------aaug --aa(-acc- 2401 -)ca|c---- ----ucccuc a-----aaac ccgacca--- uuu-GAACCC ACGAA-AGCU 2461 A-AGA---AA CAAACUAGG( AUUAGAUAC) CCUA-CUAU| -GCUU-AGC- CGUAAA--ua 2521 u--GAUA-CU |ua|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------c caa(acac)- a-----AGUA 2701 U-C|--C|GC C-AGAG-AAC UACAAGU(-- -GAAAA-)AC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAcacCC GACUUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGCUA G-ACCUCACC AUCCUUAGCU ---------- ---------- 2881 (---a---aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|A-CU CAC-|CCC(G --UGA)GGA- -----(aag- 3181 aa-)------ a-AGUGAGUA AAA-CAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---uuaaca- 3781 ---------A CUAAAA-CGU C-AGGUCAAG G|UGUA|GCU UAU------- ---------A 3841 A-G-AU-GG- -C-AGA--GA -UGGGCUACA UU--UUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ua---)---- ---------- ---------- UAA-AAca-a 4021 ---------- ------ACGG --CAAAG-UG C-u(------ ---------- ---------- 4081 ---------- ---------G UGAAAu-c-) A-GC-A--CU ----AGAAG- -GAGGAUUUA 4141 A-U--AGUAA G-auugac(- aagaa-a--- --)accaauc u-ua------ ---------- 4201 ---------- ---------- ---------- ---------- ---------- aacu--CGCU 4261 CUGAAG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CAU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -cacaaccaa 4381 cuuaa-acuc uu--cau--a aaccaaaacu gcucaCA--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------a GAUG-AGG-U AAGUCGUAAC AUGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGAUUA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.O.cyclu 5213 bp RNA RNA 14-DEC-1995 DEFINITION Mitochondrion Oplurus cyclurus.; . ACCESSION U39585 KEYWORDS . SOURCE Mitochondrion Oplurus cyclurus. ORGANISM Mitochondrion Oplurus cyclurus. REFERENCE 1 (bases 1 to 1102) AUTHORS Titus,T.A. and Frost,D.R. TITLE Molecular homology assessment and phylogeny in the lizard family Opluridae (Squamata: Iguania) JOURNAL Mol. Phylogenet. Evol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 1102) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (27-OCT-1995) Tom A. Titus, Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U39585 BASE COUNT 343 a 234 c 174 g 195 t 4267 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aaaAAUUU 661 (UGG-)U-CC U|AGACU-UA CUG-UUGUUU -U-UAAU-CA |AA-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACACCAGU GA-ga--auG C|CCU-ac-- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(uauuaa- -----)---- 1261 ---------- ---------- ---------- --caAGGAGC |--------- aGGCAUCA-- 1321 -GGCACAG-- -----(aacc a--------- ---------- ---------- ------)--- 1381 ---CU|---A GCCCA--AAA C|GCCUU-GC --|------- (-uac--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG CAcu---C-A 1501 GCA|GUG-AU AGAUAUUAAG C-AAUGGGU( ---aaaacca aacacaaa)G CCCGA-CUU| 1561 A|-GUUA-U- GA-UUA---a uua------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -CAA-C---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-U CCGAGA|--- -GGC-CCA-- 1981 AGACA-ACAG A-------uu c-cGGC|GUA AAUCGUGGcu -a-gag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------aa -aauca--ac acuaag--ag g----|agcu aaaccaugac c--acaua(G 2341 UAAAA)uau- ---------u ggcc-a---- ---------- ------aaug --aa(-aucc 2401 -)aa|c---- ----ccucaa a-----aaua gacca----- uuu-GAACCC ACGAA-AGCU 2461 A-AGA---AA CAAACUAGG( AUUAGAUAC) CCUA-CUAU| -GCUU-AGC- CGUAAA--ua 2521 u--GAUA-CU |ua|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -cc(aaac)a ua----AGUA 2701 U-C|--C|GC C-AGAG-AAC UACAAGU(-- -GAAAA-)AC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAcaucc gAUUUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGCUA A-ACCUUACC AUCCUUAGCC ---------- ---------- 2881 (---a---au uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|A-CC CAC-|CUC(A --UGA)GAG- -----(aaa- 3181 aa-)------ a-AGUGAGUU AAA-CAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --cuaaaca- 3781 ---------A CUAAAA-CGU C-AGGUCAAG G|UGUA|GCU UAU------- ---------A 3841 G-G-AU-GG- -C-AGA--GA -UGGGCUACA UU--UUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ua---)---- ---------- ---------- UAA-AAca-c 4021 ---------- ------ACGG --CAAAG-UA C-u(------ ---------- ---------- 4081 ---------- ---------G UGAAAC-ca) A-GU-A--CA ----AGAAG- -GAGGAUUUA 4141 A-U--AGUAA G-auugac(- aagaa-a--- --)gccaauc u-ua------ ---------- 4201 ---------- ---------- ---------- ---------- ---------- aacu--CGCU 4261 CUGAAG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CAU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -cacaauaac 4381 uauaa-ac-c uu-ccau--a aaccaaaacc acccaCA--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------a GAUG-AGG-U AAGUCGUAAC AUGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGAUUA C--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.O.quadr 5213 bp RNA RNA 14-DEC-1995 DEFINITION Mitochondrion Oplurus quadrimaculatus.; . ACCESSION U39586 KEYWORDS . SOURCE Mitochondrion Oplurus quadrimaculatus. ORGANISM Mitochondrion Oplurus quadrimaculatus. REFERENCE 1 (bases 1 to 1097) AUTHORS Titus,T.A. and Frost,D.R. TITLE Molecular homology assessment and phylogeny in the lizard family Opluridae (Squamata: Iguania) JOURNAL Mol. Phylogenet. Evol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 1097) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (27-OCT-1995) Tom A. Titus, Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U39586 BASE COUNT 342 a 230 c 176 g 198 t 4267 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAAUUU 661 (UGG-)U-CC U|AGACU-UA CUG-UUGUUU -U-UAAU-CA |AA-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACACCAGU GA-ga--auG C|CCU-ac-- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-uauuaa -----)---- 1261 ---------- ---------- ---------- --caAGGAGC |--------- aGGCAUCA-- 1321 -GGCACAG-- -----(aacc a--------- ---------- ---------- ------)--- 1381 ---CU|---A GCCCA--AAA C|GCCUU-GC --|------- (-uac--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG CAgc---C-A 1501 GCA|GUG-AU UAAUAUUAAG C-AAUAGGU( ----aaaacc augaucaa)G CCUGA-CUU| 1561 A|-GUUA-U- GA-UUA---a uua------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -CAA-C---U CCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGGGG|--- -GGC-CCA-- 1981 AAACA-ACAG A-------cu -uCGGC|GUA AAUUGUGGcu -a-gaa---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------aaag ucacca--ua --aaga--gg g----|cuaa ac--caugac c--gagca(G 2341 UAAAA)uua- ---------u gauc-a---- ---------- ------aaug --aa(-accc 2401 -)aa|a---- ----cccuca a-----aaac agacua---- uuu-GAACCC ACGAA-AGCU 2461 A-AGA---AA CAAACUAGG( AUUAGAUAC) CCUA-CUAU| -GCUU-AGC- cgu-aaa-ua 2521 u--GAUA-CU |ua|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ca(uaac)a c----aAGUA 2701 U-C|--C|GC C-AGAG-AAc uACAAGU(-- -GAAAA-)AC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAuauCC GACUUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUA C-ACCUCACC ACCCUUAGCC ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|A-CU CAC-|CCC(A --UGA)GGG- -----(aaa- 3181 aa-)------ a-AGUGAGUU AAA-UAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---uaaaca- 3781 ---------A CUAGAA-CGU C-AGGUCAAG G|UGUA|GCU UAU------- ---------A 3841 A-G-GU-GG- -C-AGA--GA -UGGGCUACA UU--UUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ca---)---- ---------- ---------- UAA-AAca-a 4021 ---------- ------ACGG --CAAGA-UG U-u(------ ---------- ---------- 4081 ---------- ---------G UGAAAu-c-) A-AC-A--UC ----AAAAG- -GAGGAUUUA 4141 A-U--AGUAA G-auugac(- aagaa-a--- --)accaauc u-ua------ ---------- 4201 ---------- ---------- ---------- ---------- ---------- aacu--CGCU 4261 CUGAAG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CAU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -cacaaccac 4381 -caaa-acac uu--cau--a aac-caaauc uaccuaaca- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------a GAUG-AGG-C AAGUCGUAAC AUGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGAUUA UCAAA----| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.O.saxic 5213 bp RNA RNA 14-DEC-1995 DEFINITION Mitochondrion Oplurus saxicola.; . ACCESSION U39566 KEYWORDS . SOURCE Mitochondrion Oplurus saxicola. ORGANISM Mitochondrion Oplurus saxicola. REFERENCE 1 (bases 1 to 1096) AUTHORS Titus,T.A. and Frost,D.R. TITLE Molecular homology assessment and phylogeny in the lizard family Opluridae (Squamata: Iguania) JOURNAL Mol. Phylogenet. Evol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 1096) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (27-OCT-1995) Tom A. Titus, Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U39566 BASE COUNT 345 a 227 c 171 g 198 t 4272 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAAUUU 661 (UGG-)U-CC U|AGACU-UA CUG-UUGUUU -U-UUAU-CA |AA-AU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACACCAGU GA-ga--auG C|CCU-ac-- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-uauuaa -----)---- 1261 ---------- ---------- ---------- --caAGGAGC |--------- aGGCAUCA-- 1321 -GGCACAG-- -----(aaac a--------- ---------- ---------- ------)--- 1381 ---CU|---A GCCCA--AAA C|GCCUU-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CACG-)--GG UAuu---C-A 1501 GCA|GUG-AU UAACAUUAAG C-AAUAGGU( ----aaaacc acauuaaa)A CCUGA-CUU| 1561 A|-GUUA-U- GA-UUA---a uua------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -CAA-C---U CCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGGGG|--- -GGC-CCA-- 1981 AAACA-ACAG A-------c- auCGGC|GUA AAUUGUGGcu -a-gaaa--- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------aag -uccuuaca- --aaga--gg g----|uuaa ac--caugac c--aaaua(G 2341 UAAAA)uac- ---------u gauc-a---- ---------- ------aaug --aa(-acc- 2401 -)ca|ca--- ----cccuca u-----aaac agacua---- uuu-GAACCC ACGAA-AGCU 2461 A-AGA---AA CAAACUAGG( AUUAGAUAC) CCUA-CUAU| -GCUU-AGC- CAUAAA--ua 2521 u--GAUA-CU |ua|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a aca(acac)- a-----AGUA 2701 U-C|--C|GC C-AGAG-AAC UACAAGU(-- -GAAAA-)AC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUCAcacCC GACUUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGCUA A-ACCUCACC AUCCUUAGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|A-CU CAC-|CCC(A --UGA)GGG- -----(aaa- 3181 aa-)------ a-AGUGAGUU AAA-UAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---uaaaca- 3781 ---------A CUAAAA-CGU C-AGGUCAAG G|UGUA|GCU UAU------- ---------A 3841 A-G-AU-GG- -C-AGA--GA -UGGGCUACA UU--UUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g ca---)---- ---------- ---------- UAA-AAca-c 4021 ---------- ------ACGG --CAAGA-UA C-u(------ ---------- ---------- 4081 ---------- ---------G UGAAAc-c-) A-GU-A--CC ----AGAAG- -GAGGAUUUA 4141 A-U--AGUAA G-auugaa(- aagaa-a--- --)accaauc u-ua------ ---------- 4201 ---------- ---------- ---------- ---------- ---------- aacc--CGCU 4261 CUGAAG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CAU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -cacaa-uca 4381 ccaaa-acac uu--cau--a aacagaacca accaaca--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------a GAUG-AGG-C AAGUCGUAAC AUGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGAUUA U--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.H.macul 5213 bp RNA RNA 14-DEC-1995 DEFINITION Mitochondrion Holbrookia maculata.; . ACCESSION U39560 KEYWORDS . SOURCE Mitochondrion Holbrookia maculata. ORGANISM Mitochondrion Holbrookia maculata. REFERENCE 1 (bases 1 to 1101) AUTHORS Titus,T.A. and Frost,D.R. TITLE family Opluridae (Squamata: Iguania) Molecular homology assessment and phylogeny in the lizard JOURNAL Mol. Phylogenet. Evol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 1101) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (27-OCT-1995) Tom A. Titus, Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U39560 BASE COUNT 347 a 227 c 170 g 199 t 4270 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGUUU 661 (UGG-)U-CC U|AAACU-UA CUG-CUACUU -U-UAAU-CA |AA-UU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACACCAGU GAAA---auG C|CCU-aac- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-agcaua -----)---- 1261 ---------- ---------- ---------- --aaUGGAGC |--------- aGGUAUCA-- 1321 -GGCACGA-- -----(aggu ---------- ---------- ---------- ------)--- 1381 ---UC|---A GCCCA--AGA C|ACCAA-GC --|------- (-cau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CACG-)--GG CCcu---C-A 1501 GCA|GUN-AU AAACAUUAAG C-AAUAAGC( ----gaauau acccccaa)G CUUGA-CUU| 1561 A|-GUUA-U- GA-UUA---a aca------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-C---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAAG|--- -GGC-CCA-- 1981 AAGCA-GCAG A-------uc cuCGGC|GUA AAUCGUGAuu -agaac---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------cc -caccaaaaa acuaaa--ag c----|uaaa ca---acagc c--uaacc(G 2341 UAAAA)cac- ---------a ggcu-a---- ---------- ------aaug --aa(-acca 2401 c)ua|c---- ----gcuuuu a-----auaa aaggca---- guu-UGAACC ACGAA-AAUU 2461 A-AGA---AA CAAACUAGG( AUUAGAUAC) CCUA-CUAU| -GCUU-AAU- CGUUAA--ua 2521 u--GACA-cc |uc|a----- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -au(acac)a -----aGAUG 2701 U-C|--C|GC C-AGAA-AAU UACGAGC(-- -GAAAA-)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCCAcacCC GACUUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUACUCC 2821 A--------- ----)CGCUA G-ACCUCACC AUUCAUUGCC ---------- ---------- 2881 (-------ua ga-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|A-CU UAC-|CCU(C --UGA)AGG- -----(uaa- 3181 aa-)------ c-AGUAAGUA CAA-UAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuauua- 3781 ---------A CUAAAA-CGU C-AGGUCAAG G|UGUA|GCU UAU------- ---------A 3841 G-A-AU-GG- -A-AGA--GA -UGGGCUACA UU--UUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- CAA-AAca-u 4021 ---------- ------ACGG --CAuGG-AA CUG(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) C-AG-U--UC U---UAAAG- -GAGGAUUUA 4141 A-U--AGUAA A-acuaau(- aagaa-a--- --)auuaauu u-aA------ ---------- 4201 ---------- ---------- ---------- ---------- ---------- aaca--CGCU 4261 CUGGGG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< acaaaauaac 4381 acuua-a--- -u-auaua-a a-caauuaaa aaaaCCA--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------a GAAG-AGG-C AAGUCGUAAC AUGGUAAG-C GCA-CU(GGA 4621 -A)AGU-GU- GCUUGGCAUA AA-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.undul 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Sceloporus undulatus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Sceloporus undulatus. ORGANISM Mitochondrion Sceloporus undulatus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L28075 DEFINITION Mitochondrion Sceloporus undulatus 12S ribosomal RNA; transfer RNA-Val; 16S ribosomal RNA; transfer RNA-Leu, 5' end. SOURCE Mitochondrion Sceloporus undulatus (organelle Mitochondrion Sceloporus undulatus) DNA. ORGANISM Mitochondrion Sceloporus undulatus Eukaryota; Animalia; Chordata; Vertebrata; Reptilia; Lepidosauria; Squamata; Sauria; Iguania; Iguanidae. REFERENCE 1 (bases 1 to 2568) AUTHORS Hedges,S.B. TITLE Molecular evidence for the origin of birds JOURNAL Proc. Natl. Acad. Sci. U.S.A. (1994) In press COMMENT NCBI gi: 473506 FEATURES Location/Qualifiers rRNA 1..947 /product="12S ribosomal RNA" /gene="12S rRNA" /note="putative" tRNA 948..1017 /anticodon=(pos:unspecified,aa:Val) /product="transfer RNA-Val" /note="putative" rRNA 1018..2540 /product="16S ribosomal RNA" /gene="16S rRNA" /note="putative" tRNA 2541..>2568 /anticodon=(pos:unspecified,aa:Leu) /product="transfer RNA-Leu" /note="putative" source 1..2568 /organism="Mitochondrion Sceloporus undulatus" /mitochondrion="Mitochondrion Sceloporus undulatus" /sequenced_mol="DNA" BASE COUNT 354 a 235 c 165 g 192 t 4267 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---acAGUUU 661 (UGG-)U-CC U|AAACU-UA CUG-CUACUU -U-UAAU-CA |AA-UU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCACACCAGU GAAAC--aCG C|CCU-Aac- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(acagaa- -----)---- 1261 ---------- ---------- --------c- a-aACGGAGC |--------- aGGUAUCA-- 1321 -GGCAC---- -----(aaca aa-------- ---------- ---------- ------)--- 1381 -----|---A GCCCA--AGA C|ACCAA-GC --|------- (-uuu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CACG-)--GG UCau---C-A 1501 GCA|GUG-AU AAACAUUAAG C-AAUAAGC( gaacacacca aaauuaaa)G CUUGA-CUU| 1561 A|-GUUA-U- GG-UUA---a ca-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-C---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAGG|--- -GGC-CCA-- 1981 AAGCA-GCAG A-------cu cuCGGC|GUA AAUAGUGGcc -agaau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------aac -uaccaacac acuaaa--aa c----|u-aa acaauagccu a---a-cc(G 2341 UAAAA)cac- ---------a ggcu-a---- ---------- ------aaug --aa(-acca 2401 -)aa|c---- ----guuuuu a-----acaa ccggua---- auu-UGACCC ACGAA-AACU 2461 A-AGA---AA CAAACUAGG( AUUAGAUAC) CCUA-CUAU| -GCUU-AGU- CGUUAA--ua 2521 c--GAUA-UU |AC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(acac)u a---A-AAUA 2701 U-C|--C|GC C-AGAA-AAC UACGAGC(-- -GAAAA-)GC UUA--AAACU CAAAGGAC-U 2761 UG|CGG-UG- CUCCACA-CC GACUUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUACUCC 2821 A--------- ----)CGCUA A-ACCUCACC AAUCUUUGCC ---------- ---------- 2881 (-------aa au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GU-CA|A-CC UAC-|CUC(A --UGA)GAG- -----(aaa- 3181 aa-)------ C-AGUAAGUA CAA-AAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---uucaaa- 3781 ---------A CUAAAA-CGU C-AGGUCAAG G|UGUA|GCU AAU------- ---------A 3841 G-A-AU-GG- -G-AGA--GA -UGGGCUACA UU--UUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ua---)---- ---------- ---------- UAA-AAcaca 4021 ---------- ------ACGG --caUGG-UU CuA(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) u-UC-U--AC -C--UGAAG- -GAGGAUUUA 4141 A-U--AGUAA A-CUAACA(- agaaa-aa-- --)AGUUAAU U-UUA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- aaca--CGCU 4261 CUGGAG-CG- CCGCCACA-C -CGCCCGUCA C-CCU--CAU Cu-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< ---uacacca 4381 aca-c-caau auacauaaac cacuacaaca acaa------ ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------a GAUG-AGG-n AAGUCGUAAC AUGGUAAG-C GCA-CU(GGA 4621 -A)AGU-GU- GCUUGGACUA G--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.orton 5213 bp RNA RNA 14-DEC-1995 DEFINITION Mitochondrion Anolis ortoni.; . ACCESSION U39561 KEYWORDS . SOURCE Mitochondrion Anolis ortoni. ORGANISM Mitochondrion Anolis ortoni. REFERENCE 1 (bases 1 to 1091) AUTHORS Titus,T.A. and Frost,D.R. TITLE Molecular homology assessment and phylogeny in the lizard family Opluridae (Squamata: Iguania) JOURNAL Mol. Phylogenet. Evol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 1091) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (27-OCT-1995) Tom A. Titus, Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U39561 BASE COUNT 351 a 197 c 162 g 226 t 4277 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --aaaAGUUU 661 (UGG-)U-CC U|AAACU-UA CUA-UUAUUU -U-UGAC-CA |AA-AU--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACACCAGU GAAA---auG C|CCA-c--- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-uuaaau -----)---- 1261 ---------- ---------- ---------- --auUGGAGC |--------- aGGUAUCA-- 1321 -GGCACGA-- -----(aacu ---------- ---------- ---------- ------)--- 1381 ---UC|---A GCCCA--AGA C|ACCUU-GU --|------- (-uuu--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG UAau---C-A 1501 GCA|GUA-AU AAAAAUUAAG C-UAUGAGC( gacuaguauu uuacuuaa)G CUAGA-CUU| 1561 A|-GUUA-U- GG-UCA---u uua------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCU|-GGU 1921 -CAA-C---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAAG|--- -AGC-CCA-- 1981 AAAUA-AUAG A-------cu -aCGGC|GUA AAUAGUGAcu -aaaau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------a-u ---uaacuaa aaauaa--ga a----|acaa acau-aaauc c--uaacc(G 2341 UAAAA)caa- ---------a ggau-u---- ---------- ------gaug --aa(-gacc 2401 -)aa|c---- ----uucuuu a-----aaua agguu----- auu-UGAUUC ACGAA-AGCU 2461 G-GGA---AA CAAACUAGG( AUUAGAUAC) CCUA-CUAU| -GCCU-AGC- UGUAAA--u- 2521 ---uaca-cc |c-------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ua(uaac)u ua---uAGUG 2701 U-U|--C|GC C-AGAA-UAU UACGGAU(-- -GAAAA-)GC CUA--AAACU CAAAAGAC-U 2761 UG|GCGGUG- CUUCAuacac gAUUUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUACCCC 2821 A--------- ----)CGAUA A-ACCCAACC GCCCCUUGCC ---------- ---------- 2881 (-------aa ac-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC CU-CA|A-CU UAC-|ACU(G --UGA)AGU- -----(uaa- 3181 aa-)------ u-AGUAAGUA CAA-AAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---uuaac-- 3781 ---------A CAAAAA-AGU C-AGGUCAAA G|UGUA|GCC UAU------- ---------G 3841 C-G-GC-GG- -A-AGA--GA -UGGGCUACA UU--UUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- CAA-AAcac- 4021 ---------- ------ACGA --AAGAC-Ac u-u(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) A-GC-U--GU C---UAAAG- -GAGGAUUUA 4141 A-U--AGUAA A-auaaac(- aagaa-a--- --)guuuAUU U-UA------ ---------- 4201 ---------- ---------- ---------- ---------- ---------- aaca--CGCC 4261 CUGAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< --aa-caacu 4381 ua-aa-acaa uu--uau--a a-uuaaagaa acuaaaa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------a GAUG-AGG-U AAGUCGUAAC AUGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAUAA A--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.L.barah 5213 bp RNA RNA 14-DEC-1995 DEFINITION Mitochondrion Leiocephalus barahonensis.; . ACCESSION U39564 KEYWORDS . SOURCE Mitochondrion Leiocephalus barahonensis. ORGANISM Mitochondrion Leiocephalus barahonensis. REFERENCE 1 (bases 1 to 1082) AUTHORS Titus,T.A. and Frost,D.R. TITLE family Opluridae (Squamata: Iguania) Molecular homology assessment and phylogeny in the lizard JOURNAL Mol. Phylogenet. Evol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 1082) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (27-OCT-1995) Tom A. Titus, Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U39564 BASE COUNT 335 a 216 c 178 g 198 t 4286 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAGUUU 661 (UGG-)U-CC U|AAACU-UA CUG-UUAUUU -U-UNAU-CA |AA-UU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------acc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACACCAGU GA-ga--auG C|CCA-ac-- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-aaauua -----)---- 1261 ---------- ---------- ---------- --ca-GGAGC |--------- aGGCAUCA-- 1321 -GGCACAG-- -----(uuaa u--------- ---------- ---------- ------)--- 1381 ---CU|---A GCCCA--AGA C|GCCUU-GU --|------- (-uuu--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCA--( CACG-)--GG CAac---C-A 1501 GCA|GUG-AU AAACAUUAAG C-AAUAAGC( ---------- ---gccaa)G CUUGA-CUU| 1561 A|-GUUA-U- GA-ACA---a ua-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -AAA-C---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAGG|--- -GGC-UCA-- 1981 AAAUA-ACAG A-------ua cuCGGC|GUA AAUCGUGGcu -a-gaau--- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------uac -uuccaa--a cuacaa--ag a----|aaac aaa-uaaaac c--aaaag(G 2341 UAAAA)uua- ---------u gguc-a---- ---------- ------acag --aa(-uaac 2401 -)aa|c-a-- ----ucuuau a-----aaua ggaaa----- uuu-GACCCC ACGAA-GACU 2461 A-AGA---AA CAAACUAGG( AUUAGAUAC) CCUA-CUAU| -GCUU-AGU- UCUAAA--ua 2521 a--GAU--ug |au|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(uaac)a a----uAAUA 2701 U-C|--C|GC C-AGGG-AAC UACAAGC(-- -GAAAA-)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUCCAca-UC GACUUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUACUCC 2821 A--------- ----)CGAUA A-ACCUUACC GCCCUUGGCC ---------- ---------- 2881 (-------ca au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---G---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-AA|A-CU UAC-|UCC(A --UGA)GGA- -----(uau- 3181 aa-)------ c-AGUAAGUA CAA-AAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---uagaca- 3781 ---------A CUAAUA-CGU C-AGGUCAAG G|UGUA|GCU UAU------- ---------A 3841 G-G-GC-GG- -C-AGU--GA -UGGGCUACA UU--UUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ga---)---- ---------- ---------- UAA-AAca-c 4021 ---------- ------ACGA --CAaGA-GG C-c(------ ---------- ---------- 4081 ---------- ---------A UGAAAu-a-) G-GC-C--AC ----CGAAG- -GUGGAUUUA 4141 A-U--AGUAA G-ccuagc(- aagaa-a--- --)gcuaacc u-ua------ ---------- 4201 ---------- ---------- ---------- ---------- ---------- aacu--CGCA 4261 CUGGAG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aacaaaguau 4381 caaua-a-uc ua--uaa--u a-ccuaac-a acaaaCA--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------a GAUG-AGG-C AAGUCGUAAC AUGGUAAG-C GCA-CC(GGA 4621 -A)GGU-GU- GCUUGGACUA ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.hispi 5213 bp RNA RNA 14-DEC-1995 DEFINITION Mitochondrion Tropidurus hispidus.; . ACCESSION U39563 KEYWORDS . SOURCE Mitochondrion Tropidurus hispidus. ORGANISM Mitochondrion Tropidurus hispidus. REFERENCE 1 (bases 1 to 1096) AUTHORS Titus,T.A. and Frost,D.R. TITLE family Opluridae (Squamata: Iguania) Molecular homology assessment and phylogeny in the lizard JOURNAL Mol. Phylogenet. Evol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 1096) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (27-OCT-1995) Tom A. Titus, Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U39563 BASE COUNT 337 a 254 c 174 g 169 t 4279 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGUUU 661 (UGG-)U-CC U|AAACU-UG CCG-CUGUUU -U-UGAU-UA |AA-AU--UA -CAC-A-UGC 721 -UAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCACACCAGU GAA-u--acG C|CCU-aa-- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-aguaau -----)---- 1261 ---------- ---------- ---------- --aaCGGAGC |--------- aGGUAUCA-- 1321 -GGCACGAA- -----(accc ---------- ---------- ---------- ------)--- 1381 --UUC|---A GCCCA--AAA C|ACCUA-GC --|------- (-cca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CACG-)--GG AAcu---C-A 1501 GCA|GUG-AC AAACAUUAGG C-CAUGAGC( -----aaaca ccaauaaa)G CUCGA-CCU| 1561 A|-GUUA-U- AA-UCA---a uca------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGC 1921 -CAA-U---C UCGU-G(-CC AGCCGCC-GC -GGU-UA)-U ACGAGA|--- -GGC-CCA-- 1981 AACCA-GCAA C-------aa acCGGC|GUA AAUUGUGAcu -a-gaau--- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------guu uagcuuaacc acaaag--gg a----|aaaa cc---uaaac c--uaacc(G 2341 UAAAA)ccc- ---------a ggua-a---- ---------- ---------- --aa(-uga- 2401 -)au|----- ----ccccuu u-----auca aaagcaa--- uuu-GAACUC ACGAA-AACU 2461 A-AGA---GG CAAACUAGG( AUUAGAUAC) CCUA-CUAU| -GCUU-AGA- CAUAAA--ca 2521 a--GACC-UU |GC|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(caac)a u-----AAGG 2701 U-C|--C|GC C-AGAG-AAC UACAAGU(-- -GAAAA-)AC UUA--AAACU CAAAAGAC-U 2761 UG|GCGGUG- CCCCAcacCC GACUUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUA A-ACCUAACC ACCCUUCGCC ---------- ---------- 2881 (-------a- c--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-AA|A-CC UAC-|CUC(A --CAA)GAG- -----(aaa- 3181 aa-)------ c-CGUAGGUU AAA-UAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aaaac- 3781 ---------A CUAAAA-CGU C-AGGUCAAG G|UGUA|GCU AAU------- ---------G 3841 G-G-GU-GG- -G-AGA--GA -UGGGCUACA UU--CUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ac---)---- ---------- ---------- UAA-AGaa-c 4021 ---------- ------ACGG --AAAGA-AC A-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) A-CC-U--UC C---AAAAG- -GCGAAUUUA 4141 A-C--AGUAA A-acuggc(- aagaa-a--- --)gccagcu u-uA------ ---------- 4201 ---------- ---------- ---------- ---------- ---------- agcc--CGCU 4261 CUGGGG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -cacaacaaa 4381 cccac-cuaa uu--cau--a aaccccuaac aaacaaa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------a GAUG-AGG-C AAGUCGUAAC AUGGUAAG-C GCA-CU(GGA 4621 -A)AGU-GU- GCUUGGAACA ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.U.super 5213 bp RNA RNA 14-DEC-1995 DEFINITION Mitochondrion Uranoscodon superciliosus.; . ACCESSION U39562 KEYWORDS . SOURCE Mitochondrion Uranoscodon superciliosus. ORGANISM Mitochondrion Uranoscodon superciliosus. REFERENCE 1 (bases 1 to 1086) AUTHORS Titus,T.A. and Frost,D.R. TITLE family Opluridae (Squamata: Iguania) Molecular homology assessment and phylogeny in the lizard JOURNAL Mol. Phylogenet. Evol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 1086) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (27-OCT-1995) Tom A. Titus, Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U39562 BASE COUNT 342 a 237 c 164 g 185 t 4285 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uacAGUUU 661 (UGG-)U-CC U|AGACU-UG UUG-CUAUUU -U-UAAU-UA |AA-AU--UA -CAC-A-UGU 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACACCAGU GAAAC--a-G C|AAA-g--- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(caguaua -----)---- 1261 ---------- ---------- ---------- --aaCGGAGC |--------- aGGUAUCA-- 1321 -GGCACGA-- -----(aca- ---------- ---------- ---------- ------)--- 1381 ---UC|---A GCCCA--AGA C|ACUUU-GC --|------- (-cac--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)---G AAcu---C-A 1501 GCA|GUG-AU AAACAUUAAG C-AAUAAAC( gaccccaccc aacccaaa)G CUUGA-CUU| 1561 A|-GUUA-U- AA-UUA---u ucaa------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUC|-GGC 1921 -AAA-U---C UCGU-G(-CC AGCCGCC-GC -GGU-UA)-U ACGAGA|--- -GAC-CCA-- 1981 AAUAA-GCAA C-------ca aaCGGC|GUA AAUUGUGGca -u-gaau--- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------cau -uaaaccaaa ccguaa--ga c----|aaug aacc-accac c--uauca(G 2341 UAGAA)uac- ---------a ggau-a---- ---------- ---------- --aa(-aga- 2401 -)au|c---- ----accuua c-----cacc ggcca----- uuu-GAACCC ACGAA-AACU 2461 A-AGA---AA CAAACUAGG( AUUAGAUAC) CCUA-CUAU| -GCUU-AGU- UAUUAA--ua 2521 a--GACA--- |--|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(-cac)u --------UG 2701 U-C|--C|GC C-AGAG-AAU UACAAGC(-- -GAAAA-)GC UUA--AAACU CAAAAGAC-U 2761 UG|GCGGUG- CCCACac-uc aACUUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA A-ACCUGACC ACCUUUUGCC ---------- ---------- 2881 (-------ac ca-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC AC-CA|A-UC UAC-|CUC(U a-CAA)GAG- -----(aca- 3181 ca-)------ C-AGUAGGUA AAA-UAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----guuuc- 3781 ---------A CUAAAA-CAU C-AGGUCAAG G|UGUA|GCU UAU------- ---------A 3841 G-G-GU-GG- -A-AGA--GA -UGGGCUACA UU--CUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ac caa--)---- ---------- ---------- UAA-AGca-c 4021 ---------- ------ACAA --AAAGA-AG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAA---) G-CC-C--CC C---CAAAG- -GAGGAUUUA 4141 A-C--AGUAA A-acuagu(- aagaa-a--- --)acuaauu u-ua------ ---------- 4201 ---------- ---------- ---------- ---------- ---------- agcu--CGCU 4261 CUGGGG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< --aauccacc 4381 accaa-ac-c -u--aacu-a a-aacaaaca caacaaa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------a GACG-AGG-C AAGUCGUAAC AUGGUAAG-C GCA-CU(GGA 4621 -A)AGU-GU- GCUUGGAAUA ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.D.semic 5213 bp RNA RNA 11-SEP-1998 DEFINITION Mitochondrion Dinodon semicarinatus.; . ACCESSION AB0085 9 KEYWORDS . SOURCE Mitochondrion Dinodon semicarinatus. ORGANISM Mitochondrion Dinodon semicarinatus. REFERENCE 1 (sites) AUTHORS Kumazawa,Y., Ota,H., Nishida,M. and Ozawa,T. TITLE concerted evolution of control-region-like sequences duplicated and inserted into a tRNA gene cluster Gene rearrangements in snake mitochondrial genomes: highly JOURNAL Mol. Biol. Evol. 13 (9), 1242-1254 (1996) STANDARD No information REFERENCE 2 (sites) AUTHORS Kumazawa,Y., Ota,H., Nishida,M. and Ozawa,T. TITLE The complete nucleotide sequence of a snake (Dinodon semicarinatus) mitochondrial genome with two identical control regions JOURNAL Genetics 150 (1), 313-329 (1998) STANDARD No information REFERENCE 3 (bases 1 to 17191) AUTHORS Kumazawa,Y. TITLE Direct Submission JOURNAL Submitted (30-OCT-1997) to the DDBJ/EMBL/GenBank databases. Yoshinori Kumazawa, Nagoya University, Earth and Planetary Sciences; Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, Japan (E-mail:h44858a@nucc.cc.nagoya-u.ac.jp, Tel: 81-52-789-2534, Fax: 81-52-789-3033) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB008539 BASE COUNT 355 a 246 c 156 g 181 t 4275 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- cacaaGGUCU 661 (UGG-)U-CU U|AAACC-CA AUA-UUACUU -A-UACU-CC |UUaAU--UA -UAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCAUAACAGU GAAAC---AG C|CUA-Cca- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(auacag- -----)---- 1261 ---------- ---------- ---------- --cCUAGAGC |--------- aGGUAUAA-- 1321 -GGCAA---- -----(uua- ---------- ---------- ---------- ------)--- 1381 -----|---A GCCCA--UAA C|ACCAA-GC ca|------- (uauuaa)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAC--)--GG GCccg--C-A 1501 GCA|GUA-GU UAAUAUUAGG C-CAUAAGC( ---------- ----GAAA)G CUUGA-CCU| 1561 A|gCAAA-G- GA-AUU---c accuua---- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -UAA-U--cU CCGU-G(-CC AGCGACC-GC -GGU-UA)-C ACGACA|--- -GAC-CCA-- 1981 AAAUA-AUAU U--------- aaCGGC|GUA AAGCACGAcu -a-aau---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------ua gccagucuac acauua--gg a----|auaa aaucaagcug ----ggcu(G 2341 UAAAA)agcc --------au aagcca---- ---------- -------caa --ua(-aacc 2401 -)cc|a---- ----cccuaa c-----aaca aacaa----- cuu-CCACUC GUGAA-AGCU 2461 A-GGA---CC CAAACUAAG( AUUAGAUAC) CUUA-CUAU| -GCCU-AAC- CGUAA--cac 2521 a--ACAA-UA |AA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(uuac)- ----A-UGUU 2701 G-U|-uC|GC C-AAAU-AAC UACGAGU(-- -AAAA--)AC UUA--AAAUU UAAAAGAC-U 2761 UG|ACGGUA- CCCCAca-aC AACCUAGA|G GAGCCUGU-U |CAAUA--AC CG(AUACUCC 2821 A--------- ----)CGAUU A-AUCCAACC UUCCCUAGCC ---------- ---------- 2881 (-------ua c--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-GC--C |G------UC GC-CA|G-CC UAC-|CUU(A --UGA)AAG- -----(aaa- 3181 ca-)------ A-AGUAAGCC AAA-CAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacac- 3781 ---------A CUAACA-CGA C-AGGUCGAG G|UGUA|ACU CAU------- ---------G 3841 G-G-AA-GG- ac-UAG--AA -UGGGCUACA UU--AUCUa- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a cc---)---- ---------- ---------- cAG-AUaac- 4021 ---------- ------ACGG --AUAAA--C U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) a-AG-AAACU -----AAAG- -gcGGAUUUA 4141 G-C--AGUAC A-CUAUGA(- acaauaau-- --)ACCUAGU C-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------a ccaa--cgca 4261 aUGGGG-UG- CGUACACA-C -CGCCCGUCA U-CCC--UGU Ca-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< --accaacca 4381 aa--a-cacu --auauaa-- -acacaaaua aaaccua--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------a AACA-GGG-C AAGUCGUAAC ACGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUAGAAAC Aaa------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (17)-Testu 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.T.scrip 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Trachemys script. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Trachemys script. ORGANISM Mitochondrion Trachemys script. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L28077 DEFINITION Mitochondrion Trachemys script 12S ribosomal RNA; transfer RNA-Val; 16S ribosomal RNA; transfer RNA-Leu, 5' end. SOURCE Mitochondrion Trachemys scripta (organelle Mitochondrion Trachemys scripta) DNA. ORGANISM Mitochondrion Trachemys scripta Eukaryota; Animalia; Chordata; Vertebrata; Reptilia; Anapsida; Testudines; Casichelydia; Cryptodira; Testudinoidea; Emydidae. REFERENCE 1 (bases 1 to 2684) AUTHORS Hedges,S.B. TITLE Molecular evidence for the origin of birds JOURNAL Proc. Natl. Acad. Sci. U.S.A. (1994) In press COMMENT NCBI gi: 473678 FEATURES Location/Qualifiers rRNA 1..966 /product="12S ribosomal RNA" /gene="12S rRNA" /note="putative" tRNA 967..1037 /anticodon=(pos:unspecified,aa:Val) /product="transfer RNA-Val" /note="putative" rRNA 1038..2654 /product="16S ribosomal RNA" /gene="16S rRNA" /note="putative" tRNA 2655..>2684 /anticodon=(pos:unspecified,aa:Leu) /product="transfer RNA-Leu" /note="putative" source 1..2684 /organism="Mitochondrion Trachemys scripta" /mitochondrion="Mitochondrion Trachemys scripta" /sequenced_mol="DNA" BASE COUNT 358 a 233 c 167 g 208 t 4247 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAGAUU 661 (UGG-)U-CC U|AACCU-UA CUG-UUAUUU -U-UUGC-UA |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACACCAGU GAAAA---CG C|CCU-Agca -auc-u---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(aaua--- -----)---- 1261 ---------- ---------- ---a--gac- u-gAAGGAGC |--------- cGGUAUCA-- 1321 -GGCACA--- -----(ccau ga-------- ---------- ---------- ------)--- 1381 ----U|---A GCCCA--AAA C|ACCUA-GC --|------- (uuua--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG UAcu---C-A 1501 GCA|GUG-AU AAAAAUUAAG C-AAUAAGC( ---------- ----GAAA)G CUUGA-CUU| 1561 A|-GUCA-U- AG-CAA---a cau------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCU|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-C ACAAGA|--- -AGC-CCA-- 1981 AACUA-ACAG A-------ca acCGGC|GUA AAAUGUGAUU -A-aaa---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----cuuuu -aacccauaa aauuaa--gg u----|gaac uacuua-cu- ---ucgcu(g 2341 ucaua)cGCA AA-------a guauac---- ---------a uuaacacacu --au(-gaaa 2401 -)au|a---- ----accuua a----uauaa aggaacua-- uuu-GAACCC ACGAU-CGCU 2461 A-AAA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCU 2521 A--GAUA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(auac)a a---A-AAUA 2701 U-C|--C|GC C-AGAG-AAU UACGAGC(-- -AAAAC-)GC UUA--AAACU CUAAGGAC-U 2761 UG|GCGGUG- CUCAAA--CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUC U-ACCUCACC AUCUCUUGCC ---------- ---------- 2881 (-------aa c--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-AC--C |G------UC GC-CA|G-CU UAC-|CCC(G --UGA)GGA- -----(uac- 3181 aa-)------ A-AGUAAGCA AGA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --auaaacc- 3781 ---------A UUAACA-AGU C-AGGUCAAG G|UGUA|GCU AAC------- -------U-G 3841 A-G-AU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ac---)---- ---------- ---------- UAG-AAauaa 4021 cacuc----- ------ACGG --AAAGGAAC C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-AG-U--CC -A--GCAAG- -UAGGAUUUA 4141 G-C--AGUAA A-CUGGGA(- acaga-ga-- --)GCCCAAU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -acc--GGUC 4261 CUGAGG-UG- CGCACACA-C -CGCCCGUCA C-CCU--CAU Ca-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< auauacacca 4381 auaac-ccau a-aauaaac- uauagcaaau aaaac----- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------a GAUG-AGG-C AAGUCGUAAC AAGGUAAG-U GCA-CC(GGA 4621 -A)-GU-UA- ACUUGGAAUA UC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.subru 5213 bp RNA RNA 15-SEP-1998 DEFINITION Mitochondrion Pelomedusa subrufa.; . ACCESSION AF0390 6 KEYWORDS . SOURCE Mitochondrion Pelomedusa subrufa. ORGANISM Mitochondrion Pelomedusa subrufa. REFERENCE 1 (bases 1 to 16787) AUTHORS Zardoya,R. and Meyer,A. TITLE Cloning and characterization of a microsatellite in the mitochondrial control region of the African side-necked turtle, Pelomedusa subrufa JOURNAL Gene 216, 149-153 (1998) STANDARD No information REFERENCE 2 (bases 1 to 16787) AUTHORS Zardoya,R. TITLE Direct Submission JOURNAL Submitted (17-DEC-1997) Biodiversidad, Museo Nacional de Ciencias Naturales, Jose Gutierrez Abascal, 2, Madrid 28006, Spain STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF039066 BASE COUNT 340 a 238 c 173 g 217 t 4245 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --caaAGAUU 661 (UGG-)U-CC C|AGUCU-UA CUG-UUAUUU -U-UUAC-UG |AA-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGCCCCAGU GAGGAguuaa c|ccaaaa-u uacu-a---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(cuaaaca -----)---- 1261 ---------- ---------- ---u--agua a--AAGGAGU |--------- UGGUAUCA-- 1321 -GGCUCA--- -----(ucau aa-------- ---------- ---------- ------)--- 1381 ----U|---A GCCCA--AGA C|ACCUA-GC --|------- (-cau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AUuu---c-A 1501 GCA|GUG-AC AAAUAUUAAG C-CAUAAGC( ---------- ----GAAA)G CUCGA-CUU| 1561 A--UUUA-C- AG-UAA---u aca------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCU|-GGU 1921 -aaA-C---C UUGU-G(-CC AGCAACC-GC -GGC-UA)-C ACCAGG|--- -AGC-CCA-- 1981 AAACA-ACAG U-------cc uaCGGC|GUA AAUUGUGGCU -A-aga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -----c---u -aac-aaaaa aauuaa--gg u----|agac c---cuucac u--ucuuu(g 2341 uaaua)agac cg-----cgu ucaagu---- ---------- -uaucccauu --gu(-aaaa 2401 -)ac|a---- ----accuua a----cccua ccgcuua--- ucc-GAACCC ACGAU-AGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AGC- CCUAAA-CCA 2521 U--GAUA-UU |UA|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aca(uaac)a c---A-AAUA 2701 U-C|--C|GC C-CGAG-AAC UACGAGC(-- -CUACA-)GC UUA--AAACU UAAAGGAC-U 2761 UG|GCGGUG- UCCCAUa-CC CAACUAGA|G GAGCCUGU-U |CUAUA--AG CG(AUUAUCC 2821 A--------- ----)CGAUC A-ACCUUACC ACCCUUUGCC ---------- ---------- 2881 (-------au c--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-GC--C |G------UC UA-AA|G-CU CAC-|CUU(A --UGA)AAG- -----(cua- 3181 aa-)------ A-AGUAAGCA AAA-UAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --uacuaca- 3781 ---------G CUAGAA-AGU C-AGGUCCAG G|UGUA|GCC AA-------- -------U-A 3841 G-G-GU-GG- -A-UGU--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AAaua- 4021 -u-uc----- ------ACGG --ACAGA-CC C-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) A-GG-G--AC -U-AauaaG- -UUGGAUUUA 4141 G-C--AGUAA U-CUAAGA(- auaga-aa-- --)GCCUAUA U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -acc--GGCC 4261 CUGGGA-CA- AGCACACA-C -CGCCCGUCA C-Cuc--cuc aa-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< uaaacuaauc 4381 aaccc-cuua --cauaaau- -uaacaaaac auaaaa---- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------g AGAG-GAGaC AAGUCGUAAC AAGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GU- ACUUGGAAUA CC-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (15)-Amphi 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.X.lae.1 5213 bp RNA RNA ~?~???? DEFINITION Xenopus laevis. ACCESSION No information KEYWORDS No information. SOURCE Xenopus laevis. ORGANISM Xenopus laevis. REFERENCE 1 (bases 1 to 16787) AUTHORS No information JOURNAL 9759-9774(1985);updated version,Dunon-Bluteau and Brun FEBS 198: 33(1986) STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5213) Corresponding GenBank entry: M27605 Phylo:Mitochondria,Animal,Amphibian,Xenopus BASE COUNT 303 a 246 c 183 g 213 t 4268 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uAAAGGUU 661 (UGG-)U-CC U|AGCCU-UA UUA-UCAACU -U-UUUC-UG |AA-CU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACUCCCGU GAAAA---UG C|CCU-Uaag --cc-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uuaaa ca---)---- 1261 ---------- ---------- --gg--gga- --uAAGGAGC |--------- cGGUAUCA-- 1321 -GGCACa--- -----(acua a--------- ---------- ---------- ------)--- 1381 ----u|---a GCCCA--UGA C|ACCUU-GC --|------- (-ucu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAACAUUGAA c--aUGAGC( ---------- gacacaaa)G CUCGA-UUC| 1561 A|-GUUA-C- AGuAAAua-- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -CAA-U---C UCGU-G(-CC AGCCGCC-GC -GGU-UA)-U ACGAGA|--- -AAC-UCA-- 1981 AGUUG-AUCA U--------u uuCGGC|GUA AAGCGUGAUU -A-aag-|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -aa-ccca-a acuaga--gu -----|CAAA cuccaa-ccA ----AGCU(G 2341 UCGC-)CGCu u-------uc guug-guuuG AAG------- ----aacacu -cAC(-GAAA 2401 -)GU|a---- ----acucua cccauauu-a ca-------- cuu-gaacUC ACGAC-CGCU 2461 A-GGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CAUAAA-cuu 2521 u--ga----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------c uac(uuac)g c------aaa 2701 a-a|--U|-C CGCCAG-AAC UACGAGC(-- -cuaa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUACCCC 2821 U--------- ----)CGCUA A-ACCUCACC ACUUCUUGCC ---------- ---------- 2881 (-------aa ac-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-AC--C |G------UC GC-CA|G-CC CAC-|CUC(G --UGA)GAG- -----(auu- 3181 cu-)------ U-AGUAGGCU UAA-UGAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuuuc- 3781 ---------A UCAACA-CGU C-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua ccu--)---- ---------- ---------- UAG-AAUAA- 4021 ---------- ------ACGC --AAGAU-CU CUA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-CA-G--AU -C--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GAGAAA(- caaga-ga-- --)GUUCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AAC--GGCC 4261 CUGGAG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< uacaaaaau- 4381 c---a-acca auuu------ --uau----- ----aaacac acaauuaaca caa------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG-C ACA-CC(GGA 4621 -A)GGU-GU- GCUUGGAAU- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.X.lae.2 5213 bp RNA RNA 01-MAY-1998 DEFINITION Mitochondrion Xenopus laevis.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Val; tRNA-Val gene. ACCESSION Y10943 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Val; tRNA-Val gene. SOURCE Mitochondrion Xenopus laevis. ORGANISM Mitochondrion Xenopus laevis. REFERENCE 1 (bases 1 to 1317) AUTHORS Feller,A.E. and Hedges,S.B. TITLE Molecular evidence for a Salamander-Caecilian clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1317) AUTHORS Hedges,B. TITLE Direct Submission JOURNAL Submitted (03-FEB-1997) B. Hedges, Pennsylvania State University, Dept. Biology, 208 Mueller Lab., University Park, PA 16802, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y10943 BASE COUNT 308 a 244 c 183 g 211 t 4267 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---AAAGGUU 661 (UGG-)U-CC U|AGCCU-UA UUA-UCAACU -U-UUUC-UG |AA-CU--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACUCCCGU GAAAA---UG C|CCU-Uaag --cc-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uuaaa ca---)---- 1261 ---------- ---------- --gg--gga- --uAAGGAGC |--------- cGGUAUCA-- 1321 -GGCACa--- -----(acua a--------- ---------- ---------- ------)--- 1381 ----u|---a GCCCA--UGA C|ACCUU-GC --|------- (-ucu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU AAACAUUGAA c--aUGAGC( ---------- gacacaaa)G CUCGA-UUC| 1561 A|-GUUA-C- AGuAAAua-- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -CAA-U---C UCGU-G(-C- AGCCGCC-GC -GGU-UA)-U ACGAGA|--- -AAC-UCA-- 1981 AGUUG-AUCA U--------u uuCGGC|GUA AACGGUGAuu -a-aag-|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------ua acccaaac-- --uaga--gu -----|caaa cuccaa-cca ----aGCU(G 2341 UCGCA)CGCu u-------uc guug-guuuG AAG------- ----aacacu -cAC(-GAAA 2401 -)GU|a---- ----acucua cccauauu-a ca-------- cuu-gaacUC ACGAC-CGCU 2461 A-GGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CAUAAA-cuu 2521 u--ga----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------c uac(uuac)g c------aaa 2701 a-a|--U|-C CGCCAG-AAC UACGAGC(-- -cuaa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|GCGGUG- CUCCAAA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUACCCC 2821 U--------- ----)CGCUA A-ACCUCACC ACUUCUUGCC ---------- ---------- 2881 (-------aa ac-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-AC--C |G------UC GC-CA|G-CC CAC-|CUC(G --UGA)GAG- -----(auu- 3181 cu-)------ U-AGUAGGCU UAA-UGAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuuuc- 3781 ---------A UCAACA-CGU C-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua c-u--)---- ---------- ---------- UAG-AAUAA- 4021 ---------- ------ACGA --AAGAU-CU CUA(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-CA-G--AU CGAGAAAAG- -GCGGAUUUA 4141 G-C--AGUAA A-GAGAAA(- caaga-ga-- --)GUUCCUC U-UUA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- aAAC--GGCC 4261 CUGGAG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< uacaaaaau- 4381 c---a-acca auuu------ --uau----- ----aaacac acaauuaaca caa------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUACA-A GCA-CC(GGA 4621 -A)GGU-GU- GCUUGGAA-- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.muell 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Ansonia muelleri.; . ACCESSION U52740 KEYWORDS . SOURCE Mitochondrion Ansonia muelleri. ORGANISM Mitochondrion Ansonia muelleri. REFERENCE 1 (bases 1 to 880) AUTHORS Graybeal,A. TITLE Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their radiation JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 880) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52740 BASE COUNT 283 a 238 c 159 g 198 t 4335 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg acccuaaaaa guccuuuaaa caCAAAGGUU 661 (UGG-)U-CC U|AGCCU-UG AAA-UCAAUU -A-CUAC-UU |AA-UA--UA -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCCCCCCUGU GAAAA---CG C|CCU-Uuau --cu-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuucu a----)---- 1261 ---------- ---------- ---g--gaa- --aAAGGAGC |--------- cGGUAUCA-- 1321 -GGCACg--- -----(aaug -u-------- ---------- ---------- ------)--- 1381 ----c|---u GCCCA--AAA C|ACCUA-GC --|------- (-uuc--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU CAACAUUGAG A--aUAAGC( ---------- ----GCAA)G CUUGA-CUC| 1561 A|-GUCA-A- AG-UAAac-a ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCAUG|--- uGGC-UCA-- 1981 AAUUG-ACCC C------u-c ugCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -cucucccca c-uaga--gu -----|UAAA uua-aa-acu ---GAGCU(G 2341 UAACA)CGCc --------ug uuuauuaa-G AAA------- ----cucaaa -aAC(-GAAA 2401 -)GU|u---- ----acucua acacagc-cc a--------- cuu-gaacUC ACGAC-AACU 2461 A-AGA---AC CAAACUGGG( ACUAGAUAC) CCCA-CUAU| -GCCU-UAG- CUAUAA-ccu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(uuac)a ----uucaca 2701 a-u|--C|GC C-AGGG-AAC UACAAGC(-- --caa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAua-uc ccCCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUACUCC 2821 A--------- ----)CGUUU A-ACCUCACC AUUUUUAGCU ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GC-CA|G-CU UAC-|CCC(G --UGA)GCG- -----(cca- 3181 au-)------ C-AGUGAGCu aaa-uguu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---uccccc- 3781 ---------A UCAACA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------A 3841 A-A-AU-GG- AA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c au---)---- ---------- ---------- UAG-AAAAA- 4021 ---------- ------ACGA --AAAAC-UA U-U(------ ---------- ---------- 4081 ---------- --------ua UAAAA----) C-CU-A--GU -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(- ucaga-au-- --)GCCCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ncu-ggcac 4261 -UGGGG-UG- UGUACACA-C -CGCCCGUCA C-CCU--CCN C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gaagc--ua- 4381 u~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.chiri 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Atelopus chiriquiensis.; . ACCESSION U52735 KEYWORDS . SOURCE Mitochondrion Atelopus chiriquiensis. ORGANISM Mitochondrion Atelopus chiriquiensis. REFERENCE 1 (bases 1 to 877) AUTHORS Graybeal,A. TITLE Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their radiation JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 877) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52735 BASE COUNT 277 a 213 c 170 g 217 t 4336 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg accauaaaaa guccuauaaa caUAAAGGUU 661 (UGG-)U-CC U|GACCU-UG AAG-UCAAUU -A-UUAC-UU |AA-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCACCCGU GAAAA---CG C|CCU-Uaac --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cucuu a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACg--- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ----c|---u GCCCA--AAA C|ACCUA-GC --|------- (-uuu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU UAACAUUGAA U--aUUAGC( ---------- ----ACAA)G CUUGA-UUC| 1561 A|-GUUA-A- AG-UAAuucu a--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCAUG|--- uGGC-CCA-- 1981 AAUUG-UCAU C--------u auCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------c -uaauauuac uauaga--gu -----|UGAA cua-aa-acu ---AAGCU(G 2341 UGACA)CGCc --------ua cuu-cuaa-G AAA------- ----accuaa -cAC(-GAAA 2401 -)GU|u---- ----acucua gucuaau-ca a--------- cuu-gaauUC ACGAC-AGCC 2461 G-GGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-GGC- CGUAAA-cuu 2521 u--aa----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(uuac)a -----uucga 2701 a-u|--U|GC C-AGGG-AAC UACGAGC(-- --uaa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAUa-uc ccCCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUU G-ACCUCACC AUUUUCUAGC ---------- ---------- 2881 (---u---aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---c---AGC UUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- ----c(uua- 3181 acu)------ U-AGUGAGCu uaa-uguu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----auuuc- 3781 ---------A CCAACA-CGU C-AGGUCAAG G|UGCA|GUA UAU------- ---------G 3841 U-A-AU-GG- AA-AGA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uc---)---- ---------- ---------- UAG-AACAC- 4021 ---------- ------ACGA --AAAAC-UA A-A(------ ---------- ---------- 4081 ---------- --------ua UGUAA----) C-CU-A--GU -U--GGAAG- -GCGGAUUUA 4141 G-U--AGUAA AAAAGGAA(- ucaga-ac-- --)GUCCAUU U-UAC----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UCG--GCAC 4261 -UGGGG-UG- UGUACACAaC -GGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aa~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.variu 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Atelopus varius.; . ACCESSION U52736 KEYWORDS . SOURCE Mitochondrion Atelopus varius. ORGANISM Mitochondrion Atelopus varius. REFERENCE 1 (bases 1 to 813) AUTHORS Graybeal,A. TITLE radiation Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 813) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52736 BASE COUNT 261 a 193 c 154 g 200 t 4405 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg acccuaaaaa guccuauaaa caUAAAGGUU 661 (UGG-)U-CC U|GACCU-UG AAG-UCAAUU -A-UUAC-UU |AA-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCACCCGU GAAAA---CG C|CCU-Uaaa --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuccu a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACg--- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ----c|---u GCCCN--AAA C|ACCUA-GC --|------- (-uuu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU UAACAUUGAA U--aUUAGC( ---------- ----ACAA)G CUUGA-UUC| 1561 A|-GUUA-A- AG-UAAu-cu ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- AGGCN|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCAUG|--- uGGC-CCA-- 1981 AAUUG-UCUU C--------u auCNNN|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------c -uaauauuac uauaga--gu -----|UGAA cua-aa-acu ---AAGCU(G 2341 UGACA)CGCc --------ua cuu-cuaa-G AAA------- ----accuaa -uAC(-GAAA 2401 -)GU|u---- ----acucua gccuaau-ca a--------- cuu-gaauUC ACGAC-AGCC 2461 G-GGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-GGC- CGUAAC-cuu 2521 u--aa----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(uuac)a -----uucga 2701 a-u|--U|CC G-AGGG-AAC UACGAGC(-- --uaa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAUa-uc ccCCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUU G-ACCUCACC AUUUUCUAGC ---------- ---------- 2881 (---u---aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---c---AGC UUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- ----c(uua- 3181 acu)------ U-AGUGAGCu uaa-uguu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aauuc- 3781 ---------A CCAACA-CGU C-AGGUCAAG G|UGCA|GCA UAU------- ---------G 3841 U-A-AU-GG- AA-AGA--GA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- UAG-AACAC- 4021 ---------- ------ACGA --AAAAC-UA A-A(------ ---------- ---------- 4081 ---------- --------ua UGUAA----) U-CU-A--GU -U--GGAAG- -GCGGAUCUA 4141 G-U--AGUAA A-AAGGAA(~ ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.alvar 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo alvarius.; . ACCESSION U52719 KEYWORDS . SOURCE Mitochondrion Bufo alvarius. ORGANISM Mitochondrion Bufo alvarius. REFERENCE 1 (bases 1 to 849) AUTHORS Graybeal,A. TITLE alternate macroevolutionary hypotheses characterizing their radiation Phylogenetic relationships of bufonid frogs and tests of JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 849) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52719 BASE COUNT 267 a 217 c 172 g 191 t 4366 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg acccuaaaaa guccuuuaaa caCAAAGGUU 661 (UGG-)U-CC U|GGCCU-UG AGG-UCAGUU -A-UUAC-UU |AG-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAAAA---CG C|CCU-Uaaa --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuccu a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGGCAcg-- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ----c|---u GCCCA--AAA C|ACCUA-GC --|------- (-uac--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAcu---C-A 1501 GCA|GUG-AU UAACAUUGAG C--aUUAGC( ---------- ----GCAA)G CUUGA-CUC| 1561 A|-GCUA-A- AG-UAAggua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCACG|--- uGGC-UCA-- 1981 AAUUG-ACCC N--------- ucCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------c -ccc-ucccc ccuaga--gu -----|UAAA cua-aa-acu ---AAGCC(G 2341 UGACA)CGCc --------ug uuuacuaa-G AAA------- ----cucaua -aAC(-GAAA 2401 -)GU|u---- ----acucua auauaac-ca a--------- cuu-gaauUC ACGAC-AGCU 2461 G-GGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-AGC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(uuac)a -----uacaa 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --uaa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAUA-UC CCCCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 G--------- ----)CGUUU A-ACCUCACC AUUUCUAGUU ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(uca- 3181 au-)------ U-AGUGAGCC CAA-UGUC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuuc- 3781 ---------A CCAAUA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AAAAA- 4021 ---------- ------ACGA --AAAAC-UA U-C(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) C-CU-A--GU -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(- ucagc-au-- --)GUNCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGGA 4261 CUGGGG-UG- UGUACA~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.ameri 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo americanus.; . ACCESSION U52747 KEYWORDS . SOURCE Mitochondrion Bufo americanus. ORGANISM Mitochondrion Bufo americanus. REFERENCE 1 (bases 1 to 927) AUTHORS Graybeal,A. TITLE Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their radiation JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 927) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52747 BASE COUNT 287 a 225 c 179 g 222 t 4300 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- -cccuaaaaa guccuuuaga caCAAAGGUU 661 (UGG-)U-CC U|GGCCU-UG AGG-UCAGUU -A-UUAC-UU |AG-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAAAA---CG C|CCU-Uuaa --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuuuu a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACg--- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ----c|---u GCCCA--AAA C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU UAACAUUGAG C--aUUAGC( ---------- ----GAAA)G CUUGA-CUC| 1561 A|-GUUA-A- AG-UAAaaua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCACG|--- uGGC-UCA-- 1981 AAUUG-ACCU C--------c ucCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -uucuucaua c-uaga--gu -----|UAAA cua-aa-acu ---AAGCU(G 2341 UGACA)CGCc --------ug uuuacuaa-G AAA------- ----cccaag -aAC(-GAAA 2401 -)GU|u---- ----acucua ucauaac-ca a--------- cuu-gaauUC ACGAC-AGCU 2461 A-GGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --n(nnnn)n ----nnnnnn 2701 n-n|--C|GC C-AGGG-AAC UACGAGC(-- --caa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAua-uc caCCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUU A-ACCUCACC AUUUUUAGUU ---------- ---------- 2881 (-------ac u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(uca- 3181 au-)------ U-AGUGAGCu uaa-uguu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuuc- 3781 ---------A CCAAUA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- UAG-AAGAA- 4021 ---------- ------ACGG --AAAAC-UA C-C(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) U-CU-A--GU -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(- ucagc-au-- --)AUCCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -Ccc-ggcac 4261 -UGGGG-UG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaagcuaa-- 4381 ucuaa-ucua gu-------- -ucuua---- --------ac aua-uuaaag ccuuac---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUG~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.asper 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo asper.; . ACCESSION U52733 KEYWORDS . SOURCE Mitochondrion Bufo asper. ORGANISM Mitochondrion Bufo asper. REFERENCE 1 (bases 1 to 936) AUTHORS Graybeal,A. TITLE Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their radiation JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 936) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52733 BASE COUNT 303 a 239 c 178 g 205 t 4288 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg accuuaaaaa guccuuuaaa caCAAAGGUU 661 (UGG-)U-CC U|AACCU-UG AAG-UCAGUU -U-UUAC-UU |AA-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAAAA---CG C|CCUcUaa- --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuaau a----)---- 1261 ---------- ---------- ---g--gga- --aAAGGAGC |--------- cGGUAUCA-- 1321 -GGCACg--- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ----c|---u GCCCA--AGA C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG ACuu---C-A 1501 GCA|GUG-AU UAACAUUGAA U--aUUAGC( ---------- ----GCAA)G CUUGA-AUC| 1561 A|-GUUA-A- AG-UAAa-ua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCAUG|--- uGGC-UCU-- 1981 AAUUG-ACUU C--------u c-CGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------c -cacccccuc acuaga--gu -----|UAAA cua-aa-acu ---AAGCU(G 2341 UGACA)CGCc --------ug uuuauuaagG AAA------- ----uccaaa -aAC(-GAAG 2401 -)GU|u---- ----acucua acacaac-ca a--------- cuu-gaauUC ACGAC-AGCU 2461 G-GGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-AAC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(uuac)a -----gccaa 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --uaa--)GC UUA--AAACC NNNAGGAC-U 2761 UG|ACGGUA- CCCNNAA-AU CCCCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUNN 2821 N--------- ----)CGUUU A-ACCUCACC ACUUUUAGCC ---------- ---------- 2881 (-------aa c--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CCC(G --UGA)GCG- -----(uca- 3181 au-)------ U-AGUGAGCc caa-uguu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aauuc- 3781 ---------A CCAAUA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-GU-GG- GA-AGA--GA -UGGGCUACA CU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u gu---)---- ---------- ---------- UAG-AAAAA- 4021 ---------- ------ACGA --AAAAC-UA C-C(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) C-CU-A--GU -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(- ucagc-au-- --)AUCCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCA 4261 -CUGGG-UG- UGUACACNNC -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaagcu--a- 4381 uaa-a-caua gc-------- -cccca---- --------ac aaa-cccaaa caugac---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A NAAG-AGG-C AAGUCGUAAC AUGGUAAG~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.bipor 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo biporcatus.; . ACCESSION U52732 KEYWORDS . SOURCE Mitochondrion Bufo biporcatus. ORGANISM Mitochondrion Bufo biporcatus. REFERENCE 1 (bases 1 to 935) AUTHORS Graybeal,A. TITLE radiation Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 935) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52732 BASE COUNT 300 a 230 c 181 g 216 t 4286 others ORIGIN 1 |~-------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gauga acccuaaaaa guucuuuaaa caCAAAGGCU 661 (UGG-)U-CC C|AGCCU-UG AAG-UCAGUU -A-UUAC-UU |AA-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCUCCCGU GAAAA---CG C|CCU-Uaaa --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--ccucc a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACu--- -----(acaa -c-------- ---------- ---------- ------)--- 1381 ----u|---a GCCCA--AGA C|ACCUA-GC --|------- (-uac--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAcu---C-A 1501 GCA|GUG-AU UAACAUUGAG C--aUUAGC( ---------- ----GAAA)G CUUGA-CUC| 1561 A|-GUUA-A- AG-UAGaaca ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCACG|--- uGGC-UCA-- 1981 AAUUG-ACCU U--------a uuCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -cau-auuau acuagg--gc -----|UGAA cua-aa-auu ---GAGCU(G 2341 UGACA)CGCc --------ua uuu-uuaa-G AAA------- ----cucaga -aAC(-GAAG 2401 -)GU|u---- ----acccua auacaac-ca a--------- cuu-gaauUC ACGAC-AGCU 2461 G-GGG---AA CAAACUGGG( AUUAAAUAC) CCCA-CUAU| -GCCC-AGC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(uuac)a -----ccuaa 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --uaa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUAu UCCCAAa-uc c-CCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUCU A-ACCUCACC ACUUUUAGUU ---------- ---------- 2881 (-------aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(uuu- 3181 cu-)------ U-AGUGAGCu uaa-uguu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuuc- 3781 ---------a CCAAUA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-GU-GG- AA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- UAG-AAAAG- 4021 ---------- ------ACGA --AAAAC-UA C-U(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) C-CU-A--GU -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(- ucagc-au-- --)GUCCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCA 4261 -CUGGG-UG- UGUACACuaC -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaagcc--a- 4381 aannn-na-a gu-------- -cuuua---- --------ac aaa-uaaagg caunac---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A NAAG-AGG-C AAGUCGUANC AUGNUAAG-U ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.bocou 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo bocourti.; . ACCESSION U52724 KEYWORDS . SOURCE Mitochondrion Bufo bocourti. ORGANISM Mitochondrion Bufo bocourti. REFERENCE 1 (bases 1 to 929) AUTHORS Graybeal,A. TITLE radiation Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 929) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52724 BASE COUNT 296 a 240 c 179 g 214 t 4284 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg acccuaaaaa guccuuuaaa caCAAAGGUU 661 (UGG-)U-CC U|GGCCU-UG AAG-UCAGUU -A-UUAC-UU |AG-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAAAA---CG C|CCU-Uuaa --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuucu a----)---- 1261 ---------- ---------- ---g--gaa- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACg--- -----(aaau -u-------- ---------- ---------- ------)--- 1381 ----c|---u GCCCA--AAA C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU UAACAUUGAG C--aUUAGC( ---------- ----GAAA)G CUUGA-CUC| 1561 A|-GUUA-A- AG-UAAgaua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCACG|--- uGGC-UCA-- 1981 AAUUG-ACCC C--------c ucCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -uac-uucuu acuaga--gu -----|UAAA cua-ua-acu ---AAGCU(G 2341 UGACA)CGCc --------ug uuuaccaa-G AAA------- ----cccaua -aAC(-GAAA 2401 -)GU|u---- ----acucua acacaac-ca a--------- cuu-gaacUC ACGAC-AGCU 2461 G-GGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-AGC- CGUAAA-cuu 2521 u--aa----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(uuac)a -----uccaa 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --uaa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAUa-UC CCCCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUU A-ACCUCACC AUUUCUAGUU ---------- ---------- 2881 (-------aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(cca- 3181 au-)------ U-AGUGAGCU UAA-UGUU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuuc- 3781 ---------A CCAACA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AAGAA- 4021 ---------- ------ACGA --AAAAC-UA C-C(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) C-CU-A--GU -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(- ucagc-au-- --)GUCCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCA 4261 cUGGGG-UG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaagcuc-u- 4381 uaacc--c-a gu-------- -uuuua---- --------ac uaa-cuaaag caccac---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AU~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.bor.1 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo boreas.; . ACCESSION U52702 KEYWORDS . SOURCE Mitochondrion Bufo boreas. ORGANISM Mitochondrion Bufo boreas. REFERENCE 1 (bases 1 to 946) AUTHORS Graybeal,A. TITLE Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their radiation JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 946) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52702 BASE COUNT 301 a 230 c 187 g 225 t 4270 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg acccuaaaaa guccuuuaga caCAAAGGUU 661 (UGG-)U-CC U|GGCCU-UG AGG-UCAGUU -A-UUAC-UU |AG-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAAAA---CG C|CCU-Uuaa --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuuuu a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACg--- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ----c|---u GCCCA--AAA C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU UAACAUUAAG U--aUUAGC( ---------- ----GAAA)G CUUGA-CUU| 1561 A|-GCUA-A- AG-UAAgaca ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCACG|--- uGGC-UCA-- 1981 AAUUG-ACCC C--------c ucCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------c -uau-auucu ucuaga--gu -----|UAAA cua-aa-acu ---AAGCU(G 2341 UGACA)CGCu --------ug uuuu-uaa-G AAA------- ----cccaaa -aAC(-GAAA 2401 -)GU|u---- ----acucua uucuaac-ca a--------- cuu-gaauUC ACGAC-AGCU 2461 G-GGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-AGC- CAUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(uuac)a a----cuuaa 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --caa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCACA-UC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUU A-ACCUCACC AUUUUUAGUU ---------- ---------- 2881 (-------aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(cca- 3181 au-)------ U-AGUGAGCU UAA-UGUU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuuc- 3781 ---------A CCAAUA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AAAAU- 4021 ---------- -----ANCGA --AAAAC-UA U-U(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) C-CU-A--GU -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(- ucagc-au-- --)AUUCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCA 4261 CUGGGG-UG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaagccauc- 4381 ---ag-ccua gu-------- -unnua---- --------ac aac-uaaggg cgucac---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG-U AUA-CC(GGA 4621 -A)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.bor.2 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo boreas.; . ACCESSION U52703 KEYWORDS . SOURCE Mitochondrion Bufo boreas. ORGANISM Mitochondrion Bufo boreas. REFERENCE 1 (bases 1 to 833) AUTHORS Graybeal,A. TITLE alternate macroevolutionary hypotheses characterizing their radiation Phylogenetic relationships of bufonid frogs and tests of JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 833) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52703 BASE COUNT 262 a 195 c 163 g 202 t 4391 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg ncccaaaaag auccuuuaga naCAAAGGUU 661 (UGG-)U-CC U|GGCCU-UG AGG-UCAGUU -A-UUAC-UU |AG-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAAAA---CG C|CCU-Uuaa --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuuuu a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACg--- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ----c|---u GCCCA--AAA C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU UAACAUUAAG U--aUUAGC( ---------- ----GAAA)G CUUGA-CUU| 1561 A|-GCUA-A- AG-UAAgaca ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCACG|--- uGGC-UCA-- 1981 AAUUG-ACCC C--------c ucCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------c -uau-auucu ucuaga--gu -----|UAAA cua-aa-acu ---AGGCU(G 2341 UGACA)CGCu --------ug uuuu-uaa-G AAA------- ----uccaaa -aAC(-GAAA 2401 -)GU|u---- ----acucua uuuuaac-ca a--------- cuu-gaauUC ACGAC-AGCU 2461 G-GGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-AGC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(uuac)a a----cuuaa 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --caa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAUA-UC CACCUAGA|G GAGCCUGU-C |CUAUA--AN NG(AUAAUCC 2821 A--------- ----)CGUUU A-ACCUCACC AUUUUUAGUU ---------- ---------- 2881 (-------aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(cca- 3181 au-)------ U-AGUGAGCU UAA-UGUU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuuc- 3781 ---------A CCAAUA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AAAAU- 4021 ---------- ------ACGA --AAAAC-UN C-U(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) C-CU-A--GU -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(- ucagc-un-- --)NNNNNUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GG~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.bor.3 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo boreas.; . ACCESSION U52704 KEYWORDS . SOURCE Mitochondrion Bufo boreas. ORGANISM Mitochondrion Bufo boreas. REFERENCE 1 (bases 1 to 942) AUTHORS Graybeal,A. TITLE Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their radiation JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 942) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52704 BASE COUNT 281 a 222 c 181 g 219 t 4310 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg gcccuaaaaa guccuuuaga caCAAAGGUU 661 (UGG-)U-CC U|GGCCU-UG AGG-UCAGUU -A-UUAC-UU |AG-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAAAA---CG C|CCU-Uuaa --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuuuu a----)---- 1261 ---------- ---------- ---g--gca- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACg--- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ----c|---u GCCCA--AAA C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU UAACAUUAAG U--aUUAGC( ---------- ----GAAA)G CUUGA-CUU| 1561 A|-GCUA-A- AG-UAAgaca ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCACG|--- uGGC-UCA-- 1981 AAUUG-ACCC C--------c ucCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------c -uau-auucu ucuaga--gu -----|UAAA cua-aa-acu ---AGGCU(G 2341 UGACA)CGCu --------ug uuuu-uaa-G AAA------- ----uccaaa -aAC(-GAAA 2401 -)GU|u---- ----acucua uuuuaac-ca a--------- cuu-gaauUC ACGAC-AGCU 2461 G-GGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-AGC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(uuac)a a----cuuaa 2701 a-u|--C|GC C-AGGG-ANC UACGAGC(-- --caa--)GC UUA--AAANC CNAAGGAC-U 2761 UG|NCGUAC- CCCNNAN-CC ACNNNNNN|N NNNNNNNN-N |NNNNN--NN NN(NNNNNCC 2821 A--------- ----)CGUUU N-NCCUCACC AUUUUUAGUU ---------- ---------- 2881 (-------aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(cca- 3181 au-)------ U-AGUGAGCU UAA-UGUU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuuc- 3781 ---------A CCAAUA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AAAAU- 4021 ---------- ------ACGA --AAAAC-UA C-U(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) C-CU-A--GU -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(- ucagc-au-- --)AUUCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCA 4261 CUGGGG-UG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaagccauc- 4381 ---ag-ccua gu-------- -uuuua---- --------ac aac-uaaggg cgucac---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG-U AUA-CC(G~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.bor.4 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo boreas.; . ACCESSION U52705 KEYWORDS . SOURCE Mitochondrion Bufo boreas. ORGANISM Mitochondrion Bufo boreas. REFERENCE 1 (bases 1 to 923) AUTHORS Graybeal,A. TITLE radiation Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 923) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52705 BASE COUNT 289 a 227 c 181 g 225 t 4291 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg acccuaaaaa guccuuuaga caCAAAGGUU 661 (UGG-)U-CC U|GGCCU-UG AGG-UCAGUU -A-UUAC-UU |AG-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAAAA---CG C|CCU-Uuaa --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuuuu a----)---- 1261 ---------- ---------- ---g--gca- --cAAGGAGC |--------- uCCUAUCA-- 1321 -GGCACg--- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ----c|---u GCCCA--AAA C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU UAACAUUAAG U--aUUAGC( ---------- ----GAAA)G CUUGA-CUU| 1561 A|-GCUA-A- AG-UAAgaca ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCACG|--- uGGC-UCA-- 1981 AAUUG-ACCC C--------- ucCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------c -uau-auucu ucuaga--gu -----|UAAA cua-aa-acu ---AGGCU(G 2341 UGACA)CGCu --------ug uuuu-uaa-G AAA------- ----uccaaa -aAC(-GAAA 2401 -)GU|u---- ----acucua uuuuaac-ca a--------- cuu-gaauUC ACGAC-AGCU 2461 G-GGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-AGC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(uuac)a a----cuuaa 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --caa--)GC UUA--AANCC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAUA-UC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUU A-ACCUCACC AUUUUUAGUU ---------- ---------- 2881 (-------aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(cca- 3181 au-)------ U-AGUGAGCU UAA-UGUU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuuc- 3781 ---------A CCAAUA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AAAAU- 4021 ---------- ------ACGA --AAAAC-UA C-U(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) C-CU-A--GU -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(- ucagc-au-- --)AUUCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCA 4261 CUGGGG-UG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaagccauc- 4381 ---ag-ccua gu-------- -uuuua---- --------ac aac-uaaggg cgucac---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGU~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.calam 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo calamita.; . ACCESSION U52726 KEYWORDS . SOURCE Mitochondrion Bufo calamita. ORGANISM Mitochondrion Bufo calamita. REFERENCE 1 (bases 1 to 954) AUTHORS Graybeal,A. TITLE radiation Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 954) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52726 BASE COUNT 300 a 238 c 194 g 215 t 4266 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~~)~~CC U|AGCCU-CG GAG-UCAGAU -A-UUAN-UU |AG-UA--UA -CAC-A-UNC 721 -ANGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGN GAAAA---CG N|CCU-Uuau --gc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--ccacu a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGY |--------- cGGUAUCA-- 1321 -GGCACg--- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ----c|---u GCCca--agA C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU UAACAUUGAG c--aUUAGC( ---------- ----GCAA)G CUUGA-CUC| 1561 A|-GUUA-A- AG-UAAaaca ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCAUG|--- uGGC-UCA-- 1981 AAUUG-AUCU C--------c ucCGGC|GUA AAGCGUGAUU -A-aag-|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------c -uac-ccccu ucuaga--gu -----|AAAA cug-aa-acu ---GAGCU(G 2341 UGACA)CGCc --------ug uua-ucaa-G AAA------- ----aucaaa -aAC(-GAAA 2401 -)GU|c---- ----acucua acacaau-cg a--------- cuu-gaacUC ACGAC-AGCU 2461 A-GGG---AA CAANCUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(uuac)a -----cucaa 2701 a-c|--C|GC C-AGGG-AAC UACGAGC(-- --aaa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAUA-UC CCCCUAGA|G GAGCCUGU-C |CUGUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUU A-ACCUCACC AUUUCUAGUU ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(ccu- 3181 au-)------ U-AGUGAGCU UAA-UGUU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------a (------)-- -----uuuc- 3781 ---------A CCAACA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-GU-GG- GA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AAGAA- 4021 ---------- ------ACGA --AAAAC-UA U-U(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) A-CU-A--GU -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(- ucagc-au-- --)GUCCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCA 4261 CUGGGG-UG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaggcacug- 4381 a---c-aua- gu-------- -uuuua---- --------ac uaa-cuuaag caaaac---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG-U AUA-CC(GGA 4621 -A)GGU-GU- GCUUGGAAAC ---------| gcaauguagc uuaacaaaag ccucucacuu 4681 acac------ ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.canor 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo canorus.; . ACCESSION U52707 KEYWORDS . SOURCE Mitochondrion Bufo canorus. ORGANISM Mitochondrion Bufo canorus. REFERENCE 1 (bases 1 to 939) AUTHORS Graybeal,A. TITLE alternate macroevolutionary hypotheses characterizing their radiation Phylogenetic relationships of bufonid frogs and tests of JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 939) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52707 BASE COUNT 298 a 225 c 186 g 228 t 4276 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg acccuaaaaa guccuuuaga caCAAAGGUU 661 (UGG-)U-CC U|GGCCU-UG AGG-UCAGUU -A-UUAC-UU |AG-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAAAA---CG C|CCU-Uuaa --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuuuu a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACg--- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ----c|---u GCCCA--AAA C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU UAACAUUAAG U--aUUAGC( ---------- ----GAAA)G CUUGA-CUU| 1561 A|-GCUA-A- AG-UAAgaca ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCACG|--- uGGC-UCA-- 1981 AAUUG-ACCC C--------c ucCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------c -uau-auucu ucuaga--gu -----|UAAA cua-aa-acu ---AAGCU(G 2341 UGACA)CGCu --------ug uuuu-uaa-G AAA------- ----cccaaa -aAC(-GAAA 2401 -)GU|u---- ----acucua uuuuaac-ca a--------- cuu-gaauUC ACGAC-AGCU 2461 G-GGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-AGC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(uuac)a a----cuuaa 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --caa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAUA-UC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUU A-ACCUCACC AUUUUUAGUU ---------- ---------- 2881 (-------aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(cca- 3181 au-)------ U-AGUGAGCU UAA-UGUU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuuc- 3781 ---------A CCAAUA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u gu---)---- ---------- ---------- UAG-AAAAU- 4021 ---------- ------ACGA --AAAAC-UA C-U(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) C-CU-A--GU -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGAAA(- ucagc-au-- --)AUUCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCA 4261 CUGGGG-UG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaagcnauc- 4381 ---ag-ccua gu-------- -uuuua---- --------ac aac-uaaagg ngucac---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG-U AUA-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.cog.1 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo cognatus.; . ACCESSION U52714 KEYWORDS . SOURCE Mitochondrion Bufo cognatus. ORGANISM Mitochondrion Bufo cognatus. REFERENCE 1 (bases 1 to 938) AUTHORS Graybeal,A. TITLE alternate macroevolutionary hypotheses characterizing their radiation Phylogenetic relationships of bufonid frogs and tests of JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 938) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52714 BASE COUNT 292 a 230 c 182 g 227 t 4282 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg acccuaaaaa guccuuuaga caCAAAGGUU 661 (UGG-)U-CC U|GGCCU-UG AGG-UCAGUU -A-UUAC-UU |AG-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAAAA---CG C|CCU-Uuaa --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuucu a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- UGGUAUCA-- 1321 -GGCACu--- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ----u|---u GCCCA--AGA C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU UAACAUUGAG C--aUUAGC( ---------- ----GAAA)G CUUGA-CUC| 1561 A|-GUUA-A- AG-UAAgaua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCACG|--- uGGC-UCA-- 1981 AAUUG-ACCC C--------c ucCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -uac-uucac ucuaga--gu -----|UAAA cua-aa-acu ---AAGCU(G 2341 UGACA)CGCc --------ug uuuguuaa-G AAA------- ----uccaaa -aAC(-GAAA 2401 -)GU|u---- ----acucua ucauaau-ca a--------- cuu-gaauUC ACGAC-AGCU 2461 A-GGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(uuac)a -----cccaa 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --caa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAUA-UC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUU A-ACCUCACC AUUUUUAGUU ---------- ---------- 2881 (-------ac u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(uca- 3181 au-)------ U-AGUGAGCU UAA-UGUU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuuc- 3781 ---------A CCAAUA-CGU C-AGNUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- UAG-AAGAA- 4021 ---------- ------ACGG --AAAAC-UA C-C(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) C-CU-A--GU -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(- ucagc-au-- --)AUCCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--NNNN 4261 CUGGGG-UG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaagcuauc- 4381 -auaa-ucua gu-------- -cuuua---- --------ac aca-cuaaag ccunac---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GANG-AGG-C AAGUCGUAAC AUGGUAAG-U ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.cog.2 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo cognatus.; . ACCESSION U52711 KEYWORDS . SOURCE Mitochondrion Bufo cognatus. ORGANISM Mitochondrion Bufo cognatus. REFERENCE 1 (bases 1 to 940) AUTHORS Graybeal,A. TITLE alternate macroevolutionary hypotheses characterizing their radiation Phylogenetic relationships of bufonid frogs and tests of JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 940) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52711 BASE COUNT 291 a 229 c 183 g 223 t 4287 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg acccuaaaaa guccuuuaga caCAAAGGUU 661 (UGG-)U-CC U|GGCCU-UG AGG-UCAGUU -A-UUAC-UU |AG-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAAAA---CG C|CCU-Uuaa --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuucu a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACu--- -----(aaau -u-------- ---------- ---------- ------)--- 1381 ----u|---- GCCCA--AGA C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU UAACAUUGAG C--aUUAGC( ---------- ----GAAA)G CUUGA-CUC| 1561 A|-GUUA-A- AG-UAAgaua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCACG|--- uGGC-UCA-- 1981 AAUUG-ACCC C--------c ucCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -uac-uucac ucuaga--gu -----|UAAA cua-aa-acu ---AAGCU(G 2341 UGACA)CGCc --------ug uuuguuaa-G AAA------- ----uccaaa -aAC(-GAAA 2401 -)GU|u---- ----acucua ucauaau-ca a--------- cuu-gaauUC ACGAC-AGCU 2461 A-GGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(uuac)a -----cccaa 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --caa--)GC UUA--AACCC NAAAGGAC-U 2761 UG|ACGGUA- CCCCNUA-UC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUU A-ACCNCACC AUUUNUAGUU ---------- ---------- 2881 (-------ac u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---ANN CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(uca- 3181 au-)------ U-AGUGAGCU UAA-UGUU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuuc- 3781 ---------N CCAAUA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--GA -UGGGCUACA CN--NUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- UAG-AAGAA- 4021 ---------- ------ACGG --AAAAC-UN N-C(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) C-CU-A--GU -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(- ucagc-au-- --)AUCCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCN--GNCA 4261 CUGGGG-UG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaagcuauc- 4381 -auaa-ucua gu-------- -cunua---- --------ac aca-cuaaag ccuuac---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG-U AUA-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.debil 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo debilis.; . ACCESSION U52715 KEYWORDS . SOURCE Mitochondrion Bufo debilis. ORGANISM Mitochondrion Bufo debilis. REFERENCE 1 (bases 1 to 937) AUTHORS Graybeal,A. TITLE alternate macroevolutionary hypotheses characterizing their radiation Phylogenetic relationships of bufonid frogs and tests of JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 937) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52715 BASE COUNT 287 a 243 c 183 g 212 t 4288 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg ncccuaaaaa guccuuuaaa cnCAAAGGUU 661 (UGG-)U-CC U|GGCCU-UG AGG-UCAGUU -A-UUAC-UU |AG-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAAAA---CG C|CCU-Uuaa --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuucu a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACu--- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ----u|---u GCCCA--AGA C|ACCUA-GC --|------- (-uuu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU UAACAUUGAG C--aUUAGC( ---------- ----GAAN)G CUUGA-CUC| 1561 A|-GUUA-A- AG-UAAgaua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GN -NGU-UA)-C ACCACG|--- uGGC-UCA-- 1981 AAUUG-ACCC C--------c ucCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -ccc-cucau acuaga--gu -----|UAAA cug-aa-acu ---AAGCU(G 2341 UGACA)CGCu --------ug uuuaccaa-G AAA------- ----cccaaa -aAC(-GAAA 2401 -)GU|u---- ----acucua nuacaac-ca a--------- cuu-gaacUC ACGAC-AGCU 2461 A-GGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(ucac)g -----cccaa 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --caa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCACA-UC CACCUAGA|G GAGCCUNN-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUU A-ACCUCACC AUUUCUAGUU ---------- ---------- 2881 (-------ac u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(cua- 3181 au-)------ U-AGUGAGCC UAA-UGUU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cuuc- 3781 ---------A CCAAUA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--GA -UGGGCUACA CU--UUNNN- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c cu---)---- ---------- ---------- UAG-AAGAG- 4021 ---------- ------ACGA --AAAAC-UA U-C(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) C-CU-A--GU -U--AGAAG- -GCGGAUUUA 4141 G-C--ANUAA A-AAGGAA(- ucagc-au-- --)GUCCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCA 4261 CUGGGG-UG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaagcuucu- 4381 --aug-ucua gu-------- -ucuua---- --------ac aaa-cuaaag ccccac---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG-U ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.exsul 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo exsul.; . ACCESSION U52706 KEYWORDS . SOURCE Mitochondrion Bufo exsul. ORGANISM Mitochondrion Bufo exsul. REFERENCE 1 (bases 1 to 926) AUTHORS Graybeal,A. TITLE radiation Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 926) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52706 BASE COUNT 291 a 223 c 183 g 224 t 4292 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ----uuuaga cuUAAAGGUU 661 (UGG-)U-CC U|GGCCU-UG AGG-UCAGUU -A-UUNC-UU |AG-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------aun c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAAAA---CG C|CCU-Uuaa --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuuuu a----)---- 1261 ---------- ---------- ---g--gna- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACg--- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ----c|---u GCCCA--AAA C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU UAACAUUAAG U--aUUAGC( ---------- ----GAAA)G CUUGA-CUU| 1561 A|-GCUA-A- AG-UAAgaca ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCACG|--- uGGC-UCA-- 1981 AAUUG-ACCC C--------c ucCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------c -uau-auucu ucuaga--gu -----|UAAA cua-aa-acu ---AAGCU(G 2341 UGACA)CGCu --------ug uuuu-uaa-G AAA------- ----cccaaa -aAC(-GAAA 2401 -)GU|u---- ----acucua uuuuaac-ca a--------- cuu-gaauUC ACGAC-AGCU 2461 G-GGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-AGC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(uuac)a a----cuuaa 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --caa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCACA-UC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUU A-ACCUCACC AUUUUUAGUU ---------- ---------- 2881 (-------aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(cca- 3181 au-)------ U-AGUGAGCU UAA-UGUU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuuc- 3781 ---------A CCAAUA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AAAAU- 4021 ---------- ------ACGA --AAAAC-UA C-C(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) C-CU-A--GU -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(- ucagc-au-- --)ANNCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCA 4261 CUGGGG-UG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaagccauc- 4381 ---ag-ccua gu-------- -uuuua---- --------ac aac-uaaggg cgucac---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG-U AUA-UC(GGA 4621 -A)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.fasti 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo fastidiosus.; . ACCESSION U52748 KEYWORDS . SOURCE Mitochondrion Bufo fastidiosus. ORGANISM Mitochondrion Bufo fastidiosus. REFERENCE 1 (bases 1 to 939) AUTHORS Graybeal,A. TITLE Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their radiation JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 939) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52748 BASE COUNT 299 a 250 c 183 g 206 t 4275 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg ccccuaaaaa guccuuuaaa caCAAAGGUU 661 (UGG-)U-CC U|AACCU-UG AAG-UCAGUU -A-UUAC-UU |AG-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAAAA---CG C|CCU-Uaaa --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cccau a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACg--- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ---uc|---u GCCCA--AAA C|ACCUA-GC --|------- (-uac--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU UAACAUUGAG C--aUUAGC( ---------- ----GCAA)G CUUGA-CUC| 1561 A|-GCUA-A- AG-UAAgaca ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCAUG|--- uGGC-UCA-- 1981 AAUUG-ACCC C------c-c ucCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -uau-uuuaa acuaga--gc -----|UAAA cua-aa-auu ---AAGCU(G 2341 UGACA)CGCc --------ua uuc-uuaa-G AAA------- ----cccaaa -aAC(-GAAA 2401 -)GU|u---- ----acucua cgc-aac-ca a--------- cuu-gaauUC ACGAC-AGCU 2461 G-GGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-AGC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cuac)a -----cccaa 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --uaa--)GC UUA--AANCC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAca-uc ccCCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUG A-ACCUCACC AUUUCUAGUU ---------- ---------- 2881 (-------uu u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GC-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(cca- 3181 au-)------ U-AGUGAGCc uaa-ugcu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuuc- 3781 ---------A CCAACA-CGU C-AGGUCAAG G|UGCA|GUA AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c au---)---- ---------- ---------- UAG-AAGAA- 4021 ---------- ------ACGA --AAAAC-UA C-C(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) C-CU-A--GU -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(- ucagc-ac-- --)GUCCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -Ccc-ggcac 4261 -UGGGG-UG- UGUACACA-C -CGCCCGUCA C-CCA--CAA C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaagcugc-- 4381 --caa-ccca gu-------- -uccua---- --------ac uaa-uuuuug cucaac---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG-U AUA-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.garga 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo gargarizans.; . ACCESSION U52720 KEYWORDS . SOURCE Mitochondrion Bufo gargarizans. ORGANISM Mitochondrion Bufo gargarizans. REFERENCE 1 (bases 1 to 871) AUTHORS Graybeal,A. TITLE alternate macroevolutionary hypotheses characterizing their radiation Phylogenetic relationships of bufonid frogs and tests of JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 871) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52720 BASE COUNT 270 a 228 c 176 g 195 t 4344 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg gcccuaaaaa guccuuuaaa caCAAAGGUU 661 (UGG-)U-CC U|GGCCU-UG UGG-UCAGUU -A-UUAC-UU |AC-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAAAA---CG C|CCU-Ucaa --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--ccauu a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- cGGUAUCA-- 1321 -GGCGCg--- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ----c|---c UCCCA--AGA C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU UAACAUUGAG C--aUUAGC( ---------- ----GCAA)G CUUGA-CUC| 1561 u-aGUUA-A- AG-UA-uaga ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCACG|--- uGGC-UCA-- 1981 AAUUG-ACCC C--------c ucCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -uuc-caccu acuaga--gu -----|UAAA cua-aa-acu ---AAGCU(G 2341 UGACA)CGCc --------ug uuau-caa-G AAA------- ----cccaga -aNC(-GAAA 2401 -)GU|u---- ----acucua acacaac-ca a--------- cuu-gaacUC NCGAC-AGCU 2461 G-GGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-AGC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(uuac)a ------uuga 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --uaa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAUA-UC CCCCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUA A-ACCUCACC ACUUUUAGUU ---------- ---------- 2881 (-------ac u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(cua- 3181 au-)------ U-AGUGAGCU UAA-UGUA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uauuc- 3781 ---------A CCAACA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-GU-GG- AA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a au---)---- ---------- ---------- UAG-AAGAA- 4021 ---------- ------ACGA --AAAAC-UA U-C(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) C-CU-A--GU -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(- ucagc-ac-- --)GUCCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCA 4261 CUGGGG-UG- UGUACACA-A -CGGCCGUCA --CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaag~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.garie 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo gariepensis.; . ACCESSION U52731 KEYWORDS . SOURCE Mitochondrion Bufo gariepensis. ORGANISM Mitochondrion Bufo gariepensis. REFERENCE 1 (bases 1 to 943) AUTHORS Graybeal,A. TITLE Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their radiation JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 943) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52731 BASE COUNT 306 a 231 c 181 g 225 t 4270 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gauga acccuaaaaa guucuuuaga caCAAAGAUU 661 (UGG-)U-CC U|GAUCU-UG AAG-UCAGUU -A-UUAC-UU |AA-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAAAA---CG C|CCU-Uaaa --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuucu a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACg--- -----(acaa -u-------- ---------- ---------- ------)--- 1381 ----c|---u GCCCA--AAA C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAau---C-A 1501 GCA|GUG-AU UAACAUUGAG C--aUUAGC( ---------- ----GCAA)G CUUGA-CUC| 1561 A|-GUUA-A- AG-UAAgaua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCAUG|--- uGGC-UCA-- 1981 AAUUG-ACCU C--------c ucCGGC|GUA AAACGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -uauuccccc acuaga--gu -----|UAAA uua-aa-acu ---AAGCU(G 2341 UGACA)CGCc --------ug uuua-uca-G AAA------- ----cccgaa -aAC(-GAAA 2401 -)GU|u---- ----acucua auuuaau-ca a--------- cuu-gaauUC ACGAC-AGCU 2461 G-GGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-AGC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(uuac)a ----uccaaa 2701 u-u|---|GC C-UGGG-AAC UACGAGC(-- --uaa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAUa-UC CCCCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUU A-ACCUCACC AUUUUUAGUU ---------- ---------- 2881 (-------aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(cca- 3181 au-)------ U-AGUGAGCC UAA-UGau-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----auuuc- 3781 ---------A CCAACA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------A 3841 A-A-AU-GG- GA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ua---)---- ---------- ---------- UAG-AAGAA- 4021 ---------- ------ACGA --AAAAC-UA C-U(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) C-CU-A--GU -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(- cuagc-au-- --)GUCCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUC--GGCA 4261 cUGGGG-UG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaagc--au- 4381 uaauu--u-a gu-------- -uuuua---- --------ac aaa-ccaaag cccaau---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG-U AUA--C(ga- 4621 --)g~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.gar.1 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo garmani.; . ACCESSION U52745 KEYWORDS . SOURCE Mitochondrion Bufo garmani. ORGANISM Mitochondrion Bufo garmani. REFERENCE 1 (bases 1 to 940) AUTHORS Graybeal,A. TITLE radiation Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 940) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52745 BASE COUNT 262 a 199 c 161 g 203 t 4388 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gauga acccuaaaaa guucuuuaaa caCAAAGGUU 661 (UGG-)U-CC U|GACCU-UG AAG-UCAGUU -U-UUAC-UU |UA-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAAAA---CG C|CCU-Uuac --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuucu a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACg--- -----(aaac -u-------- ---------- ---------- ------)--- 1381 ----c|---u GCCCA--AAA C|ACCUA-GC --|------- (-uuu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU UAACAUUGAG C--aUUAGC( ---------- ----GNNN)N NNNNN-NNN| 1561 N|-NNNN-N- NN-NNNnnnn nnnnnnn--- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- NNNNN|-NNN 1921 -NNN-N---N NNNN-N(-NN NNNNNNN-NN -NNN-NN)-N NNNNNN|--- -nNN-NNN-- 1981 NNNNN-NNNN N--------n nnnNNN|NNA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -uunnnnnnn nnuaga--gu -----|UAAA cug-aa-acu ---AAGCU(G 2341 UGACA)CGCu --------ug uucucuau-G AAA------- ----gucgua -aAC(-GAAA 2401 -)GU|u---- ----acucua uuauaac-cu a--------- cuu-gaacUC ACGAC-AGCU 2461 G-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-AGN- NGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(cuac)a -----ucuca 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --uaa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAua-UC CCCCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGNUU A-ACCUCACC AUUUUUAGUU ---------- ---------- 2881 (-------ag u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(aga- 3181 au-)------ U-AGUGAGCu uaa-uguu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuuuc- 3781 ---------A CCAACA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ua---)---- ---------- ---------- UAG-AAAAA- 4021 ---------- ------ACGA --AAAAC-UA C-U(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) C-CU-A--GU -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(- ucagc-ac-- --)GUCCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUC-GGCAC 4261 -UGGGG-UG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaagcacc-- 4381 ---cu-ngnn gu-------- -uuuua---- --------ac aaa-cuaaag caugac---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAA~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.gar.2 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo garmani.; . ACCESSION U52746 KEYWORDS . SOURCE Mitochondrion Bufo garmani. ORGANISM Mitochondrion Bufo garmani. REFERENCE 1 (bases 1 to 869) AUTHORS Graybeal,A. TITLE radiation Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 869) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52746 BASE COUNT 238 a 199 c 160 g 195 t 4421 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----guaga acccuaaaaa guucuuuaaa caCAAANGUU 661 (UGG-)U-CC U|AACCU-UG GAG-UCAGUU -G-UUAC-UU |AA-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAGAA---CG C|CCU-Uuac --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuauu a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACg--- -----(aaag -u-------- ---------- ---------- ------)--- 1381 ----c|---a GCCCA--AAA C|ACCUA-GC --|------- (-uac--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU UAACAUUGAU C--aUUAGC( ---------- ----GCAA)G CUUGA-UUC| 1561 A|-GUUA-A- AG-UANgaca ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCACG|--- uGGC-UCA-- 1981 AAUUG-ACCC C--------u ucCGGC|GUA AAGCGUGAUU -A-nag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -uaaauuuag c-uaga--gu -----|UAAA cua-aa-acu ---AAGCU(G 2341 UGACA)CGCc --------ug uuccuuaa-N NNN------- ----nnnnnn -nNN(-NNNN 2401 -)NN|n---- ----nnnnnn nnnnnnn-nn n--nnn---- nnn-nnnnNN NNNNN-NNNN 2461 N-NNN---NN NNNNNUGGG( AUUAGANAC) CCCA-CUAU| -GCC--AGC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(uuac)a -----cauua 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --uaa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAua-uc ccCCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUC A-ACCUCACC AUUUUUAGUU ---------- ---------- 2881 (-------an u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(cua- 3181 au-)------ U-AGUGAGCu uan-uguu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----auuuc- 3781 ---------A CcAACA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-AU-GG- AA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c uu---)---- ---------- ---------- UAG-AAAAA- 4021 ---------- ------ACGA --AAAAC-UA C-U(------ ---------- ---------- 4081 ---------- --------ua UGANA----) C-CU-A--GU -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(- ucagc-au-- --)GUCCUUU U-UAC----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -cc--ggcac 4261 -UGGGG-UG- UGUACANA-N -CGGCCGUCA C-CCU--CU~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.granu 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo granulosus.; . ACCESSION U52750 KEYWORDS . SOURCE Mitochondrion Bufo granulosus. ORGANISM Mitochondrion Bufo granulosus. REFERENCE 1 (bases 1 to 809) AUTHORS Graybeal,A. TITLE alternate macroevolutionary hypotheses characterizing their radiation Phylogenetic relationships of bufonid frogs and tests of JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 809) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52750 BASE COUNT 263 a 191 c 156 g 197 t 4406 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugn acccuaaaaa guccuuuaaa caCAAAGGUU 661 (UGG-)U-CC U|GGCCU-UG AAG-UCAGUU -A-UUAC-UU |AA-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCUCCCCUGU GAAAA---CG C|CCU-Uaa- -acc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuuuu a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACg--- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ----c|---u GCCCA--AAA C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU UAACAUUGAG A--aUUAGC( ---------- ----GAAA)G CUUGA-CUC| 1561 A|-GUUA-A- AG-UAAgaua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCACG|--- uGGC-UCA-- 1981 AAUUG-ACCC C--------c uaCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -uuucauuuu -cuaga--gu -----|UAAA cua-aa-auu ---AAGCU(G 2341 UGACA)CGCc --------ug uuu-uuaa-G AAA------- ----yccaaa -aAC(-GAAA 2401 -)GU|u---- ----acucua acacaau-ca a--------- cuu-gaacUC GCGAC-AGCU 2461 G-GGG---AA CAAGCUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-AGC- AGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(uuac)a -----ccuaa 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --uaa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAua-uc ccCCUAGA|G GAGCCUAU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUU A-ACCUCACC AUUUCUAGUU ---------- ---------- 2881 (-------uc u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(uua- 3181 au-)------ U-AGUGA-Cc caa-uguu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuuuc- 3781 ---------A CCAACA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AAAAA- 4021 ---------- ------ACGA --AAAAC-UA U-U(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) U-CU-A--GU -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(~ ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.haema 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo haematiticus.; . ACCESSION U52717 KEYWORDS . SOURCE Mitochondrion Bufo haematiticus. ORGANISM Mitochondrion Bufo haematiticus. REFERENCE 1 (bases 1 to 851) AUTHORS Graybeal,A. TITLE alternate macroevolutionary hypotheses characterizing their radiation Phylogenetic relationships of bufonid frogs and tests of JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 851) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52717 BASE COUNT 268 a 209 c 160 g 199 t 4377 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg ncccuaaaaa guccuuuaaa caCAAACGUU 661 (UGG-)U-CC U|AGCCU-UG CAG-UCAAUU -A-UUAC-UU |AA-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUNU GAAAA---CG C|CCU-Uuaa --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--ccuuu a----)---- 1261 ---------- ---------- ---g--gna- --cAAGGAGC |--------- uGGUAUCA-- 1321 -G-CACg--- -----(auau -u-------- ---------- ---------- ------)--- 1381 ----c|---u GCCCA--AAA C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG UAuu---C-A 1501 GCA|GUG-AU UAACAUUGAG C--aUUAGC( ---------- ----GCAA)G CUUGA-CUC| 1561 A|-GUUA-A- AG-UAAgaua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-CA)-C ACCACG|--- uGGC-UCA-- 1981 AAUUG-ACCC C--------c ucCGGG|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------a -uuc-ccccu auuaga--gu -----|UGAA cua-aa-auu ---AAGCU(G 2341 UGACA)CGCc --------ua uuaauuaagG AAA------- ----cccaaa -cAC(-GAAA 2401 -)GU|u---- ----acucua acuuaac-ca a--------- cuu-gaacUC ACGAC-AGCU 2461 G-GGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-AGC- CAUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(uuac)a a-----uuaa 2701 a-u|--C|GC C-CGGG-AAC UACGAGC(-- --uaa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAUA-UC CCCCUAGA|G GAGCCUGU-C |CUAUA--AU NG(NUAAUCC 2821 A--------- ----)CGUUU A-ACCUCACC ACAUCUAGUU ---------- ---------- 2881 (-------aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GC-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(cuu- 3181 au-)------ U-AGUGAGCU UAA-UGUU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----auuc- 3781 ---------A CCAAUA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-GU-GG- AA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ua---)---- ---------- ---------- UAG-AAGAA- 4021 ---------- ------ACGA --AAAAU-UA U-U(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) C-CU-A--AU -U--AGAAG- -GCGGAUUUA 4141 G-A--AGUAA A-AAGGAA(- uuagc-au-- --)GUCCAUU N-NAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CNN--NNNN 4261 NNGGGG-UG- UGUACACC~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.kisol 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo kisoloensis.; . ACCESSION U52734 KEYWORDS . SOURCE Mitochondrion Bufo kisoloensis. ORGANISM Mitochondrion Bufo kisoloensis. REFERENCE 1 (bases 1 to 916) AUTHORS Graybeal,A. TITLE Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their radiation JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 916) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52734 BASE COUNT 283 a 231 c 187 g 207 t 4305 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~AAGn----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAAAA---CG C|CCU-Uuac --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuguu a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- uGGUAUGC-- 1321 -GGCACg--- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ----c|---g GCCCA--ANU C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAcu---C-A 1501 GCA|GUG-AU UAACAUUGAG c--aUUAGC( ---------- ----GCAA)G CUUGA-CUC| 1561 A|-GUUA-A- GG-UAAu-ca ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCACG|--- uGGC-UCA-- 1981 AAUUG-ACCU c--------u ucCGGC|GUA AAGCGUGAUU -A-aag-|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -uaa-accua acuaga--gu -----|UAAA cug-aa-acu ---AAGCU(G 2341 UGACA)CGCu --------ug uuuucaag-G AAG------- ----cucaaa -aAC(-GAAA 2401 -)GU|u---- ----acucua acauaaa-ca a--------- cuu-gaauUC NCGAC-AGCU 2461 G-GGG---CA CNNNCUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(uuac)a -----ucaua 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --uaa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAUA-UC CCCCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUU A-ACCUCACC AUUUCUAGUU ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(cca- 3181 au-)------ U-AGUGAGCC UAA-UGUU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- --------au (------)-- ------uuc- 3781 ---------A CCAACA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-AU-GG- AA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAGAA- 4021 ---------- ------ACGA --AAAAC-UA C-A(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) C-CU-A--GU -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(- ucagc-ac-- --)AUCCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCA 4261 CUGGGG-UG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gaagcauuu- 4381 ---ua-aca- gu-------- -uuuua---- --------ac gaguca-aag cacuac---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG-C AUA-CC(GGA 4621 -A)GNN-GU- GCUUGGAUAC ---------| gcaauguagc uuaaaaaaag ccucucacuu 4681 acacc----- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.macul 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo maculatus.; . ACCESSION U52728 KEYWORDS . SOURCE Mitochondrion Bufo maculatus. ORGANISM Mitochondrion Bufo maculatus. REFERENCE 1 (bases 1 to 815) AUTHORS Graybeal,A. TITLE Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their radiation JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 815) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52728 BASE COUNT 260 a 197 c 158 g 196 t 4402 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gauga acccuaaaaa guucuuuaaa caCAAAGGUU 661 (UGG-)U-CC U|GACCU-UG UAG-UCAAUU -G-UUAC-UU |GA-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAAAA---CG C|CCU-Uuac --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cucuu a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACg--- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ----c|---u GCCCA--AAA C|ACCUA-GC --|------- (-uac--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAcu---C-A 1501 GCA|GUG-AU UAACAUUGAG C--aUUAGC( ---------- ----GCAA)G CUUGA-CUC| 1561 A|-GUUA-A- AG-UAAg-ua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCACG|--- uGGC-UCA-- 1981 AAUUG-ACUU C--------c ucCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -uaa-accca acuaga--gu -----|UAAA uua-aa-acu ---AAGCU(G 2341 UGACA)CGCu --------ug uuaaccaa-G AAG------- ----cccaua -aAC(-GAAA 2401 -)GU|u---- ----acucua uuauaau-ca a--------- cuu-gaauUC ACGAC-AGCU 2461 G-GGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-AGC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(uuac)a ----cucaau 2701 a-u|--C|GC C-AGGG-AAU UACGAGC(-- --uaa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAUa-UC CUUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUU A-ACCUCACC AUUUUUAGUU ---------- ---------- 2881 (-------aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(caa- 3181 ac-)------ U-AGUGAGCc uaa-uguu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuuac- 3781 ---------a CCAAUA-CGU C-AGGUCAAG G|UGCA|GUA AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ua---)---- ---------- ---------- UAG-AAGAA- 4021 ---------- ------ACGA --AAAAC-UA C-C(------ ---------- ---------- 4081 ---------- --------ua UGANA----) U-CU-A--GU -U--NGNAG- -GCGGAUUUN 4141 G-C--AGCAA A-AAGGAA(- ucag~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.mauri 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo mauritanicus.; . ACCESSION U52725 KEYWORDS . SOURCE Mitochondrion Bufo mauritanicus. ORGANISM Mitochondrion Bufo mauritanicus. REFERENCE 1 (bases 1 to 928) AUTHORS Graybeal,A. TITLE alternate macroevolutionary hypotheses characterizing their radiation Phylogenetic relationships of bufonid frogs and tests of JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 928) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52725 BASE COUNT 294 a 236 c 182 g 216 t 4285 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gauga gcccuaaaaa gcucuuuaaa caCAAAGGUU 661 (UGG-)U-CC U|AACCU-UG AAG-UCAGUC -A-UUAC-UU |AA-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCUCCCUGU GAGAA---CG C|CCU-Uuac --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuuuu a----)---- 1261 ---------- ---------- ---g--gga- --cGAGGAGC |--------- uGGUAUCA-- 1321 -GGUACg--- -----(aaac -u-------- ---------- ---------- ------)--- 1381 ----c|---u GCCCA--AAA C|ACCUA-GC --|------- (-uuu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU UAACAUUGAG C--aUUAGC( ---------- ----GCAA)G CUUGA-CUC| 1561 A|-GUUA-A- AG-UAAaaua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCAUG|--- uGGC-UCA-- 1981 AAUUG-ACUU C--------c ucCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -uaa-aucua acuaga--gu -----|UAAA cua-aa-acu ---AAGCU(G 2341 UGACA)CGCu --------ug uuuuuaag-G AAA------- ----gccaaa -aAC(-GAAA 2401 -)GU|u---- ----acucua auacaau-ca a--------- cuu-gaacUC ACGAC-AGCU 2461 G-GGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-AGC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(uuac)a -----ccuag 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --uaa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAUa-UC CCCCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUU A-ACCUCACC ACUUCUAGUU ---------- ---------- 2881 (-------aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(cca- 3181 aa-)------ U-AGUGAGCC UAA-UGU--- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---uauucc- 3781 ---------A CCAAUA-CGU C-AGGUCAAG G|UGCA|GCA UAU------- ---------G 3841 A-A-GU-GG- AA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c ca---)---- ---------- ---------- UAG-AAGAA- 4021 ---------- ------ACGA --AAAAC-UA C-U(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) C-CU-A--GU -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(- ucagc-ac-- --)GUCCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCA 4261 cUGGGG-UG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaagcacc-- 4381 -uuau-u--a gu-------- -ccgua---- --------ac aaa-cuacag cauuac---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC A~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.mazat 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo mazatlanensis.; . ACCESSION U52723 KEYWORDS . SOURCE Mitochondrion Bufo mazatlanensis. ORGANISM Mitochondrion Bufo mazatlanensis. REFERENCE 1 (bases 1 to 929) AUTHORS Graybeal,A. TITLE alternate macroevolutionary hypotheses characterizing their radiation Phylogenetic relationships of bufonid frogs and tests of JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 929) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52723 BASE COUNT 290 a 225 c 175 g 220 t 4303 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg acccuaaaaa guccuuuaaa caCAAAGGUU 661 (UGG-)U-CC U|GGCCU-UG AAG-UCAGUU -A-UUAC-UU |AG-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAAAA---CG C|CCU-Uaaa --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuuuu a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACg--- -----(aaua au-------- ---------- ---------- ------)--- 1381 ----c|---u GCCNA--AAA C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU UAACAUUGNN U--aUUAGC( ---------- ----GCAA)G CUUGA-CUC| 1561 A|-GCUA-A- GU-AANnnnn ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- NNNNC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCACG|--- uGGC-UCA-- 1981 AAUUG-ACCU C--------c ucCGNN|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -gau-cuuuu uauaga--gu -----|UAAA uua-aa-acu ---AAGCU(G 2341 UGACA)CGCu --------ug uuuauuaa-G AAA------- ----cccaga -aAC(-GAAA 2401 -)GU|u---- ----acucua auauaac-ca a--------- cuu-gaauUC ACGAC-AGCU 2461 G-GGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-AAC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(uuac)a -----ccuua 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --uaa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAuA-UC CCCCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUU A-ACCUCACC AUUUCUAGUU ---------- ---------- 2881 (-------aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(cca- 3181 au-)------ U-AGUGAGCC UAA-UGUU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuuc- 3781 ---------A CCAACA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a uu---)---- ---------- ---------- UAG-AAGAA- 4021 ---------- ------ANGA --AAAAC-UA C-C(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) C-CU-A--GU -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(- ucagc-au-- --)GUCCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCA 4261 CUGGGG-UG- UGUACACA-C -NGCCNGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaagc---c- 4381 ccunc-uc-a gu-------- -uuuua---- --------ac caa-cuaaug caaaac---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-N AAGUCGUAAC AU~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.melc 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo melanochloris.; . ACCESSION U52749 KEYWORDS . SOURCE Mitochondrion Bufo melanochloris. ORGANISM Mitochondrion Bufo melanochloris. REFERENCE 1 (bases 1 to 931) AUTHORS Graybeal,A. TITLE Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their radiation JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 931) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52749 BASE COUNT 298 a 230 c 179 g 224 t 4282 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gauga acccuaaaaa guucuuuaaa caCAAAGGUU 661 (UGG-)U-CC C|AGCUU-UG AAG-UCAGUU -A-UUAC-UU |AG-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAAAA---CG C|CCU-Uaa- -acc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cucuu a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACg--- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ----c|---u GCCCA--AAA C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAcu---C-A 1501 GCA|GUG-AU UAACAUUGAG C--aUUAGC( ---------- ----GCAA)G CUUGA-CUC| 1561 A|-GCUA-A- -G-UAAgaua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCACG|--- uGGC-UCA-- 1981 AAUUG-ACCU U--------a caCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -u--cuuu-u uauaga--gu -----|UAAA cua-aa-acu ---AAGCU(G 2341 UGACA)CGCc --------ug uuuaucaa-G AAA------- ----cccaaa -aAC(-GAAA 2401 -)GU|u---- ----acucua auuuuau-ca a--------- cuu-gaacUC ACGAC-AGCU 2461 G-GGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-AGC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(uuac)a -----cuuaa 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --uaa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAua-uc ccCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUU A-ACCUCACC AUUUCUAGUU ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(A --UGA)GCG- -----(uca- 3181 au-)------ U-AGUGAGCc uaa-uguu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuuc- 3781 ---------A CCAACA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a uu---)---- ---------- ---------- UAG-AAAAA- 4021 ---------- ------ACGA --AAAGC-UA C-U(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) C-CU-A--GU -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(- ucagc-au-- --)GUCCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -Ccc-ggcac 4261 -UGGGG-UG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaagcccc-- 4381 ---ua-cuca gu-------- -uuuua---- --------ac uca-cuaaug caaaac---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.mels 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo melanostictus.; . ACCESSION U52721 KEYWORDS . SOURCE Mitochondrion Bufo melanostictus. ORGANISM Mitochondrion Bufo melanostictus. REFERENCE 1 (bases 1 to 945) AUTHORS Graybeal,A. TITLE alternate macroevolutionary hypotheses characterizing their radiation Phylogenetic relationships of bufonid frogs and tests of JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 945) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52721 BASE COUNT 305 a 237 c 186 g 216 t 4269 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg acccuaaaaa guccuuuaaa caCAAAGGUU 661 (UGG-)U-CC U|GACCU-UG AAG-UCAGUU -A-UUAC-UU |AA-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAGAA---CG C|CCU-Uuuu -aac-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuuau a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACa--- -----(auaa -u-------- ---------- ---------- ------)--- 1381 ----c|---u GCCCA--AGA C|ACCUA-GC --|------- (-cac--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AUcu---C-A 1501 GCA|GUG-AU UAACAUUGAG C--aUUAGC( ---------- ----GAAA)G CUUGA-CUC| 1561 A|-GUUA-A- AG-UAAaaca ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCACG|--- uGGC-UCA-- 1981 AAUUG-ACCC C------a-c uuCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -uaa-acgcc acuaga--au -----|UAAA cua-aa-acu ---AAGCU(G 2341 UGACA)CGCu --------ug uuua-cga-G AGA------- ----cacgaa -gAC(-GAAA 2401 -)GU|u---- ----auucua ucauaau-ca a--------- cuu-gaacUC ACGAC-AGCU 2461 A-GGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(uuac)a -----ccc-a 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --uaa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUG- CCCCAUA-UC CCCCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUC A-ACCUCACC AUCUUUAGUU ---------- ---------- 2881 (-------aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(cca- 3181 au-)------ U-AGUGAGCU UAA-UGUU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cuuc- 3781 ---------A CCAAUA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--GA -UGGGCUACA CU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- UAG-AAAAA- 4021 ---------- ------ACGA --AAAAC-UA C-C(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) C-CU-A--GU -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(- ucagc-au-- --)GUCCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UCC--GGCA 4261 CUGGGG-UG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaagcuuc-- 4381 -aagc-ac-a gu-------- -cuuua---- --------ac aaa-nuuaag cacaac---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG-U AUA-CC(GGA 4621 -A)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.micro 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo microscaphus.; . ACCESSION U52708 KEYWORDS . SOURCE Mitochondrion Bufo microscaphus. ORGANISM Mitochondrion Bufo microscaphus. REFERENCE 1 (bases 1 to 927) AUTHORS Graybeal,A. TITLE Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their radiation JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 927) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52708 BASE COUNT 290 a 225 c 184 g 228 t 4286 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg acccuaaaaa guccuuuaga caCAAAGGUU 661 (UGG-)U-CC U|GGCCU-UG AGG-UCAGUU -A-UUAC-UU |AG-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAAAA---CG C|CCU-Uuaa --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuuuu a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACu--- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ----u|---a GCCCA--AGA C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU UAACAUUGAG C--aUUAGC( ---------- ----GAAA)G CUUGA-CUC| 1561 A|-GUUA-A- AG-UAAaaua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCACG|--- uGGC-UCA-- 1981 AAUUG-ACCC C--------- ucCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -uuc-uucau acuaga--gu -----|UAAA cua-aa-acu ---GAGCU(G 2341 UGACA)CGCc --------ug uuuaauaa-G AAA------- ----cccagg -aAC(-GAAA 2401 -)GU|u---- ----acucua ucauaau-ca a--------- cuu-gaauUC ACGAC-AGCU 2461 A-GGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(ucac)a -----cccaa 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --caa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAUA-UC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUU A-ACCUCACC AUUUUUAGUU ---------- ---------- 2881 (-------ac u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(uca- 3181 au-)------ U-AGUGAGCU UAA-UGUU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuuc- 3781 ---------A CCAAUA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- UAG-AAGAA- 4021 ---------- ------ACGG --AAAAC-UA C-C(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) U-CU-A--GU -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(- ucagc-au-- --)AUCCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCA 4261 CUGGGG-UG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaagcuaau- 4381 -cuaa-ucua gu-------- -uuuua---- --------ac aua-uuugag ccuuac---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAA~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.punct 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo punctatus.; . ACCESSION U52716 KEYWORDS . SOURCE Mitochondrion Bufo punctatus. ORGANISM Mitochondrion Bufo punctatus. REFERENCE 1 (bases 1 to 935) AUTHORS Graybeal,A. TITLE Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their radiation JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 935) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52716 BASE COUNT 279 a 228 c 178 g 219 t 4309 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg acccuaaaaa guccuuuaaa caCAAAGGUU 661 (UGG-)U-CC U|GGCCU-UG AGG-UCAGUU -A-UUAC-UU |AC-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAAAA---CG C|CCU-Uuaa --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuccu a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACu--- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ----u|---u GCCCA--AGA C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU UAACAUUGAG C--aUUAGC( ---------- ----GAAA)G CUUGA-CUC| 1561 A|-GUUA-A- AG-UAUuuca ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC UGCCGCC-GC -GGU-UA)-C ACCACG|--- uGGC-UCA-- 1981 AAUUG-ACCC C--------c ucCGGC|GUA AAGNGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -ucu-uaucu ccuaga--gu -----|UAAA cua-aa-acu ---AAGCU(G 2341 UGACA)CGCc --------ug uuuaunaa-G AAA------- ----cucaga -aAC(-GAAA 2401 -)GU|u---- ----acucua acannac-ca a--------- cuu-gaacUC ACGAC-AGCU 2461 A-GGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CGUAAN-cuu 2521 u--ca----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(uuac)a -----uccua 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --caa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCACA-UC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUU A-ACCUCACN NNNNNUAGUU ---------- ---------- 2881 (-------ac u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(uca- 3181 au-)------ U-AGUGAGCU UAA-UGUU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuuc- 3781 ---------A CCAAUA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-AN-NN- NN-NGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c uu---)---- ---------- ---------- UAG-AANAA- 4021 ---------- ------NCGA --AAAAC-UA U-C(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) U-CU-A--GU -U--AGAAG- gGCGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- ucagc-au-- --)GUCCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUC--GGCA 4261 CUGGGG-UG- UGUACACA-C -CGCCCGUCN C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaagnnnnn- 4381 -nnnn-cuua gn-------- -unuua---- --------ac aaa-ccuaag cauuac---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGU~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.querc 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo quercicus.; . ACCESSION U52709 KEYWORDS . SOURCE Mitochondrion Bufo quercicus. ORGANISM Mitochondrion Bufo quercicus. REFERENCE 1 (bases 1 to 998) AUTHORS Graybeal,A. TITLE Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their radiation JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 998) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52709 BASE COUNT 315 a 242 c 192 g 235 t 4229 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg acccuaaaaa guccuuuaaa caCAAAGGUU 661 (UGG-)U-CC U|GGCCU-UG AGG-UCAGUU -A-UUAC-UU |AG-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAAAA---CG C|CCU-Uuaa --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuucu a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACu--- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ----u|---u GCCCA--AGA C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU UAACAUUGAG A--aUAAGC( ---------- ----GAAA)G CUUGA-CUC| 1561 A|-GUUA-A- AG-UAAgaua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCACG|--- uGGC-UCA-- 1981 AAUUG-ACCC C--------c ucCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -uau-ccgcu acuaga--gu -----|UAAA cua-aa-acu ---AAGCU(G 2341 UGACA)CGCc --------ug uucauuaa-G AAA------- ----cccaaa -aAC(-GAAA 2401 -)GU|u---- ----acucua cuccaac-ca a--------- cuu-gaacUC ACGAC-AGCU 2461 A-GGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CGUAAA-ccu 2521 u--ca----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(uuac)a c-----ucaa 2701 a-u|--C|GC C-AGGG-AAC UACGAGN(-- --naan-)NN UUA--AAANN NAAANNNN-U 2761 UG|ACGGUA- CCCCACA-UC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGUUU A-ACCUCACC AUUUUUUGUU ---------- ---------- 2881 (-------au u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UA GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(cua- 3181 au-)------ U-AGUGAGCU CAA-UGUN-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuuc- 3781 ---------A CCAAUA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u cu---)---- ---------- ---------- UAG-AAGAA- 4021 ---------- ------ACGG --AAAAC-UA C-U(------ ---------- ---------- 4081 ---------- --------ua UNAAA----) U-CU-A--GU -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(- ucagc-au-- --)AUCCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCA 4261 CUGGGG-UG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaagcuauu- 4381 aucaa-ccua gu-------- -uuuua---- --------ac aaa-cuaaaa ucuugc---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG-U AUA-CC(GGA 4621 -A)GGU-GU- GCUUGGAAA- ---------| cguaauguag cuuaacuaaa gccucucacu 4681 uacac----- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.retif 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo retiformis.; . ACCESSION U52718 KEYWORDS . SOURCE Mitochondrion Bufo retiformis. ORGANISM Mitochondrion Bufo retiformis. REFERENCE 1 (bases 1 to 843) AUTHORS Graybeal,A. TITLE alternate macroevolutionary hypotheses characterizing their radiation Phylogenetic relationships of bufonid frogs and tests of JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 843) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52718 BASE COUNT 255 a 213 c 169 g 190 t 4386 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg acccunaaaa guccuuuaaa caCAAAGGUU 661 (UGG-)U-CC U|GGCCU-UG AGG-UCAGUU -A-UUAC-UU |AA-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GNAAA---CG C|CCU-Uuaa --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuccu a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACu--- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ----u|---u GCCCA--AGA C|ACCUA-GC --|------- (-uuu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAcu---C-A 1501 GCA|GUG-AU UAACAUUGAG A--aUUAGC( ---------- ----GAAA)G CUUGA-CUC| 1561 A|-GUUA-A- AG-UAAgaca ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCN|-GGC 1921 -UAA-U---C UGGU-G(-NC ANCCNCC-GC -GGU-UA)-C NCNACG|--- uGGC-UCG-- 1981 AANUG-ACCC C--------c ucCGGC|GUA AAGCGUGAAU -A-gag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -uuc-cuuau acuaga--gu -----|UGAN cug-aa-acu ---AAGCU(G 2341 UGACA)CGCu --------ug ucuaccaa-G AAA------- ----uccana -aNC(-GAAA 2401 -)GU|u---- ----acucua cuacaac-ca a--------- cuu-gaacUC NCGAC-ANCU 2461 A-GGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(ucac)a -----cccaa 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --caa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCACA-UC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUU A-ACCUCACC AUUUCUAGUU ---------- ---------- 2881 (-------au u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(cua- 3181 au-)------ U-AGUGAGCC CAA-UGUU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuuc- 3781 ---------A CCAAUA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u cu---)---- ---------- ---------- UAG-AAGAA- 4021 ---------- ------ACGG --AAAAC-UA C-C(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) C-CU-A--GU -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(- ucagc-au-- --)GUCCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCA 4261 NUGGGG-NG~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.speci 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo speciosus.; . ACCESSION U52713 KEYWORDS . SOURCE Mitochondrion Bufo speciosus. ORGANISM Mitochondrion Bufo speciosus. REFERENCE 1 (bases 1 to 944) AUTHORS Graybeal,A. TITLE alternate macroevolutionary hypotheses characterizing their radiation Phylogenetic relationships of bufonid frogs and tests of JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 944) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52713 BASE COUNT 292 a 231 c 187 g 226 t 4277 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg ncccuaaaaa guccuuuaga caCAAAGGUU 661 (UGG-)U-CC U|GGCCU-UG AGG-UCAGUU -A-UUAC-UU |AG-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAAAA---CG C|CCU-Uuaa --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuuuu a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- UGGUAUCA-- 1321 -GGCACua-- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ----u|---u GCCCA--AGA C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU UAACAUUGAG C--aUUAGC( ---------- ----GAAA)G CUUGA-CUC| 1561 A|-GUUA-A- AG-UAAaaua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCACG|--- uGGC-UCA-- 1981 AAUUG-ACCC C--------c ucCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -uuc-uucau acuaga--gu -----|UAAA cua-aa-acu ---AAGCU(G 2341 UGACA)CGCc --------ug uucaucaa-G AAA------- ----cccgaa -aAC(-GAAA 2401 -)GU|u---- ----acucua ucauaau-ca a--------- cuu-gaauUC ACGUC-AGCU 2461 A-GGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(ucac)a -----uccga 2701 a-u|--C|GC C-AGGG-aa- ---GAGC(-- --caa--)GC UUA--AANCC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAUA-UC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUU A-ACCUCACC AUUUNUAGUU ---------- ---------- 2881 (-------ac u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---NNC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(uua- 3181 gu-)------ U-AGUGAGCU UAA-UGUU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cuuc- 3781 ---------A CCAAUA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--GA -UGGNCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- UAG-AAGAA- 4021 ---------- ------ACGG --AAAAC-UA C-C(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) C-CU-A--GU -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(- ucagc-au-- --)GUCCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCN--GGAA 4261 CUGGGG-UG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaagcuacc- 4381 -uuau-uaua gu-------- -ccuua---- --------ac aca-cuaaag ncuuac---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG-U AUA-CC(GGA 4621 -A)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.taita 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo taitanus.; . ACCESSION U52729 KEYWORDS . SOURCE Mitochondrion Bufo taitanus. ORGANISM Mitochondrion Bufo taitanus. REFERENCE 1 (bases 1 to 925) AUTHORS Graybeal,A. TITLE Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their radiation JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 925) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52729 BASE COUNT 307 a 223 c 170 g 219 t 4294 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gauga acccuaaaaa guucuuuaaa caCAAAGGUU 661 (UGG-)U-CC U|GACCU-UG GAG-UCAACU -U-UUAC-UU |AA-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCUCCCUGU GAAAA---CG C|CCU-Uaaa --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--ccucu a----)---- 1261 ---------- ---------- ---g--gga- --cGAGGAGC |--------- cGGUAUCA-- 1321 -GGNAN---- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 --uuu|---u GCCNA--AAA N|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU UAACAUUGAG C--aUUAGC( ---------- ----GCAA)G CUUGA-CUC| 1561 A|-GUCA-A- AG-UAAaaau a--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -CAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCAUG|--- uGGC-UCA-- 1981 AAUUG-ACCC C--------c uuCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -caa-caaac ucuaga--gu -----|UAAA cua-aa-acu ---GAGCU(G 2341 UGACA)UGCc --------ug uu-a-caa-G AAA------- ----cccaaa -aAC(-GAAA 2401 -)GU|u---- ----acucua auauaac-cu a--------- cuu-gaauUC ACGAC-AGCC 2461 A-GGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-GAC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(uuac)a ----cuuuaa 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --uaa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAUa-UC CCCCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUU A-ACCUCACC AUUUUUAGCC ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |NC|-UC--C |G------UC GC-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(caa- 3181 gu-)------ C-AGUGAGCu uaa-uguu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----auuuc- 3781 ---------a CCAAUA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-AU-GG- AA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c uu---)---- ---------- ---------- UAG-AAAAA- 4021 ---------- ------ACGA --AAAAC-UA C-C(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) C-CU-A--GU -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AUAAAA(- ucaga-au-- --)AUUUAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUC--GGCA 4261 cUGGGG-UG- UGUACACA-C -NGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaagua---- 4381 cauaa-ac-a gu-------- -cuuua---- --------ac aaa-cucaaa uuuaac---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-U AAGUCGU~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.terre 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo terrestris.; . ACCESSION U52712 KEYWORDS . SOURCE Mitochondrion Bufo terrestris. ORGANISM Mitochondrion Bufo terrestris. REFERENCE 1 (bases 1 to 933) AUTHORS Graybeal,A. TITLE radiation Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 933) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52712 BASE COUNT 292 a 224 c 185 g 231 t 4281 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg acccuaaaaa guccuuuaga caCAAAGGUU 661 (UGG-)U-CC U|GGCCU-UG AGG-UCAGUU -A-UUAC-UU |AG-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAAAA---CG C|CCU-Uuaa --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuuuu a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCUCu--- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ----u|---a GCCCA--AGA C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU UAACAUUGAG C--aUUAGC( ---------- ----GAAA)G CUUGA-CUC| 1561 A|-GUUA-A- AG-UAAgaua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCACG|--- uGGC-UCA-- 1981 AAUUG-ACCC C--------c uaCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -uuc-uucau acuaga--gu -----|UAAA cua-aa-acu ---AAGCU(G 2341 UGACA)CGCc --------ag uuuauuaa-G AAA------- ----cccgag -aAC(-GAAA 2401 -)GU|u---- ----acucua ucauaac-ca a--------- cuu-gaauUC ACGAC-AGCU 2461 A-GGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(ucac)a -----uccaa 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --caa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAUA-UC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUU A-ACCUCACC AUUUUUAGUU ---------- ---------- 2881 (-------ac u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(uca- 3181 au-)------ U-AGUGAGCU UAA-UGUU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuuc- 3781 ---------A CCAAUA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- UAG-AAGAA- 4021 ---------- ------ACGG --AAAAC-UA C-C(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) U-CU-A--GU -U--AGAAG- -GCGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- ucagc-au-- --)AUCCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCA 4261 CUGGGG-UG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaagcuauu- 4381 -cuaa-ucua gu-------- -uuuua---- --------ac aua-uuaaag ncuuac---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGG~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.valli 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo valliceps.; . ACCESSION U52751 KEYWORDS . SOURCE Mitochondrion Bufo valliceps. ORGANISM Mitochondrion Bufo valliceps. REFERENCE 1 (bases 1 to 922) AUTHORS Graybeal,A. TITLE radiation Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 922) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52751 BASE COUNT 294 a 231 c 176 g 219 t 4293 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg aacccuaaaa guccuuuaaa caCAAAGGUU 661 (UGG-)U-CC U|GGCCU-UG AAG-UCAGUU -A-UUAC-UU |AG-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAAAA---CG C|CCU-Uaa- -acc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuguu a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACg--- -----(aaaa au-------- ---------- ---------- ------)--- 1381 ----c|---u GCCCA--AAA C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU UAACAUUGAG C--aUUAGC( ---------- ----GCAA)G CUUGA-CUC| 1561 A|-GCUA-A- AG-UAAgaua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCACG|--- uGGC-UCA-- 1981 AAUUG-ACCC C--------c ucCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -uacuuuuuu -uuaga--gu -----|UAAA cua-aa-acu ---AAGCU(G 2341 UGACA)CGCc --------ug uuuauuaa-G AAA------- ----cccaga -aAC(-GAAA 2401 -)GU|u---- ----acucua auuuaac-ca a--------- cuu-gaauUC ACGAC-AGCU 2461 G-GGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-AGC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(uuac)a -----cucaa 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --uaa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAua-uc cnCCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUU A-ACCUCACC AUUUCUAGUU ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(cca- 3181 au-)------ U-AGUGAGCu uaa-uguu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuuuc- 3781 ---------A CCAACA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-AU-GG- AA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a uu---)---- ---------- ---------- UAG-AAAAU- 4021 ---------- ------ACGA A-AAAAC-UA C-C(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) C-CU-A--GU -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(- ucagc-au-- --)GUCCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCA 4261 CUGGGG-UG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaagccc--- 4381 -ccua-ccua gu-------- -uuaua---- --------ac uaa-cuaaug caaaac---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A NAAG-AGG-C AA~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.verte 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo vertebralis.; . ACCESSION U52730 KEYWORDS . SOURCE Mitochondrion Bufo vertebralis. ORGANISM Mitochondrion Bufo vertebralis. REFERENCE 1 (bases 1 to 922) AUTHORS Graybeal,A. TITLE Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their radiation JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 922) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52730 BASE COUNT 287 a 229 c 184 g 215 t 4298 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gauga acccuaaaaa guucuuuaaa caCAAAGGCU 661 (UGG-)U-CC U|GACCU-UG AAG-UCAAUU -A-UUAC-UU |AA-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAGAA---CG C|CCU-U-ca --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cucuu a----)---- 1261 ---------- ---------- ---g--gaa- --uAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACg--- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ----c|---g GCCCA--AAA C|ACCUA-GC --|------- (-cau--)-- -------GC| 1441 CACG------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAau---C-A 1501 GCA|GUG-AU UAACAUUGAG C--aUUAGC( ---------- ----GCAA)G CUUGA-CUC| 1561 A|-GUUA-A- AG-UAAa-ua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -CAA-U---C UGGU-G(-CC AGNNNNN-GC -GGU-UA)-C ACCACG|--- uGGC-UCA-- 1981 AGUUG-ACCU C--------c ucCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -ucuuccacc acuaga--gu -----|UAAA uua-aa-acu ---AAGCC(G 2341 UGACA)CGCu --------ug uuccuuaa-G AAA------- ----cccaga -aAC(-GAAA 2401 -)GU|u---- ----acucua a-uauac-ua g--------- cuu-gaacUC ACGAC-AGCU 2461 G-GGG---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-AGC- NGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(uuac)a -----ucuaa 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --uaa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCACa-UC CUACUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUAAUCC 2821 G--------- ----)CGUUU A-NCCUCACC AUCUUUAGUU ---------- ---------- 2881 (-------aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(caa- 3181 au-)------ U-AGUGGGCc caa-uguu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----auuac- 3781 ---------a CCAAUA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------A 3841 A-G-AU-GG- GA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- UAG-AAAAA- 4021 ---------- ------ACGG --AAAAC-UA C-C(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) C-CU-A--GU -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(- ucaac-ac-- --)GUCCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUU--GGCA 4261 cUGGGG-UG- UGUACACA-C -UGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gaagc---a- 4381 uuucu-au-a gu-------- -cuuua---- --------ac aaa-acuucg cacaag---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGU~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.woodh 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo woodhousei.; . ACCESSION U52710 KEYWORDS . SOURCE Mitochondrion Bufo woodhousei. ORGANISM Mitochondrion Bufo woodhousei. REFERENCE 1 (bases 1 to 922) AUTHORS Graybeal,A. TITLE radiation Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 922) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52710 BASE COUNT 276 a 202 c 172 g 212 t 4351 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gangg ncccnaaaaa guccuuuaga caCAAAGGUU 661 (UGG-)U-CC U|GGCCU-UG AGG-UCAGUU -A-UUAC-UU |AG-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAAAA---CG C|CCU-Uuaa --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuuuu a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCUCu--- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ----u|---a GCCCA--AGA C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU UAACAUUGAG C--aUUAGC( ---------- ----GAAA)G CUUGA-CUC| 1561 A|-GUUA-A- AG-UAAaaua ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCACG|--- uGGC-UCA-- 1981 AAUUG-ACCC C--------- uaCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -ucc-uucau acuaga--gu -----|UAAA cua-aa-acu ---AAGCU(G 2341 UGACA)CGCc --------ug uuuauuaa-G AAA------- ----cccaag -aAC(-GAAA 2401 -)GU|u---- ----acucua ucauaac-ca a--------- cuu-gaauUC ACGAC-AGCU 2461 A-GGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(ucac)a -----uccaa 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --caa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAUA-UC CACCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUU A-ACCUCACC AUUUUUAGUU ---------- ---------- 2881 (-------ac u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(uca- 3181 au-)------ U-AGUGAGCU UAA-UGUU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuuc- 3781 ---------A CCAAUA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- UAG-AAGAA- 4021 ---------- ------ACGG --AAAAC-UA C-C(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) U-CU-A--GU -U--AGAAG- -GCGGAUUUA 4141 G-U--AGUAA A-AAGGAA(- ucagc-nn-- --)NNNNNNN N-NNN----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -NNN--NNNN 4261 NNNNNN-NN- NNNNNNNN-N -NNNNNNNNN N-NNN--NUC U--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< ucaaagguau 4381 ucuua-ucun gu-------- -uuuna---- --------ac aan-nnaaag gcuuac---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GNAG-AGG-G AA~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.virid 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Bufo viridis.; . ACCESSION U52727 KEYWORDS . SOURCE Mitochondrion Bufo viridis. ORGANISM Mitochondrion Bufo viridis. REFERENCE 1 (bases 1 to 959) AUTHORS Graybeal,A. TITLE Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their radiation JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 959) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52727 BASE COUNT 301 a 235 c 196 g 225 t 4256 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg acccuaaaaa guccuuuaaa caCAAAGGUU 661 (UGG-)U-CC U|AGCCU-UG AAG-UCAGUU -A-UUAC-UU |AA-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAAAA---CG C|CCU-Uuaa --uc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--ccucu a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACg--- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ----c|---u GCCCA--AGA C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU UAACAUUGAG C--aUUAGC( ---------- ----GCAA)G CUUGA-CUC| 1561 A|-GUUA-A- AG-UAAgauu a--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCAUG|--- uGGC-UCA-- 1981 AAUUG-ACCC C--------c ucCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -uau-cuguu aauaga--gu -----|UAAA cug-aa-acu ---AAGCU(G 2341 UGACA)CGCc --------ug uuuaucaa-G AAA------- ----cccgaa -aAC(-GAAA 2401 -)GU|u---- ----acucua acuuaau-ca a--------- cuu-gacuUC ACGAC-AGCU 2461 G-GGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-AGC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(uuac)a -----cccaa 2701 a-u|--C|GN C-CGGG-AAC UACGAGC(-- --uaa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAUa-UC CCCCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUU A-ACCUCACC ACUUCUAGUU ---------- ---------- 2881 (-------aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(uaa- 3181 au-)------ U-AGUGAGCc caa-uguu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----guuuc- 3781 ---------a CCAACA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-GU-GG- GA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- UAG-AAGAA- 4021 ---------- ------ACGA --AAAAC-UA C-U(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) C-CU-A--GU -U--AGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGAAA(- ucagc-au-- --)GUUCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCA 4261 cUGGGG-UG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaagc---a- 4381 uagac-aa-a gu-------- -cuuua---- --------ac aag-cuugag cauaac---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG-U AUA-CC(GG~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ccaguugugn gaugg|---- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.L.con.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Leptopelis concolor. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Leptopelis concolor. ORGANISM Mitochondrion Leptopelis concolor. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U22079 LOCUS LCU22079 729 bp DNA VRT 09-AUG-1995 DEFINITION Leptopelis concolor 12S ribosomal RNA and 16S ribosomal RNA genes, partial sequence, and Val-tRNA gene, mitochondrial genes encoding mitochondrial RNA, complete sequence. ACCESSION U22079 KEYWORDS . SOURCE Leptopelis concolor. ORGANISM Mitochondrion Leptopelis concolor Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Osteichthyes; Sarcopterygii; Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Hyperoliidae; Leptopelis. REFERENCE 1 (bases 1 to 729) AUTHORS Richards,C.M. and Moore,W.S. TITLE Using mt rDNA to derive a phylogeny for the African treefrog family, Hyperoliidae JOURNAL Unpublished REFERENCE 2 (bases 1 to 729) AUTHORS Richards,C.M. TITLE Direct Submission JOURNAL Submitted (28-FEB-1995) Christina M. Richards, Biological Sciences, Wayne State University, Detroit, MI 48202, USA COMMENT NCBI gi: 939653 FEATURES Location/Qualifiers source 1..729 /organism="Leptopelis concolor" /mitochondrion rRNA <1..495 /product="12S ribosomal RNA" tRNA 496..565 /product="Val-tRNA" rRNA 566..>729 /product="16S ribosomal RNA" BASE COUNT 269 a 149 c 128 g 174 t 9 others ORIGIN BASE COUNT 172 a 114 c 97 g 111 t 4719 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- ---~--~~~- --~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~--- -----(~~~~ -~-------- ---------- ---------- ------)--- 1381 ----~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- ~~~~-~~~-- 1981 ~~~~~-~~~~ ~--------~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~~~~~ ---~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~~~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| -~~CC-AGC- CGUAAA-aca 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ac(uuac)a ----ccauaa 2701 a-u|--C|GC C-UGAG-AAC UACGAGC(-- -ACAC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|ACGGUG- UCCCA---UC CAACUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUG-UA|UA- 3121 |CC|-UC--C |G------UC GA-AA|G-CU UAC-|CCU(G --UGA)AUG- -----(auc- 3181 au-)------ U-AGUAAGCA AuA-GGGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuaccc- 3781 ---------A CCAAAA-CGU C-AGGUCAAG G|UGCA|GCU UAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ac---)---- ---------- ---------- UAG-AACAA- 4021 ---------- ------ACGA --AAaga-uc u-g(------ ---------- ---------- 4081 ---------- --------ca UGAAA--ca) c-ag----uc -a--UGAGG- -GCGGAUUUA 4141 G-U--AGUAA A-AAGAAA(- auaga-gu-- --)GUUCUUU U-UAN----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCG--AGCA 4261 CUGGGA-CG- UGUACACA-C -CGCCCGUCA U-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gauaacaau- 4381 acaac-au-- gu-------- -cuaua---- --------ac acgcuaacga acaua----- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG-U AUA-CU(GGA 4621 -A)AGU-GU- ACUUGGAAUA A--------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.stelz 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Melanophryniscus stelzneri.; . ACCESSION U52743 KEYWORDS . SOURCE Mitochondrion Melanophryniscus stelzneri. ORGANISM Mitochondrion Melanophryniscus stelzneri. REFERENCE 1 (bases 1 to 869) AUTHORS Graybeal,A. TITLE radiation Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 869) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52743 BASE COUNT 281 a 214 c 166 g 208 t 4344 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg acccuaaaaa guccuuuaaa caCAAAGGUU 661 (UGG-)U-CC U|AGCCU-UG AAG-UCAGUU -A-UUAC-UU |AA-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCUCCCUGU GAAAA---CG C|CCU-Uuaa --ac-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--ccacu a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCAC---- -----(aaua -u-------- ---------- ---------- ------)--- 1381 ---ua|---u GCCCA--AGA C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AUuu---C-A 1501 GCA|GUG-AU UAACAUUGAA U--aUUAGC( ---------- ----GUCA)G CUAGA-UUC| 1561 A|-GUUA-A- AG-UAAaa-a ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGC 1921 -AAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCACG|--- uGGC-CCA-- 1981 AAUUG-AUUU C------c-c auCGGC|GUA AAGCGUGAUU -U-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------a -cacaacaua u-ugaa--gu -----|UAAA cua-aa-acu ---AAGCU(G 2341 UGACA)CGCu --------ug ucu-uuaa-G AAG------- ----cccaaa -aAC(-GAAA 2401 -)GU|u---- ----acuuca auuaauu-ca a--------- cuu-gaacCC ACGAC-AGCU 2461 A-GGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CGUAA--cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(uuac)a -----ucuua 2701 a-c|--C|GC C-UGGG-AAC UACGAGC(-- --uaa--)GC UUA--AAA-C CAAAGGAC-U 2761 UG|ACGGUA- CCCCAua-uc ccCCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUU A-ACCUUACC AUUUUUAGCU ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(aaa- 3181 cc-)------ U-AGUGAGCu uaa-ugcc-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ucuac- 3781 ---------A CCAAUA-CGU C-AGGUCAAG G|UGCA|GUA AAU------- ---------G 3841 A-A-AU-GG- AA-AGA--GA -UGGGCUACA CU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a uc---)---- ---------- ---------- UAG-AAGAU- 4021 ---------- ------ACGA --AAAAC-UA A-C(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) C-CU-A--GU -U--GGAAG- -GCGGAUUUA 4141 G-U--AGUAA A-AAGAAA(- caaua-ga-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ccc-ggcac 4261 -UGGGG-UG- UGUACACA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaa~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.O.guaca 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Osornophryne guacamayo.; . ACCESSION U52744 KEYWORDS . SOURCE Mitochondrion Osornophryne guacamayo. ORGANISM Mitochondrion Osornophryne guacamayo. REFERENCE 1 (bases 1 to 874) AUTHORS Graybeal,A. TITLE alternate macroevolutionary hypotheses characterizing their radiation Phylogenetic relationships of bufonid frogs and tests of JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 874) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52744 BASE COUNT 236 a 182 c 138 g 167 t 4490 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------a accauaaaaa guccuuuaaa caUAAAAGCU 661 (UGG-)U-CC U|GGCCU-UG CAG-UCAAUU -A-UUAC-UU |AA-UU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- cCCGCCCCGU GAAAA---CG C|CCU-Unaa --nc-u---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuccu a----)---- 1261 ---------- ---------- ---g--gaa- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACg--- -----(aaac -c-------- ---------- ---------- ------)--- 1381 ---uc|---u GCCCA--AAA C|ACCUA-GC --|------- (-unn--)-- -------GC| 1441 CACA------ ---------- ---------- -|-UUCN--( NNAG-)--GG AAcu---C-A 1501 GCA|GUG-AU UAACAUUAAU U--aUGAGC( ---------- ----GCAA)G CUCA--AUU| 1561 A|-GUUA-A- AG-UAAcacu a--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCAUG|--- aGGN-NNA-- 1981 AAUUG-ACCA C--------a auCGGN|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------c -uaucnnaua gaauuaaaau -----|AAAA cug-ag-ccg ---UGAAN(N 2341 NNNNN)NNNn --------nn nn-nnnnn-N NNN------- ----nnnnnn -nNN(-NNNN 2401 -)NN|n---- ----nnnnnn nnnnnnn-nn n--------- nnn-nnnnNN NNNNN-NNNN 2461 N-NNN---NN NNNNNNNNN( NNNNNNNNN) NNNN-NNNN| -NNNN-NNN- NNNNNN-nnn 2521 n--nn----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --n(nnnn)n -----nnnnn 2701 n-u|--C|GC C-AGGG-AAC UACGAGC(-- --uaa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAca-uc ccCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUU A-ACCUCACC AUUUCUAGC- ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(A --UGA)GCG- -----(cua- 3181 aca)------ c-AGUAAGCc uaa-uguu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----auuuc- 3781 ---------A CCCACA-CGU C-AGGUCAAG G|UGCA|GCU AAU------- ---------G 3841 A-A-AA-GG- AA-AGA--AA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aa---)---- ---------- ---------- UAG-AAAAC- 4021 ---------- ------ACGA --AGAAC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AU-A--GU -U--UAAAG- -GCGGAUUUA 4141 G-A--AGUAA A-AAGGAA(- ucagc-au-- --)GUCCAUU C-UUA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -cucggguac 4261 -UGGGG-UAu UGUACACA-C -CGCCCNGUC A-CC---CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< uucaaa~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.lemur 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Peltophryne lemur.; . ACCESSION U52738 KEYWORDS . SOURCE Mitochondrion Peltophryne lemur. ORGANISM Mitochondrion Peltophryne lemur. REFERENCE 1 (bases 1 to 945) AUTHORS Graybeal,A. TITLE radiation Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 945) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52738 BASE COUNT 297 a 235 c 182 g 219 t 4280 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg acccuaaaaa guccuuuaaa caCAAAGGUU 661 (UGG-)U-CC U|GACCU-UG AAG-UCAGUU -A-UUAC-UU |AA-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAAAA---CG C|CCU-Uaaa --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuccu -----)---- 1261 ---------- ---------- ---g--gga- --cAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACg--- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ----c|---c GCCCA--AGA C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAau---C-A 1501 GCA|GUG-AU UAACAUUGAG C--aUUAGC( ---------- ----GAAA)G CUUGA-CUC| 1561 A|-GUUA-A- AG-UAAaa-a ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGUG-G(-CC AGCCGCC-GC -GGU-UA)-C ACNACG|--- uGGC-UCN-- 1981 AAUUG-ACCU C--------u ucNGGC|GUN AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -cauuccuac acuaga--gu -----|UAAA cua-gg-acu ---AAGCU(G 2341 UGACA)CGCc --------ug uccaccaa-G AAA------- ----cucana -nNC(-GNNA 2401 -)GU|c---- ----acucua auuuaac-cc a--------- cuu-gaacUC NCGAC-AGUU 2461 A-GGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AAU- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(uuac)a -----cccau 2701 a-u|--C|GC C-AGGG-AAC UNCGAGC(-- --caa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAca-uc caCCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAAUCC 2821 Aa-------- ----)CGUUU A-ACCUCACC AUUUCUUGUU ---------- ---------- 2881 (-------aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GNG- -----(acu- 3181 au-)------ C-AGUGAGCu uaa-uguu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ucuac- 3781 ---------A CCAGUA-CGU C-AGGUCAAG G|UGCA|GCA UAU------- ---------G 3841 A-A-AU-GG- GA-AGA--GA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAG-AAGAA- 4021 ---------- ------ACGA --AAAAC-UA U-U(------ ---------- ---------- 4081 ---------- --------ua UGAAAa---) U-CU-A--GU -U--AGAAG- -GCGGAUUUA 4141 G-U--AGUAA A-AAGAAA(- ucagc-au-- --)GUUCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCu-ggcac 4261 -UGGGG-UG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaagcu-uc- 4381 cagca-ca-- au-------- -cuuua---- --------au caa-cuaaag cacaac---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG-U AUA-CC(GG~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.caren 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Schismaderma carens.; . ACCESSION U52742 KEYWORDS . SOURCE Mitochondrion Schismaderma carens. ORGANISM Mitochondrion Schismaderma carens. REFERENCE 1 (bases 1 to 879) AUTHORS Graybeal,A. TITLE radiation Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 879) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52742 BASE COUNT 282 a 219 c 169 g 209 t 4334 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg acccuaaaaa guccuuuaaa caCAAAGGUU 661 (UGG-)U-CC C|AACCU-UG UAG-UCAGUU -A-UUAC-UU |AA-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCUCCCUGU GAAAA---CG C|CCU-Ucac --uc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cuacu a----)---- 1261 ---------- ---------- ---g--gga- --cAAGGUAC |--------- uGGUAUCA-- 1321 -GGCACg--- -----(auua -u-------- ---------- ---------- ------)--- 1381 ----c|---u GCCCA--AGA C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AC UAACAUUGAG C--aUUAGC( ---------- ----GAAA)G CUUGA-CUC| 1561 A|-GUUA-A- AG-UAAac-a ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCAAG|--- uGGC-UCA-- 1981 AAUUG-ACUU C--------a uuCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -cuacaucua c-uaga--gu -----|UAAA cua-aa-acu ---AAGCU(G 2341 UGACA)CGCu --------ug uucauuau-G AAA------- ----uucaua -gAC(-GAAG 2401 -)GU|u---- ----acucua acaaaau-ca a--------- cuu-gaacUC ACGAC-AGUC 2461 G-GGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-GAU- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(uuac)a -----ccuca 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --caa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAua-uc ccCCUAGA|G GAGCCUGU-U |CUUUA--AU CG(AUAACCC 2821 A--------- ----)CGUUU A-ACCUCACC CUUUCUAGUU ---------- ---------- 2881 (-------ac u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(aaa- 3181 au-)------ U-AGUGAGCa caa-ugcu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----auuuc- 3781 ---------A CCAAUA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--AA -UGGGCUACA CU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aca--)---- ---------- ---------- UAG-AGGAA- 4021 ---------- ------ACGA --AAAAC-UA C-A(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) U-CU-A--GU -U--GGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGGAA(- ucaac-au-- --)GUUCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -uuc-ggcac 4261 -UGGGG-UG- UGUACACA-A -CGGCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaaa--ua- 4381 ca~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.H.regil 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Hyla regilla.; . ACCESSION U52737 KEYWORDS . SOURCE Mitochondrion Hyla regilla. ORGANISM Mitochondrion Hyla regilla. REFERENCE 1 (bases 1 to 879) AUTHORS Graybeal,A. TITLE Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their radiation JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 879) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52737 BASE COUNT 290 a 218 c 155 g 211 t 4339 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gauga acccuaaaaa guucuuuaag caCANAGGUU 661 (UGG-)U-CC U|AGCCU-UG AAA-UCAAUU -A-UUAC-UU |AA-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCUGU GAAAA---CG C|CCU-Uuac --cu-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--ccacc a----)---- 1261 ---------- ---------- ---g--aaa- --uAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACa--- -----(auca -u-------- ---------- ---------- ------)--- 1381 ----u|---a GCCCA--AGA C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAuu---C-A 1501 GCA|GUG-AU UAACAUUGAA C--aUAAGC( ---------- ----GACA)G CUUGA-CUC| 1561 A|-GUUA-A- A--UAAaa-a ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GA-CC|-GGC 1921 -AGG-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C NCCAUG|--- aGGC-UCA-- 1981 AAUUG-AUCU U--------u uuCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u uaucaaaaua auuaua--gu ---ug|UAUU uaa-aa-acu ---AAGCC(G 2341 UAAUA)CGCu --------ug ucu--uuaaG AAA------- ----cucaaa -aAC(-GAAA 2401 -)GU|u---- ----acuaua uucaccc-ca a--------- cuu-gaacCC ACGAC-AGCU 2461 A-GAA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CGUAAA-cuu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(uuac)a -----cuuac 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --aaa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGNUA- CCCCAca-uc caCCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAACCC 2821 C--------- ----)CGCUA A-ACCUCACC AUUUUUGGUU ---------- ---------- 2881 (-------aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CUC(G --UGA)GCG- -----(auc- 3181 ua-)------ U-AGUGAGCu uaa-uguc-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacac- 3781 ---------G UCAAUA-CGU C-AGGUCAAG G|UGCA|GUA AAU------- ---------A 3841 A-A-AU-GG- AA-AGA--GA -UGGGCUACA CU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ua---)---- ---------- ---------- UAG-AAUAU- 4021 ---------- ------ACGA --AAGAC-UA U-A(------ ---------- ---------- 4081 ---------- --------ua UANNA----) C-CU-A--GU -C--AAAAG- -GCGGAUUUA 4141 G-U--AGUAA A-AAGAGA(- ccauu-aa-- --)GCUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -Cac-ggcac 4261 -UGGGG-UG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aa-----u-- 4381 -acca-aa~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.ornat 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Ceratophrys ornata.; . ACCESSION U52739 KEYWORDS . SOURCE Mitochondrion Ceratophrys ornata. ORGANISM Mitochondrion Ceratophrys ornata. REFERENCE 1 (bases 1 to 942) AUTHORS Graybeal,A. TITLE Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their radiation JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 942) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52739 BASE COUNT 310 a 235 c 182 g 213 t 4273 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg acccuaaaaa guccucuaaa caCAAAGGUU 661 (UGG-)U-CC U|AGCCU-UG AAA-UCAAUU -U-CUAC-UC |AA-UA--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCUGU GAAAA---CG C|CCU-Uaaa --uc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--ccauu a----)---- 1261 ---------- ---------- ---g--gga- --uAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACg--- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ----c|---u GCCCA--AGA C|ACCUA-GC --|------- (-uau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAau---C-A 1501 GCA|GUG-AU UAACAUUGAA U--aUAAGC( ---------- ----GACA)G CUUGA-UUC| 1561 A|-GCUA-G- AG-UAAag-a ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -UAA-U---C UGGU-G(-CC AGCCGCC-GC -GGU-UA)-C ACCAUG|--- uGGC-UCA-- 1981 AAUUG-ACUU U------c-c auCGGC|GUA AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u ucaacaaaaa auuaga--au -----|UAAA cuu-aa-acu ---AAGCU(G 2341 UGACA)CGCu --------ug uuauuaag-G AAA------- ----cccaaa -aAC(-GAAA 2401 -)GU|u---- ----auucca acuaagu-ca a--------- cuu-gaacUC ACGAC-AGCU 2461 G-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCC-AGC- CGUAAA-cuu 2521 u--aa----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(uuac)c ----uucaac 2701 a-u|--C|GC C-AGGG-AAC UACGAGC(-- --aaa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUA- CCCCAua-uc ccCCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAACCC 2821 C--------- ----)CGUUU A-ACCUCACC AUUUCUAGUU ---------- ---------- 2881 (-------aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-CU UAC-|CAC(G --UGA)GCG- -----(cca- 3181 cu-)------ U-AGUGAGCu uaa-uguc-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ccuac- 3781 ---------A CCAACA-CGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 U-A-AU-GG- GA-AGA--GA -UGGGCUACA CU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- UAG-AGGAC- 4021 ---------- ------ACGA --AAGAC-UA C-U(------ ---------- ---------- 4081 ---------- --------ua UGAAG----) C-CU-A--GU -C--AGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-AAGAAA(c ccaga-gu-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -cuc-ggcac 4261 -UGGGG-UG- UGUACACA-C -CGCCCGUCA C-CCU--UUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gaagc--c-- 4381 aagaa-aa-a gu-------- -auuua---- --------ac caa-ucauag cacaau---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUNGUAAN-U AU~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.E.cunea 5213 bp RNA RNA 01-MAY-1998 DEFINITION Mitochondrion Eleutherodactylus cuneatus.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. ACCESSION Y10944 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. SOURCE Mitochondrion Eleutherodactylus cuneatus. ORGANISM Mitochondrion Eleutherodactylus cuneatus. REFERENCE 1 (bases 1 to 2627) AUTHORS Feller,A.E. and Hedges,S.B. TITLE Molecular evidence for a Salamander-Caecilian clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2627) AUTHORS Hedges,B. TITLE Direct Submission JOURNAL Submitted (03-FEB-1997) B. Hedges, Pennsylvania State University, Dept. Biology, 208 Mueller Lab., University Park, PA 16802, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y10944 BASE COUNT 313 a 235 c 194 g 207 t 4264 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---AAGGGCU 661 (UGG-)U-CC U|GGCCU-UG UGG-UCAAUU -U-UUAC-UU |AG-CC--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAUCCCUGU GAAAA---AG C|CCG-U-ua --au-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uuaug -----)---- 1261 ---------- ---------- --ga--uua- ---AAGGAGC |--------- aGGUAUCA-- 1321 -GGCACa--- -----(auca -u-------- ---------- ---------- ------)--- 1381 ----c|---u GCCCA--AGA C|ACCUA-GC --|------- (-cac--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG ACccc--c-A 1501 GCA|GUG-AU CAAUAUUGAG c--aUAAGC( ---------- ----GACA)G CUUGA-CUC| 1561 A|-GUUA-A- AG-UGAguaa ca-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGCC|-GGC 1921 -AAA-C---U UAGU-G(-CC AGC-GCC-GC -GGC-UA)-C ACUACA|--- gGGC-UCA-- 1981 AAUUG-ACCG C--------c gaCGAC|GUA AAGCGUGAUU -A-aag-|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------ag auguaccucc gcuaga--gc -----|uaaa ccc-ag-auu ---agAUC(G 2341 UGACA)CAUu --------ua uccg-ggg-g -ag------- ----acacac -aAC(-GAAA 2401 -)GU|c---- ----gcucua ccuaauu-ca a--------- cuu-gaacAC ACGAA-AACG 2461 A-GAA---UA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -G-CU-CGA- UCGCAAAcu- 2521 ---cu----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a -ac(uuac)a c-----ccca 2701 a-u|--C|GU C-aGGG-AAA UACAAGC(-- --aaa--)GC UUU--AAACC CAAAGGAC-U 2761 UG|ACGGUA- UUCCACA-UC CCCCUAGA|G GAGCCUGU-C |CAAUA--AU CG(AUAACCC 2821 U--------- ----)CGCUU U-ACCUCACC ACAUCUUGC- ---------- ---------- 2881 (-------uu au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---c---AGC CUG-UA|UA- 3121 |CU|-UC--C |G------UC GU-AA|G-UA AGC-|CAC(A --UGA)AUG- -----(aac- 3181 cu-)------ U-AGUAAGCC CAA-UGUC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)ua cacauaaaug 3781 uguugaac-A ACAAUA-CGU C-AGGUCAAG G|UGCA|GCG GAU------- ---------G 3841 A-U-GU-GG- AA-UGU--GA -UUGGCUACA CU--UUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a -cu--)---- ---------- ---------- UAA-AAgaa- 4021 ---------- ------ACGG --AAGAC-AA A-A(------ ---------- ---------- 4081 ---------- --------aa UGAAA----) C-UC-U--GU -C--AGAAG- -GCGGAUUUA 4141 G-A--AGUAA G-AAAAAG(- auauc-au-- --)AUUUUUC U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- uaag--GGCA 4261 CUGGAG-UA- UGUACAAA-C -CGCCCGUCA C-CCU--CCU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gaaaaucua- 4381 a-----acca gu-------- -acuua---- --------ac ccacaaauaa gaauaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAGG-AGG-U AAGUCGUAAC ACGGUAAG-C GUA-CC(GGA 4621 -A)GGU-GC- UCUUGGAU-- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.L.penta 5213 bp RNA RNA 29-APR-1998 DEFINITION Mitochondrion Leptodactylus pentadactylus.; . ACCESSION U52741 KEYWORDS . SOURCE Mitochondrion Leptodactylus pentadactylus. ORGANISM Mitochondrion Leptodactylus pentadactylus. REFERENCE 1 (bases 1 to 891) AUTHORS Graybeal,A. TITLE radiation Phylogenetic relationships of bufonid frogs and tests of alternate macroevolutionary hypotheses characterizing their JOURNAL Zool. J. Linn. Soc. 119, 297-338 (1997) STANDARD No information REFERENCE 2 (bases 1 to 891) AUTHORS Graybeal,A. TITLE Direct Submission JOURNAL Submitted (27-MAR-1996) Anna Graybeal, Department of Zoology, University of Texas, Austin, TX 78712, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U52741 BASE COUNT 193 a 166 c 124 g 138 t 4592 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- -----gaugg acccuaaaaa guccuuuaaa caCAAAGGUU 661 (UGG-)U-CC U|GACCU-UA AAA-UCAAUU -G-UUAC-NU |AA-CU--NA -CAC-A-UGC 721 -NAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACUCCUGU GAGAA---CA C|CCU-Uuaa --cc-c---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cnuua a----)---- 1261 ---------- ---------- ---g--ggg- --aAAGGAGU |--------- uGGUAUCA-- 1321 -GGCUCa--- -----(aaca -u-------- ---------- ---------- ------)--- 1381 ----u|---a GCCCG--AGA C|ACCUA-GC --|------- (-uag--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCA--( CAAG-)--GG AAcu---C-A 1501 GCA|GUG-AU UAACAUUGAA U--aUAAGC( ---------- ----GAUA)G CUUGA-UUC| 1561 A|-NNNN-N- NN-NNNnnnn nnnnnnnnn- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- NNNNN|-NNN 1921 -NNN-N---N NNNN-N(-NN NNNNNNN-NN -NNN-NN)-N NNNNNN|--- nNNN-NNN-- 1981 NNNNN-NNNN N------n-n nnNNNN|NNN NNNNNNNNNN -N-nnn---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------n -nnnnnnnnn n-nnnn--nn -----|NNNN nnn-nn-nnn ---NNNNN(N 2341 NNNNN)NNNn --------nn nnnnnnnn-N NNN------- ----nnnnnn -nNN(-NNNN 2401 -)NN|n---- ----nnnnnn nnnnnnn-nn n--------- nnn-nnnnNN NNNNN-NNNN 2461 N-NNN---NN NNNNNNNNN( NNNNNNNNN) NNNN-NNNN| -NNNN-NNN- NNNNNN-nnn 2521 n--na----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(uuac)a -----cccac 2701 a-u|--C|GC C-AGGG-AGC UACGAGC(-- --caa--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGCA- CCCCAau-uc ccUCUAGA|G GAGCCUGU-C |CUGUA--AU CG(AUAACCC 2821 C--------- ----)CGCUU A-ACCUCACC ACUUCUAGCA ---------- ---------- 2881 (-------aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-CA|G-NU UAC-|CUC(G --UGA)GCG- -----(ccu- 3181 uu-)------ A-AGUGAGCC CAA-UGCC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aauac- 3781 ---------G CCAAUA-CGU C-AGGUCAAG G|UGCA|GCU AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--GA -UCGGCUACA CU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uua--)---- ---------- ---------- UAG-AAAAA- 4021 ---------- ------ACGA --AAGAC-CA C-U(------ ---------- ---------- 4081 ---------- --------ua UGAAA----) C-CU-G--GU -C--AGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-AAGAG-(- acaua-gu-- --)GCUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -cccgggaac 4261 -UGGGG-UG- UGUACACA-C -CGCCCGUCA C-C-U--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaagn--cu- 4381 uaac~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.madag 5213 bp RNA RNA 22-SEP-1998 DEFINITION Mitochondrion Aglyptodactylus madagascariensis.; . ACCESSION AF0263 1 KEYWORDS . SOURCE Mitochondrion Aglyptodactylus madagascariensis. ORGANISM Mitochondrion Aglyptodactylus madagascariensis. REFERENCE 1 (bases 1 to 565) AUTHORS Richards,C.M. and Moore,W.S. TITLE A Molecular Phylogenetic Study of the Old World Treefrog Family Rhacophoridae JOURNAL Herpetol. J. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 565) AUTHORS Richards,C.M. and Moore,W.S. TITLE Direct Submission JOURNAL Submitted (23-SEP-1997) Biology, Wayne State University, Detroit, MI 48202, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF026341 BASE COUNT 149 a 114 c 102 g 129 t 4719 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|-~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~GCCC-AGC- CGUAAA-a-a 2521 uu-aa----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(ucuc)u cc----cacu 2701 a-g|--C|GC C-UGGG-UAU UACGAGC(-- --gcua-)GC UUA--AAAUC CAAAGGAC-U 2761 UG|ACGGUG- UCCCA---CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 U--------- ----)CGUUA U-ACCUCACC AUUUCUCGCU ---------- ---------- 2881 (-------uu u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-AA|G-CU UAC-|CGU(A --UGA)AUG- -----(ucu- 3181 aa-)------ C-AGUAGGUU AAA-UGGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -uuccuacc- 3781 ---------G CCAAUA-CGU C-AGGUCAAG G|UGCA|GCC AAU------- ---------G 3841 A-A-AU-GG- GA-AGC--AA -UGGGCUACA AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a uu---)---- ---------- ---------- UAG-AACAA- 4021 ---------- ------ACGG --AAUAC-UA C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) c-au-a--gu -c-AuGAAG- -GCGGAUUUA 4141 G-U--AGUAA A-AGGAAA(- nuaga-gu-- --)GUUCCUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- cnna--ggcu 4261 CUGGGA-CG- UGUACAAA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -gauaguaaa 4381 uaaac-uguu cuuaacauca ucuaagcguc uu-------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAuua a--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.Arth.sp 5213 bp RNA RNA 16-DEC-1998 DEFINITION Mitochondrion Arthroleptis sp.; . ACCESSION AF0953 4 KEYWORDS . SOURCE Mitochondrion Arthroleptis sp. ORGANISM Mitochondrion Arthroleptis sp. REFERENCE 1 (bases 1 to 513) AUTHORS Emerson,S.E., Richards,C.M., Drewes,R.C. and Kjer,K.M. TITLE On the relationships among ranoid frogs: a review of the evidence JOURNAL Herpetologica (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 513) AUTHORS Emerson,S.E., Richards,C.M., Drewes,R.C. and Kjer,K.M. TITLE Direct Submission JOURNAL Submitted (21-SEP-1998) Biology, Wayne State University, Detroit, MI 48202, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF095344 BASE COUNT 151 a 87 c 85 g 117 t 4773 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|-~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ 2701 ~~c|--C|GC C-AGAG-UAC UACGAGU(-- -aacua-)AC UUA--AAAUU CAAAGGAC-U 2761 UG|ACGGCG- UCUCA---CC UACCUAGA|G GAGCCUGU-U |AUAUA--AC CG(AUAUUAC 2821 C--------- ----)CGAUA U-ACCUAACN ACUUUUUGCU ---------- ---------- 2881 (-------aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---c---AGU CUG-UA|UA- 3121 |CC|-UC--C |G------UC GC-CA|G-CU UAC-|CGU(A --UGA)AUG- -----(uua- 3181 au-)------ U-AGUGAGCC AAA-UGAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---caccuc- 3781 ---------A UCAAUA-NDD N-VGGUCAAG G|UGCA|ACC CAC------- ---------A 3841 A-A-GU-GG- UA-AGA--AA -UGGGCUACA GU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a cu---)---- ---------- ---------- UAG-AACAU- 4021 ---------- ------ACG- --aauag-uc a-u(------ ---------- ---------- 4081 ---------- ---------a ugaaa----) a-au-g--ac -a-auGAAG- -GUGGAUUUA 4141 G-U--AGUAA GgGGUAAA(- u-aga-gu-- --)GUUCCCC U-UAA----- ---------- 4201 ---------- ---------- ---------u ccagcaauga gacgugUNNN -NNN--NNNN 4261 NNNNNN-NN- NNNNNNNN-N -NNNNNNNNN N-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaucaaauau 4381 acuuc-aguc uauaaauccu auaauacuaa ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-U AAGUCGUAAC AUGGUAAG-U AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGAAca a--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.varia 5213 bp RNA RNA 16-DEC-1998 DEFINITION Mitochondrion Arthroleptis variabilis.; . ACCESSION AF0953 3 KEYWORDS . SOURCE Mitochondrion Arthroleptis variabilis. ORGANISM Mitochondrion Arthroleptis variabilis. REFERENCE 1 (bases 1 to 653) AUTHORS Emerson,S.E., Richards,C.M., Drewes,R.C. and Kjer,K.M. TITLE On the relationships among ranoid frogs: a review of the evidence JOURNAL Herpetologica (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 653) AUTHORS Emerson,S.E., Richards,C.M., Drewes,R.C. and Kjer,K.M. TITLE Direct Submission JOURNAL Submitted (21-SEP-1998) Biology, Wayne State University, Detroit, MI 48202, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF095343 BASE COUNT 174 a 121 c 87 g 113 t 4718 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|-~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~GCUU-AAU- CGUAAA-aua 2521 uu-ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(ccac)a a-----cuuc 2701 aac|--C|GC C-AGAG-CAC UACGAGU(-- -aacua-)AC UUA--AAACU CAAAGGAC-U 2761 UG|ACGGCG- UCUCA---CC UACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUACCCC 2821 C--------- ----)CGAUA C-ACCUAACC ACUUUUUGCU ---------- ---------- 2881 (-------aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---c---AGU CUG-UA|UA- 3121 |CC|-UC--C |G------UC GC-AA|G-CU UAC-|CAU(A --UGA)AUG- -----(uua- 3181 au-)------ U-AGUAAGCA AAA-AGGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---caccac- 3781 ---------A CCAAUA-CGU C-AGGUCAAG G|UGCA|ACC CAC------- ---------A 3841 A-A-GU-GG- UA-AGA--AA -UGGGCUACA CU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a uu---)---- ---------- ---------- UAG-AAAAU- 4021 ---------- ------ACG- --aauag-uc a-u(------ ---------- ---------- 4081 ---------- ---------a ugaaa----) a-au-g--ac -a-auGAAG- -GCGGAUUUA 4141 G-u--AGUAA GgGGCAAA(- u-aga-gc-- --)GUCCCCC U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--AGCA 4261 AUGAGA-cG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaucaaacaa 4381 cuuua-guuu auaacacucc acaacaccaa ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG-U AUA-CU(GGA 4621 -A)AGU-GU- ACUUGGAAca a--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.Scho.sp 5213 bp RNA RNA 16-DEC-1998 DEFINITION Mitochondrion Schoutedenella sp.; . ACCESSION AF0953 5 KEYWORDS . SOURCE Mitochondrion Schoutedenella sp. ORGANISM Mitochondrion Schoutedenella sp. REFERENCE 1 (bases 1 to 606) AUTHORS Emerson,S.E., Richards,C.M., Drewes,R.C. and Kjer,K.M. TITLE On the relationships among ranoid frogs: a review of the evidence JOURNAL Herpetologica (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 606) AUTHORS Emerson,S.E., Richards,C.M., Drewes,R.C. and Kjer,K.M. TITLE Direct Submission JOURNAL Submitted (21-SEP-1998) Biology, Wayne State University, Detroit, MI 48202, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF095345 BASE COUNT 161 a 100 c 80 g 123 t 4749 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|-~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ 2701 ~~u|--C|GC C-AGAA-CAC UACAAGU(-- -aaaca-)AC UUA--AAAUU CAAAGGAC-U 2761 UG|ACGGCG- UCUCA---CC UACCUAGA|G GWGCCUGU-U |CUAUA--AU CG(AUAUUCC 2821 C--------- ----)CGAUA U-ACCCUACC ACUUUUUGCC ---------- ---------- 2881 (-------uu a--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- --uc---AGU CUA-UA|UA- 3121 |CC|-UC--C |G------UC GU-AA|G-CU UAC-|CAU(A --UGA)AUG- -----(uua- 3181 au-)------ U-AGUGAGCA WAA-AGAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---uuauac- 3781 ---------A CCCaUA-CGU C-AGGUCAAG G|UGCA|ACC UAA------- --------aA 3841 A-A-AU-GG- AA-UGA--AA -UGGGCUACA GU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a uu---)---- ---------- ---------- UAG-AACCU- 4021 ---------- ------ACG- --aauaa-uc a-c(------ ---------- ---------- 4081 ---------- ---------a ugaaa----) a-au-g--au -g-auGAAG- -GCGGAUUUA 4141 G-a--AGUAA GgAGUGAU(- u-aaa-au-- --)GCCCUCC U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU-aAGCA 4261 AUGAGA-CG- CGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aauacaaccu 4381 uuaac-uguu uauaaccaca cacuuuacua a--------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-U AAGUCGUAAC AUGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUUGAAua a--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.slate 5213 bp RNA RNA 16-DEC-1998 DEFINITION Mitochondrion Callulops slateri.; . ACCESSION AF0953 9 KEYWORDS . SOURCE Mitochondrion Callulops slateri. ORGANISM Mitochondrion Callulops slateri. REFERENCE 1 (bases 1 to 572) AUTHORS Emerson,S.E., Richards,C.M., Drewes,R.C. and Kjer,K.M. TITLE On the relationships among ranoid frogs: a review of the evidence JOURNAL Herpetologica (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 572) AUTHORS Emerson,S.E., Richards,C.M., Drewes,R.C. and Kjer,K.M. TITLE Direct Submission JOURNAL Submitted (21-SEP-1998) Biology, Wayne State University, Detroit, MI 48202, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF095339 BASE COUNT 165 a 120 c 100 g 109 t 4719 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|-~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~GCUU-AGC- CGUAAA-aua 2521 uu-aa----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(uuac)a c-----cuaa 2701 c-c|--C|GC C-AAGG-AAU UACGAGC(-- --ccaa-)GC UUA--AAACC UAAAGGAC-U 2761 UG|ACGGUG- UCCCA---UC CCCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUUCUCC 2821 C--------- ----)CGAUA A-ACCUCACC AUCUCUUGAU ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GC-AA|G-CU UAC-|CAU(G --UGA)a-g- -----(gua- 3181 cu-)------ U-AGUGAGCU UAAAGGUU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aaua- 3781 ---------A CCAGAA-CGC C-AGGUCAAG G|UGCA|GCC UAC------- ---------G 3841 A-G-AA-GG- GA-AGA--AA -UGGGCUACA AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AACAA- 4021 ---------- ------ACGG --AAAGC-Ug c--(------ ---------- ---------- 4081 ---------- ---------a ugaaa----) c-ac-a--gc -uauuGAAG- -GCGGAUUUA 4141 G-U--AGUAA A-AAGAAA(- auaga-ga-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCC 4261 CUGGGA-CG- CGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaccaucu- 4381 au-------- -acaauguca cuaacguuac --------ac aaa-ccaaac nnnnnn---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC ACGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGAAca a--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.Copi.sp 5213 bp RNA RNA 16-DEC-1998 DEFINITION Mitochondrion Copiula sp.; . ACCESSION AF0953 0 KEYWORDS . SOURCE Mitochondrion Copiula sp. ORGANISM Mitochondrion Copiula sp. REFERENCE 1 (bases 1 to 383) AUTHORS Emerson,S.E., Richards,C.M., Drewes,R.C. and Kjer,K.M. TITLE On the relationships among ranoid frogs: a review of the evidence JOURNAL Herpetologica (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 383) AUTHORS Emerson,S.E., Richards,C.M., Drewes,R.C. and Kjer,K.M. TITLE Direct Submission JOURNAL Submitted (21-SEP-1998) Biology, Wayne State University, Detroit, MI 48202, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF095340 BASE COUNT 126 a 99 c 69 g 88 t 4831 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|-~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~GCUU-AGC- CAUAAA-aca 2521 uu-ca----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(ccac)a c-----uuaa 2701 c-c|--C|GC C-AGGA-AAU UACGAGC(-- --c-aa-)GC UUA--AAAUC CAAAGGAC-U 2761 UG|ACGGUG- CCCCA---UC CAUCUAGA|G GAGCCUGU-U |CCAUA--AU CG(AUCUUCC 2821 C--------- ----)CGAUC A-ACCUUACC GUUUCUUGAC ---------- ---------- 2881 (-------ac c--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -----cccuc cccc---AGU CUG-UA|UA- 3121 |CC|-UC--C |G------UC GC-AA|G-CU UAC-|CAU(A --UGA)CUG- -----(cgc- 3181 au-)------ A-AUGGGCUA AACGAGUU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uaac- 3781 ---------A CCCCAcaCGA C-AGGUCAAG G|UGCA|GCc uac------- ---------G 3841 A-A-AC-GG- AA-AAA--AA -UGGGCUACA AU--UUCUN- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uc---)---- ---------- ---------- UAG-AACAA- 4021 ---------- ------ACAG --AAAAC-UA C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-CU-A--GU -Aauu-AAG- -GAGGAUUUA 4141 G-U--AGUAA A-AAGAAA(- auaga-gc-- --)G-UCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCU 4261 AUGGGC-AAg U~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~~ 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.H.marmo 5213 bp RNA RNA 16-DEC-1998 DEFINITION Mitochondrion Hemisus marmoratus.; . ACCESSION AF0953 9 KEYWORDS . SOURCE Mitochondrion Hemisus marmoratus. ORGANISM Mitochondrion Hemisus marmoratus. REFERENCE 1 (bases 1 to 397) AUTHORS Emerson,S.E., Richards,C.M., Drewes,R.C. and Kjer,K.M. TITLE evidence On the relationships among ranoid frogs: a review of the JOURNAL Herpetologica (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 397) AUTHORS Emerson,S.E., Richards,C.M., Drewes,R.C. and Kjer,K.M. TITLE Direct Submission JOURNAL Submitted (21-SEP-1998) Biology, Wayne State University, Detroit, MI 48202, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF095349 BASE COUNT 128 a 96 c 72 g 98 t 4819 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|-~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~GUUU-AGC- CGUAAA--ua 2521 a---a----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(uuac)a c----cccca 2701 aca|--C|GC C-AAAG-GNU UACAAGU(-- --gcaa-)GC CUA--AAACU U-AAGGAC-U 2761 UG|ACGGUG- UCUCA---UC CUCCUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAACCC 2821 C--------- ----)CGAUA U-ACCCGACU GCUUUUUGCC ---------- ---------- 2881 (-------uc u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GA-AA|G-CU UAC-|CUU(G --UGA)AAG- -----(cca- 3181 cu-)------ U-AGUGAGCC AAU-AGGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---uauuac- 3781 ---------G CCAUUA-UGU C-AGGUCAAG G|UGCA|GCc aau------- ---------a 3841 u-a-gc-ag- -c-AGA--GA -UGGGCUACA gU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAG-AAcau- 4021 ---------- ------ACAG --auggauuu cca(------ ---------- ---------- 4081 ---------- ---------a ugaaa----) --ca-g--ac -c--AGAAG- -GCGGAUUUA 4141 G-A--ANUAA A-AAGAAA(- -auaa-an-- --)AUUCCUU UuUAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGUC 4261 CGUUUA-GC- CGua------ ---------- ---------- -aauaaacuu acacccccaa 4321 c~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~-~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Ore.sp1 5213 bp RNA RNA 16-DEC-1998 DEFINITION Mitochondrion Oreophryne sp. 1.; . ACCESSION AF0953 1 KEYWORDS . SOURCE Mitochondrion Oreophryne sp. 1. ORGANISM Mitochondrion Oreophryne sp. 1. REFERENCE 1 (bases 1 to 560) AUTHORS Emerson,S.E., Richards,C.M., Drewes,R.C. and Kjer,K.M. TITLE On the relationships among ranoid frogs: a review of the evidence JOURNAL Herpetologica (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 560) AUTHORS Emerson,S.E., Richards,C.M., Drewes,R.C. and Kjer,K.M. TITLE Direct Submission JOURNAL Submitted (21-SEP-1998) Biology, Wayne State University, Detroit, MI 48202, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF095341 BASE COUNT 158 a 137 c 101 g 91 t 4726 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|-~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~GCUU-GGN- CGUAAA-aua 2521 uu-aa----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(ccac)a c-----ucaa 2701 a-c|--C|GC C-AGAG-AAC UACGAGC(-- --gcaa-)GC UUA--AAACU CAAAGGAC-U 2761 UG|ACGGUG- UCCCA---CC CACCUAGA|G GAGCCCGU-U |CUAUA--AU CG(AUAACCC 2821 C--------- ----)CGAUC C-ACCCUACC GCCUAUUACA ---------- ---------- 2881 (-------uu c--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---u---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GC-AA|G-CC UAC-|CGC(C --UGA)GCG- -----(cac- 3181 ca-)------ A-AGUAGGCC AAA-AGAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uagac- 3781 ---------A UCAACA-CGU C-AGGUCAAG G|UGCA|GCC CAU------- ---------G 3841 A-G-GC-GG- AA-AGA--AA -UUGGCUACA AU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c cc---)---- ---------- ---------- UAG-AACAA- 4021 ---------- ------ACGG --A-AAG-CU G-U(------ ---------- ---------- 4081 ---------- ---------u gcaac----) A-CA-G--CU Cu---GAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGAGA(- guaga-ga-- --)GCUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- --uu--GGCA 4261 CUGGGA-CG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaacaauac 4381 aacac-guua cuaacccaac auacauacgc ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC ACGGUAAG-C CUA-CU(GGA 4621 -A)AGU-GC- GCUUGGAAA- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.Ore.sp2 5213 bp RNA RNA 16-DEC-1998 DEFINITION Mitochondrion Oreophryne sp. 2.; . ACCESSION AF0953 2 KEYWORDS . SOURCE Mitochondrion Oreophryne sp. 2. ORGANISM Mitochondrion Oreophryne sp. 2. REFERENCE 1 (bases 1 to 674) AUTHORS Emerson,S.E., Richards,C.M., Drewes,R.C. and Kjer,K.M. TITLE On the relationships among ranoid frogs: a review of the evidence JOURNAL Herpetologica (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 674) AUTHORS Emerson,S.E., Richards,C.M., Drewes,R.C. and Kjer,K.M. TITLE Direct Submission JOURNAL Submitted (21-SEP-1998) Biology, Wayne State University, Detroit, MI 48202, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF095342 BASE COUNT 155 a 138 c 96 g 102 t 4722 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|-~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~GCUU-AGC- CGUAAA-aca 2521 uc-ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(ucac)a a-----uaaa 2701 a-c|--C|GC C-UGGG-AAU UACGAGC(-- --ccaa-)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUG- UCCCA---UC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUACCCC 2821 C--------- ----)CGAUC C-ACCCCACC GCCCCUUACA ---------- ---------- 2881 (-------aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- --uC---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GA-AA|G-CU CUC-|CGU(G --UGA)ACG- -----(c-a- 3181 cu-)------ U-AGUUAGCC CAA-AGAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuauc- 3781 ---------A UCCAAA-CGU C-AGGUCAAG G|UGCA|GCC AAU------- ---------G 3841 A-G-GC-GG- AA-AGA--AA -UUGGCUACA AU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c uu---)---- ---------- ---------- UAG-AACAA- 4021 ---------- ------ACGG --A-AGA-CC ACU(------ ---------- ---------- 4081 ---------- ---------- gcaac----) a-cg-g--uc au--uGAAG- -GCGGAUUUA 4141 G-U--AGUAA A-AAGAAA(- auaga-ga-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCG--AGCC 4261 CUGGGA-CG- CGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< caaucaucaa 4381 cnnuu-guac cuaacacuac acuucaacca c--------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC ACGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGAAca a--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.Prob.sp 5213 bp RNA RNA 22-SEP-1998 DEFINITION Mitochondrion Probreviceps sp.; . ACCESSION AF0263 5 KEYWORDS . SOURCE Mitochondrion Probreviceps sp. ORGANISM Mitochondrion Probreviceps sp. REFERENCE 1 (bases 1 to 538) AUTHORS Richards,C.M. and Moore,W.S. TITLE A Molecular Phylogenetic Study of the Old World Treefrog Family Rhacophoridae JOURNAL Herpetol. J. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 538) AUTHORS Richards,C.M. and Moore,W.S. TITLE Direct Submission JOURNAL Submitted (23-SEP-1997) Biology, Wayne State University, Detroit, MI 48202, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF026355 BASE COUNT 154 a 119 c 88 g 105 t 4747 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|-~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(acac)u -------auc 2701 a-c|--C|GC C-AGG--UAU UACGAGC(-- --aa-aa)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGNN- UCCCAc---c caCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(ACACCAC 2821 C--------- ----)CGCUA U-ACCCCACU GCUUUUUGCA ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GC-AA|G-CC UGC-|CAU(A --UGA)AKG- -----(ucu- 3181 ua-)------ A-AGCAAGCC CAA-UGAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ucayuc- 3781 ---------A CCCCAA-CGU C-AGGUCAAG G|UGCA|GCC CAC------- ---------A 3841 A-A-GC-AG- UU-CGA--AA -UGGGCUACA AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- UAG-AACAA- 4021 ---------- ------ACGA --AAGGC-CA C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-CU-A--GC -C-AUGAAG- -GCGGAUUUA 4141 G-U--AGUAA A-NAGAAA(- auaga-ga-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCA 4261 CUGGGA-CA- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aacacucua- 4381 uuaau-uguu au-------- -auaacaa-- --------au cuu---acua aaua------ 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AAGGUAAG-C GUA-CC(GGA 4621 -A)GGU-GC- GCUUGGcaua au-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.brevi 5213 bp RNA RNA 22-SEP-1998 DEFINITION Mitochondrion Scaphiophryne brevis.; . ACCESSION AF0263 7 KEYWORDS . SOURCE Mitochondrion Scaphiophryne brevis. ORGANISM Mitochondrion Scaphiophryne brevis. REFERENCE 1 (bases 1 to 557) AUTHORS Richards,C.M. and Moore,W.S. TITLE Family Rhacophoridae A Molecular Phylogenetic Study of the Old World Treefrog JOURNAL Herpetol. J. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 557) AUTHORS Richards,C.M. and Moore,W.S. TITLE Direct Submission JOURNAL Submitted (23-SEP-1997) Biology, Wayne State University, Detroit, MI 48202, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF026357 BASE COUNT 158 a 124 c 97 g 105 t 4729 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|-~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~gccg-uaa- aanauu---- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uau(ncac)a c------uaa 2701 a-c|--C|GC C-AGGG-A-U UACGAGC(-- ccaa---)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUG- UCCCAc---c caCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUUCUCC 2821 C--------- ----)CGAUA A-ACCUCACC GYUUCUAGCC ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-AA|G-CU UAC-|CAU(A --UGA)ACG- -----(cca- 3181 au-)------ U-AGUGAGCU UAA-AGAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --cuuuuuc- 3781 ---------A UCAACA-CGU C-AGGUCAAG G|UGCA|GCU CAC------- ---------G 3841 A-A-GC-GG- GA-AGC--AA -UGGGCUACA AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aa---)---- ---------- ---------- UAG-AACAC- 4021 ---------- ------ACGA --AAGAC-UA C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-AC-A--GU -C-AUGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGAAA(- auaga-ga-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCG 4261 CUGGGA-CG- CGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaugccca- 4381 -uaaa-uguu aa-------c uaacacc--- --------cc acc---gcac aau------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------a GAAG-AGG-U AAGUCGUAAC ACGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGacua a--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.S.gottl 5213 bp RNA RNA 22-SEP-1998 DEFINITION Mitochondrion Scaphiophryne gottlebei.; . ACCESSION AF0263 6 KEYWORDS . SOURCE Mitochondrion Scaphiophryne gottlebei. ORGANISM Mitochondrion Scaphiophryne gottlebei. REFERENCE 1 (bases 1 to 559) AUTHORS Richards,C.M. and Moore,W.S. TITLE A Molecular Phylogenetic Study of the Old World Treefrog Family Rhacophoridae JOURNAL Herpetol. J. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 559) AUTHORS Richards,C.M. and Moore,W.S. TITLE Direct Submission JOURNAL Submitted (23-SEP-1997) Biology, Wayne State University, Detroit, MI 48202, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF026356 BASE COUNT 163 a 124 c 94 g 102 t 4730 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|-~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~gccg-uaa- aaunnu-ua- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- acn(nnac)a c------uaa 2701 a-c|--C|GC C-AGG--AAU UACGAGC(-- ccaa---)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUG- UCCCAc---c caCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUUCUCC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------aa c--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- --uC---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-AA|G-CU UAC-|CAU(A --UGA)ACG- -----(uua- 3181 ac-)------ U-AGUGAGCU UAA-AGAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuauuc- 3781 ---------A UCAACA-CGU C-AGGUCAAG G|UGCA|GCU CAC------- ---------G 3841 A-A-GN-GG- GA-AGC--AA -UGGGCUACA AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ca---)---- ---------- ---------- UAG-AACAC- 4021 ---------- ------ACGA --AAGAC-UA C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-AC-A--GU -C-AUGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGAAA(- auaga-ga-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCA 4261 CUGGGA-CG- CGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaacgccca- 4381 -caaa-cguu aa-------c uaacaau--- --------uu acc---gcac aau------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------a GAAG-AGG-U AAGUCGUAAC ACGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- GCUUGGacua a--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.forna 5213 bp RNA RNA 09-DEC-1996 DEFINITION Mitochondrion Afrixalus fornasini.; . ACCESSION U22071 KEYWORDS . SOURCE Mitochondrion Afrixalus fornasini. ORGANISM Mitochondrion Afrixalus fornasini. REFERENCE 1 (bases 1 to 744) AUTHORS Richards,C.M. and Moore,W.S. TITLE A phylogeny for the African treefrog family hyperoliidae based on mitochondrial rDNA JOURNAL Mol. Phylogenet. Evol. 5 (3), 522-532 (1996) STANDARD No information REFERENCE 2 (bases 1 to 744) AUTHORS Richards,C.M. TITLE Direct Submission JOURNAL Submitted (28-FEB-1995) Biological Sciences, Wayne State University, Detroit, MI 48202, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U22071 BASE COUNT 176 a 103 c 91 g 119 t 4724 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~GCUU-AGC- CGUAAA-aaa 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -au(uuac)a -----ccaaa 2701 a-c|--C|GC C-AGAGNAAC UACGAGC(-- -GCAA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|ACGGUG- UCCCA---UC UACCUAGA|G GAGCCUGU-U |CUAUA--AC CG(AUGAUCC 2821 A--------- ----)CGAUU A-ACCUCACC AUUUUUAGCU ---------- ---------- 2881 (--------u uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CU|-UC--C |G------UC GC-AA|G-CU CAC-|CAU(G --UGA)AUG- -----(caa- 3181 ---)------ U-AGUGAGUU AAA-UGAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuaac- 3781 ---------A UCAAAA-CGU C-AGGUCAAA G|UGCA|GCC AAU------- ---------A 3841 A-A-AU-GG- AA-AGA--AA -UGGGCUACA AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a cu---)---- ---------- ---------- UAG-AACAU- 4021 ---------- ------ACGA --AAUac-cg u-c(------ ---------- ---------- 4081 ---------- ---------- UGAAA---c) u-cc-g--gu ca--AGAAG- -GUGGAUUUA 4141 G-A--AGUAA A-AUGAAA(- acaga-aa-- --)ACUCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAC--AGCC 4261 CUGGGA-CG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gacguaaua- 4381 auuuu-ua-- au-------- -aaaua---- --------au uaancc-uua aaauaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GU- GCUUGGnAAA ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.H.boett 5213 bp RNA RNA 02-AUG-1995 DEFINITION Mitochondrion Heterixalus boettgeri.; . ACCESSION U24672 KEYWORDS . SOURCE Mitochondrion Heterixalus boettgeri. ORGANISM Mitochondrion Heterixalus boettgeri. REFERENCE 1 (bases 1 to 734) AUTHORS Richards,C.M. and Moore,W.S. TITLE Using mt rDNA to derive a phylogeny for the African treefrog family, Hyperoliidae JOURNAL Unpublished (1995) STANDARD No information REFERENCE 2 (bases 1 to 734) AUTHORS Richards,C.M. and Moore,W.S. TITLE Direct Submission JOURNAL Submitted (12-APR-1995) Christina M. Richards, Biological Science, Wayne State University, Detroit, MI 48202, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U24672 BASE COUNT 174 a 108 c 94 g 122 t 4715 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- ---~--~~~- --~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~--- -----(~~~~ -~-------- ---------- ---------- ------)--- 1381 ----~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- ~~~~-~~~-- 1981 ~~~~~-~~~~ ~--------~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~~~~~ ---~~~~~(~ 2341 ~~~~~)~~~~ --------~~ ~~~~~~~~-~ ~~~------- ----~~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~~~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCUU-uGC- CGUAUA-aua 2521 u--uu----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ua(uuac)g ----ccuaua 2701 a-a|--C|GC C-UGAGCAAU UACGAGC(-- -GCAA--)GC UUA--AAACU CUAAGGAC-U 2761 UG|ACGGUG- UCCCA---UC UACCUAGA|G GAGCCUGU-U |CUAUA--AU UG(AUAAUCC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUUUAGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CU|-UC--C |G------UC GC-AA|G-CU UAC-|CGU(A --UGA)ACG- -----(aau- 3181 ---)------ A-AGUAAGCC UAA-UGGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---caauuc- 3781 ---------G CCCAAA-CGU C-AGGUCAAA G|UGCA|GCC AAU------- ---------A 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA GU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aua-u)---- ---------- ---------- AAG-AACAA- 4021 ---------- ------ACGA --AAaac-ca c-c(------ ---------- ---------- 4081 ---------- ---------- UGAAA---c) a-uu-g-gau ca--UGAAG- -GAGGAUUUA 4141 G-A--AGUAA A-AUGAAA(- auaga-gu-- --)GUUCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCA--AGCC 4261 CUGGGA-CG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gaaacaauu- 4381 aacaa-ua-- -au------- -aacua---- -------auu uauac-auua acaaa----- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC ACGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGACAU ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.H.trico 5213 bp RNA RNA 09-DEC-1996 DEFINITION Mitochondrion Heterixalus tricolor.; . ACCESSION U22067 KEYWORDS . SOURCE Mitochondrion Heterixalus tricolor. ORGANISM Mitochondrion Heterixalus tricolor. REFERENCE 1 (bases 1 to 730) AUTHORS Richards,C.M. and Moore,W.S. TITLE based on mitochondrial rDNA A phylogeny for the African treefrog family hyperoliidae JOURNAL Mol. Phylogenet. Evol. 5 (3), 522-532 (1996) STANDARD No information REFERENCE 2 (bases 1 to 730) AUTHORS Richards,C.M. TITLE Direct Submission JOURNAL Submitted (28-FEB-1995) Biological Sciences, Wayne State University, Detroit, MI 48202, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U22067 BASE COUNT 175 a 103 c 91 g 128 t 4716 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~GCUU-AGC- CGUAAA-aua 2521 u--uc----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -uu(uuac)u ----ccuauu 2701 a-a|--C|GC C-AGAGNAAU UACGAGC(-- -GCAA--)GC UUA--AAACU CUAAGGAC-U 2761 UG|ACGGUG- UCCCA---UC UACCUAGA|G GAGCCUGU-U |CUAUA--AU UG(AUAAUCC 2821 C--------- ----)CGAUA A-ACCUCACC AUUUUUAGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CU|-UC--C |G------UC GU-AA|G-CU UAC-|CGU(A --UGA)ACG- -----(aau- 3181 ---)------ A-AGUAAGCU AAA-UGAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cauuuc- 3781 ---------A CCUAAA-CGU C-AGGUCAAA G|UGCA|GCC AAU------- ---------A 3841 A-A-AU-GG- GA-AGA--AA -UGGGCUACA GU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aca-u)---- ---------- ---------- AAG-AACAA- 4021 ---------- ------ACGA --AAaac-ca c-c(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-ac) u-gg-a--uc -a--UGAAG- -GCGGAUUUA 4141 G-A--AGUAA A-GUGAAA(- auaga-gu-- --)GUUCACU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUA--AGCC 4261 CUGGGA-CG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gaaauaauu- 4381 aacaa-ca-- au-------- -aaaua---- --------au uuuuuuauua acaaa----- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC ACGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGACAU ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.H.argus 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Hyperolius argus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Hyperolius argus. ORGANISM Mitochondrion Hyperolius argus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U21908 LOCUS U21908 748 bp RNA VRT 09-AUG-1995 DEFINITION Hyperolius argus mitochondrion 12S ribosomal RNA and 16S ribosomal RNA genes, partial sequence, and Val-tRNA gene, mitochondrial genes encoding mitochondrial RNA, complete seqeunce. ACCESSION U21908 KEYWORDS . SOURCE Hyperolius argus. ORGANISM Mitochondrion Hyperolius argus Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Osteichthyes; Sarcopterygii; Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Hyperoliidae; Hyperolius. REFERENCE 1 (bases 1 to 748) AUTHORS Richards,C.M. and Moore,W.S. TITLE Using mt rDNA to derive a phylogeny for the African treefrog family, Hyperoliidae JOURNAL Unpublished REFERENCE 2 (bases 1 to 748) AUTHORS Richards,C.M. TITLE Direct Submission JOURNAL Submitted (28-FEB-1995) Christina M. Richards, Biological Sciences, Wayne State University, Detroit, MI 48202, USA COMMENT NCBI gi: 939657 FEATURES Location/Qualifiers source 1..748 /organism="Hyperolius argus" /mitochondrion rRNA <1..500 /product="12S ribosomal RNA" tRNA 501..572 /note="aa: Val; aa: Val" /product="Val-tRNA" rRNA 573..>748 /product="16S ribosomal RNA" BASE COUNT 264 a 137 c 126 g 207 t 14 others ORIGIN BASE COUNT 183 a 96 c 85 g 134 t 4715 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- ---~--~~~- --~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~--- -----(~~~~ -~-------- ---------- ---------- ------)--- 1381 ----~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- ~~~~-~~~-- 1981 ~~~~~-~~~~ ~--------~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~~~~~ ---~~~~~(~ 2341 ~~~~~)~~~~ --------~~ ~~~~~~~~-~ ~~~------- ----~~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~~~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| cGCUU-AGC- CGUAAA-aua 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(uuac)a -----uuaaa 2701 a-a|--C|GC C-AAAGcAAC UACGAGC(-- -GCAA--)GC UUA--AAACU UAAAGGAC-U 2761 UG|ACGGUG- UCCCA---UC UACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 U--------- ----)CGUUA U-AuCUCACC UUUUUUAGCU ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUG-UA|UA- 3121 |CU|-NC--C |G------UC GU-AA|G-CU UAC-|CAU(A --UGA)AUG- -----(uau- 3181 ---)------ U-AGUAAGUU AAA-UAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -aauaacaau 3781 u--------A CCAAAA-CGU C-AGGUCAAA G|UGCA|GCC AAC------- ---------A 3841 A-A-AA-GG- GA-AGA--AA -UGGGCUACA AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c uu---)---- ---------- ---------- AAG-AACAU- 4021 ---------- ------ACGA auuuaag-ua a-c(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) a-cu-a--cu -a--UGANG- -GCGGAUUUA 4141 G-A--AGUAA A-AUGAAA(- auaaa-gu-- --)GUUCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAA--UGCU 4261 CUGGGA-CG- UGUACACA-C -CGCCCGUCA U-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aauucuauu- 4381 aaaaa-u--- uu-------- -acaua---- --------aa aaauaaaccu guaaca---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------C GAGG-AGG-C AAGUCGCAAC ACGGUAAG-U AUA-CU(GGA 4621 -A)AGU-GU- ACUUGGACAU CAA------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.H.pun.1 5213 bp RNA RNA 16-DEC-1998 DEFINITION Mitochondrion Hyperolius puncticulatus.; . ACCESSION AF0953 7 KEYWORDS . SOURCE Mitochondrion Hyperolius puncticulatus. ORGANISM Mitochondrion Hyperolius puncticulatus. REFERENCE 1 (bases 1 to 556) AUTHORS Emerson,S.E., Richards,C.M., Drewes,R.C. and Kjer,K.M. TITLE evidence On the relationships among ranoid frogs: a review of the JOURNAL Herpetologica (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 556) AUTHORS Emerson,S.E., Richards,C.M., Drewes,R.C. and Kjer,K.M. TITLE Direct Submission JOURNAL Submitted (21-SEP-1998) Biology, Wayne State University, Detroit, MI 48202, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF095347 BASE COUNT 176 a 109 c 83 g 130 t 4715 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|-~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~GCUU-AGC- CCUAAA-aua 2521 u--ca----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(uuac)a c-----uaaa 2701 acc|--C|GC C-AAAA-AAC UACGAGC(-- --gcaa-)GC UUG--AAACU U-AAGGAC-U 2761 UG|ACGGUG- UCCAA---UC AACCUAGA|G GAGCCUGU-U |CUAUA--AC CG(AUGAUCC 2821 C--------- ----)CGUUA U-ACCUCACC UCUUUUAGCU ---------- ---------- 2881 (-------aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CU|-UC--C |G------UC GU-AA|G-CU AAC-|CAU(G --UGA)CUG- -----(uua- 3181 ---)------ C-AGUAAGCU UAAuAGUU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aauac- 3781 ---------A CCAAAA-CGU C-AGGUCAAA G|UGCA|ACC UAU------- ---------A 3841 A-A-GA-GG- AA-AGA--AA -UGGGCUACU AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a cu---)---- ---------- ---------- CAA-GAAAA- 4021 ---------- ------ACGA --auuag-ca u-c(------ ---------- ---------- 4081 ---------- ---------- ucaau----) a-ac-u--gc -u-auGAAG- -GUGGAUUUA 4141 G-A--AGUAA AgUGAAAA(- u-agc-gu-- --)GUUCACU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--UGUA 4261 CUAGGA-CA- UGUACAAA-C -CGCCCGUCA U-CCU--CUU ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< uuuccuuaau 4381 ccccu-accu auaccuaaua aauuuauuaa gaaccaa--- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- -AAG-AGG-C AAGUCGUAAC AUGGUAAG-U AUA-CU(GGA 4621 -A)AGU-GU- ACUUGGcuaa caaaa----| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.H.pun.2 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Hyperolius puncticulatus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Hyperolius puncticulatus. ORGANISM Mitochondrion Hyperolius puncticulatus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U22065 LOCUS HPU22065 740 bp DNA VRT 09-AUG-1995 DEFINITION Hyperolius puncticulatus 12S ribosomal RNA and 16S ribosomal RNA genes, partial sequence, and Val-tRNA gene, mitochondrial genes encoding mitochondrial RNA, complete sequence. ACCESSION U22065 KEYWORDS . SOURCE Hyperolius puncticulatus. ORGANISM Mitochondrion Hyperolius puncticulatus Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Osteichthyes; Sarcopterygii; Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Hyperoliidae; Hyperolius. REFERENCE 1 (bases 1 to 740) AUTHORS Richards,C.M. and Moore,W.S. TITLE Using mt rDNA to derive a phylogeny for the African treefrog family, Hyperoliidae JOURNAL Unpublished REFERENCE 2 (bases 1 to 740) AUTHORS Richards,C.M. TITLE Direct Submission JOURNAL Submitted (28-FEB-1995) Christina M. Richards, Biological Sciences, Wayne State University, Detroit, MI 48202, USA COMMENT NCBI gi: 939647 FEATURES Location/Qualifiers source 1..740 /organism="Hyperolius puncticulatus" /mitochondrion rRNA <1..493 /product="12S ribosomal RNA" tRNA 494..562 /product="Val-tRNA" rRNA 563..>740 /product="16S ribosomal RNA" BASE COUNT 265 a 148 c 118 g 194 t 15 others ORIGIN BASE COUNT 171 a 108 c 83 g 130 t 4721 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- ---~--~~~- --~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~--- -----(~~~~ -~-------- ---------- ---------- ------)--- 1381 ----~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- ~~~~-~~~-- 1981 ~~~~~-~~~~ ~--------~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~~~~~ ---~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~~~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| -GCUU-AGC- CCUAAA-aua 2521 u--ca----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(uuac)a ----cuaaaa 2701 c-c|--C|GC C-AAAA-AAC UACGAGC(-- -GCAA--)GC UUG--AAACU U-AAGGAC-U 2761 UG|ACGGUG- UCCAA---UC AACCUAGA|G GAGCCUGU-U |CUAUA--AC CG(AUGAUCC 2821 C--------- ----)CGUUA U-ACCUCACC UCUUUUAGCU ---------- ---------- 2881 (-------aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CU|-UC--C |G------UC GU-AA|G-CU AAC-|CAU(G --UGA)CUG- -----(uua- 3181 ---)------ C-AGUAAGCU UAA-UAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---uaauac- 3781 ---------A CCAAAA-CGU C-AGGUCAAA G|UGCA|ACC UAU------- ---------A 3841 A-A-GA-GG- AA-AGA--AA -UGGGCUACU AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ac uc---)---- ---------- ---------- AAG-AA-aa- 4021 ---------- ------ACGA --AUuag-ca u-c(------ ---------- ---------- 4081 ---------- ---------- ucaaua---) a-cu-g--cu -a--UGAAG- -GUGGAUUUA 4141 G-A--AGUAA A-GUGAAA(- auagc-gu-- --)GUUCACU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--UGUA 4261 CUAGGA-CA- UGUACAAA-C -CGCCCGUCA U-CCU--CUU U--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< uuccuuaauc 4381 cccua-ccua ua-------- -ccuaa---- --------ua aauuuauuaa gaacc----- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A AAAG-AGG-C AAGUCGUAAC AUGGUAAG-U NUA-CU(GGA 4621 -A)AGU-GU- ACUUGGCUAA ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.H.virid 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Hyperolius viridiflavus mariae. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Hyperolius viridiflavus mariae. ORGANISM Mitochondrion Hyperolius viridiflavus mariae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U22064 LOCUS HVU22064 734 bp DNA VRT 09-AUG-1995 DEFINITION Hyperolius viridiflavus mariae 12S ribosomal RNA and 16S ribosomal RNA genes, partial sequence, and Val-tRNA gene, mitochondrial genes encoding mitochondrial RNA, complete sequence. ACCESSION U22064 KEYWORDS . SOURCE Hyperolius viridiflavus mariae. ORGANISM Mitochondrion Hyperolius viridiflavus mariae Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Osteichthyes; Sarcopterygii; Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Hyperoliidae; Hyperolius. REFERENCE 1 (bases 1 to 734) AUTHORS Richards,C.M. and Moore,W.S. TITLE Using mt rDNA to derive a phylogeny for the African treefrog family, Hyperoliidae JOURNAL Unpublished REFERENCE 2 (bases 1 to 734) AUTHORS Richards,C.M. TITLE Direct Submission JOURNAL Submitted (28-FEB-1995) Christina M. Richards, Biological Sciences, Wayne State University, Detroit, MI 48202, USA COMMENT NCBI gi: 939649 FEATURES Location/Qualifiers source 1..734 /organism="Hyperolius viridiflavus mariae" /mitochondrion rRNA <1..490 /product="12S ribosomal RNA" tRNA 491..560 /product="Val-tRNA" rRNA 561..>734 /product="16S ribosomal RNA" BASE COUNT 276 a 138 c 118 g 187 t 15 others ORIGIN BASE COUNT 177 a 101 c 84 g 127 t 4724 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- ---~--~~~- --~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~--- -----(~~~~ -~-------- ---------- ---------- ------)--- 1381 ----~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- ~~~~-~~~-- 1981 ~~~~~-~~~~ ~--------~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~~~~~ ---~~~~~(~ 2341 ~~~~~)~~~~ --------~~ ~~~~~~~~-~ ~~~------- ----~~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~~~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCUU-AGC- CGUAAA-cua 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(uuac)a ----cuaaaa 2701 c-c|--C|GC C-AAAGNAAC UACAAGC(-- -GCAA--)GC UUA--AAACU UAAAGGAC-U 2761 UG|ACGGUG- CCCCA---UC UACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 u--------- ----)CGCUA U-ACCUCACC UUUUUUAGCU ---------- ---------- 2881 (-------aa c--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUG-UA|UA- 3121 |CU|-UC--C |G------UC GU-AA|G-CU UAC-|CAU(A --UGA)AUG- -----(cau- 3181 ---)------ C-AGUAAGUU AAA-UAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -aa-auacau 3781 u--------A CCAAAA-CGU C-AGGUCAAA G|UGCA|GCC UAC------- ---------A 3841 A-A-AA-GG- GA-AGA--AA -UGGGCUACA AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ua---)---- ---------- ---------- AAG-AACAC- 4021 ---------- ------ACGA auuuaag-ua a-u(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) a-cu-a--cu -a--uGAAG- -GCGGAUUUA 4141 G-A--AGUAA A-ACGAAA(- acaaa-gu-- --)GUUCGUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAA--UGCU 4261 CUGGGA-CG- CGUACACA-C -CGCCCGUCA U-CCU--CUC C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaa-cuuuu- 4381 aaaaa-u--- ua-------- -augau---- --------aa ------uuua uuuaaca--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------a GUAG-AGG-C AAGUCGUAAC AcGGUAAG-U AUA-CU(GGA 4621 -A)AGU-GU- ACUUGGACAU ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.K.macul 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Kassina maculata. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Kassina maculata. ORGANISM Mitochondrion Kassina maculata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U22072 LOCUS KMU22072 738 bp DNA VRT 09-AUG-1995 DEFINITION Kassina maculata 12S ribosomal RNA and 16S ribosomal RNA genes, partial sequence, and Val-tRNA gene, mitochondrial genes encoding mitochondrial RNA, complete sequence. ACCESSION U22072 KEYWORDS . SOURCE African rhacophorid frog. ORGANISM Mitochondrion Kassina maculata Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Osteichthyes; Sarcopterygii; Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Hyperoliidae; Kassina. REFERENCE 1 (bases 1 to 738) AUTHORS Richards,C.M. and Moore,W.S. TITLE Using mt rDNA to derive a phylogeny for the African treefrog family, Hyperoliidae JOURNAL Unpublished REFERENCE 2 (bases 1 to 738) AUTHORS Richards,C.M. TITLE Direct Submission JOURNAL Submitted (28-FEB-1995) Christina M. Richards, Biological Sciences, Wayne State University, Detroit, MI 48202, USA COMMENT NCBI gi: 939650 FEATURES Location/Qualifiers source 1..738 /organism="Kassina maculata" /mitochondrion rRNA <1..491 /product="12S ribosomal RNA" tRNA 492..561 /product="Val-tRNA" rRNA 562..>738 /product="16S ribosomal RNA" BASE COUNT 256 a 155 c 131 g 186 t 10 others ORIGIN BASE COUNT 163 a 112 c 92 g 122 t 4724 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- ---~--~~~- --~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~--- -----(~~~~ -~-------- ---------- ---------- ------)--- 1381 ----~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- ~~~~-~~~-- 1981 ~~~~~-~~~~ ~--------~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~~~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| -GCUU-AGC- CAUAAA-aua 2521 u--au----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -au(uuac)a -----ccuaa 2701 a-a|--C|GC C-AGAGNAAU UACGAGC(-- -ACAA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|ACGGUG- UCCCA---UC UGCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUACUCC 2821 C--------- ----)CGAUU U-ACCUCACC ACUUUUAGCC ---------- ---------- 2881 (-------aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CU|-UC--C |G------UC GU-AA|G-CU UAC-|CAU(A --UGA)AUG- -----(c--- 3181 ---)------ U-AGUGAGCA AAA-UGAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---uaauau- 3781 ---------A CCCACA-CGU C-AGGUCAAA G|UGCA|GCC GAC------- ---------A 3841 A-A-GU-GG- CA-AGA--AA -UGGGCUACA AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ac uu---)---- ---------- ---------- UAG-AACAU- 4021 ---------- ------ACGA --AAaac-ca c-a(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) a-cu-g--gu ca--CGAAG- -GCGGAUUUA 4141 G-C--AGUAA G-GGGAAA(- auaga-gu-- --)GUNCCCC U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--UGCC 4261 CUGGGA-CG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< u--aauuau- 4381 -cuuu-acau gu-------- -uaauua--- --------ac acaac-uuau uuuaua---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGACAC ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.K.seneg 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Kassina senegalensis. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Kassina senegalensis. ORGANISM Mitochondrion Kassina senegalensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U22073 LOCUS KSU22073 749 bp DNA VRT 09-AUG-1995 DEFINITION Kassina senegalensis 12S ribosomal RNA and 16S ribosomal RNA genes, partial sequence, and Val-tRNA gene, mitochondrial genes encoding mitochondrial RNA, complete sequence. ACCESSION U22073 KEYWORDS . SOURCE Senegal running frog. ORGANISM Mitochondrion Kassina senegalensis Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Osteichthyes; Sarcopterygii; Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Hyperoliidae; Kassina. REFERENCE 1 (bases 1 to 749) AUTHORS Richards,C.M. and Moore,W.S. TITLE Using mt rDNA to derive a phylogeny for the African treefrog family, Hyperoliidae JOURNAL Unpublished REFERENCE 2 (bases 1 to 749) AUTHORS Richards,C.M. TITLE Direct Submission JOURNAL Submitted (28-FEB-1995) Christina M. Richards, Biological Sciences, Wayne State University, Detroit, MI 48202, USA COMMENT NCBI gi: 939651 FEATURES Location/Qualifiers source 1..749 /organism="Hyperolius argus" /mitochondrion rRNA <1..497 /product="12S ribosomal RNA" tRNA 498..566 /product="Val-tRNA" rRNA 567..>749 /product="16S ribosomal RNA" BASE COUNT 264 a 137 c 127 g 207 t 14 others ORIGIN BASE COUNT 181 a 95 c 85 g 134 t 4718 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~C| -GCUU-AGC- CGUAAA-aua 2521 u--u------ |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -au(uuac)a u------uaa 2701 aaa|--C|GC C-AAAGCAAC UACGAGC(-- -GCAA--)GC UUA--AAACU UAAAGGAC-U 2761 UG|ACGGUG- UCCCA---UC UACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 U--------- ----)CGUUA U-AUCUCACC UUUUUUAGCU ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUG-UA|UA- 3121 |CU|-NC--C |G------UC GU-AA|G-CU UAC-|CAU(A --UGA)AUG- -----(--u- 3181 au-)------ U-AGUAAGUU AAA-UAGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-a auaacaauu- 3781 ---------A CCAAAA-CGU C-AGGUCAAA G|UGCA|GCC AAC------- ---------A 3841 A-A-AA-GG- GA-AGA--AA -UGGGCUACA AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-cu u----)---- ---------- ---------- AAG-AACAU- 4021 ---------- ------ACGA auuuaag-ua a-c(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) a-cu-a--cu -a--uGANG- -GCGGAUUUA 4141 G-A--AGUAA A-AUGAAA(- auaaa-gu-- --)GUUCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAA--UGCU 4261 CUGGGA-CG- UGUACACA-C -CGCCCGUCA U-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aauucuauu- 4381 aaaaa-u--- uu-------- -acauaa--- --------aa aauaaaccug uaaca----- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------C GAGG-AGG-C AAGUCGCAAC ACGGUAAG-U AUA-CU(GGA 4621 -A)AGU-GU- ACUUGGACAU ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.L.argen 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Leptopelis argenteus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Leptopelis argenteus. ORGANISM Mitochondrion Leptopelis argenteus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U22075 LOCUS LAU22075 744 bp DNA VRT 09-AUG-1995 DEFINITION Leptopelis argenteus 12S ribosomal RNA and 16S ribosomal RNA genes, partial sequence, and Val-tRNA gene, mitochondrial genes encoding mitochondrial RNA, complete sequence. ACCESSION U22075 KEYWORDS . SOURCE Leptopelis argenteus. ORGANISM Mitochondrion Leptopelis argenteus Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Osteichthyes; Sarcopterygii; Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Hyperoliidae; Leptopelis. REFERENCE 1 (bases 1 to 744) AUTHORS Richards,C.M. and Moore,W.S. TITLE Using mt rDNA to derive a phylogeny for the African treefrog family, Hyperoliidae JOURNAL Unpublished REFERENCE 2 (bases 1 to 744) AUTHORS Richards,C.M. TITLE Direct Submission JOURNAL Submitted (28-FEB-1995) Christina M. Richards, Biological Sciences, Wayne State University, Detroit, MI 48202, USA COMMENT NCBI gi: 939652 FEATURES Location/Qualifiers source 1..744 /organism="Leptopelis argenteus" /mitochondrion rRNA <1..497 /product="12S ribosomal RNA" tRNA 498..566 /product="Val-tRNA" rRNA 567..>744 /product="16S ribosomal RNA" BASE COUNT 252 a 179 c 127 g 171 t 15 others ORIGIN BASE COUNT 165 a 127 c 94 g 111 t 4716 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- ---~--~~~- --~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~--- -----(~~~~ -~-------- ---------- ---------- ------)--- 1381 ----~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- ~~~~-~~~-- 1981 ~~~~~-~~~~ ~--------~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~~~~~ ---~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~~~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| -CCUC-AGC- CGUAAA-aca 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ac(cuac)a ----ccauaa 2701 g-c|--C|GC C-CGAG-AAC UACGAGC(-- -ACUC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|ACGGUG- UCCCA---CC CAACUAGA|G GAGCCUGU-U |CUAUA--AU CG(ACAAUCC 2821 C--------- ----)CGCUA U-ACCUCACC ACUCCUAGCU ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUG-UA|UA- 3121 |CC|-UC--C |G------UC GA-AA|G-CU UAC-|CCU(G --UGA)ACG- -----(auc- 3181 au-)------ U-AGUAAGCC ACA-UGGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuaucc- 3781 ---------A CCAAAA-CGU C-AGGUCAAG G|UGCA|ACU UAC------- ---------G 3841 A-A-GU-GG- CA-AGu--AA -UGGGCUACA AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ac---)---- ---------- ---------- UAG-AAUAA- 4021 ---------- ------ACGA --AAaga-uc u-g(------ ---------- ---------- 4081 ---------- --------ca UGAAA----) c-ac-a--gu ca--UGAGG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGAAA(- auaga-ga-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCA 4261 CUGGGA-CG- UGUACACA-C -CGCCCGUCA U-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gacuaacac- 4381 --acu-aaua gu-------- -uuaua---- --------ac accccccaua uaaag----- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG-U AUA-CU(GGA 4621 -A)AGU-GU- ACUUGGAUUA A--------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.L.con.2 5213 bp RNA RNA 16-DEC-1998 DEFINITION Mitochondrion Leptopelis concolor.; . ACCESSION AF0953 6 KEYWORDS . SOURCE Mitochondrion Leptopelis concolor. ORGANISM Mitochondrion Leptopelis concolor. REFERENCE 1 (bases 1 to 554) AUTHORS Emerson,S.E., Richards,C.M., Drewes,R.C. and Kjer,K.M. TITLE evidence On the relationships among ranoid frogs: a review of the JOURNAL Herpetologica (1999) In press STANDARD No information REFERENCE 2 (bases 1 to 554) AUTHORS Emerson,S.E., Richards,C.M., Drewes,R.C. and Kjer,K.M. TITLE Direct Submission JOURNAL Submitted (21-SEP-1998) Biology, Wayne State University, Detroit, MI 48202, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF095346 BASE COUNT 174 a 114 c 97 g 110 t 4718 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|-~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~~~CC-AGC- CGUAAA-aca 2521 uu-aa----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(uuac)a c-----caua 2701 a-a|--C|GC C-UGAG-AAC UACGAGC(-- --acac-)GC UUA--AAACU CAAAGGAC-U 2761 UG|ACGGUG- UCCCA---UC CAACUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUG-UA|UA- 3121 |CC|-UC--C |G------UC GA-AA|G-CU UAC-|CCU(G --UGA)AUG- -----(auc- 3181 au-)------ U-AGUAAGCA AUA-GGGu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuaccc- 3781 ---------A CCAAAA-CGU C-AGGUCAAG G|UGCA|GCU UAC------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ac---)---- ---------- ---------- UAG-AACAA- 4021 ---------- ------ACGA --AAAGA-UC U-G(------ ---------- ---------- 4081 ---------- --------ca UGAAA----) C-AC-A--GU -Cau-GAAG- -GCGGAUUUA 4141 G-U--AGUAA A-AAGAAA(- auaga-gu-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCG--AGCA 4261 CUGGGA-CG- UGUACACA-C -CGCCCGUCA U-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gauaacaaua 4381 caaca-uguc uauaacacgc uaacgaacau aag------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAAG-AGG-C AAGUCGUAAC AUGGUAAG-U AUA-CU(GGA 4621 -A)AGU-GU- ACUUGGAAua a--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.L.vermi 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Leptopelis vermiculatus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Leptopelis vermiculatus. ORGANISM Mitochondrion Leptopelis vermiculatus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U22074 LOCUS LVU22074 746 bp DNA VRT 09-AUG-1995 DEFINITION Leptopelis vermiculatus 12S ribosomal RNA and 16S ribosomal RNA genes, partial sequence, and Val-tRNA gene, mitochondrial genes encoding mitochondrial RNA, complete sequence. ACCESSION U22074 KEYWORDS . SOURCE Leptopelis vermiculatus. ORGANISM Mitochondrion Leptopelis vermiculatus Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Osteichthyes; Sarcopterygii; Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Hyperoliidae; Leptopelis. REFERENCE 1 (bases 1 to 746) AUTHORS Richards,C.M. and Moore,W.S. TITLE Using mt rDNA to derive a phylogeny for the African treefrog family, Hyperoliidae JOURNAL Unpublished REFERENCE 2 (bases 1 to 746) AUTHORS Richards,C.M. TITLE Direct Submission JOURNAL Submitted (28-FEB-1995) Christina M. Richards, Biological Sciences, Wayne State University, Detroit, MI 48202, USA COMMENT NCBI gi: 939654 FEATURES Location/Qualifiers source 1..746 /organism="Leptopelis vermiculatus" /mitochondrion rRNA <1..497 /product="12S ribosomal RNA" tRNA 498..567 /product="Val-tRNA" rRNA 568..>746 /product="16S ribosomal RNA" BASE COUNT 253 a 166 c 140 g 174 t 13 others ORIGIN BASE COUNT 170 a 119 c 99 g 108 t 4717 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~--~~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- ---~--~~~- --~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~~- -----(~~~~ -~-------- ---------- ---------- ------)--- 1381 ----~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~~-)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~--~~~~ ~~-------~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~~~~~ ---~~~~~(~ 2341 ~~~~~)~~~~ --------~~ ~~~~-~~~-~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~~~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCCC-AGC- CGUAAA-aca 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -ac(uuac)a ----ucacaa 2701 a-u|--C|GC C-CGAG-AAC UACGAGC(-- -ACAC--)GC UUA--AAACU CAAAGGAC-U 2761 UG|ACGGUG- UCCCA---UC CAACUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUCUAGCC ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUG-UA|UA- 3121 |CC|-UC--C |G------UC GA-AA|G-CU UAC-|CCU(G --UGA)ACG- -----(acc- 3181 au-)------ C-AGUAGGCA AcA-AGGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cuaucc- 3781 ---------A CCAAAA-CGU C-AGGUCAAG G|UGCA|GCU UAC------- ---------G 3841 G-G-GU-GG- GA-AGA--AA -UGGGCUACA AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua cu---)---- ---------- ---------- UAG-AACAA- 4021 ---------- ------ACGA --AAaga-uc u-g(------ ---------- ---------- 4081 ---------- --------ca UGAAA----) c-ac-a-guc -a--UGAGG- -GCGGAUUUA 4141 G-U--AGUAA A-AAGAAA(- auaga-gu-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUG--AGCA 4261 CUGGGA-CG- UGUACACA-C -CGCCCGUCA U-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaauaaca- 4381 ccaaa-n--- gu-------- -cuaua---- --------ac acgucaacaa acaua----- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAGG-AGG-C AAGUCGUAAC AUGGUAAG-U AUA-CU(GGA 4621 -A)AGU-GU- ACUUGGAUUA A--------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.verru 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Phylctimantis verrucosus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Phylctimantis verrucosus. ORGANISM Mitochondrion Phylctimantis verrucosus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U22081 LOCUS PVU22081 386 bp DNA VRT 09-AUG-1995 DEFINITION Phylctimantis verrucosus 12S ribosomal RNA gene, mitochondrial gene encoding mitochondrial RNA, partial sequence. ACCESSION U22081 KEYWORDS . SOURCE Phylctimantis verrucosus. ORGANISM Mitochondrion Phylctimantis verrucosus Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Osteichthyes; Sarcopterygii; Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Hyperoliidae; Phylctimantis. REFERENCE 1 (bases 1 to 386) AUTHORS Richards,C.M. and Moore,W.S. TITLE Using mt rDNA to derive a phylogeny for the African treefrog family, Hyperoliidae JOURNAL Unpublished REFERENCE 2 (bases 1 to 386) AUTHORS Richards,C.M. TITLE Direct Submission JOURNAL Submitted (28-FEB-1995) Christina M. Richards, Biological Sciences, Wayne State University, Detroit, MI 48202, USA COMMENT NCBI gi: 939655 FEATURES Location/Qualifiers source 1..386 /organism="Phylctimantis verrucosus" /mitochondrion rRNA <1..>386 /product="12S ribosomal RNA" BASE COUNT 131 a 82 c 67 g 105 t 1 others ORIGIN BASE COUNT 131 a 82 c 67 g 105 t 4828 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~--~~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- ---~--~~~- --~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~~- -----(~~~~ -~-------- ---------- ---------- ------)--- 1381 ----~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~~-)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~--~~~~ ~~-------~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~~~~~ ---~~~~~(~ 2341 ~~~~~)~~~~ --------~~ ~~~~-~~~-~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~~~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~uuu-AAC- uGUAAA-auc 2521 u--uu----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -cu(uuac)a -----uauaa 2701 a-a|--C|GC C-AGAGCAAU UACGAGC(-- -ACAA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|ACGGUG- UCCCA---UC UACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUACUCC 2821 C--------- ----)CGAUU U-ACCUCACC ACUUUUAGCC ---------- ---------- 2881 (-------aa u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CU|-UC--C |G------UC GU-AA|G-CU UAC-|CAU(A --UGA)AUG- -----(u--- 3181 ---)------ U-AGUGAGCA AAA-UGAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---uuauau- 3781 ---------A UCUAUA-CGU C-AGGUCAAA G|UGCA|GCC AAC------- ---------A 3841 A-A-AU-GG- CA-AGA--AA -UGGGCUACA AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- auu-u)---- ---------- ---------- UAG-AAUAU- 4021 ---------- ------ACGA --AAaac-ca u-a(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) a-cu-g--gu ca--UGAAG- -GCGGAUUUA 4141 G-C--AGUAA G-AAGAAA(- acaga-gc-- --)GUUCUUC U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--UGUU 4261 CUGGGA-CG- UGUACAAC-C -CnCCC~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.T.seych 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Tachycnemis seychellensis. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Tachycnemis seychellensis. ORGANISM Mitochondrion Tachycnemis seychellensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U22080 LOCUS TSU22080 748 bp DNA VRT 09-AUG-1995 DEFINITION Tachycnemis seychellensis 12S ribosomal RNA and 16S ribosomal RNA genes, partial sequence, and Val-tRNA gene, mitochondrial genes encoding mitochondrial RNA, complete sequence. ACCESSION U22080 KEYWORDS . SOURCE Tachycnemis seychellensis. ORGANISM Mitochondrion Tachycnemis seychellensis Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Osteichthyes; Sarcopterygii; Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Hyperoliidae; Tachycnemis. REFERENCE 1 (bases 1 to 748) AUTHORS Richards,C.M. and Moore,W.S. TITLE Using mt rDNA to derive a phylogeny for the African treefrog family, Hyperoliidae JOURNAL Unpublished REFERENCE 2 (bases 1 to 748) AUTHORS Richards,C.M. TITLE Direct Submission JOURNAL Submitted (28-FEB-1995) Christina M. Richards, Biological Sciences, Wayne State University, Detroit, MI 48202, USA COMMENT NCBI gi: 939656 FEATURES Location/Qualifiers source 1..748 /organism="Tachycnemis seychellensis" /mitochondrion rRNA <1..499 /product="12S ribosomal RNA" tRNA 500..569 /product="Val-tRNA" rRNA 570..>748 /product="16S ribosomal RNA" BASE COUNT 261 a 150 c 131 g 192 t 14 others ORIGIN BASE COUNT 176 a 107 c 93 g 121 t 4716 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~--~~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- ---~--~~~- --~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~~- -----(~~~~ -~-------- ---------- ---------- ------)--- 1381 ----~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~~-)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~--~~~~ ~~-------~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~~~~~ ---~~~~~(~ 2341 ~~~~~)~~~~ --------~~ ~~~~-~~~-~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~~~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCCU-AGC- CGUAAA-aua 2521 u--uu----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -au(uuac)a ----ccuaua 2701 a-a|--C|GC C-AGAGNAAU UACGAGC(-- -GCAA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|ACGGUG- UCCCA---UC UACCUAGA|G GAGCCUGU-U |CUAUA--AU UG(AUAAUCC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUUUAGCC ---------- ---------- 2881 (-------ua uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CU|-UC--C |G------UC GC-AA|G-CU UAC-|CGU(A --UGA)ACG- -----(aac- 3181 ---)------ A-AGUAAGCU UAA-UGAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---caauuc- 3781 ---------A CCAAAA-CGU C-AGGUCAAA G|UGCA|GCC AAU------- ---------A 3841 A-A-GU-GG- GA-AGA--A- -UGGGCUACA GU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a gua-u)---- ---------- ---------- AAG-AACAA- 4021 ---------- ------ACGA --AAaau-ca c-c(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) a-cu-g--ga -ucaUGAGG- -GNGGAUUUA 4141 G-A--AGUAA A-AUGAAA(- aaaga-gu-- --)GUUCAUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUA--AGCC 4261 CUGGGA-CG- CGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gaaauuuuc- 4381 aacaa-ca-- au-------- -aaaua---- --------au uuauuuuuau acacaaa--- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC ACGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGACAU ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.marti 5213 bp RNA RNA 22-SEP-1998 DEFINITION Mitochondrion Arthroleptides martiensseni.; . ACCESSION AF0263 2 KEYWORDS . SOURCE Mitochondrion Arthroleptides martiensseni. ORGANISM Mitochondrion Arthroleptides martiensseni. REFERENCE 1 (bases 1 to 559) AUTHORS Richards,C.M. and Moore,W.S. TITLE A Molecular Phylogenetic Study of the Old World Treefrog Family Rhacophoridae JOURNAL Herpetol. J. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 559) AUTHORS Richards,C.M. and Moore,W.S. TITLE Direct Submission JOURNAL Submitted (23-SEP-1997) Biology, Wayne State University, Detroit, MI 48202, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF026342 BASE COUNT 144 a 113 c 91 g 134 t 4731 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|-~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~~~uc-agu- cguaaa-aua 2521 u--uu----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a uuu(acac)- u------uca 2701 c-a|--C|GC C-AGGG-UAU UACGAGC(-- uuca---)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUG- UCCCAc---c caCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(ACACCCC 2821 C--------- ----)CGCUA C-ACCUAACC UCUUUUUGCC ---------- ---------- 2881 (-------uu u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-AA|G-UC UAC-|CAU(G --UGA)ACG- -----(cnn- 3181 nn-)------ N-NGUAUACU UAA-UGGU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuuuc- 3781 ---------A CCAAUA-CGU C-AGGUCAAG G|UGCA|GCC UAU------- ---------G 3841 A-A-GA-GG- UA-AGC--AA -UGGGCUACA AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a cu---)---- ---------- ---------- UAG-AACAU- 4021 ---------- ------ACGA --AAAAC-UU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--c-) A-CA-G--UU -U-UUGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AAGAAA(- auagc-gu-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- uucc--GGCA 4261 CUGGGA-CG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gcaauuau-- 4381 --uaa-auug uu-------a ucuaaca--- --------ua uaa-ucu-uc uuu------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-u AAGUCGUAAC ACGGUAAG-U GUA-NY(GGA 4621 -A)AGU-GC- ACUUGGacaa ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.R.cates 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Rana catesbeiana. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Rana catesbeiana. ORGANISM Mitochondrion Rana catesbeiana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X12841 Same as M57527. AUTHORS Nagae,Y., Fujii,H., Yoneyama,Y., Goto,Y. and Okazaki,T. TITLE Nucleotide sequence of the Rana catesbeiana mitochondrial small (12S) and large (16S) ribosomal RNA genes JOURNAL Nucleic Acids Res. 16, 10363-10363 (1988) BASE COUNT 291 a 219 c 187 g 240 t 4276 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --CAAAGGUU 661 (UGG-)U-CC U|AGCCU-UA UUA-UCAACU -G-UUUC-UC |AA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACACCCGU GAGAA---CG C|CCU-Uuaa -auc-u---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uaccc -----)---- 1261 ---------- ---------- ---a--gau- --aAAGGAGC |--------- uGGUAUCA-- 1321 -GGCACa--- -----(aacc cu-------- ---------- ---------- ------)--- 1381 ----c|---c GCCCA--CAA C|ACCUA-GU --|------- (-cuc--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCU--( CAAG-)--GG UAau---C-A 1501 GCA|GUG-AU UAAUUUUGCG u--aUGAGC( ---------- ----GUCA)G CUUGA-CUC| 1561 A|-GUUA-G- AG-AAAaga- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGC 1921 -UAA-C---C CGGU-G(-CC AGCCGCC-GC -GGC-UA)-C ACCGUG|--- gGGC-UCG-- 1981 AGUUG-AUAG U--------c auCGGC|GUU AAGCGUGAUU -A-aag---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -uau-uacaa auuaag--gu -----|UAAA uua-au-acu ---UAGUA(G 2341 UUUUA)UGCu --------ug uuau-uaa-G AAA------- ----uccaca -aAC(-GAAA 2401 -)GU|u---- ----acccua au-uauu-au g--------- cuu-gaauAC ACGAC-AGCU 2461 A-GGA--AAA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CGUAAA-caa 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a uuu(acac)c a------aua 2701 a-g|--C|GC C-AGGG-AAU UACGAGC(-- --aau--)GC UUA--AAACC CAAAGGAU-U 2761 UG|ACGGUG- UCCCAc---c ccACUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUGAUCC 2821 C--------- ----)CGAUA U-ACCCGACC AUUUCUCGCU ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUG-UA|UA- 3121 |CC|-UC--C |G------UC GA-AA|G-CU UAC-|CAU(G --UGA)ACG- -----(cuu- 3181 g--)------ C-AGUAGGCU UAA-UGAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --cuaacac- 3781 ---------G UCAAUA-CGU C-AGGUCAAG G|UGCA|GCU UAA------- ---------G 3841 A-A-AU-GG- GA-AGU--AA -UGGGCUACA AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a uc---)---- ---------- ---------- UAG-AACAA- 4021 ---------- ------ACGA --AAGAC-UA U-a(------ ---------- ---------- 4081 ---------- ---------- UGAAA--u-) u-au-a--au -c-auGAAG- -GUGGAUUUA 4141 G-U--AGUAA A-AAGAAA(- auaga-gu-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGGGA-CG- CGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gauaguauc- 4381 --uca-cccc gu-------u ccuaaccc-- --------ac uau-uac-au uuu------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGuuua ua-------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.R.pipie 5213 bp RNA RNA 01-MAY-1998 DEFINITION Mitochondrion Rana pipiens.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. ACCESSION Y10945 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. SOURCE Mitochondrion Rana pipiens. ORGANISM Mitochondrion Rana pipiens. REFERENCE 1 (bases 1 to 2613) AUTHORS Feller,A.E. and Hedges,S.B. TITLE Molecular evidence for a Salamander-Caecilian clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2613) AUTHORS Hedges,B. TITLE Direct Submission JOURNAL Submitted (03-FEB-1997) B. Hedges, Pennsylvania State University, Dept. Biology, 208 Mueller Lab., University Park, PA 16802, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y10945 BASE COUNT 301 a 213 c 185 g 234 t 4280 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---AAAGGUU 661 (UGG-)U-CC U|GGCCU-UA CUA-UCAAUU -G-UUUC-UU |GA-UU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACACCAGU GAGGA---CG C|CCU-Ucua --au-uc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uaucc c----)---- 1261 ---------- ---------- ---a--gau- --aAAGGAGC |--------- uGAUAUCA-- 1321 -GGCACa--- -----(aac- -u-------- ---------- ---------- ------)--- 1381 ----c|---c GCCCA--CAA C|AUCUA-GU --|------- (-ccc--)-- -------AC| 1441 CACA------ ---------- ---------- -|-CCCC--( -aa--)--GG UAau---C-A 1501 GCA|GUG-AU UAAUCUUGAA c--aUAAGC( ---------- ----GUAA)G CUUGA-UUC| 1561 A|-GUCA-A- AG-AAAaga- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGC 1921 -CAA-C--aU UGGU-G(-CC AGC-GCC-GC -GGC-UA)-C ACCCUA|--- gGGC-CCA-- 1981 AGUUG-AUAA U--------c auCGGC|GUU AAGCGUGAUU -A-aag-|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -gau-uaaaa auuagg--au -----|uaaa uua-au-gcu ---UAGCA(G 2341 UUUUA)UGCu --------ug cuau-uaa-g aaa------- ----cacaca -aAC(-GAAA 2401 -)GU|u---- ----auccua uu-uau---a aa-------- cuu-gaauAC ACGAC-AGCU 2461 A-GGAA--GA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CGUAAA-caa 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------a uuu(acac)c c------auc 2701 a-g|--C|GC C-AGGG-AAC UACGAGC(-- --aau--)GC UUA--AAACC CAAAGGAU-U 2761 UG|ACGGUG- UCCCAc---c caGCUAGA|G GAGCCUGU-U |CUUUA--AU CG(AUGAUCC 2821 C--------- ----)CGCUA C-ACCUGACC AUUUCUUGCU ---------- ---------- 2881 (-------ca u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUG-UA|UA- 3121 |CC|-UC--C |G------UC GA-AA|G-CU UAC-|CAU(G --UGA)ACG- -----(ucu- 3181 u--)------ C-AGUAGGCU CAA-UGAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- (caua--)-- ----auuac- 3781 ---------A UCAAUA-CGU C-AGGUCAAG G|UGCA|GCU UAA------- ---------G 3841 A-A-AU-GG- GA-AGC--AA -UUGGCUACA AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ua---)---- ---------- ---------- UAG-AACAA- 4021 ---------- -------CGA --AAGGC-UA U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA--u-) C-AU-A--GC -A-GCGAAG- -GUGGAUUUA 4141 G-U--AGUAA A-AAGAAA(- auaga-gu-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CCC--GGCU 4261 CUGGGA-UG- CGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gauaguaaa- 4381 u---a-a-ua uuaucc---- --cua----- ----acccau uaucacguuu u--------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGAAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAAAA UA-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.labro 5213 bp RNA RNA 22-SEP-1998 DEFINITION Mitochondrion Tomopterna labrosa.; . ACCESSION AF0263 4 KEYWORDS . SOURCE Mitochondrion Tomopterna labrosa. ORGANISM Mitochondrion Tomopterna labrosa. REFERENCE 1 (bases 1 to 567) AUTHORS Richards,C.M. and Moore,W.S. TITLE A Molecular Phylogenetic Study of the Old World Treefrog Family Rhacophoridae JOURNAL Herpetol. J. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 567) AUTHORS Richards,C.M. and Moore,W.S. TITLE Direct Submission JOURNAL Submitted (23-SEP-1997) Biology, Wayne State University, Detroit, MI 48202, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF026354 BASE COUNT 161 a 116 c 99 g 122 t 4715 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|-~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~gccc-agc- cguaaa-aaa 2521 u--uua---- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- cuc(acac)c a------aua 2701 a-a|--C|GC C-AGGG-UAA UACGAGC(-- gcaa---)GC UUA--AAAUC CAAAGGAC-U 2761 UG|ACGGUG- UCCCAc---c caCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 U--------- ----)CGUUA U-ACCCAACC ACUUCUUGCU ---------- ---------- 2881 (-------uu u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GC-AA|G-CC UAC-|CGU(A --UGA)AUG- -----(ccc- 3181 aa-)------ C-AGUAGGUU UAA-UGAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuacc- 3781 ---------A UCAACA-CGU C-AGGUCAAG G|UGCA|GCC UAU------- ---------G 3841 G-A-GU-GG- AA-AGC--AA -UGGGCUACA AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a cu---)---- ---------- ---------- UAG-AACAA- 4021 ---------- ------ACGG --AAUUC-UA C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-AU-A--GU -C-AUGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-AGGAAA(- auaga-au-- --)GUUCCUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAA--GGCU 4261 CUGGGA-CG- UGUACAAA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aauaguacag 4381 caacu-uaag uu------uc auaaccuau- --------au uga---acgu cuu------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGauua a--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.eryth 5213 bp RNA RNA 22-SEP-1998 DEFINITION Mitochondrion Boophis erythrodactylus.; . ACCESSION AF0263 3 KEYWORDS . SOURCE Mitochondrion Boophis erythrodactylus. ORGANISM Mitochondrion Boophis erythrodactylus. REFERENCE 1 (bases 1 to 523) AUTHORS Richards,C.M. and Moore,W.S. TITLE Family Rhacophoridae A Molecular Phylogenetic Study of the Old World Treefrog JOURNAL Herpetol. J. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 523) AUTHORS Richards,C.M. and Moore,W.S. TITLE Direct Submission JOURNAL Submitted (23-SEP-1997) Biology, Wayne State University, Detroit, MI 48202, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF026343 BASE COUNT 134 a 110 c 94 g 116 t 4759 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|-~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ 2701 ~~~|~~~|~~ ~~~~~~~UAU UACGAGC(-- -acaa--)GC UUA--AAAUC CAAAGGAC-U 2761 UG|ACGGNG- UCUCAc---c ccCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUACUCC 2821 C--------- ----)CGCUU U-ACCUCACC ACCCCUUGCU ---------- ---------- 2881 (-------ca u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- --gC---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GC-AA|G-CU UGC-|CAU(A --UGA)AUG- -----(acu- 3181 cu-)------ U-AGCAGGCU CAA-UGAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --uuugucc- 3781 ---------G UCACUA-CGU C-AGGUCAAG G|UGCA|GCC CAU------- ---------G 3841 A-G-GU-GG- GA-AGC--AA -UGGGCUACA AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a cu---)---- ---------- ---------- UAG-AACAU- 4021 ---------- ------ACGA --AUAUC-UA U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--a-) C-AU-A--GA -C-AUGAAG- -GUGGAUUUA 4141 G-U--AGUAA A-AGAAAA(- aaauu-gu-- --)GUUUCUU U-UAAu---- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -agc--GGCC 4261 CUGAGA-UG- CGUACAAA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gauagcgu-- 4381 --ccc-uuca gu-------c gauaaca--- --------ac u-uuaugcac uuu------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-U AAGUCGYAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGaaac a--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.tephr 5213 bp RNA RNA 22-SEP-1998 DEFINITION Mitochondrion Boophis tephraeomystax.; . ACCESSION AF0263 4 KEYWORDS . SOURCE Mitochondrion Boophis tephraeomystax. ORGANISM Mitochondrion Boophis tephraeomystax. REFERENCE 1 (bases 1 to 543) AUTHORS Richards,C.M. and Moore,W.S. TITLE A Molecular Phylogenetic Study of the Old World Treefrog Family Rhacophoridae JOURNAL Herpetol. J. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 543) AUTHORS Richards,C.M. and Moore,W.S. TITLE Direct Submission JOURNAL Submitted (23-SEP-1997) Biology, Wayne State University, Detroit, MI 48202, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF026344 BASE COUNT 147 a 120 c 89 g 118 t 4739 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|-~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(acac)c c------aca 2701 c-a|--C|GC C-AGGA-UAU UACGAGC(-- ucaa---)GC UUA--AAAUC CAAAGGAC-U 2761 UG|ACGGUG- UUCCAc---c caUCUAGA|G GAGCCUGU-U |CUUUA--AU CG(AUACUCC 2821 C--------- ----)CGCUU U-ACCUCACC AUUUCUUGCU ---------- ---------- 2881 (-------uc u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- --uC---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GC-AA|A-CU UGC-|CCU(A --UGA)AUG- -----(aca- 3181 ca-)------ C-AGCAAGUU CAA-UGGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cccc- 3781 ---------A CCAAUA-CGU C-AGGUCAAG G|UGCA|GCC CAU------- ---------G 3841 A-A-AU-GG- GA-AGC--AA -UGGGCUACA AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a cu---)---- ---------- ---------- UAG-AACAC- 4021 ---------- ------ACGA --ACUAU-CA C-U(------ ---------- ---------- 4081 ---------- ---------- UGAAA--c-) A-GU-G--AU -C-AUGAAG- -GUGGAUUUA 4141 G-U--AGUAA A-GAGAAA(- uuaua-gc-- --)GUUCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCC 4261 CUGGAA-CG- UGUACAAA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gauagcau-a 4381 u-uaa-acau uu-------u cauaaacc-- --------ac ua-caagcac cuu------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-U AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGaaua a--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.robus 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Buergeria robusta. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Buergeria robusta. ORGANISM Mitochondrion Buergeria robusta. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U22083 LOCUS BRU22083 744 bp DNA VRT 09-AUG-1995 DEFINITION Buergeria robusta 12S ribosomal RNA and 16S ribosomal RNA genes, partial sequence, and Val-tRNA gene, mitochondrial genes encoding mitochondrial RNA, complete sequence. ACCESSION U22083 KEYWORDS . SOURCE Buergeria robusta. ORGANISM Mitochondrion Buergeria robusta Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Osteichthyes; Sarcopterygii; Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Rhacophoridae; Buergeria. REFERENCE 1 (bases 1 to 744) AUTHORS Richards,C.M. and Moore,W.S. TITLE Using mt rDNA to derive a phylogeny for the African treefrog family, Hyperoliidae JOURNAL Unpublished REFERENCE 2 (bases 1 to 744) AUTHORS Richards,C.M. TITLE Direct Submission JOURNAL Submitted (28-FEB-1995) Christina M. Richards, Biological Sciences, Wayne State University, Detroit, MI 48202, USA COMMENT NCBI gi: 939645 FEATURES Location/Qualifiers source 1..744 /organism="Buergeria robusta" /mitochondrion rRNA <1..494 /product="12S ribosomal RNA" tRNA 495..596 /product="Val-tRNA" rRNA 597..>744 /product="16S ribosomal RNA" BASE COUNT 235 a 184 c 150 g 171 t 4 others ORIGIN BASE COUNT 155 a 123 c 102 g 114 t 4719 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~--~~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- ---~--~~~- --~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~~- -----(~~~~ -~-------- ---------- ---------- ------)--- 1381 ----~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~~-)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~--~~~~ ~~-------~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~~~~~ ---~~~~~(~ 2341 ~~~~~)~~~~ --------~~ ~~~~-~~~-~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~~~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCCA-AGC- CGUAAA-auu 2521 a--ac----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(ucac)a -----uaaca 2701 a-a|--C|GC C-AGGG-GAU UACGAGC(-- -UUUA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUG- ACCCA---CC CAUCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUA U-ACCUUACC AUUUCUAGCU ---------- ---------- 2881 (-------uu uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-AA|A-CU CAC-|CGC(U --UGA)ACG- -----(cau- 3181 aa-)------ A-AGUGUGUC CAA-UGGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---cacccc- 3781 ---------A CCAGCA-CGU C-AGGUCAAG G|UGCA|GCU CAU------- ---------G 3841 A-A-AU-GG- AA-AGC--AA -UGGGCUACA AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- aua--)---- ---------- ---------- UAG-AAUAA- 4021 ---------- ------ACGA --AAuac-ug c-a(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) c-ac-a--gu ca--UGAAG- -GAGGAUUUA 4141 G-U--AGUAA A-GAGGGA(- guaga-ga-- --)GCCCCCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UCU--GGCC 4261 CUGGGA-CA- UGUACAAA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gauagccua- 4381 cucac-uu-- gc-------- uacaua---- --------ac cugauuucgc -gccuu---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGAACA A--------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.eiffi 5213 bp RNA RNA 22-SEP-1998 DEFINITION Mitochondrion Chirixalus eiffingeri.; . ACCESSION AF0263 6 KEYWORDS . SOURCE Mitochondrion Chirixalus eiffingeri. ORGANISM Mitochondrion Chirixalus eiffingeri. REFERENCE 1 (bases 1 to 563) AUTHORS Richards,C.M. and Moore,W.S. TITLE A Molecular Phylogenetic Study of the Old World Treefrog Family Rhacophoridae JOURNAL Herpetol. J. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 563) AUTHORS Richards,C.M. and Moore,W.S. TITLE Direct Submission JOURNAL Submitted (23-SEP-1997) Biology, Wayne State University, Detroit, MI 48202, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF026346 BASE COUNT 152 a 122 c 98 g 118 t 4723 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|-~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~gccc-agc- cguaua-nna 2521 u--ca----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- cuu(ucnc)u u------acc 2701 u-g|--C|GC C-UGGGCUAU UUCGUGU(-- --cna--)AC UUA--AAACC CAAAGGAc-U 2761 UG|ACGGUG- UCCUAc-ccc cuACUAGA|G GAGCCUGU-U |CUAUA--AC CG(AUAAUCC 2821 A--------- ----)CGUUA U-ACCUAACC AUCCCUUGCC ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GC-AA|G-CU UAC-|CAU(A --UGA)ACG- -----(cau- 3181 aa-)------ C-UGUAGGCU CUA-GGAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuaac- 3781 ---------G CCAUAA-CGU C-AGGUCAAG G|UGCA|GCU UAU------- ---------G 3841 A-G-AU-GG- AA-AGU--AA -UGGGCUACA AU--CUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a au---)---- ---------- ---------- UAG-AACAA- 4021 ---------- ------ACGA --AAAAC-UA C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-AU-A--GA -C-AUGAGG- -GUGGAUUUA 4141 G-U--AGUAA A-UAAGGA(- auaga-ga-- --)GCCUUAU U-AA------ ---------- 4201 ---------- ---------- ---------- ---------- ---------- acuu--GGCC 4261 CUGGGA-CG- UGUACAAA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aauagccac- 4381 --uga-uagc uu-------a auaaccuu-- --------ac ucu---gcaa auc------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC ACGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGcaca a--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.idioo 5213 bp RNA RNA 22-SEP-1998 DEFINITION Mitochondrion Chirixalus idiooticus.; . ACCESSION AF0263 7 KEYWORDS . SOURCE Mitochondrion Chirixalus idiooticus. ORGANISM Mitochondrion Chirixalus idiooticus. REFERENCE 1 (bases 1 to 546) AUTHORS Richards,C.M. and Moore,W.S. TITLE A Molecular Phylogenetic Study of the Old World Treefrog Family Rhacophoridae JOURNAL Herpetol. J. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 546) AUTHORS Richards,C.M. and Moore,W.S. TITLE Direct Submission JOURNAL Submitted (23-SEP-1997) Biology, Wayne State University, Detroit, MI 48202, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF026347 BASE COUNT 161 a 119 c 94 g 104 t 4735 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|-~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~u 2521 c--aa----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- cuc(acac)c a------acc 2701 a-g|--C|GC C-AGGG-AAU UACGAGU(-- --aaa--)AC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUG- UCCUAc-ccc cuACUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUA U-ACCCAACC AUCCCUUGCU ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GC-AA|G-CU UAC-|CAU(A --UGA)ACG- -----(cau- 3181 aa-)------ C-AGUAGGCC CAA-GGAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuagc- 3781 ---------G CCACAA-CGU C-AGGUCAAG G|UGCA|GCU UAU------- ---------G 3841 A-G-AU-GG- AA-AGU--AA -UGGGCUACA AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a au---)---- ---------- ---------- UAG-AACAA- 4021 ---------- ------ACGA --AAAAC-UA C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-AU-A--GA -C-AUGAAG- -GUGGAUUUA 4141 G-U--AGUAA A-UAAGGA(- auaga-ga-- --)GCCUUAU U-AA------ ---------- 4201 ---------- ---------- ---------- ---------- ---------- acuu--GGCC 4261 CUGGGA-CG- UGUACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aauagccuu- 4381 --uaa-cagc uu-------a auaaccua-- --------ac ccu---gcaa auc------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC ACGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGcaca a--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.Chir.sp 5213 bp RNA RNA 22-SEP-1998 DEFINITION Mitochondrion Chiromantis sp.; . ACCESSION AF0263 5 KEYWORDS . SOURCE Mitochondrion Chiromantis sp. ORGANISM Mitochondrion Chiromantis sp. REFERENCE 1 (bases 1 to 546) AUTHORS Richards,C.M. and Moore,W.S. TITLE A Molecular Phylogenetic Study of the Old World Treefrog Family Rhacophoridae JOURNAL Herpetol. J. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 546) AUTHORS Richards,C.M. and Moore,W.S. TITLE Direct Submission JOURNAL Submitted (23-SEP-1997) Biology, Wayne State University, Detroit, MI 48202, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF026345 BASE COUNT 148 a 113 c 102 g 113 t 4737 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|-~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~u 2521 c--uu----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -cu(acac)c u------aca 2701 a-c|--C|GC C-AGGG-AAC UACGAGC(-- uuua---)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUG- KCCCAc---c caACUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUAUUCC 2821 A--------- ----)CGUUA U-ACCUAACC ACUUUUUGCU ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|CA- 3121 |CC|-UC--C |G------UC GU-AA|G-CU UAC-|CAU(A --UGA)ACG- -----(cau- 3181 aa-)------ C-AGUAGGCC UAA-GGAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuaac- 3781 ---------G CCACAA-UGG C-AGGUCAAG G|UGCA|GCU CAC------- ---------A 3841 A-A-GU-GG- -U-AGA--GA -UGAGCUACA AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a gu---)---- ---------- ---------- UAG-AACAA- 4021 ---------- ------ACGA --AAUAC-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-A--GU -C-AUGAAG- -GUGGAUUUA 4141 G-U--AGUAA G-UGGGGA(- auaga-ga-- --)GCCCCAC U-AAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUC--GGCC 4261 CUGGGA-CG- UGUACAAA-C -CGCCCGUCG C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gauagccua- 4381 --cca-uuau gu-------u aauaacgc-- --------aa uc-uacgcgc cuu------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-U AAGUCGUAAC AUGGUAAG-U AUA-CU(GGA 4621 -A)AGU-GU- GCUUGGaaua a--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.xeram 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Chiromantis xerampelina. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Chiromantis xerampelina. ORGANISM Mitochondrion Chiromantis xerampelina. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U22082 LOCUS CXU22082 668 bp DNA VRT 09-AUG-1995 DEFINITION Chiromantis xerampelina 12S ribosomal RNA and 16S ribosomal RNA genes, partial sequence, and Val-tRNA gene, mitochondrial genes encoding mitochondrial RNA, complete sequence. ACCESSION U22082 KEYWORDS . SOURCE Chiromantis xerampelina. ORGANISM Mitochondrion Chiromantis xerampelina Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Osteichthyes; Sarcopterygii; Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Rhacophoridae; Chiromantis. REFERENCE 1 (bases 1 to 668) AUTHORS Richards,C.M. and Moore,W.S. TITLE Using mt rDNA to derive a phylogeny for the African treefrog family, Hyperoliidae JOURNAL Unpublished REFERENCE 2 (bases 1 to 668) AUTHORS Richards,C.M. TITLE Direct Submission JOURNAL Submitted (28-FEB-1995) Christina M. Richards, Biological Sciences, Wayne State University, Detroit, MI 48202, USA COMMENT NCBI gi: 939646 FEATURES Location/Qualifiers source 1..668 /organism="Chiromantis xerampelina" /mitochondrion rRNA <1..507 /product="12S ribosomal RNA" tRNA 508..607 /product="Val-tRNA" rRNA 608..>668 /product="16S ribosomal RNA" BASE COUNT 222 a 162 c 122 g 157 t 5 others ORIGIN BASE COUNT 164 a 129 c 100 g 113 t 4707 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~--~~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- ---~--~~~- --~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~~- -----(~~~~ -~-------- ---------- ---------- ------)--- 1381 ----~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~~-)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)--~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~--~~~~ ~~-------~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~~~~~ ---~~~~~(~ 2341 ~~~~~)~~~~ --------~~ ~~~~-~~~-~ ~~~------- -----~~~~~ -~~~(-~~~~ 2401 -)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~~~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -GCCU-AAC- CUCNAA-aaa 2521 u--cu----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -au(uuac)u ----ccuacu 2701 a-c|--C|GC C-AGGGUAAC UACGAGC(-- -CUUA--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUG- UCCCA---CC CAACUAGA|G GAGCCUGU-C |CUAUA--AU CG(AUACUCC 2821 Acaucgauac ucca)CGUUA U-ACCUAGCC ACUUUUUGCU ---------- ---------- 2881 (-------ua u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|CA- 3121 |CC|-UC--C |G------UC GU-AA|G-CU UAC-|CAU(A --UGA)ACG- -----(cac- 3181 aa-)------ C-AGUAGGCA UAA-GGAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cacac- 3781 ---------G CCACAA-UGG C-AGGUCAAG G|UGCA|GCU CAC------- ---------A 3841 A-A-GU-GG- -A-AGA--GA -UGAGCUACA AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa u----)---- ---------- ---------- UAG-AACAU- 4021 ---------- ------ACGA --AAcau-ua u-a(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) c-au-a--au ca--UGAGG- -GUGGAUUUA 4141 G-U--AGUAA G-UGGGGA(- auaga-ga-- --)GCCCCAC U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUC--GGCC 4261 CUGGGA-CG- UGUACAAA-C -CGCCCGUCG C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aauagccca- 4381 acauu-a--- gu-------- -cuaua---- -------aca caacacaagc g-ccuu---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-U AAGUCGUAAC AUGGUAAG-U AUA-CU(GGA 4621 -A)AGU-GU- ACUUGGAACA A--------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.mjobe 5213 bp RNA RNA 22-SEP-1998 DEFINITION Mitochondrion Philautus mjobergi.; . ACCESSION AF0263 8 KEYWORDS . SOURCE Mitochondrion Philautus mjobergi. ORGANISM Mitochondrion Philautus mjobergi. REFERENCE 1 (bases 1 to 564) AUTHORS Richards,C.M. and Moore,W.S. TITLE A Molecular Phylogenetic Study of the Old World Treefrog Family Rhacophoridae JOURNAL Herpetol. J. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 564) AUTHORS Richards,C.M. and Moore,W.S. TITLE Direct Submission JOURNAL Submitted (23-SEP-1997) Biology, Wayne State University, Detroit, MI 48202, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF026348 BASE COUNT 162 a 108 c 93 g 131 t 4719 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|-~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~gcca-agc- cauaaa-cau 2521 c--aa----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- cuu(acaa)c u------aua 2701 a-a|--C|GC C-AGGG-UAU UACGAGC(-- --cua--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUG- UCCCAc---c acUCUAGA|G GAGCCUGU-U |CCAUA--AU CG(AUGAUCC 2821 A--------- ----)CGUUA U-ACCUAACC AUUUUUUGCU ---------- ---------- 2881 (-------uu u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- --uC---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC Gc-AA|G-CU UAC-|CAU(A --UAA)AUG- -----(aau- 3181 ua-)------ U-AGUGGGCC CAA-UAGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---uugaac- 3781 ---------U CUAUUA-CGU C-AGGUCAAG G|UGCA|GCU UAU------- ---------A 3841 A-A-AU-GG- AAaAG---GA -UGAGCUACA AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a cu---)---- ---------- ---------- UAG-AACAA- 4021 ---------- ------ACGA --AUUAC-UA C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-AC-A--GU -C-AUGAAG- -GUGGAUUUA 4141 G-U--AGUAA A-UAGGGA(- auaga-ga-- --)GCCCUAU U-AA------ ---------- 4201 ---------- ---------- ---------- ---------- ---------a uuuu--AGCC 4261 CUGGGA-CG- UGUACAAA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aauagccuu- 4381 --uua-uugc uu-------c auaaccua-- --------ac aua---gcac cuu------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GU- ACUUGGuaua a--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.peter 5213 bp RNA RNA 22-SEP-1998 DEFINITION Mitochondrion Philautus petersi.; . ACCESSION AF0263 9 KEYWORDS . SOURCE Mitochondrion Philautus petersi. ORGANISM Mitochondrion Philautus petersi. REFERENCE 1 (bases 1 to 551) AUTHORS Richards,C.M. and Moore,W.S. TITLE A Molecular Phylogenetic Study of the Old World Treefrog Family Rhacophoridae JOURNAL Herpetol. J. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 551) AUTHORS Richards,C.M. and Moore,W.S. TITLE Direct Submission JOURNAL Submitted (23-SEP-1997) Biology, Wayne State University, Detroit, MI 48202, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF026349 BASE COUNT 159 a 120 c 92 g 111 t 4731 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|-~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~gcca-agc- ca-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uaa(acau)c a------aua 2701 u-a|--C|GC C-AGGG-UAU UACGAGC(-- --cua--)GC UUA--AAACC CAAAGGAC-U 2761 UG|ACGGUG- UCCCAc---c ccACUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUA U-ACCUAACC AUUUUUUGCU ---------- ---------- 2881 (-------uu u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GC-AA|G-CC UAC-|CAU(A --UAA)AUG- -----(aac- 3181 aa-)------ U-AGUAGGCC UAA-CAGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---ccaaac- 3781 ---------A CUAUAA-CGU C-AGGUCAAG G|UGCA|GCU UAU------- ---------A 3841 A-A-AU-GG- AA-AGU--AA -UGGGCUACA AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g uc---)---- ---------- ---------- UAG-AACAA- 4021 ---------- ------ACGA --AUUAC-UA C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-AC-A--GU -C-AUGAAG- -GCGGAUUUA 4141 G-C--AGUAA A-CGGGAA(- auaaa-ga-- --)GCCCCGU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UCU--GGCC 4261 CUGGGA-CG- UGUACAAA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aacagccuc- 4381 --acu-uagc uu-------c auaaccua-- --------ac aca---gcac uuu------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-U AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGcaca a--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.leuco 5213 bp RNA RNA 22-SEP-1998 DEFINITION Mitochondrion Polypedates leucomystax.; . ACCESSION AF0263 1 KEYWORDS . SOURCE Mitochondrion Polypedates leucomystax. ORGANISM Mitochondrion Polypedates leucomystax. REFERENCE 1 (bases 1 to 554) AUTHORS Richards,C.M. and Moore,W.S. TITLE Family Rhacophoridae A Molecular Phylogenetic Study of the Old World Treefrog JOURNAL Herpetol. J. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 554) AUTHORS Richards,C.M. and Moore,W.S. TITLE Direct Submission JOURNAL Submitted (23-SEP-1997) Biology, Wayne State University, Detroit, MI 48202, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF026351 BASE COUNT 163 a 104 c 92 g 126 t 4728 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|-~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~acca-uaa- auuuc----- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- acu(uaca)c u------uaa 2701 a-a|--C|GC C-AGGG-UAC UACGAGC(-- --ccc--)GC UUA--AAACC CAAAGGAU-U 2761 UG|ACGGUG- UUCCAc---c caACUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUC U-ACCUAACC AUUUUUUGUU ---------- ---------- 2881 (-------ac u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-AA|G-CU UAU-|CAU(U --UGA)AUG- -----(aga- 3181 aa-)------ A-AGUAAGCA CAA-GGAC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaaaa- 3781 ---------G CCAAAA-CGU C-AGGUCAAG G|UGCA|GCU UAU------- ---------A 3841 A-A-AU-GG- A--AGA--AA -UGAGCUACA AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a uu---)---- ---------- ---------- UAG-AACAC- 4021 ---------- ------ACGA --AUUAC-UG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-AA-A--GU -C-AUGAAG- -GUGGAUUUA 4141 G-C--AGUAA G-UAAGGA(- auaga-ga-- --)GCCUUAC U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--GGCC 4261 CUGG-A-CG- UGUACAAA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gauagcuuu- 4381 uuacc-aguu ua-------a auaaccuau- --------uu gua---gccc cuu------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG-U AUA-CU(GGA 4621 -A)AGU-GU- ACUUGGaaua c--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.megac 5213 bp RNA RNA 22-SEP-1998 DEFINITION Mitochondrion Polypedates megacephala.; . ACCESSION AF0263 0 KEYWORDS . SOURCE Mitochondrion Polypedates megacephala. ORGANISM Mitochondrion Polypedates megacephala. REFERENCE 1 (bases 1 to 561) AUTHORS Richards,C.M. and Moore,W.S. TITLE A Molecular Phylogenetic Study of the Old World Treefrog Family Rhacophoridae JOURNAL Herpetol. J. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 561) AUTHORS Richards,C.M. and Moore,W.S. TITLE Direct Submission JOURNAL Submitted (23-SEP-1997) Biology, Wayne State University, Detroit, MI 48202, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF026350 BASE COUNT 153 a 106 c 103 g 127 t 4724 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|-~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~gcca-cac- guunau-uug 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aac(uucc)c u------uua 2701 a-a|--C|GC C-AGGG-UUC UUCGAGC(-- --cga--)GC UUA--AAACC CUAAGGAU-U 2761 UG|ACGGUG- UCCCAc---c cuACUAGA|G GAGCUUGU-U |CUAUA--AU CG(AUGAUCC 2821 A--------- ----)CGAUA U-ACCUAACC AUUUUUUGCU ---------- ---------- 2881 (-------au u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GU-AA|G-CU CAC-|CGC(U --UGA)GUG- -----(aga- 3181 aa-)------ A-AGUAAGCA AAA-GGGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cuaaa- 3781 ---------G CCAAAA-CGU C-AGGUCAAG G|UGCA|GCU UAU------- ---------A 3841 A-A-AU-GG- AA-GGA--AA -UGGGCUACA AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a uu---)---- ---------- ---------- UAG-AAUAC- 4021 ---------- ------ACGA --AUUAC-UG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-AA-A--GU -C-AUgagG- -GUGGAUUUA 4141 G-U--AGUAA G-UGAGGA(- auaga-ga-- --)GCCUCAC U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUC--AGCC 4261 CUGGAA-CG- CGUACAAA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gauagcuuc- 4381 auuaa-uagu ua-------a nuaaccuau- --------uc acc---gcgu uuu------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG-C AUA-CU(GGA 4621 -A)AGU-GU- UCUUGGaaua a--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.Mant.sp 5213 bp RNA RNA 22-SEP-1998 DEFINITION Mitochondrion Mantella sp.; . ACCESSION AF0263 3 KEYWORDS . SOURCE Mitochondrion Mantella sp. ORGANISM Mitochondrion Mantella sp. REFERENCE 1 (bases 1 to 557) AUTHORS Richards,C.M. and Moore,W.S. TITLE A Molecular Phylogenetic Study of the Old World Treefrog Family Rhacophoridae JOURNAL Herpetol. J. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 557) AUTHORS Richards,C.M. and Moore,W.S. TITLE Direct Submission JOURNAL Submitted (23-SEP-1997) Biology, Wayne State University, Detroit, MI 48202, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF026353 BASE COUNT 166 a 103 c 98 g 119 t 4727 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|-~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~guaa-aam- auuua----- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uuu(acac)c a------aca 2701 a-g|--C|GC C-AGGG-AAU UACGAGC(-- --a-uau)GC UUA--AAAUC CAAAGGAU-U 2761 UG|ACGGUG- UCCCAc---c caCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 U--------- ----)CGAUA U-ACCCAACC AUUUCUUGCU ---------- ---------- 2881 (-------uu u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GC-AA|G-CU UAC-|CAU(U --UGA)AUG- -----(uaa- 3181 aa-)------ G-AGUAGGUU UAA-GGAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ucccc- 3781 ---------A UCAAUA-CGU C-AGGUCAAG G|UGCA|GCC AAU------- ---------G 3841 U-A-AU-GG- AA-AGU--AA -UGGGCUACA AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAG-AACAA- 4021 ---------- ------ACGA --AACAC-UG C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) A-AC-A--GU -C-AUGAAG- -GCGGAUUUA 4141 G-U--AGUAA A-AGGAGA(- auaga-ga-- --)GCUCCUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CAA--GGCC 4261 CUGGGA-CG- UGUACAAA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< agcggcaua- 4381 -aaau-uuaa gu-------u uuuaaccc-- --------aa caa---aaga aauc------ 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CU(GGA 4621 -A)AGU-GC- ACUUGGuuaa c--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.grand 5213 bp RNA RNA 22-SEP-1998 DEFINITION Mitochondrion Mantidactylus grandidieri.; . ACCESSION AF0263 2 KEYWORDS . SOURCE Mitochondrion Mantidactylus grandidieri. ORGANISM Mitochondrion Mantidactylus grandidieri. REFERENCE 1 (bases 1 to 571) AUTHORS Richards,C.M. and Moore,W.S. TITLE A Molecular Phylogenetic Study of the Old World Treefrog Family Rhacophoridae JOURNAL Herpetol. J. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 571) AUTHORS Richards,C.M. and Moore,W.S. TITLE Direct Submission JOURNAL Submitted (23-SEP-1997) Biology, Wayne State University, Detroit, MI 48202, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF026352 BASE COUNT 161 a 131 c 99 g 109 t 4713 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|-~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~)~~ ~~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~gucc-agc- cguaaa-aac 2521 u--uaa---- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- cuc(acau)c a------aca 2701 a-g|--C|GC CaGGGN-AAU UACGAGC(-- --a-caa)GC UUA--AAACC CAAAGGAU-U 2761 UG|ACGGUG- UCCCAu---c ccCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUGAUCC 2821 U--------- ----)CGAUA U-ACCUCACC AUUUUUGGCU ---------- ---------- 2881 (-------uu u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUG-UA|UA- 3121 |CC|-UC--C |G------UC GC-AA|G-CU UAC-|CAU(U --UGA)UUG- -----(ccc- 3181 ca-)------ A-AGUAAGUU CAA-CGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --ccccccc- 3781 ---------G CCAAUA-CGU C-AGGUCAAG G|UGCA|GCC AAU------- ---------A 3841 A-A-AU-GG- AA-AGC--AA -UGGGCUACA AU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ca---)---- ---------- ---------- UAG-AACAA- 4021 ---------- ------ACGA --AAAAC-UA C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-AU-A--GU -C-AUGAAG- -GCGGAUUUA 4141 G-U--AGUAA A-AAAAGA(- cuagc-ga-- --)GCUUCUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------c aaaa--GGCC 4261 CCGGGA-CG- UGUACAAA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gauagcacc- 4381 --caa-cuua gc------ua cauaacaccu --------gc uca---gcac cuu------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG-U GUA-CC(GGA 4621 -A)GGU-GC- ACUUGGuuaa a--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.mexic 5213 bp RNA RNA 01-MAY-1998 DEFINITION Mitochondrion Ambystoma mexicanum.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. ACCESSION Y10947 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. SOURCE Mitochondrion Ambystoma mexicanum. ORGANISM Mitochondrion Ambystoma mexicanum. REFERENCE 1 (bases 1 to 2581) AUTHORS Feller,A.E. and Hedges,S.B. TITLE Molecular evidence for a Salamander-Caecilian clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2581) AUTHORS Hedges,B. TITLE Direct Submission JOURNAL Submitted (03-FEB-1997) B. Hedges, Pennsylvania State University, Dept. Biology, 208 Mueller Lab., University Park, PA 16802, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y10947 BASE COUNT 354 a 185 c 161 g 224 t 4289 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---AAAGAUU 661 (UGG-)U-CC U|AAUCU-UA CUA-UUAAUU -A-UGAU-UA |UA-UU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCACCCCGGU GAAAA---UG C|CCU-Aaau --uu-ac--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uaaua a----)---- 1261 ---------- ---------- --ua--aac- --uAAGGAGC |--------- uGAUAUCA-- 1321 -g----a--- ------uac- ---------- ---------- ---------- ---------- 1381 -----|---- GCCCA--uua c|AUCUU-GC --|------- (-uaa--)-- -------GC| 1441 CACA------ ---------- ---------- -|--CCA--( CAAG-)--GG GAuc---C-A 1501 GCA|GUG-AU AAACAUUGAA a-aaUAAGC( ---------- gaca----)G CUUGA-ACC| 1561 A|-GUAA-U- AA-UCUaaA- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -UAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAGA|--- -AAC-CCA-- 1981 AAUUA-AUUA A--------c aaCGGC|UCA AAGAGCGGUU -A-aa--|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------ugaa aauuuuuuau acaaua--gu -uu--|aaaa aau-ua-acu ---aaGCC(G 2341 UUAUA)CGCa au------ag uua-aauc-u aaa------- ----aucaac -aAC(-GAAA 2401 -)GU|a---- ----auacua auaaauuaaa aau------- auu-gaagCC GCGAA-AGCU 2461 A-UGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- CAUAAA-cuu 2521 u--ga----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ----ucuu-- ---------- 2701 u-c|--C|GC C-aGAG-UAC UACGAGC(-- -aaua--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUCUACA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU UG(AUAACCC 2821 C--------- ----)CAAUA A-ACCUCACC ACCCAUUGCA ---------- ---------- 2881 (-------aa ac-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------aGC CUA-UA|UA- 3121 |CC|-GC--C |G------CC GU-CA|G-CU UAC-|CCU(U --UAA)GGG- -----(aaa- 3181 ac-)------ A-AGUAAGCA AAA-UGAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- (------)-- -----aaac- 3781 ---------A UAAAAA-CGU C-AGGUCAAG G|UGUA|GCA CAU------- ---------G 3841 G-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- --u--)---- ---------- ---------- UAG-AAaaa- 4021 ---------- ------ACGA --AAAAC-CA A-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) A-AA-A--GU -U--GGAAG- -GAGGAUUUA 4141 G-C--AGUAA A-AAGAAA(- uaaga-gu-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -Auu-uggcu 4261 AUAGAG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aacaucuau- 4381 a---u-uuaa guaau----- --uaa----- ----cuaacc uaauaaaaca a--------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-A AAGUCGUAAC AUGGUAAG-U UUA-CC(GGA 4621 -A)GGU-GA- ACUUGGAU-- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.D.aen.1 5213 bp RNA RNA 23-JAN-1998 DEFINITION Mitochondrion Desmognathus aeneus.; . ACCESSION U71237 KEYWORDS . SOURCE Mitochondrion Desmognathus aeneus. ORGANISM Mitochondrion Desmognathus aeneus. REFERENCE 1 (bases 1 to 1161) AUTHORS Titus,T.A. and Larson,A. TITLE Molecular phylogenetics of Desmognathine salamanders (Caudata: Plethodontidae): A reevaluation of evolution in ecology, life history, and morphology JOURNAL Syst. Biol. 45, 451-472 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1161) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (19-SEP-1996) Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U71237 BASE COUNT 251 a 120 c 106 g 159 t 4577 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~-------- ---------- ---------- ------)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)~~~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ~~~~~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~~~~ ~~~~~~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------~ ~~~GGC|ccA AAGGGUAGUU -U-uAGa|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -caaaauaaa aauaga--au u----|uaaa auuuauuua- -----GCG(G 2341 UUAUA)UAUA ------aaua uaaa-aug-u aaa------- ----uccaaa -aAC(-GAAA 2401 -)GU|u---- ----auucua -u-uuacu-- ---------- CUc-gaacCU ACUAC-AGCU 2461 G-AGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AAC- UUUAAA---- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(cuga)a u-------cu 2701 c-c|--C|GC C-AGAG-CAC UACGAGC(-- -caua--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUCUACA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(ACACCCC 2821 C--------- ----)CGAUA A-ACCUCACC ACCUCUUGCU ---------- ---------- 2881 (-------au ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-AC--C |G------UC ---CA|G-UU CAC-|CUU(U --UAA)AAG- -----(aau- 3181 aa-)------ U-AGUGAACG AAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuaaa- 3781 ---------A UAAAAA-AGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-G-AU-GG- AA-AGA--AA -UGGGCUACA UU--UUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAA-AAaac- 4021 ---------- ------ACGG --AAUAU-UA U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AA-A--AU -A--UCAAG- -GAGGAUUUA 4141 G-A--AGUAA A-AAGAAA(- aaaga-gu-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACU--GGCA 4261 AUAGAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaaaaau-- 4381 a---u-aaaa ua-------- --aau----- ----aauu-- auuaaua-ag uaua------ 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAA-AGG-U AAGUCGUAAC AUGGUAAG-U CUA-CC(GGA 4621 -A)GGU-GG- CCUUGGAUAU ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.aen.2 5213 bp RNA RNA 23-JAN-1998 DEFINITION Mitochondrion Desmognathus aeneus.; . ACCESSION U71238 KEYWORDS . SOURCE Mitochondrion Desmognathus aeneus. ORGANISM Mitochondrion Desmognathus aeneus. REFERENCE 1 (bases 1 to 1163) AUTHORS Titus,T.A. and Larson,A. TITLE history, and morphology Molecular phylogenetics of Desmognathine salamanders (Caudata: Plethodontidae): A reevaluation of evolution in ecology, life JOURNAL Syst. Biol. 45, 451-472 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1163) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (19-SEP-1996) Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U71238 BASE COUNT 255 a 123 c 106 g 156 t 4573 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~-------- ---------- ---------- ------)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)~~~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ~~~~~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~~~~ ~~~~~~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------~ ~~~GGC|ccA AAGGGUAGUU -U-uAGa|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -cacuaacaa aauaga--ac u----|uaaa acuuauuua- -----GUA(G 2341 UUAUA)UACA ------aaua uaaa-aug-u aaa------- ----cccaaa -gAC(-GAAA 2401 -)GU|u---- ----auucua -u-augau-- ---------- CUu-gaacCU ACUAC-AGCU 2461 A-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUA-AAC- UUUAAA---- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(augg)a u------uuu 2701 c-c|--C|GC C-AGAG-CAC UACGAGC(-- -uaca--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUCUACA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(ACACCCC 2821 C--------- ----)CGAUA A-ACCUCACC ACCCCUUGCC ---------- ---------- 2881 (-------ac ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC UUA-UA|UA- 3121 |CC|-AC--C |G------CC CU-CA|G-UU UAC-|CCU(U --UAA)AAG- -----(aac- 3181 aa-)------ U-AGUGAACA AAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaaaa- 3781 ---------A UAAAAA-AGU C-AGGUCAAG G|UGUA|GCA AAU------- ---------G 3841 A-G-GU-GG- AA-AGA--AA -UGGGCUACA UU--UUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAA-AAAAc- 4021 ---------- ------ACGG --AGUAU-UA U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-A--AU -A--UAAAG- -GAGGAUUUA 4141 G-A--AGUAA A-AAGAAA(- aaaga-gu-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCA 4261 AUAGAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--UUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaaauaaa- 4381 a---u-aacu ua-------- --aau----- ----aaaa-- aa-uauaauu uaca------ 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAA-AGG-U AAGUCGUAAC AUGGUAAG-U CUA-CC(GGA 4621 -A)GGU-GG- CCUUGGAUAU ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.auric 5213 bp RNA RNA 23-JAN-1998 DEFINITION Mitochondrion Desmognathus auriculatus.; . ACCESSION U71221 KEYWORDS . SOURCE Mitochondrion Desmognathus auriculatus. ORGANISM Mitochondrion Desmognathus auriculatus. REFERENCE 1 (bases 1 to 1164) AUTHORS Titus,T.A. and Larson,A. TITLE Plethodontidae): A reevaluation of evolution in ecology, life history, and morphology Molecular phylogenetics of Desmognathine salamanders (Caudata: JOURNAL Syst. Biol. 45, 451-472 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1164) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (19-SEP-1996) Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U71221 BASE COUNT 260 a 113 c 99 g 167 t 4574 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~-------- ---------- ---------- ------)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)~~~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ~~~~~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~~~~ ~~~~~~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------~ ~~~GGC|cuA AAGGGUAGUU -U-uAG-|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -auauaauaa aauaga--au u----|uaaa a-uuuauuua -----AUA(G 2341 UUAUA)UAUA ------auua uaaa-aug-u aaa------- ----uccaaa -aAC(-GAAA 2401 -)GU|u---- ----auacua -u-acagu-- ---------- CUu-gaacCU ACUAC-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AAC- CUUAAA---- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(acgg)a u------auu 2701 c-c|--C|GC C-AGAG-CAU UACGAGC(-- -uaca--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUCUACA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(ACACCCC 2821 C--------- ----)CGAUA A-ACCUCACC AUUUCUCGCU ---------- ---------- 2881 (-------ac ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-AC--C |G------CC CU-CA|G-UU UAU-|CUU(U --CAA)AAG- -----(aau- 3181 aa-)------ U-AAUGAACA AAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaaaa- 3781 ---------A UAAAAA-AGU C-AGGUCAAG G|UGUA|GCA AAU------- ---------G 3841 A-A-AU-GG- AA-AGA--AA -UGGGCUACA UU--UUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAA-AAaac- 4021 ---------- ------ACGG --AAUAU-UA U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AA-A--AU -A--UAAAG- -AAGGAUUUA 4141 G-A--AGUAA A-AAGAAA(- aaaga-gu-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCA 4261 AUAGAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--UUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaauauau- 4381 a---a-aacu ua-------- --aau----- -----aaa-- uauauaaauu uaua------ 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAA-AGG-U AAGUCGUAAC AUGGUAAG-U CUA-CC(GGA 4621 -A)GGU-GG- CCUUGGAUAU ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.briml 5213 bp RNA RNA 23-JAN-1998 DEFINITION Mitochondrion Desmognathus brimleyorum.; . ACCESSION U71240 KEYWORDS . SOURCE Mitochondrion Desmognathus brimleyorum. ORGANISM Mitochondrion Desmognathus brimleyorum. REFERENCE 1 (bases 1 to 1163) AUTHORS Titus,T.A. and Larson,A. TITLE Molecular phylogenetics of Desmognathine salamanders (Caudata: Plethodontidae): A reevaluation of evolution in ecology, life history, and morphology JOURNAL Syst. Biol. 45, 451-472 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1163) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (19-SEP-1996) Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U71240 BASE COUNT 253 a 116 c 105 g 164 t 4575 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~-------- ---------- ---------- ------)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)~~~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ~~~~~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~~~~ ~~~~~~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------~ ~~~GGC|ccA AAGGGUAGUU -U-uAGa|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- --uauaauaa aauaga--au u----|uaaa auuuauuua- -----GUA(G 2341 UUAUA)UACA ------aaua uaaa-aug-u aaa------- ----cccaaa -gAC(-GAAA 2401 -)GU|u---- ----auacua -u-auauu-- ---------- CUu-gaauCU ACUAC-AGAU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AAC- UUUAAA---- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(augg)a c------cau 2701 c-c|--C|GC C-AGAG-CAC UACGAGC(-- -uaca--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCUACA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(ACACCCC 2821 C--------- ----)CGAUA A-ACCUCACC ACCCCUUGCU ---------- ---------- 2881 (-------au ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC UUA-UA|UA- 3121 |CC|-AC--C |G------CC CU-CA|G-UU CAC-|CUU(U --UAA)AAG- -----(agu- 3181 aa-)------ U-AGUGAACA AAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaaaa- 3781 ---------A UAAAAA-AGU C-AGGUCAAG G|UGUA|GCA AAU------- ---------G 3841 A-G-GU-GG- AA-AGA--AA -UGGGCUACA UU--UUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u a----)---- ---------- ---------- UAA-AAAAc- 4021 ---------- ------ACGG --AAUAU-UA U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AA-U--AU -A--UAAAG- -GAGGAUUUA 4141 G-A--AGUAA A-AAGAAA(- auaga-gu-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCA 4261 AUAGAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaaauaaa- 4381 a---u-aauu ua-------- --aau----- ----aaau-- auauaua-ua uaua------ 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAA-AGG-U AAGUCGUAAC AUGGUAAG-U CUA-CC(GGA 4621 -A)GGU-GG- CCUUGGAUAU ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.con.1 5213 bp RNA RNA 23-JAN-1998 DEFINITION Mitochondrion Desmognathus conanti.; . ACCESSION U71234 KEYWORDS . SOURCE Mitochondrion Desmognathus conanti. ORGANISM Mitochondrion Desmognathus conanti. REFERENCE 1 (bases 1 to 1164) AUTHORS Titus,T.A. and Larson,A. TITLE Molecular phylogenetics of Desmognathine salamanders (Caudata: Plethodontidae): A reevaluation of evolution in ecology, life history, and morphology JOURNAL Syst. Biol. 45, 451-472 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1164) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (19-SEP-1996) Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U71234 BASE COUNT 251 a 111 c 106 g 171 t 4574 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~-------- ---------- ---------- ------)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)~~~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ~~~~~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~~~~ ~~~~~~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------~ ~~~GGC|ccA AAGGGUAGUU -U-uAGg|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- --uauaauaa aauaga--au u----|uaaa acuuauuua- -----GUA(G 2341 UUAUA)UACA ------aaua uaaa-aug-u aaa------- ----cccaaa -gAC(-GAAA 2401 -)GU|u---- ----auacua -u-auauu-- ---------- CUu-gaauCU ACUAU-AACU 2461 G-AGA---GA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AAU- UUUAAA---- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(augg)a u------cuu 2701 c-u|--C|GC C-GGAG-UAC UACGAGC(-- -uaca--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUCUACA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(ACACCCC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-AC--C |G------CC CU--A|G-UU UAC-|CUU(U --UAA)AAG- -----(aau- 3181 aa-)------ U-AGUGAACA AAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaaaa- 3781 ---------A UAAAAA-AGU C-AGGUCAAG G|UGUA|GCA AAU------- ---------G 3841 A-A-AU-GG- AA-AGA--AA -UGGGCUACA UU--UUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAA-AAaac- 4021 ---------- ------ACGG --AAUAU-UA U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AA-A--AU -A--UAAAG- -GAGGAUUUA 4141 G-A--AGUAA A-AAGAAA(- aaaga-gu-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUC--GGCA 4261 AUAGAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--UUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaaauaaa- 4381 g---u-aauu ua-------- --aau----- ----uaua-u guauaua-uu uaua------ 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAA-AGG-U AAGUCGUAAC AUGGUAAG-U CUA-CC(GGA 4621 -A)GGU-GG- CCUUGGACAU ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.con.2 5213 bp RNA RNA 23-JAN-1998 DEFINITION Mitochondrion Desmognathus conanti. subsp. (differs only by one nucleotide); . ACCESSION U71235 KEYWORDS . SOURCE Mitochondrion Desmognathus conanti. subsp. (differs only by one nucleotide). ORGANISM Mitochondrion Desmognathus conanti. REFERENCE 1 (bases 1 to 1164) AUTHORS Titus,T.A. and Larson,A. TITLE Molecular phylogenetics of Desmognathine salamanders (Caudata: Plethodontidae): A reevaluation of evolution in ecology, life history, and morphology JOURNAL Syst. Biol. 45, 451-472 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1164) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (19-SEP-1996) Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U71235 BASE COUNT 253 a 111 c 104 g 171 t 4574 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~-------- ---------- ---------- ------)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)~~~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ~~~~~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~~~~ ~~~~~~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------~ ~~~GGC|ccA AAGGGUAGUU -U-uAGg|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- --uauaauaa aauaga--au u----|uaaa acuuauuua- -----GUA(G 2341 UUAUA)UACA ------aaua uaaa-aug-u aaa------- ----cccaaa -gAC(-GAAA 2401 -)GU|u---- ----auacua -u-auauu-- ---------- CUu-gaauCU ACUAU-AACU 2461 G-AGA---GA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AAU- UUUAAA---- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(augg)a u------cuu 2701 c-u|--C|GC C-GGAG-UAC UACGAGC(-- -uaca--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUCUACA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(ACACCCC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-AC--C |G------CC CU--A|G-UU UAC-|CUU(U --UAA)AAG- -----(aau- 3181 aa-)------ U-AGUGAACA AAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaaaa- 3781 ---------A UAAAAA-AGU C-AGGUCAAG G|UGUA|GCA AAU------- ---------G 3841 A-A-AU-GA- AA-AGA--AA -UGGGCUACA UU--UUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAA-AAaac- 4021 ---------- ------ACGG --AAUAU-UA U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AA-A--AU -A--UAAAG- -GAGGAUUUA 4141 G-A--AGUAA A-AAGAAA(- aaaga-gu-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUC--GGCA 4261 AUAGAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--UUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaaauaaa- 4381 a---u-aauu ua-------- --aau----- ----uaua-u guauaua-uu uaua------ 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAA-AGG-U AAGUCGUAAC AUGGUAAG-U CUA-CC(GGA 4621 -A)GGU-GG- CCUUGGACAU ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.fus.1 5213 bp RNA RNA 23-JAN-1998 DEFINITION Mitochondrion Desmognathus fuscus.; . ACCESSION U71222 KEYWORDS . SOURCE Mitochondrion Desmognathus fuscus. ORGANISM Mitochondrion Desmognathus fuscus. REFERENCE 1 (bases 1 to 1161) AUTHORS Titus,T.A. and Larson,A. TITLE history, and morphology Molecular phylogenetics of Desmognathine salamanders (Caudata: Plethodontidae): A reevaluation of evolution in ecology, life JOURNAL Syst. Biol. 45, 451-472 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1161) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (19-SEP-1996) Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U71222 BASE COUNT 259 a 109 c 98 g 171 t 4576 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~-------- ---------- ---------- ------)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)~~~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ~~~~~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~~~~ ~~~~~~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------~ ~~~GGC|cuA AAGGGUAGUU -U-uAG-|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -aucuaauaa aauaga--au u----|uaaa a-uuuauuua -----AUA(G 2341 UUAUA)UAUA ------auua uaaa-aug-u aaa------- ----uccaaa -aAC(-GAAA 2401 -)GU|u---- ----auacua -u-auaau-- ---------- CUu-gaauCU ACUAU-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AAC- CUUAAA---- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(augg)a u------auu 2701 c-c|--C|GC C-AGAG-CAU UACGAGC(-- -uaca--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUCUAUA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(ACACUCC 2821 C--------- ----)CGAUA A-ACCUCACC AUUUCUCGCU ---------- ---------- 2881 (-------ac ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-AC--C |G------CC CU-CA|G-UU CAU-|CUU(U --UAA)AAG- -----(aau- 3181 aa-)------ U-AAUGAACA AAA-UGAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaaaa- 3781 ---------A UAAAAA-AGU C-AGGUCAAG G|UGUA|GCA AAU------- ---------G 3841 A-A-AU-GG- AA-AGA--AA -UGGGCUACU UU--UUUAA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAA-AAa--- 4021 ---------- ------ACGG --AAUAU-UA U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AA-A--AU -A--UAAAG- -AAGGAUUUA 4141 G-A--AGUAA A-AAGAAA(- aaaga-gu-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCA 4261 AUAGAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--UUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaauauau- 4381 a---a-aacu ua-------- --aau----- -----aaaua ua--uaaacu uaca------ 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAA-AGG-U AAGUCGUAAC AUGGUAAG-U CUA-CC(GGA 4621 -A)GGU-GG- CCUUAGAUAU ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.fus.2 5213 bp RNA RNA 23-JAN-1998 DEFINITION Mitochondrion Desmognathus fuscus.; . ACCESSION U71241 KEYWORDS . SOURCE Mitochondrion Desmognathus fuscus. ORGANISM Mitochondrion Desmognathus fuscus. REFERENCE 1 (bases 1 to 1162) AUTHORS Titus,T.A. and Larson,A. TITLE history, and morphology Molecular phylogenetics of Desmognathine salamanders (Caudata: Plethodontidae): A reevaluation of evolution in ecology, life JOURNAL Syst. Biol. 45, 451-472 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1162) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (19-SEP-1996) Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U71241 BASE COUNT 253 a 114 c 106 g 166 t 4574 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~-------- ---------- ---------- ------)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)~~~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ~~~~~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~~~~ ~~~~~~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------~ ~~~GGC|cuA AAGGGUAGUU -U-uAGa|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- --uauaauaa aauaga--au u----|uaaa auuuauuua- -----GUA(G 2341 UUAUA)UACA ------aaua uaaa-aug-u aaa------- ----cccaaa -gAC(-GAAA 2401 -)GU|u---- ----auacua -u-auauu-- ---------- CUu-gaauCU ACUAU-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AAC- UUUAAA---- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(augg)a u------cau 2701 c-c|--C|GC C-AGAG-CAC UACGAGC(-- -uaca--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUCUAUA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(ACACCCC 2821 C--------- ----)CGAUA A-ACCUCACC AUCUCUUGCC ---------- ---------- 2881 (-------au ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-AC--C |G------CC CU-CA|G-UU CAC-|CUU(U --UAA)AAG- -----(aau- 3181 aa-)------ U-AGUGAACA AAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaaaa- 3781 ---------A UAAAAA-AGU C-AGGUCAAG G|UGUA|GCA AAU------- ---------G 3841 A-A-AU-GG- AA-AGA--AA -UGGGCUACA UU--UUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAA-AAAAc- 4021 ---------- ------ACGG --AAUAU-UG U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-A--AU -A--UAAAG- -GAGGAUUUA 4141 G-A--AGUAA A-AAGAAA(- aaaga-gu-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACU--GGCA 4261 AUAGAG-CA- CGCACACA-C -CGCCCGUCG C-CCU--GUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaauaaaa- 4381 ----u-aauu ua-------- --aau----- ----aaau-- auauaaucuu uaca------ 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAA-AGG-U AAGUCGUAAC AUGGUAAG-U CUA-CC(GGA 4621 -A)GGU-GG- CCUUGGAUAU ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.imita 5213 bp RNA RNA 23-JAN-1998 DEFINITION Mitochondrion Desmognathus imitator.; . ACCESSION U71230 KEYWORDS . SOURCE Mitochondrion Desmognathus imitator. ORGANISM Mitochondrion Desmognathus imitator. REFERENCE 1 (bases 1 to 1162) AUTHORS Titus,T.A. and Larson,A. TITLE history, and morphology Molecular phylogenetics of Desmognathine salamanders (Caudata: Plethodontidae): A reevaluation of evolution in ecology, life JOURNAL Syst. Biol. 45, 451-472 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1162) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (19-SEP-1996) Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U71230 BASE COUNT 255 a 113 c 106 g 164 t 4575 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~-------- ---------- ---------- ------)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)~~~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ~~~~~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~~~~ ~~~~~~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------~ ~~~GGC|ccA AAGGGUAGUU -U-uAGa|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- --caugauaa aauaga--au u----|uaaa ac-uuauuua -----AUA(G 2341 UUAUA)UAUA ------aaca uaaa-aug-u aaa------- ----uccaaa -aAC(-GAAA 2401 -)GU|u---- ----auacua -u-auauu-- ---------- CUu-gaauCU ACUAC-AAUU 2461 G-AGG---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AAC- UUUAAA---- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(augg)a u-------uu 2701 c-c|--C|GC C-AGAG-AAC UACGAGC(-- -uaca--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUCUACA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(ACACCCC 2821 C--------- ----)CGAUA A-ACCUCACC ACUUCUUGCU ---------- ---------- 2881 (-------ac ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-AC--C |G------UC CU-CA|G-UU CAC-|CUU(U --UAA)AAG- -----(aau- 3181 aa-)------ U-AGUGAACA AAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ucaaa- 3781 ---------A UAAAAA-AGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a ua---)---- ---------- ---------- AAA-AAaac- 4021 ---------- ------ACGG --AGUAU-UA U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AA-A--GU -A--UAAAG- -GAGGAUUUA 4141 G-A--AGUAA A-AAGAAA(- aaaga-gu-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCA 4261 AUAGAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaaauaaa- 4381 a---u-aagu ua-------- --aau----- ----aaauau a--uaaa-uu uaua------ 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAA-AGG-U AAGUCGUAAC AUGGUAAG-U CUA-CC(GGA 4621 -A)GGU-GG- CCUUGGAUAU ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.mar.1 5213 bp RNA RNA 23-JAN-1998 DEFINITION Mitochondrion Desmognathus marmoratus.; . ACCESSION U71224 KEYWORDS . SOURCE Mitochondrion Desmognathus marmoratus. ORGANISM Mitochondrion Desmognathus marmoratus. REFERENCE 1 (bases 1 to 1164) AUTHORS Titus,T.A. and Larson,A. TITLE history, and morphology Molecular phylogenetics of Desmognathine salamanders (Caudata: Plethodontidae): A reevaluation of evolution in ecology, life JOURNAL Syst. Biol. 45, 451-472 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1164) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (19-SEP-1996) Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U71224 BASE COUNT 253 a 121 c 104 g 161 t 4574 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~-------- ---------- ---------- ------)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)~~~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ~~~~~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~~~~ ~~~~~~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------~ ~~~GGC|ccA AAGGGUAGUU -U-uAGg|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- --uauaauaa aauaga--au u----|uaaa ac-uuauuua -----GUA(G 2341 UUAUA)UACA ------aaua uaaa-aug-u aaa------- ----cccaaa -gAC(-GAAA 2401 -)GU|u---- ----auacua -u-auauu-- ---------- CUu-gaauCU ACUAU-AGCU 2461 G-AGA---AA CAAACUAGG( AUUAGAUAC) CCUA-CUAU| -GCUC-AAC- UUUAAA---- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(ucgg)a c------cuu 2701 c-c|--C|GC C-AGAG-CAC UACGAGC(-- -caca--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUCUACA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(ACACUCC 2821 C--------- ----)CGAUA A-ACCUCACC ACCUCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-AC--C |G------CC CU-CA|G-UU CAC-|CCU(U --CAA)AAG- -----(aau- 3181 aa-)------ U-AGUGAACA AAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuaaa- 3781 ---------A UAAAAA-AGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-GU-GG- AA-AGA--AA -UGGGCUACA UU--UUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAA-AAaau- 4021 ---------- ------ACGG --AAUAU-UC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AA-A--AU -A--UAAAG- -GAGGAUUUA 4141 G-A--AGUAA A-AGGAAA(- aaaga-gu-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCA 4261 AUAGAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaauuaaa- 4381 ----u-aaac ua-------- --aau----- ----aaauau a--uaaa-uu uaua------ 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAA-AGG-U AAGUCGUAAC AUGGUAAG-U CUA-CC(GGA 4621 -A)GGU-GG- CCUUGGACAU ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.mar.2 5213 bp RNA RNA 23-JAN-1998 DEFINITION Mitochondrion Desmognathus marmoratus.; . ACCESSION U71226 KEYWORDS . SOURCE Mitochondrion Desmognathus marmoratus. ORGANISM Mitochondrion Desmognathus marmoratus. REFERENCE 1 (bases 1 to 1168) AUTHORS Titus,T.A. and Larson,A. TITLE Molecular phylogenetics of Desmognathine salamanders (Caudata: Plethodontidae): A reevaluation of evolution in ecology, life history, and morphology JOURNAL Syst. Biol. 45, 451-472 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1168) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (19-SEP-1996) Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U71226 BASE COUNT 257 a 121 c 105 g 158 t 4572 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~-------- ---------- ---------- ------)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)~~~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ~~~~~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~~~~ ~~~~~~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------~ ~~~GGC|ccA AAGGGUAGUU -U-aAGa|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- --ugaaauaa aauaga--au u----|uaaa a-uuuaucua -----GUA(G 2341 UUAUA)UACA ------aaca uaaa-aug-u aaa------- ----aucaaa -aAC(-GAAA 2401 -)GU|u---- ----auacua -u-agauc-- ---------- CUu-gaauCC ACUAU-AGCU 2461 G-AGA---AA CAAACUAGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AAC- UUUAAA---- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(uugg)a c------cuu 2701 c-c|--C|GC C-AGAG-CAC UACGAGC(-- -caca--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUCUAUA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(ACACUCC 2821 C--------- ----)CGAUA A-ACCUCACC ACCUCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-AC--C |G------CC CU-CA|G-UU CAC-|CCC(U --CAA)AAG- -----(aau- 3181 aa-)------ U-AGUGAACA AAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuaaa- 3781 ---------A UAAAAA-AGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u agu--)---- ---------- ---------- UAA-AAaau- 4021 ---------- ------ACGG --AAUAU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AA-A--AU -A--UAAAG- -GAGGAUUUA 4141 G-A--AGUAA A-AAGAAA(- aaaga-gu-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCA 4261 AUAGAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaaaucaa- 4381 a---u-aaau ua-------- --aau----- ----aaauau a--uaaa-uu uaua------ 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAA-AGG-U AAGUCGUAAC AUGGUAAG-U CUA-CC(GGA 4621 -A)GGU-GG- CCUUGGACAU ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.monti 5213 bp RNA RNA 23-JAN-1998 DEFINITION Mitochondrion Desmognathus monticola.; . ACCESSION U71239 KEYWORDS . SOURCE Mitochondrion Desmognathus monticola. ORGANISM Mitochondrion Desmognathus monticola. REFERENCE 1 (bases 1 to 1163) AUTHORS Titus,T.A. and Larson,A. TITLE history, and morphology Molecular phylogenetics of Desmognathine salamanders (Caudata: Plethodontidae): A reevaluation of evolution in ecology, life JOURNAL Syst. Biol. 45, 451-472 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1163) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (19-SEP-1996) Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U71239 BASE COUNT 253 a 123 c 105 g 158 t 4574 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~-------- ---------- ---------- ------)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)~~~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ~~~~~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~~~~ ~~~~~~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------~ ~~~GGC|ccA AAGGGUAGUU -U-uAGa|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- --uacaauaa aauaga--au u----|uaaa acuuauuua- -----GUG(A 2341 UUAUA)UACA ------aaca uaaa-aug-u aaa------- ----uccaaa -gAC(-GAAA 2401 -)GU|u---- ----auucua -u-auaau-- ---------- CUu-gaacCU ACUAC-AGUU 2461 A-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AAC- UUUAAA---- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(augg)a u------cuu 2701 c-c|--C|GC C-AGAG-CAC UACGAGC(-- -uaca--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUCUACA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(ACACCCC 2821 C--------- ----)CGAUA A-ACCUCACC AUCUCUUGCC ---------- ---------- 2881 (-------ac ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-AC--C |G------CC CU-CA|G-UU CAC-|CUC(U --UAA)AAG- -----(aac- 3181 aa-)------ U-AGUGAACA AAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaaaa- 3781 ---------A UAAAAA-AGU C-AGGUCAAG G|UGUA|GCA AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAA-AAAAc- 4021 ---------- ------ACGG --AAUAU-CA C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AA-G--AU -A--UAAAG- -GAGGAUUUA 4141 G-A--AGUAA A-AAGAAA(- aaaga-gu-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCA 4261 AUAGAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aagaauaaa- 4381 a---u-aauu ua-------- --aau----- ----aaag-- auauaua-uu uaca------ 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAA-AGG-U AAGUCGUAAC AUGGUAAG-U CUA-CC(GGA 4621 -A)GGU-GG- CCUUGGAUAU ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.och.1 5213 bp RNA RNA 23-JAN-1998 DEFINITION Mitochondrion Desmognathus ochrophaeus.; . ACCESSION U71223 KEYWORDS . SOURCE Mitochondrion Desmognathus ochrophaeus. ORGANISM Mitochondrion Desmognathus ochrophaeus. REFERENCE 1 (bases 1 to 1162) AUTHORS Titus,T.A. and Larson,A. TITLE history, and morphology Molecular phylogenetics of Desmognathine salamanders (Caudata: Plethodontidae): A reevaluation of evolution in ecology, life JOURNAL Syst. Biol. 45, 451-472 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1162) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (19-SEP-1996) Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U71223 BASE COUNT 255 a 117 c 104 g 160 t 4577 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~-------- ---------- ---------- ------)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)~~~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ~~~~~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~~~~ ~~~~~~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------~ ~~~GGC|ccA AAGGGUAGUU -U-uAGg|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- --cacaguaa aauaga--au u----|uaaa a-uuuauuaa -----AUA(G 2341 UUAUA)UAUA ------aaua uaaa-aug-u aaa------- ----uccaaa -aAC(-GAAA 2401 -)GU|u---- ----augcua -u-auauu-- ---------- CUa-gaauCU ACUAA-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AAC- UUUAAA---- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(augg)a c------ucu 2701 c-c|--C|GC C-AGAG-GAC UACGAGC(-- -caca--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUCUACA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(ACACCCC 2821 C--------- ----)CGAUA A-ACCUCACC ACCUCUUGCC ---------- ---------- 2881 (-------ac ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-AC--C |G------CC CU-CA|G-UU CAC-|CUU(U --UAA)AAG- -----(aau- 3181 aa-)------ U-AGUGAACA AAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuaaa- 3781 ---------A UAAAAA-AGU C-AGGUCAAG G|UGUA|GCA AAU------- ---------G 3841 A-A-AU-GG- AA-AGA--AA -UGGGCUACA UU--UUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAA-AAaau- 4021 ---------- ------ACGG --AAUAU-UA U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AN-A--AU -A--UAAAG- -GAGGAUUUA 4141 G-A--AGUAA A-AAGAAA(- aaaga-gu-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCA 4261 AUAGAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--UUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaaacaau- 4381 a---a---uu ua-------- --aau----- ----aaacau a--uaaa-uu uaua------ 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAA-AGG-U AAGUCGUAAC AUGGUAAG-C CUA-CC(GGA 4621 -A)GGU-GG- UCUUGGAUAU ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.och.2 5213 bp RNA RNA 23-JAN-1998 DEFINITION Mitochondrion Desmognathus ochrophaeus.; . ACCESSION U71227 KEYWORDS . SOURCE Mitochondrion Desmognathus ochrophaeus. ORGANISM Mitochondrion Desmognathus ochrophaeus. REFERENCE 1 (bases 1 to 1164) AUTHORS Titus,T.A. and Larson,A. TITLE Plethodontidae): A reevaluation of evolution in ecology, life history, and morphology Molecular phylogenetics of Desmognathine salamanders (Caudata: JOURNAL Syst. Biol. 45, 451-472 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1164) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (19-SEP-1996) Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U71227 BASE COUNT 255 a 115 c 105 g 165 t 4573 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~-------- ---------- ---------- ------)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)~~~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ~~~~~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~~~~ ~~~~~~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------~ ~~~GGC|cuA AAGGGUAGUU -U-uAGa|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- --uauaauaa aauaga--au u----|uaaa a-uuuauuua -----AUA(G 2341 UUAUA)UAUA ------auua uaaa-aug-u aaa------- ----uccaaa -aAC(-GAAA 2401 -)GU|u---- ----auacua -u-acagu-- ---------- CUu-gaauCU ACUAU-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AAC- UUUAAA---- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(ugga)u g-------uu 2701 c-c|--C|GC C-GGAG-CAC UACGAGC(-- -caca--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUCUAUA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(ACACCCC 2821 C--------- ----)CGAUA A-ACCUCACC AUCUCUUGCC ---------- ---------- 2881 (-------ac ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-AC--C |G------CC CU-CA|G-UU UAC-|CUU(U --UAA)AAG- -----(aau- 3181 aa-)------ U-AGUGAACA AAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuuaa- 3781 ---------A UAAAAA-AGU C-AGGUCAAG G|UCUA|GCA AAU------- ---------G 3841 A-G-AU-GG- AA-AGA--AA -UGGGCUACA UU--UUUAA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aua--)---- ---------- ---------- AUA-AAaau- 4021 ---------- ------ACGG --AAUAU-CA U-G(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AA-G--AU -A--UAAAG- -GAGGAUUUA 4141 G-A--AGUAA A-AAGAAA(- aaaga-gu-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCA 4261 AUAGAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--UUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaaauaaa- 4381 a---u-aauu ua-------- --aau----- ----aaaaau a--uaaa-cc uaua------ 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAA-AGG-C AAGUCGUAAC AUGGUAAG-U CUA-CC(GGA 4621 -A)GGU-GG- CCUUGGACAU ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.och.3 5213 bp RNA RNA 23-JAN-1998 DEFINITION Mitochondrion Desmognathus ochrophaeus.; . ACCESSION U71228 KEYWORDS . SOURCE Mitochondrion Desmognathus ochrophaeus. ORGANISM Mitochondrion Desmognathus ochrophaeus. REFERENCE 1 (bases 1 to 1164) AUTHORS Titus,T.A. and Larson,A. TITLE Molecular phylogenetics of Desmognathine salamanders (Caudata: Plethodontidae): A reevaluation of evolution in ecology, life history, and morphology JOURNAL Syst. Biol. 45, 451-472 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1164) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (19-SEP-1996) Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U71228 BASE COUNT 260 a 115 c 101 g 163 t 4574 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~-------- ---------- ---------- ------)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)~~~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ~~~~~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~~~~ ~~~~~~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------~ ~~~GGC|cuA AAGGGUAGUU -U-uAGa|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- --uuuaauaa aauaga--au u----|uaaa a-uuuauuua -----AUA(G 2341 UUAUA)UAUA ------auua uaaa-aug-u aaa------- ----cccaaa -aAC(-GAAA 2401 -)GU|u---- ----auacua -u-auaau-- ---------- CUu-gaacCU ACUAU-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AAC- UUUAAA---- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(cgga)c a-------uu 2701 c-c|--C|GC C-AGAG-CAC UACGAGC(-- -uaca--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUCUACA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(ACACCCC 2821 C--------- ----)CGAUA A-ACCUCACC AUCUCUUGCC ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-AC--C |G------CC C--CA|G-UU UAC-|CUU(U --UAA)AAG- -----(aac- 3181 aa-)------ U-AGUAAACA AAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuuaa- 3781 ---------A UAAAAA-AGU C-AGGUCAAG G|UGUA|GCA AAU------- ---------G 3841 A-G-AU-GG- AA-AGA--AA -UGGGCUACA UU--UUUAA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa ua---)---- ---------- ---------- AUA-AAaau- 4021 ---------- ------ACGG --AAUAU-UA U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AA-G--AU -A--UAAAG- -GAGGAUUUA 4141 G-A--AGUAA A-AAGAAA(- aaaga-gu-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCA 4261 AUAGAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--UUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaaauaaa- 4381 a---u-aauu ua-------- --aau----- ----aaaaau a--uaaa-cu uaua------ 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAA-AGG-C AAGUCGUAAC AUGGUAAG-U CUA-CC(GGA 4621 -A)GGU-GG- CCUUGGACAU ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.qua.1 5213 bp RNA RNA 23-JAN-1998 DEFINITION Mitochondrion Desmognathus quadramaculatus.; . ACCESSION U71225 KEYWORDS . SOURCE Mitochondrion Desmognathus quadramaculatus. ORGANISM Mitochondrion Desmognathus quadramaculatus. REFERENCE 1 (bases 1 to 1164) AUTHORS Titus,T.A. and Larson,A. TITLE history, and morphology Molecular phylogenetics of Desmognathine salamanders (Caudata: Plethodontidae): A reevaluation of evolution in ecology, life JOURNAL Syst. Biol. 45, 451-472 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1164) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (19-SEP-1996) Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U71225 BASE COUNT 256 a 120 c 104 g 158 t 4575 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~-------- ---------- ---------- ------)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)~~~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ~~~~~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~~~~ ~~~~~~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------~ ~~~GGC|ccA AAGGGUAGUU -U-uAGg|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- --ugaaauaa aauaga--au u----|uaaa a-uuuaucua -----GUA(G 2341 UUAUA)UAUA ------aaca uaaa-aug-u aaa------- ----aucaaa -aAC(-GAAA 2401 -)GU|c---- ----auacua -u-auaac-- ---------- CUu-gaauCU ACUAC-AGCU 2461 G-AGA---AA CAAACUAGG( AUUAGAUAC) CCUA-CUAU| -GCUC-AAC- UUUAAA---- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(augg)a c------cuu 2701 c-c|--C|GC C-AGAG-CAC UACGAGC(-- -caca--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUCUACA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(ACACUCC 2821 C--------- ----)CGAUA A-ACCUCACC ACCUCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-AC--C |G------CC CU-CA|G-UU CAC-|CCU(U --CAA)AAG- -----(aau- 3181 aa-)------ U-AGUGAACA AAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuaaa- 3781 ---------A UAAAAA-AGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-GU-GG- AA-AGA--AA -UGGGCUACA UU--UUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ag---)---- ---------- ---------- UAA-AAaau- 4021 ---------- ------ACGG --AAUAU-UC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AA-A--AU -A--UAAAG- -GAGGAUUUA 4141 G-A--AGUAA A-AAGAAA(- aaaga-gu-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCA 4261 AUAGAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaauuaaa- 4381 ----u-aaac ua-------- --aau----- ----aaauau a--uaaa-uu uaua------ 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAA-AGG-U AAGUCGUAAC AUGGUAAG-U CUA-CC(GGA 4621 -A)GGU-GG- CCUUGGAUAU ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.qua.2 5213 bp RNA RNA 23-JAN-1998 DEFINITION Mitochondrion Desmognathus quadramaculatus.; . ACCESSION U71229 KEYWORDS . SOURCE Mitochondrion Desmognathus quadramaculatus. ORGANISM Mitochondrion Desmognathus quadramaculatus. REFERENCE 1 (bases 1 to 1167) AUTHORS Titus,T.A. and Larson,A. TITLE Molecular phylogenetics of Desmognathine salamanders (Caudata: Plethodontidae): A reevaluation of evolution in ecology, life history, and morphology JOURNAL Syst. Biol. 45, 451-472 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1167) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (19-SEP-1996) Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U71229 BASE COUNT 260 a 114 c 101 g 167 t 4571 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~-------- ---------- ---------- ------)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)~~~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ~~~~~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~~~~ ~~~~~~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------~ ~~~GGC|ccA AAGGGUAGUU -U-aAGa|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- --cauaauaa aauaga--au u----|uaaa a-uuuauuua -----AUA(G 2341 UUAUA)UAUA ------aaca uaaa-aug-u aaa------- ----accaaa -aAC(-GAAA 2401 -)GU|u---- ----auacua -u-auauc-- ---------- CUu-gaauCU ACUAU-AGUU 2461 G-AGA---AA CAAACUAGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AAC- UUUAAA---- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(gugg)a c------cuu 2701 c-c|--C|GC C-AGAG-CAC UACGAGC(-- -caca--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUCUACA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(ACAUUCC 2821 C--------- ----)CGAUA A-ACCUCACC AUCUCUAGCU ---------- ---------- 2881 (-------au ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-AC--C |G------UC UU-CA|G-UU UAC-|CUU(C --CAA)AAG- -----(aau- 3181 aa-)------ U-AGUAAACA AAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuaaa- 3781 ---------A UAAAAA-AGU C-AGGUCAAG G|UGCA|GCA AAU------- ---------G 3841 A-A-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au ua---)---- ---------- ---------- UAA-AAaac- 4021 ---------- ------ACGG --AAUAU-UC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AG-A--AU -A--UAAAG- -GAGGAUUUA 4141 G-A--AGUAA A-AAGAAA(- aaaga-gu-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCA 4261 AUAGAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< gaaaaauua- 4381 aa--u-aaau ua-------- --aau----- ----aaauau a--uaaauuu uaua------ 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAA-AGG-U AAGUCGUAAC AUGGUAAG-C CUA-CC(GGA 4621 -A)GGU-GG- UCUUAGAUAU ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.sante 5213 bp RNA RNA 23-JAN-1998 DEFINITION Mitochondrion Desmognathus santeetlah.; . ACCESSION U71236 KEYWORDS . SOURCE Mitochondrion Desmognathus santeetlah. ORGANISM Mitochondrion Desmognathus santeetlah. REFERENCE 1 (bases 1 to 1165) AUTHORS Titus,T.A. and Larson,A. TITLE history, and morphology Molecular phylogenetics of Desmognathine salamanders (Caudata: Plethodontidae): A reevaluation of evolution in ecology, life JOURNAL Syst. Biol. 45, 451-472 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1165) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (19-SEP-1996) Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U71236 BASE COUNT 253 a 117 c 105 g 164 t 4574 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~-------- ---------- ---------- ------)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)~~~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ~~~~~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~~~~ ~~~~~~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------~ ~~~GGC|ccA AAGGGUAGUU -U-uAGa|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- --uauaauaa aauaga--au u----|uaaa auuuauuua- -----GUA(G 2341 UUAUA)UACA ------aaua uaaa-aug-u aaa------- ----cccaaa -gAC(-GAAA 2401 -)GU|u---- ----auacua -u-auauu-- ---------- CUu-gaacCU ACUAU-AGCU 2461 G-AGA---GA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AAC- UUUAAA---- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(augg)a c------ccc 2701 c-c|--C|GC C-AGAG-UAC UACGAGC(-- -uaca--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUCUAUA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(ACACCCC 2821 C--------- ----)CGAUA A-ACCUCACC AUUUCUUGCC ---------- ---------- 2881 (-------ac ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-AC--C |G------CC CU--A|G-UU UAC-|CUU(U --UAA)AAG- -----(aac- 3181 aa-)------ U-AGUGAACA AAA-CAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaaaa- 3781 ---------A UAAAAA-AGU C-AGGUCAAG G|UGUA|GCA AAU------- ---------G 3841 A-A-AU-GG- AA-AGA--AA -UGGGCUACA UU--UUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aa---)---- ---------- ---------- UAA-AAaac- 4021 ---------- ------ACGG --AAUAU-UA U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AA-A--GU -A--UAAAG- -GAGGAUUUA 4141 G-A--AGUAA A-AAGAAA(- aaaga-gu-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCA 4261 AUAGAG-CN- CGCACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaaaauaaa- 4381 g---u-aauu ua-------- --aau----- ----aaacau auauaua-uu uaua------ 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAA-AGG-U AAGUCGUAAC AUGGUAAG-U CUA-CC(GGA 4621 -A)GGU-GG- CCUUGGAUAU ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.welte 5213 bp RNA RNA 23-JAN-1998 DEFINITION Mitochondrion Desmognathus welteri.; . ACCESSION U71231 KEYWORDS . SOURCE Mitochondrion Desmognathus welteri. ORGANISM Mitochondrion Desmognathus welteri. REFERENCE 1 (bases 1 to 1162) AUTHORS Titus,T.A. and Larson,A. TITLE history, and morphology Molecular phylogenetics of Desmognathine salamanders (Caudata: Plethodontidae): A reevaluation of evolution in ecology, life JOURNAL Syst. Biol. 45, 451-472 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1162) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (19-SEP-1996) Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U71231 BASE COUNT 258 a 122 c 102 g 156 t 4575 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~-------- ---------- ---------- ------)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)~~~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ~~~~~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~~~~ ~~~~~~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------~ ~~~GGC|ccA AAGGGUAGUU -U-uAGa|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- --uauaauaa aauaga--au u----|uaaa ac-uuacuua -----GUA(G 2341 UUAUA)UACA ------aaug uaaa-aug-u aaa------- ----cccaaa -aAC(-GAAA 2401 -)GU|u---- ----auacua -u-auaau-- ---------- CUu-gaacCU ACUAU-AGCU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AAC- UUUAAA---- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(augg)a u------auu 2701 c-c|--C|GC C-AGAG-CAC UACGAGC(-- -caca--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUCUACA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(ACACCCC 2821 C--------- ----)CGAUA A-ACCUCACC ACCCCUUGCC ---------- ---------- 2881 (-------ac ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-AC--C |G------CC CU-CA|G-UU CAC-|CUU(U --CAA)AAG- -----(aau- 3181 aa-)------ U-AAUGAACA AAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaaaa- 3781 ---------A UAAAAA-AGU C-AGGUCAAG G|UGUA|GCA AAU------- ---------G 3841 A-G-GU-GG- AA-AGA--AA -UGGGCUACA UU--UUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u aau--)---- ---------- ---------- UAA-AAaau- 4021 ---------- ------ACGA --AGUAU-UA U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AA-A--AU -A--UAAAG- -GAGGAUUUA 4141 G-A--AGUAA A-AAGAAA(- aaaga-gu-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCA 4261 AUAGAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--UUU A--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaa-auaaa- 4381 a---u--auu ua-------- --aau----- ----aaauau a--uaaa-cc uaua------ 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A AAAA-AGG-U AAGUCGUAAC AUGGUAAG-U CUA-CC(GGA 4621 -A)GGU-GG- CCUUGGACAC ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.wrigh 5213 bp RNA RNA 23-JAN-1998 DEFINITION Mitochondrion Desmognathus wrighti.; . ACCESSION U71242 KEYWORDS . SOURCE Mitochondrion Desmognathus wrighti. ORGANISM Mitochondrion Desmognathus wrighti. REFERENCE 1 (bases 1 to 1149) AUTHORS Titus,T.A. and Larson,A. TITLE Molecular phylogenetics of Desmognathine salamanders (Caudata: Plethodontidae): A reevaluation of evolution in ecology, life history, and morphology JOURNAL Syst. Biol. 45, 451-472 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1149) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (19-SEP-1996) Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U71242 BASE COUNT 238 a 115 c 107 g 158 t 4595 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~-------- ---------- ---------- ------)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)~~~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ~~~~~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~~~~ ~~~~~~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------~ ~~~GGC|ccA AAGGGUAGUU -U-uAGa|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- --uguaauaa aauagg--au -----|uaaa auuuuacuu- ----aACA(G 2341 UUAUA)AGUG ------aacg uaaa-gca-u aaa------- ----cccaaa -aAC(-GAAA 2401 -)GU|u---- ----auacua -u-auuuu-- ---------- CUu-gaauCU ACUAC-AGUU 2461 A-AGA---AN CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-AAN- UUUAAA---- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(uugg)a c-------cu 2701 c-u|--C|GC C-AGAG-CAC UACGAGC(-- -caca--)GC UUA--AAACU CAAAGGAC-C 2761 UG|GCGGCG- -CCUACA-UC CAUCUAGA|G GAGCCUGU-U |CUaua--AU CG(ACACCCC 2821 C--------- ----)CGAUA A-ACCUCACC ACCUCUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU CUA-UA|UA- 3121 |CC|-AC--C |G-------C CU-CA|G-UA UAC-|CUU(U --UAA)AAG- -----(aau- 3181 aa-)------ A-AGUGAACG AAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuuaa- 3781 ---------A UAAAAA-AGU C-AGGUCAAG G|UGUA|GCA AAU------- ---------G 3841 A-G-CU-GG- AA-AGA--AA -UGGGCUACA UU--UUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- UAA-AAAAc- 4021 ---------- ------ACGG --AAUAU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AA-A--AU -A--UAAAG- -GAGGAUUUA 4141 G-A--AGUAA A-AAGAAA(- aaaga-gu-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCA 4261 AUAGAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CUC U--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aa-aau---- 4381 ---------- aa-------- uuaagc---- --------uu a-------au uau------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A AAAG-AGG-A AAGUCGUAAC AUGGUAAG-U CUA-CC(GGA 4621 -A)GGU-GG- CCUUGGAUA- ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.E.wilde 5213 bp RNA RNA 23-JAN-1998 DEFINITION Mitochondrion Eurycea wilderae.; . ACCESSION U71232 KEYWORDS . SOURCE Mitochondrion Eurycea wilderae. ORGANISM Mitochondrion Eurycea wilderae. REFERENCE 1 (bases 1 to 1166) AUTHORS Titus,T.A. and Larson,A. TITLE A molecular phylogenetic perspective on the evolutionary radiation of the salamander family Salamandridae JOURNAL Syst. Biol. 44, 125-151 (1995) STANDARD No information REFERENCE 2 (bases 1 to 1166) AUTHORS Titus,T.A. and Larson,A. TITLE Molecular phylogenetics of Desmognathine salamanders (Caudata: Plethodontidae): A reevaluation of evolution in ecology, life history, and morphology JOURNAL Syst. Biol. 45, 451-472 (1997) STANDARD No information REFERENCE 3 (bases 1 to 1166) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (19-SEP-1996) Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U71232 BASE COUNT 241 a 132 c 106 g 158 t 4576 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~-------- ---------- ---------- ------)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)~~~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ~~~~~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~~~~ ~~~~~~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------~ ~~~GGC|ccA AAGAGCAGUU -A-aAGa|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- --aaacaauu aauaaa--au -----|uaaa auauugccca -----GCC(G 2341 UCAUA)CGCA ------uaaa caaa-uaa-u aaa------- ----uucaua -uAC(-AAAA 2401 -)GU|u---- ----auuuua -g-uacc--- ---------- CUu-gaacCC ACUAC-AGUU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AAU- UAUAAA---- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -cu(uugg)a u------aca 2701 c-c|--C|GC C-AGAG-CAC UACGAGC(-- -uuua--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUAUA-CC C-CCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 C--------- ----)CGAUC A-ACCUCACC GUCACUCGCU ---------- ---------- 2881 (-------ag ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-AC--C |G------CC CC-CA|G-CU AAC-|CCU(U --UAA)AGG- -----(agu- 3181 aa-)------ U-AGUCAGCA UAA-UAAA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuaaa- 3781 ---------A UUUAAA-AGU C-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 C-A-AC-GG- GA-AGA--AA -UGGGCUACA UU--UUUUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- -UA-AAaau- 4021 ---------- ------ACGG --AACAA-CC A-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) C-UA-A--AU -G--CAAAG- -GCGGAUUUA 4141 G-A--AGUAA A-AAGAAA(- -aaga-au-- --)UUUCU-U U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -aau-gGGUA 4261 AUAAAA-CA- CGCACACA-C -CGCCCGUCA C-CCU--CAU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaacuauaa- 4381 u---u-ucuu ua-------- --aau----- ----aaau-u auuaaua-gu uga------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-A AAGUCGUAAC AUGGUAAG-C CUA-CC(GGA 4621 -A)GGU-GG- UCUUGGAUAU ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.hubri 5213 bp RNA RNA 23-JAN-1998 DEFINITION Mitochondrion Phaeognathus hubrichti.; . ACCESSION U71243 KEYWORDS . SOURCE Mitochondrion Phaeognathus hubrichti. ORGANISM Mitochondrion Phaeognathus hubrichti. REFERENCE 1 (bases 1 to 1173) AUTHORS Titus,T.A. and Larson,A. TITLE history, and morphology Molecular phylogenetics of Desmognathine salamanders (Caudata: Plethodontidae): A reevaluation of evolution in ecology, life JOURNAL Syst. Biol. 45, 451-472 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1173) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (19-SEP-1996) Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U71243 BASE COUNT 249 a 126 c 103 g 165 t 4570 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~-------- ---------- ---------- ------)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)~~~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ~~~~~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~~~~ ~~~~~~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------~ ~~~GGC|ccA AAGAGUAGUU -U-aAGa|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -uuuaucuaa aauaga--au -----|uaaa aacuuauuu- ----aGCC(G 2341 UCAUA)CGCA ------aaca uaaa-uua-u aaa------- ----accaaa -aAC(-GAAG 2401 -)GU|u---- ----acucua -ucauaua-- ---------- CUu-gaauCU ACUAU-AAUU 2461 G-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AAU- UUUAAA---- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- cuu(uagg)u u------uuc 2701 c-c|--C|GC C-AGAG-UAC UACGAGC(-- -caca--)GC UUA--AAAUU CAAAGAAC-U 2761 UG|GCGGUG- CCCUAUA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(ACACCCC 2821 C--------- ----)CGAUA A-ACCUCACC AUCCCUUGCU ---------- ---------- 2881 (-------au au-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-AC--C |G------UC CU-CA|G-CU UAC-|CUU(U --UAA)AAG- -----(aac- 3181 aa-)------ A-AGUGAACA AAA-UAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuuaa- 3781 ---------A UAAAAA-AGU C-AGGUCAAG G|UGUA|GCA CAU------- ---------G 3841 G-G-AU-GG- AA-AGA--AA -UGGGCUACA UU--UUUUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u ua---)---- ---------- ---------- UAA-AAAAc- 4021 ---------- ------ACGA --AAUAC-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AA-A--GU -A--UGAAG- -GAGGAUUUA 4141 G-A--AGUAA A-AAGAAA(- aaaga-gu-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCA 4261 AUAGAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aauacacaa- 4381 ----u-aaau ua-------- --aau----- -------aaa uaua-uaauu aaaua----- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-U AAGUCGUAAC AUGGUAAG-U CUA-CC(GGA 4621 -A)GGU-GG- CCUUGGACAU ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.yonah 5213 bp RNA RNA 01-MAY-1998 DEFINITION Mitochondrion Plethodon yonahlossee.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. ACCESSION Y10948 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. SOURCE Mitochondrion Plethodon yonahlossee. ORGANISM Mitochondrion Plethodon yonahlossee. REFERENCE 1 (bases 1 to 2479) AUTHORS Feller,A.E. and Hedges,S.B. TITLE Molecular evidence for a Salamander-Caecilian clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2479) AUTHORS Hedges,B. TITLE Direct Submission JOURNAL Submitted (03-FEB-1997) B. Hedges, Pennsylvania State University, Dept. Biology, 208 Mueller Lab., University Park, PA 16802, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y10948 BASE COUNT 323 a 210 c 148 g 191 t 4341 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---AUAGGCU 661 (UAG-)U-CC U|AACCU-UA GUA-UUAACU -G-AAAU-UA |UG-CU--UA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------cuca c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCAGU GAAAA---UG U|CCC-Uuau --uu-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---auua a----)---- 1261 ---------- ---------- --ga--uaa- ---AGAGAAC |--------- cGAUAUCA-- 1321 -GGCgcc--- -----(caua ---------- ---------- ---------- ------)--- 1381 -----|---a GCCCA--uca c|AUCUA-GU --|------- (-caa--)-- -------GC| 1441 CACU------ ---------- ---------- -|-CCUA--( CACA-)--GG AAcu---c-A 1501 GCA|GUA-AU AAACCUUGAG a-uaUAAGC( ---------- gacaa---)G CUCGA-CUC| 1561 A|-ACAA-U- AA-UUAaua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUC|-GGU 1921 -AAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAAA|--- -GAC-CCA-- 1981 AAUUA-AUAC ---------a caCGGC|CAA AAG-GUGGuu -a-aaa-|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------ac auauaac--- ---uga--au -----|uaaa aac-au-acu ---ugGCU(G 2341 UCAUA)CGCa ------aaag uaaacccuaa gcc------- ----caauac -aag-ccuca 2401 --cu-a---- ---------- ---------a ca-------- cuu-gaagCC ACUAU-AAUC 2461 A-AGA---AA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUU-GUU- CUCAAA-c-- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(-cuu)- ---------- 2701 --c|--G|GC C-aGAG-UAC UACGAGC(-- -caca--)GC UUA--AAACU CAAAGAAC-U 2761 UG|GCGGUG- CUCUACA-CC CACCUAGA|G GAGCCUGU-U |CUGUA--AU CG(AUACUCC 2821 C--------- ----)CGAUA A-ACCUCACC ACCUCUGGCC ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-AC--C |G------UC CU-CU|G-CC UAU-|CUU(C --AAA)AGA- -----(auu- 3181 au-)------ A-AGUAAGCA UAA-CAAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- (------)-- ----uuaaa- 3781 ---------A UAAAAA-AGC C-AGGUCAAG G|UGUA|GCA CAU------- ---------G 3841 A-G-GC-GG- AA-AGA--AA -UGGGCUACA UU--UUCUC- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c a-u--)---- ---------- ---------- UAG-AAaac- 4021 ---------- ------ACGU --AAAGU-CC U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) A-AA-A--AA -C--AAAAG- -GAGGAUUUA 4141 G-A--AGUAA A-AAGAAA(- uaaga-au-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACC--AGGC 4261 AUAAAG-CA- CGCACACA-C -CGCCCGUCA C-CCU--CAU U--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< uaaaacaaa- 4381 u--------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-A AAGUCGUAAC AUGGUAAG-C -UA-CC(GGA 4621 -A)GGU-GG- UCUUAGAU-- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.N.virid 5213 bp RNA RNA 23-JAN-1998 DEFINITION Mitochondrion Notophthalmus viridescens.; . ACCESSION U71233 KEYWORDS . SOURCE Mitochondrion Notophthalmus viridescens. ORGANISM Mitochondrion Notophthalmus viridescens. REFERENCE 1 (bases 1 to 1191) AUTHORS Titus,T.A. and Larson,A. TITLE radiation of the salamander family Salamandridae A molecular phylogenetic perspective on the evolutionary JOURNAL Syst. Biol. 44, 125-151 (1995) STANDARD No information REFERENCE 2 (bases 1 to 1191) AUTHORS Titus,T.A. and Larson,A. TITLE Molecular phylogenetics of Desmognathine salamanders (Caudata: Plethodontidae): A reevaluation of evolution in ecology, life history, and morphology JOURNAL Syst. Biol. 45, 451-472 (1997) STANDARD No information REFERENCE 3 (bases 1 to 1191) AUTHORS Titus,T.A. TITLE Direct Submission JOURNAL Submitted (19-SEP-1996) Biology, University of Oregon, Eugene, OR 97403, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U71233 BASE COUNT 248 a 138 c 119 g 140 t 4568 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~~ -~~~-~-~~~ 721 -~~~~----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~-~~~~ --~~-~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~----)---- 1261 ---------- ---------- --~~~~~~~- ~~~~~~~~~~ |--------- ~~~~~~~~-- 1321 -~~~~~~~~~ ~~~~~(~~~~ ~~-------- ---------- ---------- ------)~~~ 1381 ~~~~~|---~ ~~~~~--~~~ ~|~~~~~-~~ --|~~~~~~~ (-~~~--)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|-~~~~--( ~~~~-)~~~~ ~~~~---~-~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~--~~~~~~( ---------- ~~~~~~~~)~ ~~~~~-~~~| 1561 ~|-~~~~-~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~~~~ ~~~~~~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------~ ~~~GGC|ucA AAGGGUGGUU -A-aAGa|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u -acauacaca aauaga--ac -----|uaaa aacuaacuac -----GCU(G 2341 UCGCA)CGCA ------auag uuuu-aa--a aaa------- ----uacagu -uUC(-GAAA 2401 -)GU|a---- ----guucua -c-uaaacaa a--------- CUu-gaacCC ACGAC-AGCU 2461 A-GGA---CC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AAC- CAUAAA---- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -cu(uuga)u u-------ua 2701 u-c|--C|GC C-AGAG-UAC UACGAGC(-- -aaca--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUCUAUA-CC CCCCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUA A-ACCUCACC AUCUAUUGCU ---------- ---------- 2881 (-------aa ua-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-AC--C |G------UC ---CA|G-CC CAC-|CCU(U --UAA)AGG- -----(aua- 3181 ga-)------ C-AGUAGGCA CAA-UUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aaac- 3781 ---------A UAAAAA-CGU C-AGGUCAAG G|UGUA|GCA UAU------- ---------G 3841 A-G-AU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a cc---)---- ---------- ---------- UAG-AAaac- 4021 ---------- ------ACGG --AAAAG-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) U-AA-G-ACU -A--UAAAG- -GAGGAUUUA 4141 G-C--AGUAA A-AAGAAA(- aaaga-gu-- --)GUUCUUU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GCC--GGCA 4261 AUGGAG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaauaauaa- 4381 u--aa-aaua ua-------- --aau----- ----aaac-- aaaaaccaaa gaga------ 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC AUGGUAAG-U CUA-CC(GGA 4621 -A)GGU-GA- ACUUGGAACA U--------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.inter 5213 bp RNA RNA 01-MAY-1998 DEFINITION Mitochondrion Siren intermedia.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. ACCESSION Y10946 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. SOURCE Mitochondrion Siren intermedia. ORGANISM Mitochondrion Siren intermedia. REFERENCE 1 (bases 1 to 2615) AUTHORS Feller,A.E. and Hedges,S.B. TITLE Molecular evidence for a Salamander-Caecilian clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2615) AUTHORS Hedges,B. TITLE Direct Submission JOURNAL Submitted (03-FEB-1997) B. Hedges, Pennsylvania State University, Dept. Biology, 208 Mueller Lab., University Park, PA 16802, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y10946 BASE COUNT 334 a 209 c 173 g 220 t 4277 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---AAAGGCU 661 (UGG-)U-CC U|AACCU-UA CUA-UUAAUU -U-UAAC-UA |UA-CU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCCCCUGU GAAAA---UG C|CCU-Accu --ua-cc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--uuuaa g----)---- 1261 ---------- ---------- --ua--aaa- ---AAGGAGC |--------- uGAUAUCA-- 1321 -GGCAC---- -----(u-ua a--------- ---------- ---------- ------)--- 1381 ----a|---a GCCCA--UGA C|AUCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAAG-)--GG AAcau--C-A 1501 GCA|GUG-AU AAAUAUUGGU a-aaUAAGC( ---------- ga-u-aaa)G CUUGA-ACC| 1561 A|-GUAA-U- AG-UUAaua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCU|-GGU 1921 -UAA-U---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAGA|--- -AGC-CCA-- 1981 AAUUA-AUAA ---------u auCGGC|UCA AAGGGUGGUU -A-ga--|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------guau auugacuaaa gauaag--gu -----|uaaa ggu-aa-auu ---aaGCC(G 2341 UCGCA)CGCa a------aaa uuu--auuau aaa------- ----accuca -aAC(-GAAA 2401 -)GU|u---- ----accuua aaauaaaauu aa-------- cuu-gaauCC ACGAC-AUCU 2461 G-GGG---CA CAAACUAGG( AUUAGAUAC) CCUA-CUAU| -GCCC-AGA- CAUAAA-cuu 2521 u--ga----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ----uaau-- ---------- 2701 u-c|--C|GC C-aGAG-CAC UACGAGC(-- -aaua--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUCCACA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUACUCC 2821 C--------- ----)CGAUU C-ACCUCACC AUCUUUUGCU ---------- ---------- 2881 (-------au uc-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---CGC CUA-UA|UA- 3121 |CC|-AC--C |G------UC GU-CA|G-CU UAC-|CCU(U --UAA)AGG- -----(aaa- 3181 aa-)------ U-AGUAAGCA UAA-UGGC-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- (------)-- -----acac- 3781 ---------G CCAAAA-CGU C-AGGUCAAG G|UGUA|GCG UAU------- ---------A 3841 A-G-AU-GG- GU-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a auu--)---- ---------- ---------- AAG-AAaac- 4021 ---------- -----uACGA --AAGAU-CU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA--u-) U-AG-G--AU -C--CAAAG- -GUGGAUUUA 4141 G-C--AGUAA A-AAGAAA(- caaga-gc-- --)GUUCUAU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCC 4261 CUGGGG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CAU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< agauaaaca- 4381 a---c-caau cuua------ --aua----- ----aaacaa aacccaaaaa a--------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-A AAGUCGUAAC AUGGUAAG-U CUA-CC(GGA 4621 -A)GGU-GA- ACUUGGAAUA A--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.I.banna 5213 bp RNA RNA 01-MAY-1998 DEFINITION Mitochondrion Ichthyophis bannanicus.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. ACCESSION Y10949 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. SOURCE Mitochondrion Ichthyophis bannanicus. ORGANISM Mitochondrion Ichthyophis bannanicus. REFERENCE 1 (bases 1 to 2588) AUTHORS Feller,A.E. and Hedges,S.B. TITLE Molecular evidence for a Salamander-Caecilian clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2588) AUTHORS Hedges,B. TITLE Direct Submission JOURNAL Submitted (03-FEB-1997) B. Hedges, Pennsylvania State University, Dept. Biology, 208 Mueller Lab., University Park, PA 16802, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y10949 BASE COUNT 347 a 232 c 168 g 190 t 4276 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---AAAAGUU 661 (UUG-)U-CC C|AGCUU-UA AAG-UCAACU -A-UGAC-CU |AU-AU--UA -UAC-A-UGC 721 -AAG------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAAACCAGU GAGAA---AG C|CA------ ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------- -----)---- 1261 ---------- ---------- ------aua- ---AAUGAGC |--------- uGAUAUCA-- 1321 -GGCACa--- -----(agaa -agu------ ---------- ---------- ------)--- 1381 ----u|---a GCCAA--uaa c|AUCUA-GC --|------- (-uaa--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( -aag-)--GG CAaa---C-A 1501 GCA|GUG-AU AAACAUUAGU a-aaUGAGC( ---------- -acacaau)G CUCGA-ACU| 1561 A|-GACA-C- GG-CCAaaaa ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUC|-GGC 1921 -CAA-U---C UCGU-G(-CC AGCCGCC-GC -GGU-UA)-U ACGAGA|--- -GAC-CCG-- 1981 AGUUG-ACAA C--------a guCGGC|GUA AAGUGUGA-c -a-aag-|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------aaau gagccuauaa cauaag--ac -----|ugaa acc-cg-acc ---uaACU(G 2341 UCAUA)CGUa ca------ag ucagugguaa acc------- ----caauua -cAC(-AAAA 2401 -)GU|a---- ----gucuua acuaaaa-ga ccu------- uuc-acccUC ACAAC-CGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- UACAAA-cug 2521 aa-ga----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- --------cc uua(aaac)c -----cacuu 2701 u-c|--C|GC C-aGAA-CAC UACGAGU(-- -aaac--)AC UUA--AAAGU CAAAGGAC-U 2761 UG|CCGGUG- CCCCAAA-UC CACCCAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGCUA A-ACCUCACC ACUCUUUGCC ---------- ---------- 2881 (-------aa aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-AC--C |G------UC UG-CA|G-CU CAC-|CCC(a u-uga)AGG- -----(aaa- 3181 au-)------ A-AGUGAGCA GAA-UGAA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- (------)-- -----cuua- 3781 ---------C UAAAAA-CGU C-AGGUCAAG G|UGUA|GCA CAU------- ---------A 3841 G-A-GU-GG- AA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a c-u--)---- ---------- ---------- AAG-AAcaa- 4021 ---------- ------ACGA --GAAAG-CA A-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) A-AU-U--CU -U--GGAAG- -GCGGAUUUG 4141 G-C--UGUAA A-AAGAAA(- -uaau-ua-- --)-UAUUCU U-UUU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- caaca-cagc 4261 ccuuag-CGc UGCACACA-C -CGCCCGUCA C-CCU--CAU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aacuuaacu- 4381 cacuc-caac uu-------- --aau----- --------aa acaca---ua aacauauaau 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-A AAGUCGUAAC ACGGUAAG-C GUA-CU(GGA 4621 -A)AGU-GC- UCUUGGAAU- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.Epic.sp 5213 bp RNA RNA 01-MAY-1998 DEFINITION Mitochondrion Epicrionops sp.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. ACCESSION Y10950 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. SOURCE Mitochondrion Epicrionops sp. ORGANISM Mitochondrion Epicrionops sp. REFERENCE 1 (bases 1 to 2680) AUTHORS Feller,A.E. and Hedges,S.B. TITLE Molecular evidence for a Salamander-Caecilian clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2680) AUTHORS Hedges,B. TITLE Direct Submission JOURNAL Submitted (03-FEB-1997) B. Hedges, Pennsylvania State University, Dept. Biology, 208 Mueller Lab., University Park, PA 16802, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y10950 BASE COUNT 308 a 261 c 186 g 196 t 4262 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---AAAAGCU 661 (UGG-)U-CC U|GACUU-UA ACA-CCAACU -G-CAGC-UC |AC-AU--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------auc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCCGCCAGU GAAAA---UG C|CCA-U-au --aa-gc--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(--cacac a----)---- 1261 ---------- ---------- --ga--aua- --uAAGGAGC |--------- cGAUAUCA-- 1321 -GGCACa--- -----(acaa -uu------- ---------- ---------- ------)--- 1381 ----u|---a GCCAG--aga c|GUCUU-GC --|------- (-uca--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( UAAG-)--GG CCua---C-A 1501 GCA|GUG-AU AAACAUUGAA a-guAUGAG( ---------- cacuaaag)C UCGAC-CUC| 1561 A|-GCUA-C- AG-CUAcua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGCC|-GGU 1921 -CAA-C---C UCGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGAAG|--- -GAC-CCA-- 1981 AGCUG-GUGC A-------ac uaCGGC|GUA AAGAGUGA-C ---uag-|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ----cacaau aacucuucaa cuuaag--gu -----|uaag ccc-ug-acu ---uaGCC(G 2341 UUAUA)CGCu u------uag ucgg-ccaca aac------- ----ccauua -uAC(-GAAA 2401 -)GC|a---- ----gccuua agcccaa-ga ugcc------ cuc-aaugUC ACGAC-CACC 2461 G-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCUC-AGU- CCCAAA-ccu 2521 u--ua----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(aaau)a na-n-annnn 2701 n-u|--C|GC C-aGGG-UAC UACGAGC(-- -aaca--)GC UUG--AAACC CAAAGGAC-U 2761 UG|GCGGUG- UCCCAAA-UC CACUCAGA|G GAGCCUGU-U |CUGUA--AU CG(AUACCCC 2821 C--------- ----)CGCUA A-ACCUCACC UUCCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC CUA-UA|UA- 3121 |CC|-AC--C |G----ucau gu-CA|G-CC UAC-|CUU(g u-gga)AAG- -----(aua- 3181 uaa)------ C-AGUAAGCA AAA-UGAA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- (------)-- -----uc-c- 3781 ---------A UCCAUA-CGU C-AGGUCAAG G|UGUA|GCA CAU------- ---------G 3841 G-G-AC-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a -ua--)---- ---------- ---------- AAG-AAuaa- 4021 ---------- -----cACGG --AUAAG-CU A-A(------ ---------- ---------- 4081 ---------- ---------a UGAAA----) A-CA-A--CU -U--UGAAG- -GCGGAUUUG 4141 A-C--AGUAA A-AAGAAA(- cauuu-ac-- --)AUUCUCU U-UAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ACC--GGCC 4261 CUGGGG-GG- CGCACACA-C -CGCCCGUCA C-CCU--CAU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aaacacgcau 4381 uuuua-aacu accc------ -uannnn--- --------nc cuaaagnacc cacccg---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-U AAGUCGUAAC AUGGUAAG-C ACA-CC(GGA 4621 -A)GUC-GU- CUUGGAAUUU A--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.natan 5213 bp RNA RNA 01-MAY-1998 DEFINITION Mitochondrion Typhlonectes natans.; 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. ACCESSION Y10951 KEYWORDS 12S ribosomal RNA; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; transfer RNA-Leu(UUR); transfer RNA-Val; tRNA-Leu gene; tRNA-Val gene. SOURCE Mitochondrion Typhlonectes natans. ORGANISM Mitochondrion Typhlonectes natans. REFERENCE 1 (bases 1 to 2593) AUTHORS Feller,A.E. and Hedges,S.B. TITLE Molecular evidence for a Salamander-Caecilian clade JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2593) AUTHORS Hedges,B. TITLE Direct Submission JOURNAL Submitted (03-FEB-1997) B. Hedges, Pennsylvania State University, Dept. Biology, 208 Mueller Lab., University Park, PA 16802, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y10951 BASE COUNT 331 a 240 c 168 g 190 t 4284 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---AAAAGUU 661 (UAG-)U-CC U|AACUU-UA AUA-UCAAUU -A-UAGC-UA |GC-CC--UA -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCCAACCAGU GACAA---CG C|CCG-Gu-- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(----aca g----)---- 1261 ---------- ---------- ---c--cca- --cCAGGAGC |--------- cGAUCUCA-- 1321 -GGCaca--- -----(aaaa -u-------- ---------- ---------- ------)--- 1381 ----u|---a GCCCA--CAA C|AUCUA-G- --|------- (-aau--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAGC-)--GG GCcag--a-G 1501 GCA|GUG-AC UAACAUUGA- c-uaAUAAG( ---------- --ugaaaa)C UUGAA-CUC| 1561 A|-GCCA-U- AG-CUAaua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGU 1921 -AAA-U---C UUGU-G(-CC AGCCACC-GC -GGU-UA)-G ACAAGA|--- -AAC-UCA-- 1981 AAUUG-AUAU A--------c uaCGGC|AAA AAGUGUGAU- -A-aag-|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------aa gacucaaacc acuaag--au -----|uaaa aac-uu-ucu ---ugGCC(G 2341 UAAAA)CGCu ------ucag aaa-aguaac acac------ ----acaauc -aUC(-GAAA 2401 -)GU|a---- ----accuua aacccau-ga a-aau----- ucu-gacaUC ACGAC-UGCU 2461 A-AGA---CA CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GCCU-AGC- UGUAAA-ccu 2521 c--ga----- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(ccac)c -------uag 2701 u-c|--C|GC C-aGAG-CAC UACGAGC(-- -agca--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CCCNAAA-CC UACUUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAACCC 2821 A--------- ----)CGUUA A-ACCUCACC AUCUUUUGAU ---------- ---------- 2881 (-------cc uc-a------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- --------GC CUA-UA|UA- 3121 |CC|-AC--C |G------UC GC-CA|G-CU AGC-|CUU(U --UAA)AAG- -----(aaa- 3181 ua-)------ A-AACUAGCC AAA-CAGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- (------)-- ----acagc- 3781 ---------C CAAAUA-CGU C-AGGUCAAG G|UGUA|GCA cau------- ---------A 3841 A-G-AU-GG- -A-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uua--)---- ---------- ---------- AAG-AA-ac- 4021 ---------- ------ACGG --AAAGU-CU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) A-CA-A--CU -C--CAAAG- -ACGGAUUUA 4141 A-C--AGUAA G-CGGGAC(- caauu-au-- --)AUCCCUC U-UGA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- aacc--ggcc 4261 cUGGAG-CG- CGCACACA-C -CGCCCGUCA C-CCU--CUU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< uacaaaaau- 4381 u-caa-ccaa uu-------- -uuaua---- --------aa cacacaauua acacaa---- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAG-AGG-C AAGUCGUAAC A-GUGGUG-N AGA-CC(GGA 4621 -A)GGU-GU- GCUUGGAAU- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (9)-Echino 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.A.pecti 5213 bp RNA RNA 29-JUL-1994 DEFINITION Mitochondrion Asterina pectinifera.; 12S ribosomal RNA; 16S ribosomal RNA; ATPase 6; ATPase 8; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; cytochrome b; cytochrome oxidase subunit 1; genome; mitochondrial DNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. ACCESSION D16387 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; ATPase 6; ATPase 8; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; cytochrome b; cytochrome oxidase subunit 1; genome; mitochondrial DNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. SOURCE Mitochondrion Asterina pectinifera. ORGANISM Mitochondrion Asterina pectinifera. REFERENCE 1 (sites) AUTHORS Himeno,H., Masaki,H., Kawai,T., Ohta,T., Kumagai,I., Miura,K.-i. and Watanabe,K. TITLE Unusual genetic codes and a novel gene structure for tRNA (Ser AGY) in starfish mitochondrial DNA JOURNAL Gene 56, 219-230 (1987) STANDARD No information REFERENCE 2 (sites) AUTHORS Jacobs,H.T., Asakawa,S., Araki,T., Miura,K.-i., Smith,M.J. and Watanabe,K. TITLE Conserved tRNA gene cluster in starfish mitochondrial DNA JOURNAL Curr. Genet. 15, 193-206 (1989) STANDARD No information REFERENCE 3 (bases 1 to 16260) AUTHORS Asakawa,S., Himeno,H., Miura,K.-i. and Watanabe,K. TITLE Nucleotide sequence and gene organization of the starfish Asterna pectinifera mitochondrial genome JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: D16387 Submitted (08-JUN-1993) to DDBJ by: Shuichi Asakawa Department of Industrial Chemistry Faculty of Engineering University of Tokyo 7-3-1 Hongo, Bunkyo-ku Tokyo 113 Japan Phone: 03-3812-2111 x7217 Fax: 03-5800-6951. NCBI gi: 517153 BASE COUNT 345 a 220 c 168 g 217 t 4263 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -cuuuucuua gcaacCGAUU 661 (UGG-)U-CC U|AGUCC-UA UUC-UUAAUU -A-UUUC-UA |GG-AU--GA -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -----aaaaa -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gcAAAACAGU GAGuua-aca c|agg-c--- --cc------ ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(gccccca ga---)---- 1261 ---------- ---------- --gga-aau- u-agccuuaa |c----aa-- cAGCAUCA-- 1321 -GG-AC---- -----(uaaa ccuuuagac- ---------- ---------- ------)--- 1381 -----|---- ACCUA--AGA C|GCUaa-ga ---------- -accua---- -------ua| 1441 CACC------ ---------- ---------- -|-------- -cca-----c cc-----c-u 1501 GCA|GUA-CU CAACAUUGUA C-AAUAAGC( ---------- ----AAUA)G CUUGA-UAC| 1561 A|-GCCA-U- AG-AAA---a ga-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- UUACC|-GGU 1921 -AAA-U---U AUGU-G(-CC AGCCACC-GC -GGU-UA)-U ACAUAA|--- -GGU-CCU-- 1981 AGUUA-AGAA U--------u agCGGU|aaA AAGGugauaa ---aac---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -------caa accugg--gg a----|caac acuaac-ucu ----aGCA(G 2341 UAAUA)AGCU UA-------c agaa-cacu- uag------- ----aacaac -aaa(-aaca 2401 -)uu|aa--- ----ccccag -------cu- -------uuu aua-gaccau caCUA-AAGC 2461 U-CAA--AAA UAAACUGGG( AUUAGAUAC) CCCA-CUAU| -AUGA-GCC- guaa------ 2521 ---------- |--|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(aaac)- -------cac 2701 a-a|--C|AC C-uGAG-AAC UACAAAC(-- -UAAA--)GU UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUU- UUUUAGA-CC UUCCUGGA|G GAGCUUGC-C |AUCUA--AC CG(AUAACCC 2821 A--------- ----)CGAAA U-ACCUCACC AGCCUUUGAA ---------- ---------- 2881 (---c---au a--)------ ------(--- --)----<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->-------- ---C---AAC CUG-UA|UA- 3121 |CC|-AU--C |G------UC GU-CA|G-UC UAC-|CCC(c --caa)GGG- -----(---- 3181 ---)------ a-aGUAUACU UAA-AGAA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --gaaauua- 3781 ---------U UCAUUA-CGU U-AGAUCGAG G|UGCA|GUU AAU------- ---------A 3841 G-G-CU-GG- GG-AUG--AG -UGAGCUACA AC--acuau- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a cca-a)---- ---------- ---------- auc-aaaaac 4021 acaac----- -----uGUGG --ACAAU-CC C-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAg---) A-GG-G--AC -U--UUAAA- -CAGGAUUCA 4141 G-C--AGUAA U-GUUUAA(- -caga-aa-- --)AUAAACA U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- -----gcccg ucuA--AGCU 4261 CUAAAA-UG- CGCACACA-U -CGCCCGUCA C-UCU--CGU C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -------ca- 4381 ua-------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAGG-AGA-A AAGUCGUAAC AAAGUAGG-C GUA-UU(GGA 4621 -A)AAU-GC- GCCUGgcaca aau------| auuuuuguag uugaaggaca acaguagcuu 4681 uucacgcuuc a~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.F.serra 5213 bp RNA RNA 19-MAR-1998 DEFINITION Mitochondrion Florometra serratissima.; . ACCESSION AF049132 KEYWORDS . SOURCE Mitochondrion Florometra serratissima. ORGANISM Mitochondrion Florometra serratissima. REFERENCE 1 (bases 1 to 16005) AUTHORS Scouras,A. and Smith,M.J. TITLE serratissima The complete mitochondrial genome of the crinoid Florometra JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 16005) AUTHORS Scouras,A. and Smith,M.J. TITLE Direct Submission JOURNAL Submitted (17-FEB-1998) Biological Sciences, Simon Fraser University, 8888 University Blvd., Burnaby, BC V5A 1S6, Canada STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF049132 BASE COUNT 390 a 133 c 114 g 217 t 4359 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- gcagaAAACU 661 (UGG-)U-CC C|AAUUU-CC CUU-ACUUUU -U-UAUC-UA |UA-AU--GA -UAC-A-UGC 721 -AAAga---- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------aau a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|u cuUCUCCAGC GGAAAA-aua u|aaaaguu- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-uaaa-- -----)---- 1261 ---------- ---------- ---aacuua- auuaaaa-ua |aaauaa--- aGAAAUCC-- 1321 ---------- -----(ucuu ---------- ---------- ---------- ------)--- 1381 -----|---- -------auu c|uuuaa-a- --|------u (auaua-)au -------uC| 1441 CACA------ ---------- ---------- -|-------( -aca-)---- ---------- 1501 GCA|GUA-CU AAAUAUUAAG C-AAUUAGU( ---------- ----AAAA)A CUAGA-CUU| 1561 A|-AUAA-U- AG-AAA---u aaa------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- UAUUG|--GU 1921 aAAA-A---U ACGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGUAA|--- --AA-UAU-A 1981 AAAAG-UAAa gaa--a--ca uucuua|gug aaaaauaa-- ---uuu---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ----aauuaa agugua--uu -----|aaaa auaaaa-uuc ----AACA(G 2341 UCAAA)UGUa ua-------a aauaaaauaa aau------- ---------a -aau(-uac- 2401 -)aa|a---- ----aguaaa a---cacuaa ---------- aaa-aaauuc acGUA-AGUU 2461 U-AA---aaa cAAACCAGG( AUUAGAAAC) CCUG-CUAU| -GUUA-AAC- ca-------- 2521 ---------- |--|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaac)c ---------- 2701 ---|--u|aa a-AAAG-AAC UACGAGC(-- --caa-a)GC UUA--AAACU UAAAGGAC-U 2761 UG|GCGGUU- UUUUAGA-UC UCUCUAGA|G GAGCCUGC-U |AUAUA--AU CG(AUAAUCC 2821 A--------- ----)CGAAA A-ACCUUACC UUUUCUAGAA ---------- ---------- 2881 (-------aa u--)------ ------(--- --)----<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->-------- ---C---AGC UUG-UA|UA- 3121 |UC|-AU--C |A------UC GU-CA|G-CU CAC-|cuu(a a-uaa)aag- -----(a--- 3181 ---)------ --aGUAAGCU AAA-AAGA-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ------aac- 3781 ---------U CAAAAA-CGU U-AGAUCAAG A|UGCA|GCC AAU------- ---------G 3841 A-A-AA-GA- GAaAUA--AG -UGGGCUACA AU--acu--- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- caa--)---- ---------- ---------- --a-acgaau 4021 a--------- ------GCGA --AAuuu-ua a-a(------ ---------- ---------- 4081 ---------- ---------- --uuca-ua) a-aa-u--aa -a--AGAAG- -AAGGAUUUA 4141 G-U--AGUAA G-Aaaagu(- aaaua-aa-- --)aauacUC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AAA--AGCU 4261 CUAAAA-CA- CGUACACA-C -CGCCCGUCA C-UCU--CUU UA-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< -----acu-- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A AAAG-AGA-A AAGUCGUAAC AAGGUAAG-A GUA-GG(GGA 4621 -A)CCU-GC- UCUUGGAAGU U--------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.lix.1 5213 bp RNA RNA 19-JUL-1996 DEFINITION Mitochondrion Arbacia lixula.; 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; cytochrome b; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; D-loop region; F-0-ATPase subunit 6; F-0-ATPase subunit 8; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; tRNA-Ala gene; tRNA-Arg gene; tRNA-Asn gene; tRNA-Asp gene; tRNA-Cys gene; tRNA-Gln gene; tRNA-Glu gene; tRNA-Gly gene; tRNA-His gene; tRNA-Ile gene; tRNA-Leu gene; tRNA-Lys gene; tRNA-Met gene; tRNA-Phe gene; tRNA-Pro gene; tRNA-Ser gene; tRNA-Thr gene; tRNA-Trp gene; tRNA-Tyr gene; tRNA-Val gene. ACCESSION X80396 KEYWORDS 12S rRNA gene; 16S ribosomal RNA; 16S rRNA gene; cytochrome b; cytochrome c oxidase subunit I; cytochrome c oxidase subunit II; cytochrome c oxidase subunit III; D-loop region; F-0-ATPase subunit 6; F-0-ATPase subunit 8; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; tRNA-Ala gene; tRNA-Arg gene; tRNA-Asn gene; tRNA-Asp gene; tRNA-Cys gene; tRNA-Gln gene; tRNA-Glu gene; tRNA-Gly gene; tRNA-His gene; tRNA-Ile gene; tRNA-Leu gene; tRNA-Lys gene; tRNA-Met gene; tRNA-Phe gene; tRNA-Pro gene; tRNA-Ser gene; tRNA-Thr gene; tRNA-Trp gene; tRNA-Tyr gene; tRNA-Val gene. SOURCE Mitochondrion Arbacia lixula. ORGANISM Mitochondrion Arbacia lixula. REFERENCE 1 (bases 1 to 15719) AUTHORS De Giorgi,C., Martiradonna,A., Lanave,C. and Saccone,C. TITLE Complete sequence of the mitochondriac DNA in the sea urchin arbacialixula: conserved features of the echinoid mitochonfrial genome JOURNAL Mol. Phylogenet. Evol. 5, 323-332 (1996) STANDARD No information REFERENCE 2 (bases 1 to 15719) AUTHORS De Giorgi,C. TITLE Direct Submission JOURNAL Submitted (28-JUL-1994) C. De Giorgi, Nodo Nazionale Italiano, (Area di ricerca CNR-Bari), Via Amendola 168/5, 70126 Bari, ITALY STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X80396 BASE COUNT 301 a 192 c 184 g 209 t 4327 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---gcCGAUU 661 (UGG-)U-CC U|AGUCC-CA GUU-UUGGCU -U-UUUU-CG |AA-AU--GC -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -----uaaac a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCAAUCCAGU GAAGUUuaac g-cuuauac- --ac-u---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------u cu-uuccaua -cuaaa---- 1261 ---------- ---------- ---a--aca- g-aaagg-ua |uauucuuu- UAGCAUCA-- 1321 -GG-ACuaa- -----(uuua ---------- ---------- ---------- ------)--- 1381 ---ga|---u GCCCA--CGA C|GCUAA-GC --|------- (-aaaa-)-- -------GC| 1441 CACG------ ---------- ---------- -|-------( -acu-)---- ---------- 1501 GCA|GUG-CU AAACAUUGGA C-cau-acg( ---------- ---UACCG)c uCGGA-UCC| 1561 A|-GUAA-A- CG-AAA---a caaag----- ---------- (--------- ---------- 1621 --------)- ---------- ----|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- AAGGA|-GGU 1921 -AAA-A---U ACGU-G(-CC AGCCACC-GC -GGU-UA)-A ACGUAU|--- -GCC-CUA-A 1981 AGUAA-AACU aga--c---- --CGGU|GUA AAGGGUGGUU -A-gaa---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ---uguuaca gccuag--cu -----|auag uuuuua-uga u---AGUG(G 2341 UAGAA)AACU UA-------c cuaa-aauaa aau------- ---------- ---------- 2401 ----|----- ----agcuag ----ccuaua c--------- uuu-ga-CCC ACGAA-AACU 2461 A-GG----CA UAAACCAGG( AUUAGAUAC) CCUG-UUAU| -ACCU-AGA- agua------ 2521 ---------- |--|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(caac)c u------aua 2701 a-a|--C|AC C-AGAG-AAC UACUAAC(-- uuaag--)GU UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUU- UUCCAAA-CC UCCCUGGA|G GAGCUUGC-C |GUCGG--AU CG(AUAAUCC 2821 A--------- ----)CGCUA U-ACCUUACC GAUUCUUGCC ---------- ---------- 2881 (-------uu ca-)------ ------(--- --)----<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->-------- ---C---AGC CUG-UA|UA- 3121 |CC|-AU--C |G------UC GA-AA|G-UU UAC-|uuc(c --uaa)gaa- -----(---- 3181 ---)------ --aGUUAACA CAA-AGAG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----caau- 3781 ---------C UCUUCA-CGU C-AGAUCAAG G|UGCA|GCU UAU------- ---------G 3841 A-A-UC-GG- GG-ACA--GG -UGAGCUACA AU--GUU--- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(aau aaa--)---- ---------- ---------- --A-ACca-- 4021 ---------- ------GUGA --AAUAA-GG G-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAa-ua) G-UC-C--UU -A--AGAAA- -UUGGAUUCA 4141 G-C--AGUAA G-CCCCAG(- -aaga-ga-- --)AUGGGGC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GAA--AGCU 4261 CUGGAA-UG- CGUACACA-U -CGCCCGUCA C-UCU--CGC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< agcc-aaa-- 4381 --g-g-ua-- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGA-A AAGUCGUAAC AUAGUAGG-U AUA-CC(GGA 4621 -A)GGU-GC- ACCUGGAAAA U--------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.lix.2 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Arbacia lixula. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Arbacia lixula. ORGANISM Mitochondrion Arbacia lixula. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M74840,X53726 DEFINITION Arbacia lixula mitochondrion transfer RNAs-Glu, -Thr, -Pro, -Gln, -Asn, -Leu, -Ala, -Trp, -Cys, -f-Met, -Val, -Asp, -Tyr, and -Gly, 12S ribosomal RNA and ND1 protein gene, 5' end. SOURCE Mitochondrion Arbacia lixula (chromosome Mitochondrion Arbacia lixula) DNA. ORGANISM Mitochondrion Arbacia lixula Eukaryota; Animalia; Eumetazoa; Echinodermata; Echinozoa; Echinoidea; Echinacea; Arbacioida; Arbaciidae. REFERENCE 1 (bases 1 to 2280) AUTHORS De Giorgi,C., Lanave,C., Musci,M.D. and Saccone,C. TITLE Mitochondrial DNA in the sea urchin Arbacia lixula: Evolutionary inferences from nucleotide sequence analysis JOURNAL Mol. Biol. Evol. 8, 515-529 (1991) FEATURES Location/Qualifiers rRNA 1..662 /product="12S ribosomal RNA" /gene="12S rRNA" tRNA 663..729 /product="transfer RNA-Glu" /gene="Glu-tRNA" tRNA 733..803 /product="transfer RNA-Thr" /gene="Thr-tRNA" tRNA 940..1009 /product="transfer RNA-Pro" /gene="Pro-tRNA" tRNA complement(1019..1089) /product="transfer RNA-Gln" /gene="Gln-tRNA" tRNA 1090..1163 /product="transfer RNA-Asn" /gene="Asn-tRNA" tRNA 1164..1235 /product="transfer RNA-Leu" /gene="Leu-tRNA" tRNA complement(1235..1302) /product="transfer RNA-Ala" /gene="Ala-tRNA" tRNA 1303..1373 /product="transfer RNA-Trp" /gene="Trp-tRNA" tRNA 1373..1441 /product="transfer RNA-Cys" /gene="Cys-tRNA" tRNA complement(1441..1512) /product="transfer RNA-Val" /gene="Val-tRNA" tRNA 1527..1600 /product="transfer RNA-fMet" /gene="fMet-tRNA" tRNA complement(1603..1672) /product="transfer RNA-Asp" /gene="Asp-tRNA" tRNA 1689..1759 /product="transfer RNA-Tyr" /gene="Tyr-tRNA" tRNA 1762..1830 /product="transfer RNA-Gly" /gene="Gly-tRNA" tRNA 1834..1905 /product="transfer RNA-Leu" /gene="Leu-tRNA" CDS 1906..2280 /gene="ND1" /codon_start=1 /partial BASE COUNT 236 a 139 c 135 g 152 t 4551 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~--~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~--~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~CCGA-UCC| 1561 A|-GUAA-A- CG-AAA---a caaag----- ---------- (--------- ---------- 1621 --------)- ---------- ----|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- AAGGA|-GGU 1921 -AAA-A---U ACGU-G(CCC AGCCACC-GC -G-U-UA)-A ACGUAU|--- -GCC-CUA-A 1981 AGUAA-AACU aga--c---- --cGGU|GUA AAGGGUGGuu -a-gaa---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ---uguuaca gccuag--cu -----|auag uuuuua-uga u---AGUG(G 2341 UAGAA)AACU UA-------c cuaa-aauaa aau------- ---------- ---------- 2401 ----|----- ----agcuag ----cuauac ---------- uuu-ga-cCC ACGAA-AACU 2461 A-GG----CA UAAACCAG-( AUUAGAUAC) CCUG-UUAU| -ACCU-AGA- agua------ 2521 ---------- |--|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(caac)c u------aua 2701 a-a|--C|AC C-AGAG-AAC UACuua-(-- --a-cu-)-u aaguuAAACU CAA-GGAC-U 2761 U-|GCG-U-- UUCCAAA--C CUCCUGAG|- GAGCUUGC-C |GUCGG--AU CG(AUAAUCC 2821 A--------- ----)CGCUA U-ACCUUACC GAUUCUUGCC ---------- ---------- 2881 (-------uu ca-)------ ------(--- --)----<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->-------- ---C---AGC UUA-UA|CA- 3121 |UC|-ug--c |g------aa au-uu---cu ucc-|uaa(g a-aag)uua- -----(---- 3181 ---)------ -------ACA CAA-AGAG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ucaau- 3781 ---------C UCUUCA-cau c-agaucaag -|UGCA|GCU UAU------- ---------G 3841 A-A-UC-GG- GG-ACA--GG -UGAGCUACA AU--GUU--- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(aau aaa--)---- ---------- ---------- --A-ACca-- 4021 ---------- ------GUGA --AAUAA-GG G-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAa-ua) G-UC-C--UU -A--AGAAA- -UUGGAUUCA 4141 G-C--AGUAA G-CCCCAG(- -aaga-ga-- --)AUGGGGC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GAA--AGCU 4261 CUG-AA-UG- CGUACACA-U -CGCCCGUCA C-UCU--CGC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< agcc-aaa-- 4381 --g-g-uaa- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGA-A AAGUCGUAAC AUAGUAGG-U AUA-CC(GGA 4621 -A)GGU-GC- ACCUGGAAAA U--------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.livid 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Paracentrotus lividus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Paracentrotus lividus. ORGANISM Mitochondrion Paracentrotus lividus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: J04815 DEFINITION Paracentrotus lividus mitochondrion. REFERENCE 1 (bases 1 to 15697) AUTHORS Cantatore,P., Roberti,M., Rainaldi,G., Gadaleta,M.N. and Saccone,C. TITLE the complete nucleotide sequence, gene organization, and genetic code of the mitochondrial genome of paracentrotus lividus JOURNAL J. Biol. Chem. 264, 10965-10975 (1989) COMMENT Computer readable copy of sequence [1] kindly submitted by M. Roberti 26-JUL-1989. FEATURES from to/span description BASE COUNT 323 a 194 c 168 g 193 t 4335 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---acCGAUU 661 (UGG-)U-CC U|AGUCC-UA ACU-UUAGCU -A-AUUU-UU |AG-UU--GC -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -----ccaau g)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- aCAAACCAGU GAAGUA-aAA A|UUU-Ugg- --uc-u---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ----ccccac cu(-aaaa-- )agagaca-- 1261 ---------- ---------- ---g--gag- c-aAAAA-UU |c-------- UAGUAUCA-- 1321 -GGCCCua-- -----(acca ---------- ---------- ---------- ------)--- 1381 ---au|---- GCCCA--CGA C|ACUAA-GC --|------- (aauac-)-- -------GC| 1441 CACA------ ---------- ---------- -|-------( -acu-)---- ---------- 1501 GCA|GUA-CU AAACAUUAGA C-AAUCGGA( ---------- ----AAAA)U CCGGA-UCU| 1561 A|-GCAA-A- AA-AAU---a agc------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- AAGGG|-GGC 1921 -AAA-A---U ACGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGUAC|--- -UUC-CUA-A 1981 AGCUA-AAua a--------- aaCGGU|auA AAGGGCGGUU -A-gaa---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ----aaauag auuuga--cu -----|GUAG cuccca-gcu ----aGUG(G 2341 UAAAA)AACU AA-------u cuga-gaagA AAC------- ---------- ----(-aua- 2401 -)--|----- ----agucaa a---auauuu a--------- uuu-gaacCC GCGAA-AACU 2461 A-AGA---CC UAAACCAGG( AUUAGAUAC) CCUA-CUAU| -ACUU-AGA- cgua------ 2521 ---------- |--|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(caac)- -------cua 2701 a-g|--C|AC C-AGAG-AAC UACAAAC(-- -uaaa-a)GU UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUU- UUCCAUA-CC UCCCUGGA|- GAGCUUGC-C |AUUGA--AU CG(AUAAUCC 2821 A--------- ----)CGAAA C-ACCUCACC AACUUUUGUA ---------- ---------- 2881 (-------aa u--)------ ------(--- --)----<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->-------- ---C---AGC UUG-UA|UA- 3121 |CC|-AU--C |G------UC GU-AA|G-UC UAC-|uuc(u --uaa)gaa- -----(---- 3181 ---)------ --aGUUGGCU CCU-AGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aaaau- 3781 ---------U CCCAGA-CGU C-AGAUCAAG G|UGCA|GCA CAU------- ---------A 3841 A-G-CU-GG- GA-AUG--AG -UGAGCUACA AU--GUU--- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- uuu--)---- ---------- ---------- --A-ACgacc 4021 a--------- ------GCGA --AAAUA-GA A-a(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-a-) a-UU-C--UU -U--AGAAG- -UUGGAUUCA 4141 G-C--AGUAA G-CCCCAA(- auaga-aa-- --)AUGGGGC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AAG--AGCU 4261 CUGGAA-UG- CGUACACA-U -CGCCCGUCA C-UCU--CGC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< agcuuaacu- 4381 uaa-g-ua-- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGA-A AAGUCGUAAC ACAAUAGG-C ACA-CC(GGA 4621 -A)GNN-NN- NCCUGGAAAA U--------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.H.pulch 5213 bp RNA RNA 24-NOV-1998 DEFINITION Mitochondrion Hemicentrotus pulcherrimus.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION AJ1307 7 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Hemicentrotus pulcherrimus. ORGANISM Mitochondrion Hemicentrotus pulcherrimus. REFERENCE 1 (bases 1 to 763) AUTHORS Ogawa,M., Amikura,R., Akasaka,K., Kobayashi,S., Kinoshita,T. and Shimada,H. TITLE Graded distribution of Mitochondrial 12S rRNA and 16S rRNA from vegetal to animal pole in sea urchin embryos JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 763) AUTHORS Shimada,H. TITLE Direct Submission JOURNAL Submitted (20-NOV-1998) Shimada H., Graduate Department of Gene Science, Faculty of Science, Hiroshima university, Kagamiyama, Higashihiroshima, Hiroshima 739-8526, JAPAN STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AJ130797 BASE COUNT 290 a 159 c 150 g 164 t 4450 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 ~~~~~~~~~~ ~|~GUCC-CA AUC-UUAACU -A-CUUU-UG |AG-GU--GC -CAC-A-UGC 721 -AAGc----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -----cuacu a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGAACCAGU GAAGUA-aAU U|CUUgUuc- --cc-u---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- -----aagac cu(-aaaa-- )agaaaag-- 1261 ---------- ---------- ---a--ggg- a-aGAAA-AA |g----au-- CAGUAUCA-- 1321 -GGCACuaa- -----(auaa a--------- ---------- ---------- ------)--- 1381 --uag|---- GCCCA--CAA C|ACUAA-GC --|-----aa (-uacg-)cc -------a-| 1441 --ca------ ---------- ---------- -|-------( -acu-)---- ---------- 1501 GCA|GUG-CU AAACAUUAGA C-AAUCGGA( ---------- ----AAAA)U CCGGA-UCU| 1561 A|-GCAA-A- AG-AAG---u aug------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- AAGGG|-GGU 1921 -AAA-A---U ACGU-G(-CC AGCCACC-GC -GGU-UA)-U ACGUAA|--- -UCC-CUA-U 1981 AGUUA-Aaua ---------a uacggu|gaa aagagugguu -a-gaa---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ---gaaaaau gauugg--cu -----|GUAG cuuugg-gcu ----aGUG(G 2341 UAAAA)AACU AA-------c ccca-caaga aac------- ---------u --cu(-cacc 2401 -)cc|a---- ----aauuga ----aua--- ---------- uuu-gaagcc acGAA-AACU 2461 A-AGG---CC UAAACCAGG( AUUAGAUAC) CCUG-UUAU| -ACUU-AGA- agug------ 2521 ---------- |--|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -aa(caac)c -------uua 2701 a-g|--c|ac c-AGAG-AAC UACGAAC(-- cuaaa--)GU UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUU- UUCCAAA-CC UCCCUGGA|G GAGCUUGC-C |AUUGA--AU CG(AUAACCC 2821 A--------- ----)CGAAA C-ACCUCACC AACUUUUGUA ---------- ---------- 2881 (-------ac aa-)------ ------(--- --)----<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->-------- ---C---AGC UUG-UA|UA- 3121 |CC|-AU--C |G------UC GU-AA|G-UC UAC-|uu-(c --uug)-ag- -----(aaa- 3181 ---)------ ---GUUGACU UUA-AGAG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----agaa- 3781 ---------C CCUAGA-CGU C-AGAUCAAG G|UGCA|GCC UAU------- ---------A 3841 A-G-UU-GG- GA-AUA--GG -UGAGCUACA AU--GUUU-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g aac--)---- ---------- ---------- -AA-ACcag- 4021 ---------- -------UGA --AAGAA-GG A-a(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-a-) --UC-C--CU -C--AGAAA- -UUGGAUUCA 4141 G-C--AGU-A A-GCCCCA(u aaaga-aa-- --)Aaaaaaa ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 4621 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.purpu 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Strongylocentrotus purpuratus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Strongylocentrotus purpuratus. ORGANISM Mitochondrion Strongylocentrotus purpuratus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X12631 EFINITION Sea urchin complete mitochondrial genome. REFERENCE 1 (bases 1 to 15650; enum. 1 to 15650) AUTHORS Jacobs,H.T. TITLE ; JOURNAL Unpublished (1988) see COMMENT for author address REFERENCE 2 (bases 1 to 15650; enum. 1 to 1560) AUTHORS Jacobs,H.T., Elliott,D.J., Math,V.B. and Farquharson,A. TITLE Nucleotide Sequence and gene organization of sea Urchin Mitochondrial DNA JOURNAL J. Mol. Biol. 202, 185-217 (1988) BASE COUNT 285 a 186 c 194 g 200 t 4348 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---gcCGAUU 661 (UGG-)U-CC U|AGUCC-CA AUC-UUAACU -A-CUGU-UG |AG-GU--GC -CAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -----ccacu a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gCGAACCAGU GAAAUA-gAA U|CUUaUuc- --cc-u---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- -----aaaac cu(-ggaa-- )agaagaaa- 1261 ---------- ---------- ---a--ggg- a-aAGAG-AA |g----ac-- CAGUAUCA-- 1321 -GGCACuaa- -----(guag a--------- ---------- ---------- ------)--- 1381 --uga|---- GCCCA--CGA C|ACUAA-GC --|---aaga (-gag--)uc u------gc| 1441 u-ca------ ---------- ---------- -|-------( -acu-)---- ---------- 1501 GCA|GUG-CU AAAUAUUAGA C-AAUCAGA( ---------- ----AAAA)U CCGGA-UUU| 1561 A|-GCAA-G- GG-AAG---u aua------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- AAGGA|-GGU 1921 -AAA-A---U ACGUuG(-CC AGCCACC-GC -GGU-UA)-U ACGUAA|--- -UUC-CUA-C 1981 AGUUA-Aaua ---------- -guacg|gug aaaagggugu -uagaa---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -----aaguu cauugg--uu -----|GUAG cuuugg-gcu ----aGCG(G 2341 UAUAA)UUUU AA-------u ccca-cacgA UAC------- ---------c -cuu(-accc 2401 -)cc|a---- ----aauuaa ----gca--- ---------- uuu-gaagcc acGAA-AUCU 2461 A-AGG---CC UAAACCAGG( AUUAGAUAC) CCUG-UUAU| -ACUU-AGA- a--------- 2521 ---------- |--|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------g|ug u--------a acacccc(-- -uaaa--)GU UCA--AAAUU CAAAGGAU-U 2761 UG|GCGGUU- UUCCAAA-CC UCCCUGGA|- GAGUUUGC-C |AUUGA--AU CG(AUAACCC 2821 A--------- ----)CGAUC C-ACCUCACC AAUUUUUGUA ---------- ---------- 2881 (-------ac ac-)------ ------(--- --)----<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->-------- ---C---AGC UUG-UA|UA- 3121 |CC|-AU--C |G------UC GU-AA|G-UC UAC-|uu-(c --uug)-ag- -----(aaa- 3181 ---)------ ---GUUGACU UUA-AGGG-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----agaa- 3781 ---------C CCUGGA-CGU C-AGAUCAAG G|UGCA|GCC UAU------- ---------A 3841 A-G-UU-GG- GG-AUA--GG -UGAGCUACA AU--GUUU-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g aac--)---- ---------- ---------- -AA-ACcag- 4021 ---------- ------UUGG --AAGGA-GG G-a(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-a-) --CC-C--CU -C--GGAAU- -UUGGAUUCA 4141 G-C--AGU-A G-GCCCAC(- uaaga-ga-- --)AUGGGGC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AAG--AGCU 4261 CUGGAA-UG- CGUACACA-U -CGCCCGUCA C-UCU--CGC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aguuaagau- 4381 -uaca-ca-- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGGG-AGA-C AAGUCGUAAC ACAAUAGG-C ACA-CC(GGA 4621 -N)NNN-NC- GCNNNGAAAA U--------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (9)-HEMICH 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.B.carno 5213 bp RNA RNA 21-APR-1998 DEFINITION Mitochondrion Balanoglossus carnosus.; . ACCESSION AF0510 7 KEYWORDS . SOURCE Mitochondrion Balanoglossus carnosus. ORGANISM Mitochondrion Balanoglossus carnosus. REFERENCE 1 (bases 1 to 15708) AUTHORS Castresana,J., Feldmaier-Fuchs,G. and Paabo,S. TITLE Codon reassignment and amino acid composition in hemichordate mitochondria JOURNAL Proc. Natl. Acad. Sci. U.S.A. 95 (7), 3703-3707 (1998) STANDARD No information REFERENCE 2 (bases 1 to 15708) AUTHORS Castresana,J., Feldmaier-Fuchs,G. and Paabo,S. TITLE Direct Submission JOURNAL Submitted (25-FEB-1998) Institute of Zoology, University of Munich, Luisenstrasse 14, Munich D-80333, Germany STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF051097 BASE COUNT 263 a 206 c 155 g 192 t 4397 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --agcCAAUU 661 (UGA-)U-CC U|AGUUG-CC UAA-CUAGCU ---CUCUcac |uc-c---au -UAC-A-UGC 721 -AAGu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------a-c c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- guGCACCA-- ---------- -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------- -----)---- 1261 ---------- ---------- ---------- ---------- |--------- ---------- 1321 ---------- -----(---- ---------- ---------- ---------- ------)--- 1381 -----|---- ---------- -|-------- --|------- (------)-- ---------| 1441 ---------- ---------- ---------- -|--acuggu ucaaccucaa caaa---a-A 1501 GCA|GUA-AA UAACUUUAAG C-AAUAGGC( ---------- ----GUCA)G CCUGA-CUU| 1561 A|-Gga--a- uA-GAG---a aga------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ACACC|-GGC 1921 -AAA-U---C UCGU-G(-CC AGCAGCC-GC -GGU-UA)-U ACGAGA|--- -AGU-AUA-- 1981 AGCUA-ACUA C--------- gccGGC|GUA AAU-GUGGUU -A-aac---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ----uuaguc uuacaa--au -----|aaau gcuuuu-cuu -----gcu(g 2341 uuugc)acgc cc-------c uaaa-agcca gaa------- ---------- ---------- 2401 ----|----- ----auuugu a----ccucc ac-------- guc--caaCC ACAAA-AGCU 2461 A-GAA---aa uAAACCGGG( AUUAGAUAC) CCCG-CUAU| -AUCU-AGC- CGUCAC-CAU 2521 C--UU----- |--|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ------ac-u u---u-uuc- 2701 A-A|--A|GC C-AGAG-AAC UAUAUAC(-- --AAA--)GU ACA--AAACU CAAAGGAU-U 2761 UG|GCGGUA- UCUUAAA-CC UAACUAGA|G GAGCCUGC-C |UUUUA-aAC CG(AUAACCC 2821 G--------- ----)CGUUA C-ACCUCACC AACUCUUGCu ---------- ---------- 2881 (-------uu uc-)------ ------(--- --)----<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->-------- ---C---CGC CUG-UA|UA- 3121 |CC|-AU--C |G------UC GU-CA|G-CC UAC-|UUU(G --UGA)AAA- -----(cac- 3181 auc)------ --AGCAGGCA AAA-CGGa-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cuu-- 3781 ---------g CCAAUA-CGU C-AGAUCAAG G|UGCA|GCU AAU------- ---------G 3841 A-G-UU-AG- GG-AAC--GG -UUGGCUACA CU--ccu--- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- ucc--)---- ---------- ---------- --a-ggg--- 4021 ---------- ------ACGA --AUUAU-UA C-U(------ ---------- ---------- 4081 ---------- ---------- UGCAAc---) A-GU-U--AU -A--UGAAG- -cagGAUUUA 4141 G-C--CGUAG U-UAAAGA(- aagua-c--- --)ACUUUAA C-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GAA--AGCU 4261 CUGAGA-UG- CGUACACA-U -CGCCCGUCA C-UUC--CCC C--------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< --accaaag- 4381 cuacu-aguc cauaauaauu accaaaauag a--------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GGGG-GAA-A AAGUCGUAAC AUAGUAGG-C GUA-CU(GGA 4621 -A)AGU-GC- GCCUGG-ccc ac-------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (8)-PROTOS 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (9)-ANNELI 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.L.terre 5213 bp RNA RNA 11-JAN-191 DEFINITION Lumbricus terrestris. ACCESSION No information KEYWORDS No information. SOURCE Lumbricus terrestris. ORGANISM Lumbricus terrestris. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U24570 LOCUS LTU24570 14998 bp DNA circular INV 09-SEP-1995 DEFINITION Lumbricus terrestris mitochondrion, complete genome. ACCESSION U24570 KEYWORDS . SOURCE common earthworm. ORGANISM Mitochondrion Lumbricus terrestris Eukaryotae; mitochondrial eukaryotes; Metazoa; Annelida; Oligochaeta; Haplotaxida; Lumbricina; Lumbricidae; Lumbricus. REFERENCE 1 (bases 1 to 14998) AUTHORS Boore,J.L. and Brown,W.M. TITLE Complete sequence of the mitochondrial DNA of the annelid worm Lumbricus terrestris JOURNAL Genetics 141, 305-319 (1995) REFERENCE 2 (bases 1 to 14998) AUTHORS Boore,J.L. and Brown,W.M. TITLE Direct Submission JOURNAL Submitted (10-APR-1995) Jeffrey L. Boore, Cell Biology and Neuroanatomy, University of Minnesota, 321 Church St. SE, 4-135 Jackson Hall, Minneapolis, MN 55455, USA COMMENT NCBI gi: 984290 FEATURES Location/Qualifiers source 1..14998 /organism="Lumbricus terrestris" /mitochondrion CDS 1..>1540 /gene="COI" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984291" /codon_start=1 /transl_table=5 /product="cytochrome oxidase subunit I" /translation="MRWFYSTNHKDIGTLYFILGVWAGMVGAGMSLLIRIELSQPGAF LGSDQLYNTIVTAHXFVMIFFLVMPVFIGGFGNWLLPLMLGAPDMAFPRLNNMSFWLL PPSLILLVSSAAVEKGAGTGWTVYPPLASNLAHAGPSVDLAIFSLHLAGASSILGAIN FITTVINMRWSGLRLERIPLFVWAVLITVVLLLLSLPVLAGAITMLLTDRNLNTSFFD PAGGGDPILYQHLFWFFGHPEVYILILPGFGAISHIVSHYTAKLEPFGALGMIYAMLG IAVLGFIVWAHHMFTVGLDVDTRAYFTAVTMIIAVPTGIKVFSWLATIHGSKIKYETP VLWALGFIFLFTTGGLTGIILSNSSLDIILHDTYYVVAHFHYVLSMGAVFAIFAAFTH WFPLLTGLTLHHRWANAQFFLMFLGVNTTFFPQHFLGLSGMPRRYSDYPDAFMKWNVV SSFGSLLSFVALMLFIFILWEAFASQRSVISSPHMSSALEWSDPILPLDFHNLSETGI ITYPK" tRNA 1541..1601 /product="tRNA-Asn" CDS 1603..>2288 /gene="COII" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984292" /codon_start=1 /transl_table=5 /product="cytochrome oxidase subunit II" /translation="MPNWGQVMFQDAASSVMLQLVSFHDHALLVLTLVLTVVGYALLA LMLNKQVNRYIMEAQTVETIWTILPALILLVLALPSLRILYITDEVSQPSITVKTIGH QWYWSYEYTDFLNVEMDSYMLPTSDLLPGDYRLLEVDNRMVVPMQLEIRMLITAADVI HSWTVPALGVKVDAVPGRLNQIGFTTTQPGVFYGQCSEICGANHSFMPIAVEAINTKS FMSWVSNFKP" tRNA 2289..2349 /product="tRNA-Asp" CDS 2350..>2509 /gene="ATPase8" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984293" /codon_start=1 /transl_table=5 /product="ATP synthase subunit 8" /translation="MPHLSPMSWITSMLMFWISVSILFSTLWWSNNYLFSSKMTNCAP KSLTPWNWL" tRNA 2510..2573 /product="tRNA-Tyr" tRNA 2572..2633 /product="tRNA-Gly" CDS 2635..>3413 /gene="COIII" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984294" /codon_start=1 /transl_table=5 /product="cytochrome oxidase subunit III" /translation="MIRQPFHLVEYSPWPLTSSIGAFTLAIGLASWFHNHGFLCLTLA AFLIIVSMIQWWRDVVREGTYMGHHTSLVTTGLRWGMILFITSEVMFFLAFFWAFFHS SLSPTPEIGCSWPPTGIHPLNPFSVPLLNTAVLLASGVTVTWAHHSLMSGKRIDATQA LILTVCLGAYFTFLQAGEYMAAPFSIADSVYGTTFFVATGFHGLHVLIGSSFLAICLA RTWSHHFSAGHHFGFEAAAWYWHFVDVVWICLYLCIYWWGS" tRNA 3414..3482 /product="tRNA-Gln" CDS 3483..>3951 /gene="ND6" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984295" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 6" /translation="MILTSFMLMMIATTFTLYLASTPIVLGVNILMMALLLASTFASF MSSWFAFLIFLIYIGGMLVMFAYFLALTPNQQISNFNIMPYALITLLTFSALTYTTNI KIPTFSDISQGNSILYMSSTAPFLILLALILLLTMVIVVKLTSRSSGPLRPFSP" CDS 3952..>5089 /gene="cytb" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984296" /codon_start=1 /transl_table=5 /product="cytochrome b apoenzyme" /translation="MFKPIRTTHPAIKIINSTLIDLPAPNNISIWWNYGSLLGLCLVI QVLTGLFLSMHYVPNIEMAFSSVALISRDVNYGWLLRSIHANGASMFFLFIYLHAGRG LYYGSYNLSETWNIGVILFLLTMATAFMGYVLPWGQMSFWGATVITNLFSAIPYIGKT LVEWIWGGFAVDNATLNRFFAFHFILPFAIMGATILHIMFLHESGSNNPIGLNADSDR IPFHPYYSIKDTLGYTLAISALSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFL WMYAILRSIPNKLGGVMALFAAIVILFIPPLTSVMNKRSLSFYPLNKTMFWGLVASWA ILTWIGGRPVEDPFIIIGQVFTSLYFIYFISSPTISKLWDDSIII" tRNA 5156..5217 /product="tRNA-Trp" CDS 5220..>5913 /gene="ATPase6" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984297" /codon_start=1 /transl_table=5 /product="ATP synthase subunit 6" /translation="MMPDIFSSFDPYMFNTLFPLNSLFLVTNTAIILMIQSSFWVLNA RTSAFKSPVNDTIFTQLSRTSTTHLKGLSTPLSTIFFMLVMINLMGLIPYMFSTSSHL VFTLSLGFPIWLSLMISTFAHSPKKSTAHFLPDGAPDWLNPFLVLIETTSVFVRPLTL SFRLAANMSAGHIVLSLMGIYCAAAWFSSVSSTALLILTAIGYILFEVAICLIQAYIF CLLLSLYSDDHAH" tRNA 5914..5980 /product="tRNA-Arg" misc_feature 5981..6364 /note="Large unassigned region" tRNA 6365..6426 /product="tRNA-His" CDS 6427..>8150 /gene="ND5" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984298" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 5" /translation="MLRMFNTSLVASKLMWVIFTGMLAPTLYMVHCNSTLLLEWNLFS ISSTPMMMTIILDPLGLMFSCTVVMISANILKFSTIYMKEDKFINRFTVLVLLFVLSM NMLIFFPHLIILLLGWDGLGIVSFILVIYYQNPKSLAAGMITALTNRIGDVMLLLAIA WTLNQGHWNILHMWAVDENMYQALVIIIAAMTKSAQMPFSSWLPAAMAAPTPVSALVH SSTLVTAGVFLLIRFYNFLSSVWWFTTFLLFVAVSTTLMAGLSASSECDMKKIIALST LSQLGMMMAAMGLGMAHMAFFHMVTHAMFKALLFVCAGSFIHSHMHSQDLRWMGNLTK QMPTTTSCLIMANLALCGFPFMSGFYSKDMIVEASLYYPHNSLMINLILFAVGLTAFY STRFTMCVVLSPNNCGPYMHLEESNSLTSPMLLLASMSVISGSALTWILPLKQEMMMI PLDQKLKTLMLVTLGALMSWFFLTTTNMTKTCLYIRHPIINYFSCTMWFLVPLSSQFM MKLPMYVSHNYLKLTDQSWLELLGGQGINNVSSKASNIYLASLKSTPMNYLMMSSMLL LVATLVAI" tRNA 8151..8212 /product="tRNA-Phe" tRNA 8213..8277 /product="tRNA-Glu" tRNA 8276..8337 /product="tRNA-Pro" tRNA 8338..8401 /product="tRNA-Thr" CDS 8402..8698 /gene="ND4L" /note="Method: conceptual translation supplied by author. NCBI gi: 984299" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 4L" /translation="MYSSIMSLVFLLPIVAVVNLISNQSHFLMTLLSLEGITLSLVLF VPISLSIMSASNVSISVILLTFGACEASLGLSLMVLMSRSYGTDMLNSLTANKC" CDS 8692..>10048 /gene="ND4" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984300" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 4" /translation="MLKLQMVLMSLLLLPLIVNLYPWIIALTLSALLLPTCFNLVNSA SYSMFTEYMSSDMMSFTLSALTIWVTVMMILASTKIMHLNMYPKMFMTNLVILLIILI NCFLSPNLIMFYIWFEASLIPTMVLIMTWGYQPERSQASMYLMIYTVAASLPMLMVLC KIFIVSKTAMMPMFMNMEFPMDYPSMALAWVLTLGGFLVKLPMFTVHLWLPKAHVEAP IAGSMILAAILLKLGGYGILRMLSLFHYMAKSTSSLLSSVALVGAVSTSLICLRQSDL KSLIAYSSVGHMGLMVAGALMSSNWGFQAALAMMIAHGLSSSALFVMANMNYELTHTR SLFLMKGLLVLAPTLTMWWFLFTASNMAAPPSINLLSEIMLITSILKMSTSAFILLGL TSFFTAAYCLYMYTSMHHGPLMLTSNPIPQFKVKDLTLMTMHLVPTILIIFKPELITS WS" tRNA 10049..10113 /product="tRNA-Cys" tRNA 10114..10176 /product="tRNA-Met" rRNA 10177..10961 /product="small ribosomal subunit RNA" tRNA 10962..11023 /product="tRNA-Val" rRNA 11025..12269 /product="large ribosomal subunit RNA" tRNA 12270..12330 /product="tRNA-Leu(CUN)" tRNA 12331..12392 /product="tRNA-Ala" tRNA 12393..12455 /product="tRNA-Ser(UCN)" tRNA 12457..12521 /product="tRNA-Leu(UUR)" CDS 12523..>13447 /gene="ND1" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984301" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 1" /translation="MNIPFFTSVLMSLVLALLAMAFYTLMERKFLGYFHLRKGPNKVG LMGLPQPFADAIKLFVKEQAKPNPSNQTPFLFAPTMGLVLALLMWVIYPHSHQSFFIQ FSVLYFLCVSSMNVYTTFLAGWSSNSKYALLGALRGVAQTISYEVSMSLILLSSLIIL STMDFTKMFSYSWILFMFIPLAVVWFITNLAETNRTPFDFAEGESELVSGFNVEYSAG LFALIFMAEYANILIMSLFTSVIFMSTCASGMASDLVLILQTITLAMLFVWVRATYPR MRYDHLMNLTWKSFLPLSLALLMMSIPIAMML" tRNA 13448..13512 /product="tRNA-Ile" tRNA 13513..13576 /product="tRNA-Lys" CDS 13577..>13928 /gene="ND3" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984302" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 3" /translation="MILTALSSAIALLVPIIILGAAWVLASRSTEDREKSSPFECGFD PKSTARIPFSTRFFLLAIIFIVFDIEIVLLMPLPTILHTSDVFTTVTTSVLFLMILLI GLIHEWKEGSLDWSS" tRNA 13929..13992 /product="tRNA-Ser(AGN)" CDS 13993..>14998 /gene="ND2" /note="translation is inferred to terminate on an abbreviated stop codon which is completed by polyadenylation; Method: conceptual translation supplied by author. Author-given protein sequence differs from the conceptual translation for reasons explained in citation. NCBI gi: 984303" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 2" /translation="MKYIKSPTMALAMSTLIMSTLMAVSSANWMFLWGAMELNLLSFI PIMMQSNNNQETEGAVKYFLAQALGSALLLMSSTSMWMTFSMISNFMPLTLMAAIMLK LGSVPCHFWYPSVMASISWVSCLILSSWQKLAPLSILAFLLPQKNMNFMLSMAAMNAL LGGVIGMNQTQLRTIMAYSSIGHIGWMMSLAAVYKPSSCIMYFVVYCILITPLFMTMG YLNMFSTKHMSKLSSYSSTVHMALLMVLLSLGGLPPFTGFMPKLMTIMLLMQSMKIIL LILIAGSIMNLFFYLNIIISSMPLPPHLKNVDSTDIKCSLKFVIPICTLSLGLSPFIM L" BASE COUNT 4476 a 3382 c 2370 g 4766 t 4 others ORIGIN BASE COUNT 275 a 170 c 147 g 193 t 4428 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ----uCAGUU 661 (UGA-)U-UC U|GGCUG-ac aau-UUAGCU -c-UCUU-AA |AC-ua--au aUAC-A-UGU 721 -aagu----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cua a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- gcuacc--cc gcacca--ca u|aua-aa-- --cc-cu--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-aaau-- -----)---- 1261 ---------- ---------- --gg-agaau -aacuau-au ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- u-agaca-ua ---------- (ucuca-)-- -------ua| 1441 ugg------- ---------- ---------- ---------- ---------- uaaagcgu-c 1501 ACA|GUAaga aaaucuaccu --ua-uugc( ---------- ----aaaa)g caa-g-agc| 1561 u|-GGUuaU- UA-AGAuca- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAGUU|-GGC 1921 -AAU-a---u ucgu-G(-CC AGCUGCC-GC -GGU-UA)-G Acgaua|--- -AAC-UCA-- 1981 AGCUA-Auuc au-------a uaagac|uaa uugcaaggCg -A-ucu---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ---------- ---------- -----|a--a aaaaua-acu ---c-aaa(g 2341 ucuaa)uuua ua-------u a--a------ --u------- ---------- -ccg(agacc 2401 -)cg|----- ----uaaac- ---gcc---- ---------- uau-uu-acc guaaa-aCCA 2461 U-AGA---CU AAAACACGG( AUUAGAUAC) CCGU-CUAU| --UUA-UGG- aguaac---- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(--ua)a ---------- 2701 ---|--a|gu c-gaaa--aa uacgaac--- -uaca--)gu uua--aaacu uAAAGAUU-U 2761 UG|GCGGUG- UCUUAuc--- aacccagg|G GAACCUGU-C |UCAUA-acU CG(AUAACCC 2821 A--------- ----)CGACA C-UCUCACCC UCCCUAGACU ---------- ---------- 2881 (-------aa a--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC UUG-UG|UA- 3121 |CU|-GC--C |G------uC GU-AA|G-CA CAC-|cu-(c u-aaa)-ag- ------cca- 3181 agg------- a-aGUGUGCA AUA-auga-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuguc- 3781 ---------u cacccA-CGU C-AGGUCAAA G|UGCA|GCC C--------- ---------A 3841 U-G-GA-CG- GA-GAU--GA -UGGGUUACA CC--ua---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(aac aaa-g)---- ---------- ---------- ----au---- 4021 ---------- ------aCGG --AAUAC-AG C-A(------ ---------- ---------- 4081 ---------- ---------- UUAAG----) A-GC-U--GU -G--UAAAG- -GAGGAcuug 4141 a-g----u-g u-aacagu(- auuacaaa-- --)auuaaag u-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ucu--GAAU 4261 CUAAGA-CA- UGCACACA-U -CGCCCGUCA C-UCU--CGC C--------- ---------- 4321 ---------- ---------- ---------- ---------- -(uaaa--)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GGCG-AGA-U AAGUCGUAAC AAAGUAGG-U GUA-AC(GGA 4621 -A)GUU-GC- CCCUGu---- ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (9)-Arthro 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (10)-Crust 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.A.franc 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Artemia franciscana. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Artemia franciscana. ORGANISM Mitochondrion Artemia franciscana. REFERENCE 1 (bases 1 to 15708) AUTHORS Valverde,J.R. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X69067 DEFINITION A.franciscana complete mitochondrial DNA SOURCE Artemia franciscana ORGANISM Artemia franciscana Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Branchiopoda; Sarsostraca; Anostraca; Artimiidae. REFERENCE 1 (bases 1 to 15770) AUTHORS Valverde,J.R. TITLE Direct Submission JOURNAL Submitted (02-NOV-1992) J.R. Valverde, University Autonoma of Madrid, Dept of Biochemistry, School of Medicine, c/ Arzobispo Morcillo 4, Madrid 28029, SPAIN REFERENCE 2 (bases 1 to 15770) AUTHORS Valverde,J.R., Batuecas,B., Moratilla,C., Garesse,R. and Marco,R. TITLE Sequence and organization of Artemia mitochondrial DNA JOURNAL Unpublished FEATURES Location/Qualifiers source <1..>15770 /organism="Artemia franciscana" /dev_stage="cyst" /clone="pMA-1 & pMA-3" /map="0-100" tRNA 1..63 /product="transfer RNA-fMet" CDS 64..954 /gene="ND-2" /EC_number="1.6.5.3" /product="NADH dehydrogenase (ubiquinone)" /transl_table=5 /note="subunit 2" tRNA 953..1015 /product="transfer RNA-Trp" tRNA complement(1033..1095) /product="transfer RNA-Ile" tRNA complement(1104..1169) /product="transfer RNA-Gln" tRNA complement(1208..1268) /product="transfer RNA-Cys" tRNA complement(1281..1342) /product="transfer RNA-Tyr" CDS 1344..2882 /transl_table=5 /gene="CO-I" /EC_number="1.9.3.1" /product="cytochrome-c oxidase" /note="subunit I" tRNA 2878..2940 /product="transfer RNA-Leu(UUR)" CDS 2941..3627 /transl_table=5 /gene="CO-II" /EC_number="1.9.3.1" /product="cytochrome-c oxidase" /transl_except=(pos:2941..2943,aa:Met) /note="subunit II" tRNA 3623..3686 /product="transfer RNA-Lys" tRNA 3690..3751 /product="transfer RNA-Asp" CDS 3752..3913 /transl_table=5 /gene="ATP8" /EC_number="3.6.1.34" /product="H(+)-transporting ATP synthase" /note="subunit 8" CDS 3907..4566 /transl_table=5 /gene="ATP6" /EC_number="3.6.1.34" /product="H(+)-transporting ATP synthase" /note="subunit 6" CDS 4566..5339 /transl_table=5 /gene="CO-III" /EC_number="1.9.3.1" /product="cytochrome-c oxidase" /note="subunit III" tRNA 5341..5401 /product="transfer RNA-Gly" CDS 5402..5737 /gene="ND-3" /EC_number="1.6.5.3" /product="NADH dehydrogenase (ubiquinone)" /transl_table=5 /note="subunit 3" tRNA 5767..5828 /product="transfer RNA-Ala" tRNA 5829..5892 /product="transfer RNA-Arg" tRNA 5893..5955 /product="transfer RNA-Asn" tRNA 5956..6020 /product="transfer RNA-Ser(AGY)" tRNA 6022..6087 /product="transfer RNA-Gln" tRNA 6085..6146 /product="transfer RNA-Phe" CDS complement(6147..7761) /transl_table=5 /gene="ND-5" /EC_number="1.6.5.3" /product="NADH dehydrogenase (ubiquinone)" /note="subunit 5" tRNA complement(7769..7830) /product="transfer RNA-His" CDS complement(7821..8981) /transl_table=5 /gene="ND-4L" /EC_number="1.6.5.3" /product="NADH dehydrogenase (ubiquinone)" /note="subunit 4L" tRNA 9277..9338 /product="transfer RNA-Thr" tRNA complement(9339..9399) /product="transfer RNA-Pro" CDS 9402..9869 /gene="ND-6" /EC_number="1.6.5.3" /product="NADH dehydrogenase (ubiquinone)" /transl_table=5 /transl_except=(pos:9402..9404,aa:Met) /note="subunit 6" CDS 9880..11025 /transl_table=5 /gene="Cyt-b" /EC_number="1.10.2.2" /product="ubiquinol--cytochrome c reductase" tRNA 11029..11095 /product="transfer RNA-Ser(UCN)" CDS complement(11102..11998) /transl_table=5 /gene="ND-1" /EC_number="1.6.5.3" /product="NADH dehydrogenase (ubiquinone)" /note="subunit 1" tRNA complement(12011..12072) /product="transfer RNA-Leu(CUN)" rRNA complement(12073..13225) /product="16S ribosomal RNA" tRNA complement(13226..13288) /product="transfer RNA-Val" rRNA complement(13289..14000) /product="12S ribosomal RNA" 3'UTR 14001..>15770 BASE COUNT 228 a 122 c 153 g 209 t 4501 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---aaAAGUU 661 (UGA-)U-UC U|AGCUA-gu uua-uuuacu -c-uuuc-ua |cg-ag--u- -CAU-A-UGC 721 -AAG------ -----|---- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- ---------- ---------- -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- -auauc-auu 1141 aua---ggu- -uagaagu-- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- |--------- ---------- 1321 ---------- -----(---- ---------- ---------- ---------- ------)--- 1381 -----|---- ---------- -|-------- --|------- (------)-- ---------| 1441 ---------- --(------- ---)------ -|-------( -----)---- ---------- 1501 GCA|GUG-AU UGACAUUAU- --ugccua-( ---------- ---cuucu)- uaggu--au| 1561 A|-gcg--aa cg-aaaaga- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- UAGGG|-GGA 1921 -CCA-C---U UUGU-G(-CC AGCAUCC-GC -GGU-CA)-U ACAAGG|--- -CCC-UAG-- 1981 agcaa-auau u--------- uuaGGU|gaa -ca-gaggag ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- -cuuuggg-- -acaag--uu -----|a-uu uuagau-caa ---uaAGG(G 2341 UGAAA)UUU- ---------- gcau-uua-- --u------- ---------- ---u(-cucc 2401 -)au|u---- ----uguuug aauaaagc-- ---------- --------ac ucuuu-agau 2461 g-gcc---AA ACAACUAGG( AUUAGAUAC) CCUA-UUAG| --uuc-auu- ---------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ------ucua au-------- 2701 ---|-ua|AC C-UGGG---- --uagu-(-- ---au-u)-a uuu--AAACC UAAAGAAU-U 2761 UG|GCGGUU- UCUAA---AC UUACUAGA|G GAACCUGC-C |CCAUA--AA CG(ACAAUCC 2821 A--------- ----)CGAGa c-AACCGACC CGUUCUUGUA ---------- ---------- 2881 (--------a aa-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC UUA-UA|UA- 3121 |CC|-GU--C |G-------u uu----a-gg gg--|auu(a a-aua)aau- -----(---- 3181 ---)------ --aacugcuc uuaauugc-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuag-- 3781 ---------g cuaaua-aau C-AGAUCAAG G|UGUA|GCU UAU------- ---------G 3841 U-C-CG-GG- -A-GAG--GG -UGGGUUACA AU--aa---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g aac--)---- ---------- ---------- ----uuaa-- 4021 ---------- ------ACGG --AACUU-UC A-U(------ ---------- ---------- 4081 ---------- ---------- UUUAUc---) A-UG-G--AG -A--AGAAG- -GUGGAUUUA 4141 G-A--AGUAa g-gu----(- cuauc-a--- --)----acc u-gaa----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GGA--GGCU 4261 CUGAGA-AA- UGUACACA-U ACGCCCGUCG C-UCU--CUU G--------- ---------- 4321 ---------- ---------- ---------- ---------- -(ucc---)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAAG-AGA-U AAGUCGUAAC AAAGUAGG-U AUA-CC(GGA 4621 -A)GGU-GU- AUCUUGAAAG A--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.D.curvi 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Daphnia curvirostris. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Daphnia curvirostris. ORGANISM Mitochondrion Daphnia curvirostris. REFERENCE 1 (bases 1 to 15708) AUTHORS Lehman N., Pfrender M.E., Morin P.A., Crease T.J., Lynch M. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U13906 ID MIDCCU139 standard; DNA; ORG; 288 BP. XX AC U13906; XX DT 25-NOV-1994 (Rel. 41, Created) DT 25-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE Daphnia curvirostris isolate TJC mitochondrion 12S ribosomal RNA DE gene, partial sequence. XX KW . XX OS Daphnia curvirostris OC Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Eucladocera; OC Daphniidae. XX OG Mitochondrion XX RN [1] RP 1-288 RA Lehman N., Pfrender M.E., Morin P.A., Crease T.J., Lynch M.; RT "A hierarchical molecular phylogeny within the genus Daphnia"; RL Unpublished. XX RN [2] RP 1-288 RA Lehman N.; RT ; RL Submitted (22-AUG-1994) to the EMBL/GenBank/DDBJ databases. RL Niles Lehman, Department of Biology, University of Oregon, Klamath RL Hall, Eugene, OR 97403, USA XX CC NCBI gi: 535576 XX FH Key Location/Qualifiers FH FT source 1..288 FT /organism="Daphnia curvirostris" FT /isolate="TJC" FT /mitochondrion FT rRNA <1..>288 FT /product="12S ribosomal RNA" XX SQ Sequence 288 BP; 104 A; 62 C; 40 G; 82 T; 0 other; BASE COUNT 82 a 40 c 62 g 104 t 4925 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~--~- -~~~-~-~~~ 721 -~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~(~~~~~-~ ~~~)~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~~~~~| 1561 ~|-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~~~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| --~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~-~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ 2701 ~~~|-~~|~~ ~~~~~~-~~G UAAAAGU(-- ---ug-u)UC UUC--AAACC CAAAGAUU-U 2761 UG|GCGGCA- CUUUAU--CC AA-AUAGA|G GAGCUUGC-C |CUGUA--AU CG(AUAACCC 2821 U--------- ----)CGUUU U-AUCUUUCC UUUAUUUGUU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---U---AGC UUG-UA|UA- 3121 |CC|-GC--C |G------UU GC-CA|G-AU UAC-|UUU(U --AUA)GGA- -----(---- 3181 ---)------ --uGUUUUCA UAA-aaga-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----gguu-- 3781 ---------u cuCUAA-CUU C-AGGUCAAG G|UGCA|GUU UAU------- ---------G 3841 U-A-GG-GG- -u-aga--GG -UGAGCUACA AU--uuu--- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ga uua--)---- ---------- ---------- ---gaaaa-- 4021 ---------- ------AUGA --AAAUU-CA A-u(------ ---------- ---------- 4081 ---------- ---------- uuauaa---) --GU-U--GG -U--GGAAG- -GUGGAUUUA 4141 U-U--aguaa g-guaguu(- uaagu-a~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -(~~~---)< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>--~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.magna 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Daphnia magna. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Daphnia magna. ORGANISM Mitochondrion Daphnia magna. REFERENCE 1 (bases 1 to 15708) AUTHORS Lehman N., Pfrender M.E., Morin P.A., Crease T.J., Lynch M. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U13908 ID MIDMMU139 standard; DNA; ORG; 288 BP. XX AC U13908; XX DT 25-NOV-1994 (Rel. 41, Created) DT 25-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE Daphnia magna isolate TJC mitochondrion 12S ribosomal RNA gene, DE partial sequence. XX KW . XX OS Daphnia magna OC Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Eucladocera; OC Daphniidae. XX OG Mitochondrion XX RN [1] RP 1-288 RA Lehman N., Pfrender M.E., Morin P.A., Crease T.J., Lynch M.; RT "A hierarchical molecular phylogeny within the genus Daphnia"; RL Unpublished. XX RN [2] RP 1-288 RA Lehman N.; RT ; RL Submitted (22-AUG-1994) to the EMBL/GenBank/DDBJ databases. RL Niles Lehman, Department of Biology, University of Oregon, Klamath RL Hall, Eugene, OR 97403, USA XX CC NCBI gi: 535578 XX FH Key Location/Qualifiers FH FT source 1..288 FT /organism="Daphnia magna" FT /isolate="TJC" FT /mitochondrion FT rRNA <1..>288 FT /product="12S ribosomal RNA" XX SQ Sequence 288 BP; 105 A; 55 C; 42 G; 86 T; 0 other; BASE COUNT 86 a 42 c 55 g 105 t 4925 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~--~- -~~~-~-~~~ 721 -~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~(~~~~~-~ ~~~)~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~~~~~| 1561 ~|-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~~~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| --~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~-~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ 2701 ~~~|-~~|~~ ~~~~~~-~~G UAAAAGU(-- ---ug-u)UC UUC--AAACC CAAAGGUU-U 2761 UG|GCGGCA- UUCUAA--CC AA-ACAGA|G GAGCUUGU-C |UUGUA--AU CG(AUAACCC 2821 U--------- ----)CGUUU U-AUCUUACC UUCAUUUGUU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---U---AAC UUG-UA|UA- 3121 |CC|-UC--C |G------UU GU-CA|G-AU UAC-|UCC(A --AAA)GGA- -----(---- 3181 ---)------ --uGUUUUCU AUA-aaau-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uaau-- 3781 ---------c uuUUUA-CUU C-AGGUCAAG G|UGCA|GUU UAU------- ---------G 3841 U-G-AA-GG- -a-aau--GG -UGAGCUACA GU--uuu--- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua aaa--)---- ---------- ---------- ---aaaau-- 4021 ---------- ------ACGG --AUCUU-AA A-a(------ ---------- ---------- 4081 ---------- ---------- uuauaa---) --UU-U--GG -G--UGAAG- -GUGGAUUUG 4141 U-U--aguaa g-cuuauu(- uuagg-a~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -(~~~---)< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>--~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.obtus 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Daphnia obtusa. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Daphnia obtusa. ORGANISM Mitochondrion Daphnia obtusa. REFERENCE 1 (bases 1 to 15708) AUTHORS Lehman N., Pfrender M.E., Morin P.A., Crease T.J., Lynch M. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U13910 ID MIDOOU139 standard; DNA; ORG; 288 BP. XX AC U13910; XX DT 25-NOV-1994 (Rel. 41, Created) DT 25-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE Daphnia obtusa isolate TEP 92-58 mitochondrion 12S ribosomal RNA DE gene, partial sequence. XX KW . XX OS Daphnia obtusa OC Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Eucladocera; OC Daphniidae. XX OG Mitochondrion XX RN [1] RP 1-288 RA Lehman N., Pfrender M.E., Morin P.A., Crease T.J., Lynch M.; RT "A hierarchical molecular phylogeny within the genus Daphnia"; RL Unpublished. XX RN [2] RP 1-288 RA Lehman N.; RT ; RL Submitted (22-AUG-1994) to the EMBL/GenBank/DDBJ databases. RL Niles Lehman, Department of Biology, University of Oregon, Klamath RL Hall, Eugene, OR 97403, USA XX CC NCBI gi: 535580 XX FH Key Location/Qualifiers FH FT source 1..288 FT /organism="Daphnia obtusa" FT /isolate="TEP 92-58" FT /mitochondrion FT rRNA <1..>288 FT /product="12S ribosomal RNA" XX SQ Sequence 288 BP; 99 A; 56 C; 43 G; 90 T; 0 other; BASE COUNT 90 a 43 c 56 g 99 t 4925 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~--~- -~~~-~-~~~ 721 -~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~(~~~~~-~ ~~~)~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~~~~~| 1561 ~|-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~~~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| --~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~-~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ 2701 ~~~|-~~|~~ ~~~~~~-~~G UAAAAGA(-- ---ug-u)UC UUC--AAACC CAAAGAUU-U 2761 UG|GCGGCA- UCUUAU--CC UA-AUAGA|G GAGCUUGC-C |CUAUA--AU UG(AUAAUCC 2821 U--------- ----)CAUUU U-AUCUUACC UCCUUUUAUU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC UUG-UA|UA- 3121 |CC|-GC--C |G------UU GU-CA|G-AU UAC-|UUU(A --AAA)GAA- -----(---- 3181 ---)------ --uGUUUUCA AGA-aaau-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----aauu-- 3781 ---------u uuUAUA-CUU C-AGGUCAAG G|UGCA|GUU AAU------- ---------G 3841 G-G-GA-GG- -c-aga--GG -UGAGCUACA AU--uuu--- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua gua--)---- ---------- ---------- ---aaaau-- 4021 ---------- ------ACGA --AUCUU-AG G-c(------ ---------- ---------- 4081 ---------- ---------- uuaaaa---) --AC-C--GG -G--GGAAG- -GUGGAUUUA 4141 U-U--aguaa a-uuuguu(- uaagu-a~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -(~~~---)< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>--~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.pulex 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Daphnia pulex. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Daphnia pulex. ORGANISM Mitochondrion Daphnia pulex. REFERENCE 1 (bases 1 to 15708) AUTHORS Van Raay T.J., Crease T.J. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z15015 ID MIDPCONTR standard; DNA; ORG; 3654 BP. XX AC Z15015; XX DT 31-AUG-1992 (Rel. 33, Created) DT 31-AUG-1992 (Rel. 33, Last updated, Version 1) XX DE D.pulex mitochondrion genes for NADH dehydrogenase subunit 2, DE cytochrome C oxidase subunit I, tRNA-Val, tRNA-Ile, tRNA-Gln, DE tRNA-fMet, tRNA-Trp, tRNA-Cys, tRNA-Tyr, small subunit rRNA, large DE subunit rRNA XX KW cytochrome c oxidase subunit I; NADH dehydrogenase subunit 2; KW ribosomal RNA; ribosomal RNA large subunit; KW ribosomal RNA small subunit; transfer RNA; transfer RNA-Cys; KW transfer RNA-fMet; transfer RNA-Gln; transfer RNA-Ile; KW transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. XX OS Daphnia pulex OC Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Eucladocera; OC Daphniidae. XX OG Mitochondrion XX RN [1] RP 1-3654 RA Van Raay T.J., Crease T.J.; RT "Mitochondrial DNA sequence of the small subunit ribosomal RNA, RT control region, ND2 gene and seven transfer RNA's in the RT crustacean Daphnia pulex"; RL Unpublished. XX RN [2] RP 1-3654 RA Crease T.J.; RT ; RL Submitted (27-AUG-1992) on tape to the EMBL Data Library by: RL Crease T. J., University of Guelph, Department of Zoology, Guelph, RL Ontario, Canada, N1G 2W1 XX CC *source: stage=Adult; CC *source: clone=pDPmt6.0 pDPmt3.0; XX FH Key Location/Qualifiers FH FT CDS 1798..2781 FT /codon= (seq: "aga",aa: Ser) /codon= (seq: "tga", FT aa: Trp) /codon= (seq: "ata",aa: Met) /product= FT "NADH dehydrogenase subunit 2" /standard_name= FT "ND2" /citation= ([1]) FT CDS 2990..>3654 FT /partial /codon_start= 2 /codon= (seq: "atta",aa: FT Ile) /product= "cytochrome C oxidase subunit I" FT /standard_name= "CO I" /citation= ([1]) FT tRNA complement (90..159) FT /product= "tRNA-Val" /anticodon= (pos: 126 .. 128, FT aa: Val) /citation= ([1]) FT tRNA 1601..1664 FT /product= "tRNA-Ile" /anticodon= (pos: 1629 .. FT 1631,aa: Ile) /citation= ([1]) FT tRNA complement (1666..1733) FT /product= "tRNA-Gln" /anticodon= (pos: 1694 .. FT 1696,aa: Gln) /citation= ([1]) FT tRNA 1734..1797 FT /product= "tRNA-fMet" /anticodon= (pos: 1765 .. FT 1767,aa: Met) /citation= ([1]) FT tRNA 2780..2845 FT /product= "tRNA-Trp" /anticodon= (pos: 2810 .. FT 2812,aa: Trp) /citation= ([1]) FT tRNA complement (2847..2910) FT /product= "tRNA-Cys" /anticodon= (pos: 2877 .. FT 2879,aa: Cys) /citation= ([1]) FT tRNA complement (2922..2984) FT /product= "tRNA-Tyr" /anticodon= (pos: 2941 .. FT 2943,aa: Tyr) /citation= ([1]) FT repeat_unit 1113..1141 FT /rpt_type= DIRECT /note= "Repeat1 located in the FT control region" /citation= ([1]) FT repeat_unit 1163..1191 FT /rpt_type= DIRECT /note= "repeat2 located 22bp FT downstream of repeat1 in the control region" FT /citation= ([1]) FT stem_loop 1452..1513 FT /function= "Second strand synthesis initiator" FT /standard_name= "hairpin" /citation= ([1]) FT promoter 1073..1120 FT /function= "putative transcriptional promoter" FT /phenotype= "T-rich" /citation= ([1]) FT rRNA complement (161..911) FT /product= "small subunit ribosomal RNA" /citation= FT ([1]) FT rRNA complement (1..88) FT /partial /product= "large subunit ribosomal RNA" FT /citation= ([1]) FT misc_structure 912..1600 FT /function= "Control Region" /label= ControlRegion FT /note= "The putative control region of the FT mitochondrial genome containing the origin of FT replication and transcriptional promotors." FT /citation= ([1]) XX SQ Sequence 3654 BP; 1024 A; 719 C; 628 G; 1280 T; 3 other; BASE COUNT 258 a 97 c 151 g 245 t 4462 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- --------uu agggaAAGUU 661 (UGA-)A-UC U|GGCUU--U GGC-UCUAUU -U-UGAG-UU |AA-AU--C- -UAU-A-UAU 721 -AAA------ -----|---- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- ---------- ---------- -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- -caggggauu 1141 uaaauaaaac aauaa----- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- |--------- ---------- 1321 ---------- -----(---- ---------- ---------- ---------- ------)--- 1381 -----|---- ---------- -|-------- --|------- (------)-- ---------| 1441 ---------- --(------- ---)------ -|-------( -----)---- ---------- 1501 GUA|GUA-gu aaguuuuagg a-aacaa--( ---------- ----auau)- -uugggccu| 1561 a|-gUU--aA AC-UCAua-- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAAUU|-GAC 1921 -UAA-A---A UCGU-G(-CC AGCCGUC-GC -GGU-UA)-G ACGAAG|--- -AAU-UUU-- 1981 AGUAG-AGUA A--------a aguuuu|guu -uaguuaaca ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --uucgaucu -cguaa---- -aagau--gg -----|ugaa auuuug-uug ---AUAAG(G 2341 UGAAA)UUU- -------uua auuu-aaggg aaa------- --------u- -ucu(-uaag 2401 -)aa|a---- ----ucuguu gagac----- ---------- --------cu aaaaa-aUUU 2461 A-GGU---AA AAAACCAGG( AUUAGAUAC) CCUG-UUAU| --UCU-AAA- ua-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---auagu-- ---------- 2701 ---|-gu|aa auAGGG-UAG UAAAAGU(-- ---ug-u)UC UUC--AAACC CAAAGAUU-U 2761 UG|GCGGCA- UCUUAU--CC UA-AUAGA|G GAGCUUGU-C |C-AUA--AU UG(AUAGUCC 2821 C--------- ----)CAUUU U-AUCUUACC CUUUUUUGUU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---A---AGC -UG-UA|UA- 3121 |CC|-GC--C |G------UU GU-CA|G--U UAC-|UUU(A --AAA)GAA- -----(---- 3181 ---)------ --cGUUUUCA GGA-aaaa-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uauu-- 3781 ---------u uuCUUA-CUU C-AGGUCAAG G|UGCA|GUU UAU------- ---------A 3841 A-A-AG-GG- -c-aGU--GA -UGAGCUACA AU--uuu--- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a aua--)---- ---------- ---------- ---gaaau-- 4021 ---------- ------ACGG --AUUUU-AG C--(------ ---------- ---------- 4081 ---------- ---------- uuaaaa---) --CU-C--AG -G--UGAAG- -GUGGAUUUA 4141 U-U--AGUAA A-UUUACU(- uaagu-ac-- --)AGUAAGU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GGCA 4261 AUAGGA-UG- UGCACAUA-U -CGCCCGUCA C-UCU-cUUC Uc-------- ---------- 4321 ---------- ---------- ---------- ---------- -(aaa---)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------g AGGA-AGA-U AAGUCGUAAC AAGGUAGA-U GUA-CU(GGA 4621 -A)AGU-GC- AUCUAGAAUG A--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.D.pulic 5213 bp RNA RNA 11-JAN-191 DEFINITION Daphnia pulicaria mitochondria. ACCESSION No information KEYWORDS No information. SOURCE Daphnia pulicaria mitochondria. ORGANISM Daphnia pulicaria mitochondria. REFERENCE 1 (bases 1 to 15708) AUTHORS Lehman N., Pfrender M.E., Morin P.A., Crease T.J., Lynch M. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U13905 ID MIDPPU131 standard; DNA; ORG; 288 BP. XX AC U13905; XX DT 25-NOV-1994 (Rel. 41, Created) DT 25-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE Daphnia pulicaria isolate Mendota 24 mitochondrion 12S ribosomal DE RNA gene, partial sequence. XX KW . XX OS Daphnia pulicaria OC Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Eucladocera; OC Daphniidae. XX OG Mitochondrion XX RN [1] RP 1-288 RA Lehman N., Pfrender M.E., Morin P.A., Crease T.J., Lynch M.; RT "A hierarchical molecular phylogeny within the genus Daphnia"; RL Unpublished. XX RN [2] RP 1-288 RA Lehman N.; RT ; RL Submitted (22-AUG-1994) to the EMBL/GenBank/DDBJ databases. RL Niles Lehman, Department of Biology, University of Oregon, Klamath RL Hall, Eugene, OR 97403, USA XX CC NCBI gi: 535575 XX FH Key Location/Qualifiers FH FT source 1..288 FT /organism="Daphnia pulicaria" FT /isolate="Mendota 24" FT /mitochondrion FT rRNA <1..>288 FT /product="12S ribosomal RNA" XX SQ Sequence 288 BP; 104 A; 54 C; 43 G; 87 T; 0 other; BASE COUNT 87 a 43 c 54 g 104 t 4925 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~--~- -~~~-~-~~~ 721 -~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~(~~~~~-~ ~~~)~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~~~~~| 1561 ~|-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~~~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| --~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~-~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ 2701 ~~~|-~~|~~ ~~~~~~-~~G UAAAAGU(-- ---ug-u)UC UUC--AAACC CAAAGAUU-U 2761 UG|GCGGCA- UCUUAU--CC UA-AUAGA|G GAGCUUGU-C |CUAUA--AU UG(AUAGUCC 2821 C--------- ----)CAUUU U-AUCUUACC CUUUUUUGUU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---A---AGC UUG-UA|UA- 3121 |CC|-GC--C |G------UU GU-CA|G-AU UAC-|UUU(A --AAA)GAA- -----(---- 3181 ---)------ --cGUUUUCA GGA-aaaa-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uauu-- 3781 ---------u uuCUUA-CUU C-AGGUCAAG G|UGCA|GUU UAU------- ---------A 3841 G-A-AG-GG- -c-agu--GA -UGAGCUACA AU--uuu--- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua aua--)---- ---------- ---------- ---gaaau-- 4021 ---------- ------ACGG --AUUUU-AG G-c(------ ---------- ---------- 4081 ---------- ---------- uuaaaa---) --CU-C--AG -G--UGAAG- -GUGGAUUUA 4141 U-U--aguaa a-uuuacu(- uaagu-a~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -(~~~---)< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>--~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Daph.sp 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Daphnia sp. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Daphnia sp. ORGANISM Mitochondrion Daphnia sp. REFERENCE 1 (bases 1 to 15708) AUTHORS Lehman N., Pfrender M.E., Morin P.A., Crease T.J., Lynch M. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U13901 ID MIDSSU139 standard; DNA; ORG; 288 BP. XX AC U13901; XX DT 25-NOV-1994 (Rel. 41, Created) DT 25-NOV-1994 (Rel. 41, Last updated, Version 1) XX DE Daphnia sp. isolate Valley AMA-165 mitochondrion 12S ribosomal RNA DE gene, partial sequence. XX KW . XX OS Daphnia sp. OC Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Eucladocera; OC Daphniidae. XX OG Mitochondrion XX RN [1] RP 1-288 RA Lehman N., Pfrender M.E., Morin P.A., Crease T.J., Lynch M.; RT "A hierarchical molecular phylogeny within the genus Daphnia"; RL Unpublished. XX RN [2] RP 1-288 RA Lehman N.; RT ; RL Submitted (22-AUG-1994) to the EMBL/GenBank/DDBJ databases. RL Niles Lehman, Department of Biology, University of Oregon, Klamath RL Hall, Eugene, OR 97403, USA XX CC NCBI gi: 535571 XX FH Key Location/Qualifiers FH FT source 1..288 FT /organism="Daphnia sp." FT /isolate="Valley AMA-165" FT /mitochondrion FT rRNA <1..>288 FT /product="12S ribosomal RNA" XX SQ Sequence 288 BP; 105 A; 53 C; 42 G; 88 T; 0 other; BASE COUNT 88 a 42 c 53 g 105 t 4925 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~--~- -~~~-~-~~~ 721 -~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~(~~~~~-~ ~~~)~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~~~~~| 1561 ~|-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~~~~~ ----~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| --~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~-~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ 2701 ~~~|-~~|~~ ~~~~~~-~~G UAAAAGU(-- ---ug-u)UC UUC--AAACC CAAAGAUU-U 2761 UG|GCGGCA- UCUUAU--CC UA-AUAGA|G GAGCUUGU-C |CUAUA--AU UG(AUAGUCC 2821 C--------- ----)CAUUU U-AUCUUACC CUUUUUUGUU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---A---AGC UUG-UA|UA- 3121 |CC|-GC--C |G------UU GU-CA|G-AU UAC-|UUU(A --AAA)GAA- -----(---- 3181 ---)------ --cGUUUUCA GGA-aaaa-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uauu-- 3781 ---------u uuCUUA-CUU C-AGGUCAAG G|UGCA|GUU UAU------- ---------A 3841 A-A-AG-GG- -c-agu--GA -UGAGCUACA AU--uuu--- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua aua--)---- ---------- ---------- ---gaaau-- 4021 ---------- ------AUGG --AUUUU-AG G-c(------ ---------- ---------- 4081 ---------- ---------- uuaaaa---) --CU-C--AG -G--UGAAG- -GUGGAUUUA 4141 U-U--aguaa a-uuuacu(- uaagu-a~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~- ~~~~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -(~~~---)< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~-~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>--~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.notia 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Penaeus notialis. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Penaeus notialis. ORGANISM Mitochondrion Penaeus notialis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X84357 LOCUS MTPNID8 2388 bp DNA UNA 27-NOV-1995 DEFINITION P.notialis mitochondrial ND2 gene, 5'end. ACCESSION X84357 KEYWORDS fMet-tRNA; Gln-tRNA; Ile-tRNA; lrRNA; ND2 gene; srRNA; Val-tRNA. SOURCE Penaeus notialis. ORGANISM Mitochondrion Penaeus notialis Eukaryota; Animalia; Metazoa; Arthropoda; Crustacea; Malacostraca; Eucarida; Decapoda; Dendrobranchiata; Penaeoidea; Penaeidae. REFERENCE 1 (bases 1 to 2388) AUTHORS Garcia-Machado,E., Dennebouy,N., Oliva-Suarez,M., Mounolou,J.C. and Monnerot,M. TITLE Partial sequencing of the shrimp Penaeus notialis mitochondrial genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 2388) AUTHORS Monnerot,M. TITLE Direct Submission JOURNAL Submitted (02-FEB-1995) M. Monnerot, Centre de Genetique Moleculaire, CNRS, 91198 Gif-sur-Yvette, Cedex, FRANCE COMMENT NCBI gi: 1085090 FEATURES Location/Qualifiers source 1..2388 /organism="Penaeus notialis" /mitochondrion /dev_stage="adult" /tissue_type="muscle" CDS complement(<1..>195) /gene="ND2" /note="att putative start cocon; pid:e137896; NCBI gi: 1085091" /codon_start=3 /transl_table=5 /translation="PLSSSQILFFSTLMLGTTLSISSSSWFGAWMGLELNLLSFIPLI SSKNNQYSSEAALKYFLIQA" tRNA 197..265 /gene="fMet-tRNA" tRNA 290..359 /gene="Gln-tRNA" tRNA complement(376..442) /gene="Ile-tRNA" rRNA 1426..2283 /gene="S-rRNA" tRNA 2284..2356 /gene="Val-tRNA" rRNA 2357..>2388 /gene="L-rRNA" BASE COUNT 899 a 275 c 407 g 807 t ORIGIN BASE COUNT 304 a 105 c 176 g 273 t 4355 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uaaAAGUU 661 (UUA-)U-CC U|AGCUG-GU UCU-UUCAUU -a-uUAG-GU |UA-AU--gg -CAC-A-UGU 721 -AAA------ -----|---- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- -auuuaauga gccaau--gu a-auu-uaua --ca-ag-cu agaggaguau 1021 -------gaa uua-----ga aa------ga ggu------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- aggggccucc guugaauagu aaaguc---- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- |--------- ---------- 1321 ---------- -----(---- ---------- ---------- ---------- ------)--- 1381 -----|---- ---------- -|-------- --|------- (------)-- ---------| 1441 ---------- --(------- ---)------ -|-------( -----)---- ---------- 1501 uCA|GUG-CC UGGUACUAAU uaAAUAAAU( ---------- ----GUAA)G UUGGA-AUU| 1561 G|-AUG--AU CC-UAAuaac a--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- CACCU|-GGC 1921 -UAAaa---U UUGU-G(-CC AGCAGCC-GC -GGU-UA)-U ACUGAG|--- -AGG-UGG-- 1981 AUUGA-AAGA A--------a guuGGU|ua- -aaaauaguu ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ------a-aa 2281 uguuaaugac -uaagaacu- --uuuu--ag ---ag|GUUU GUACCG-AUA ----AAGG(G 2341 UGAAA)UCa- -------auu uuuu-gguau -ac------- --aaaaaucu -aauauuuuu 2401 ag--|----- ----uugaaa uugaag---- ---------- --------CU AUUAA-AAUA 2461 A-AGG---AA UGAACCAGG( AUUAGAUAC) CCUG-UUAC| -aCUU-UAU- g--------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- uaa(auua)u aa-------- 2701 c-a|-uu|AC C-UGGGuauu aaacagu(-- aauug-u)-c uug--AAACU CAAAGGAU-U 2761 UG|GCGGUA- AUUUAG--UC UAUUUAGA|G GAACCUGU-C |CUGUA--AU CG(AUAGUCC 2821 A--------- ---A)CGAGA AAAUCUUACU UUGUCUGGUA ---------- ---------- 2881 (--ga---aa a--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGU UUG-UA|UA- 3121 |CC|-GU--C |A------UU AU-UA|G-AU AAC-|UUU(A --AUA)AAAU -----(-au- 3181 a--)------ A-AGUUGUUG CAA-Gaguuu ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---------- 3781 -------A-G CUAAUA-UAU U-AGAUCAAG G|UGCA|GCU UAU------- ---------G 3841 A-uaAA-GG- -A-AGA--GA -UGGGUUACA AU--aug--- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ac aaa--)---- ---------- ---------- ----uauaa- 4021 ---------- ------ACGG --AGUAA-UA A-G(------ ---------- ---------- 4081 ---------- ---------- UGAAUa---) C-UU-G--UU -GC-UGAAG- -GUGGAUUUA 4141 A-A--AGUAA G-AAGAUU(- uuaau-aa-- --)GAUCUUU U-GAC----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UCU--AGCU 4261 CUAGGU-UA- UGUACACA-U -CGCCCGUCG C-UCU--CGU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(aauuaa)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- AGCG-AGA-U AAGUCGUAAC AUAGUAGG-U GUA-CU(GGA 4621 -A)AGU-GU- ACCUAGAAAU ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (10)-Trach 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (11)-Hexap 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (12)-Insec 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.D.viril 5213 bp RNA RNA 11-JAN-191 DEFINITION Drosophila virilis mitochondrial SSU rRNA. ACCESSION No information KEYWORDS No information. SOURCE Drosophila virilis mitochondrial SSU rRNA. ORGANISM Drosophila virilis mitochondrial SSU rRNA. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X05914 BASE COUNT 309 a 60 c 108 g 307 t 4429 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --auaAAGUU 661 (UUA-)U-UU U|GGCUU-AA AAG-UUUGUU -A-UUAA-UU |UG-AU--U- -UAU-A-UGU 721 -AAa------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|u uuu----ugu gugaa----- -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ------u|au uuaauaauuu (aaa)aaauu 1141 auuaaa---- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- |--------- ---------- 1321 ---------- -----(---- ---------- ---------- ---------- ------)--- 1381 -----|---- ---------- -|-------- --|------- (------)-- -------uuu 1441 auuauaauc- ---------- ---------- -|-------( -----)---- ---------- 1501 GCA|GUA-AU UAAUUUUAUU --AGUUAAA( ---------- ----GAAA)U UUAGA-AAU| 1561 A|-GCA--AU AU-UAAaga- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GUAUA|-GAU 1921 -UAA-A---U UGGU-G(-CC AGCAAUC-GC -GGU-UA)-C ACCAAU|--- -UAU-ACA-- 1981 AAUGA-AUUU U--------- uuuAGU|aa- -aaguuaaau ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ---ugguuua auuuaa--au -----|AUAA UUAAAU-UUA ----UUAA(G 2341 UGAAA)UUU- --------uA AAUU-UAAaa u--------- -------uuu --ua(-uuaa 2401 g)ug|aau-- -----aauug aaa------- ---------- --------cu ugaaa-aUUU 2461 U-AAA---UA AAAACUAGG( AUUAGAUAC) CCUA-UUAU| --UUA-AAA- ug-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaau)a u--------- 2701 a-a|-au|AC U-UAAG-UAG UAAUAGU(-- -uaag-u)UC UUG--AAACU UAAAAAAU-U 2761 UG|GCGGUA- UUUUAG--UC UAUCCAGA|G GAACCUGU-U |UUGUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUG G-ACCUUACU UAAGUUUGUA ---------- ---------- 2881 (--au---c- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------AGU UUA-UA|UA- 3121 |CC|-GU--C |G------UU AU-CA|G-AA UAU-|UUU(A --UAA)GAA- -----(uau- 3181 ---)------ u-aAUAUUCa aua-auuuu- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uauu- 3781 -------a-a aaUUUA-UAU C-AGAUCAAG G|UGUA|GCU UAU------- ---------A 3841 U-U-UA-AG- -U-AAU--AA -UGGGUUACA AU--aa---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au uua--)---- ---------- ---------- ----uuuaa- 4021 ---------- ------ACGG --AUAAA-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) A-AA-U--UU -U--UGAAG- -GUGGAUUUG 4141 G-U--AGUAA A-AUUAUA(- -aaga-uu-- --)AAUAAUU U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--AGCU 4261 CUAAAA-UA- UGUACACA-U -CGCCCGUCG C-UCU--UAU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(auuaa-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- GGUA-AGA-U AAGUCGUAAC AUAGUAGA-U GUA-CU(GGA 4621 -A)AGU-GU- AUCUAGAAUG A--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.D.mel.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Drosophila melanogaster. ACCESSION No information KEYWORDS No information. SOURCE Drosophila melanogaster. ORGANISM Drosophila melanogaster. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U37541 LOCUS DMU37541 19517 bp DNA INV 26-JAN-1996 DEFINITION Drosophila melanogaster mitochondrial genome, complete sequence. ACCESSION U37541 NID g1166529 KEYWORDS A+T-rich region; ATPase; circular; complete genome; cytochrome b; cytochrome c; cytochrome c oxidase; mitochondrial DNA; NADH dehydrogenase; ribosomal RNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val. SOURCE Drosophila melanogaster. ORGANISM Mitochondrion Drosophila melanogaster Eukaryotae; mitochondrial eukaryotes; Metazoa; Arthropoda; Tracheata; Insecta; Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 408; 13319 to 19517) AUTHORS Lewis,D.L., Farr,C.L. and Kaguni,L.S. TITLE Drosophila melanogaster mitochondrial DNA: Completion of the nucleotide sequence and evolutionary comparsions JOURNAL Insect Mol. Biol. 4 (4), 263-278 (1995) REFERENCE 2 (bases 404 to 5272) AUTHORS de Bruijn,M.H. TITLE Drosophila melanogaster mitochondrial DNA, a novel organization and genetic code JOURNAL Nature 304 (5923), 234-241 (1983) MEDLINE 83245048 REFERENCE 3 (bases 5269 to 5695) AUTHORS Clary,D.O., Wahleithner,J.A. and Wolstenholme,D.R. TITLE Transfer RNA genes in Drosophila mitochondrial DNA: related 5' flanking sequences and comparisons to mammalian mitochondrial tRNA genes JOURNAL Nucleic Acids Res. 11 (8), 2411-2425 (1983) MEDLINE 83220794 REFERENCE 4 (bases 12511 to 12682) AUTHORS Clary,D.O., Goddard,J.M., Martin,S.C., Fauron,C.M. and Wolstenholme,D.R. TITLE Drosophila mitochondrial DNA: a novel gene order JOURNAL Nucleic Acids Res. 10 (21), 6619-6637 (1982) MEDLINE 83090428 REFERENCE 5 (bases 804 to 1778) AUTHORS Satta,Y., Ishiwa,H. and Chigusa,S.I. TITLE Analysis of nucleotide substitutions of mitochondrial DNAs in Drosophila melanogaster and its sibling species JOURNAL Mol. Biol. Evol. 4 (6), 638-650 (1987) MEDLINE 88174373 REFERENCE 6 (bases 441 to 2967) AUTHORS Satta,Y. and Takahata,N. TITLE Evolution of Drosophila mitochondrial DNA and the history of the melanogaster subgroup JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87 (24), 9558-9562 (1990) MEDLINE 91088557 REFERENCE 7 (bases 5268 to 13619) AUTHORS Garesse,R. TITLE Drosophila melanogaster mitochondrial DNA: gene organization and evolutionary considerations JOURNAL Genetics 118 (4), 649-663 (1988) MEDLINE 88212147 REFERENCE 8 (bases 14215 to 14512) AUTHORS Ballard,J.W., Olsen,G.J., Faith,D.P., Odgers,W.A., Rowell,D.M. and Atkinson,P.W. TITLE Evidence from 12S ribosomal RNA sequences that onychophorans are modified arthropods JOURNAL Science 258 (5086), 1345-1348 (1992) MEDLINE 93088057 REFERENCE 9 (bases 14917 to 19517) AUTHORS Lewis,D.L., Farr,C.L., Farquhar,A.L. and Kaguni,L.S. TITLE Sequence, organization, and evolution of the A+T region of Drosophila melanogaster mitochondrial DNA JOURNAL Mol. Biol. Evol. 11 (3), 523-538 (1994) MEDLINE 94285822 REFERENCE 10 (bases 1 to 19517) AUTHORS Lewis,D.L., Farr,C.L. and Kaguni,L.S. TITLE Direct Submission JOURNAL Submitted (03-OCT-1995) Laurie S. Kaguni, Biochemistry Department, Michigan State University, East Lansing, MI 48824-1319, USA COMMENT NCBI gi: 1166529 FEATURES Location/Qualifiers source 1..19517 /organism="Drosophila melanogaster" /mitochondrion /note="derived from new and previously submitted sequences; sequence is a composite containing sequences obtained from different Drosophila melanogaster strains" tRNA 1..65 /product="tRNA-Ile (GAU)" tRNA complement(97..165) /product="tRNA-Gln (UUG)" tRNA 171..239 /product="tRNA-f-met (CAU)" CDS 240..1265 /note="NCBI gi: 1166530" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 2" /db_xref="PID:g1166530" /translation="MFNNSSKILFITIMIIGTLITVTSNSWLGAWMGLEINLLSFIPL LSDNNNLMSTEASLKYFLTQVLASTVLLFSSILLMLKNNMNNEINESFTSMIIMSALL LKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLISYLNIKYLLLISVILSVII GAIGGLNQTSLRKLMAFSSINHLGWMLSSLMISESIWLILFFFYSFLSFVLTFMFNIF KLFHLNQLFSWFVNSKILKFTLFMNFLSLGGLPPFLGFLPKWLVIQQLTLCNQYFMLT IMMMSTLITLFFYLRICYSAFMMNYFENNWIMKMNMNSINYNMYMIMTFFSIFGLFLI SLFYFMF" tRNA 1264..1329 /product="tRNA-Trp (UCA)" tRNA complement(1322..1383) /product="tRNA-Cys (GCA)" tRNA complement(1403..1468) /product="tRNA-Tyr (GUA)" misc_feature 1470..1473 /note="ATAA, putative translation initiation codon for cytochrome c oxidase subunit I" CDS <1474..3009 /note="NCBI gi: 1166531" /codon_start=1 /transl_table=5 /product="cytochrome c oxidase subunit I" /db_xref="PID:g1166531" /translation="SRQWLFSTNHKDIGTLYFIFGAWAGMVGTSLSILIRAELGHPGA LIGDDQIYNVIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMSFWL LPPALSLLLVSSMVENGAGTGWTVYPPLSAGIAHGGASVDLAIFSLHLAGISSILGAV NFITTVINMRSTGISLDRMPLFVWSVVITALLLLLSLPVLAGAITMLLTDRNLNTSFF DPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIISQESGKKETFGSLGMIYAML AIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAVPTGIKIFSWLATLHGTQLSYSP AILWALGFVFLFTVGGLTGVVLANSSVDIILHDTYYVVAHFHYVLSMGAVFAIMAGFI HWYPLFTGLTLNNKWLKSHFIIMFIGVNLTFFPQHFLGLAGMPRRYSDYPDAYTTWNI VSTIGSTISLLGILFFFFIIWESLVSQRQVIYPIQLNSSIEWYQNTPPAEHSYSELPL LTN" tRNA 3012..3077 /product="tRNA-Leu (UAA)" CDS 3083..>3767 /note="incomplete stop codon, requires polyadenylation; NCBI gi: 1166532" /codon_start=1 /transl_table=5 /product="cytochrome c oxidase subunit II" /db_xref="PID:g1166532" /translation="MSTWANLGLQDSASPLMEQLIFFHDHALLILVMITVLVGYLMFM LFFNNYVNRFLLHGQLIEMIWTILPAIILLFIALPSLRLLYLLDEINEPSVTLKSIGH QWYWSYEYSDFNNIEFDSYMIPTNELMTDGFRLLDVDNRVVLPMNSQIRILVTAADVI HSWTVPALGVKVDGTPGRLNQTNFFINRPGLFYGQCSEICGANHSFMPIVIESVPVNY FIKWISSNNS" tRNA 3768..3838 /product="tRNA-Lys (CUU)" tRNA 3840..3906 /product="tRNA-Asp (GUC)" CDS 3907..4068 /note="NCBI gi: 1166533" /codon_start=1 /transl_table=5 /product="ATPase 8" /db_xref="PID:g1166533" /translation="MPQMAPISWLLLFIIFSITFILFCSINYYSYMPNSPKSNELKNI NLNSMNWKW" CDS 4062..4736 /note="NCBI gi: 1166534" /codon_start=1 /transl_table=5 /product="ATPase 6" /db_xref="PID:g1166534" /translation="MMTNLFSVFDPLAIFNFSLNWLSTFLGLLMIPSIYWLMPSRYNI MWNSILLTLHKEFKTLLGPSGHNGSTFIFISLFSLILFNNFMGLFPYIFTSTSHLTLT LSLALPLWLCFMLYGWINHTQHMFAHLVPQGTPAILMPFMVCIETISNIIRPGTLAVR LTANMIAGHLLLTLLGNTGSSMSYMLMTFLLMAQIALLVLESAVAMIQSYVFAVLSTL YSSEVN" CDS 4736..5524 /note="NCBI gi: 1166535" /codon_start=1 /transl_table=5 /product="cytochrome c oxidase subunit III" /db_xref="PID:g1166535" /translation="MSTHSNHPFHLVDYSPWPLTGAIGAMTTVSGMVKWFHQYDISLF VLGNIITILTVYQWWRDVSREGTYQGLHTYAVTIGLRWGMILFILSEVLFFVSFFWAF FHSSLSPAIELGASWPPMGIISFNPFQIPLLNTAILLASGVTVTWAHHSLMENNHSQT TQGLFFTVLLGIYFTILQAYEYIEAPFTIADSIYGSTFFMATGFHGIHVLIGTTFLLV CLLRHLNNHFSKNHHFGFEAAAWYWHFVDVVWLFLYITIYWWGG" tRNA 5543..5607 /product="tRNA-Gly (UCC)" CDS 5608..5961 /note="NCBI gi: 1166536" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 3" /db_xref="PID:g1166536" /translation="MFSIIFIALLILLITTIVMFLASILSKKALIDREKSSPFECGFD PKSSSRLPFSLRFFLITIIFLIFDVEIALILPMIIIMKYSNIMIWTITSIIFILILLI GLYHEWNQGMLNWSN" tRNA 5981..6045 /product="tRNA-Ala (UGC)" tRNA 6055..6118 /product="tRNA-Arg (UCG)" tRNA 6119..6183 /product="tRNA-Asn (GUU)" tRNA 6184..6251 /product="tRNA-Ser (GCU)" tRNA 6252..6318 /product="tRNA-Glu (UUC)" tRNA complement(6337..6401) /product="tRNA-Phe (GUU)" CDS complement(<6401..8124) /note="incomplete stop codon, requires polyadenylation; NCBI gi: 1166537" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 5" /db_xref="PID:g1166537" /translation="MCSISFVNLISMSLSCFLLSLYFLLNDMIYFIEWELVSLNSMSI VMTFLFDWMSLLFMSFVLMISSLVIFYSKEYMMNDNHINRFIMLVLMFVLSMMLLIIS PNLISILLGWDGLGLVSYCLVIYFQNIKSYNAGMLTALSNRIGDVALLLSIAWMLNYG SWNYIFYLEIMQNEFEMLMIGSLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSS TLVTAGVYLLIRFNIILSTSWLGQLMLLLSGLTMFMAGLGANFEFDLKKIIALSTLSQ LGLMMSILSMGFLKLAMFHLLTHALFKALLFMCAGAIIHNMNNSQDIRLMGGLSIGIH MPLTSACFNVSNLALCGMPFLAGFYSKDMILEIVSISNVNMFSFFLYYFSTGLTVSYS FRLVYYSMTGDLNCGSLNMLNDESWIMLRGMMGLLIMSIIGGSMLNWLIFPFPYMICL PIYMKLLTLFVCIVGGLFGYLISLSNLFFLNKSLFMYNLSTFLGSMWFMPYISTYGMI FYPLNYGQLVVKSFDQGWSEYFGGQHLYQKLSMYSKTLFLMHNNSLKIYLLLFVFWIL ILLILLFL" tRNA complement(8140..8205) /product="tRNA-His (GUG)" CDS complement(<8205..9544) /note="incomplete stop codon, requires polyadenylation; NCBI gi: 1166538" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 4" /db_xref="PID:g1166538" /translation="MLKIIFFLLFLIPFCFINNMYWMVQIMMFFISFIFLLMNNFMNY WSEISYFLGCDMLSYGLILLSLWICSLMLLASEMINKHNNYKNLFLLNIIILLLLLIL TFSSMSLFMFYLFFESSLIPTLFLILGWGYQPERLQAGLYLLFYTLLVSLPMLIGIFY VMNKIGSMNFYLMNNFMFNYDLLYFCLLCAFLVKMPMFLVYLWLPKAHVEAPVSGSMI LAGIMLKLGGYGMLRVISFLQLMNLKYSFVWISISLVGGVLVSLVCLRQTDLKALIAY SSVAHMGIVLSGLLTMTYWGLCGSYTLMIAHGLCSSGLFCLANVSYERLGSRSMLINK GLLNFMPSMTLWWFLLSSANMAAPPTLNLLGEISLLNSIVSWSWISMILLSFLSFFSA AYTLYLYSFSQHGKLFSGVYSFSSGKIREYLLMLLHWLPLNLLILKSESFMLWL" CDS complement(9544..9834) /note="NCBI gi: 1166539" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 4L" /db_xref="PID:g1166539" /translation="MIMILYWSLPMILFILGLFCFVSNRKHLLSMLLSLEFIVLMLFF MLFIYLNMLNYESYFSMMFLTFSVCEGALGLSILVSMIRTHGNDYFQSFSIM" tRNA 9837..9902 /product="tRNA-Thr (UGU)" tRNA complement(9903..9963) /product="tRNA-Pro (UGG)" CDS 9970..10494 /note="NCBI gi: 1166540" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 6" /db_xref="PID:g1166540" /translation="MIQLMLYSLIITTSIIFLNMIHPLALGLTLLIQTIFVCLLTGLM TKSFWYSYILFLIFLGGMLVLFIYVTSLASNEMFNLSMKLTLFSSLILIFMLILSFIM DKTSSSLFLMNNDMQSIINMNSYFMENSLSLNKLYNFPTNFITILLMNYLLITLIVIV KITKLFKGPIRMMS" CDS 10498..11634 /note="NCBI gi: 1166541" /codon_start=1 /transl_table=5 /product="cytochrome b" /db_xref="PID:g1166541" /translation="MNKPLRNSHPLFKIANNALVDLPAPINISSWWNFGSLLGLCLII QILTGLFLAMHYTADINLAFYSVNHICRDVNYGWLLRTLHANGASFFFICIYLHVGRG IYYGSYKFTPTWLIGVIILFLVMGTAFMGYVLPWGQMSFWVATVITNLLYAIPYLGMD LVQWLWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHQTGSNNPIGLNSNIDK IPFHPYFTFKDIVGFIVMIFILISLVLISPNLLGDPDNFIPATPLVTPAHIQPEWYFL FAYAILRSIPNKLGGVIALVLSIAILMILPFYNLSKFRGIQFYPINQVMFWSMLVTVI LLTWIGARPVEEPYVLIGQILTVVYFLYYLVNPLITKWWDNLLN" tRNA 11637..11702 /product="tRNA-Ser (UGA)" CDS complement(11720..12658) /note="NCBI gi: 1166542" /codon_start=1 /transl_table=5 /product="NADH dehydrogenase subunit 1" /db_xref="PID:g1166542" /translation="MEFILSLIGSLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKV GLMGIPQPFCDAIKLFTKEQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPFFVKLYSF NLGGLFFLCCTSLGVYTVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALILLSFIFL IGSYNMIYFFFYQVYMWFLIILFPMALVWVSISLAETNRNPFDFAEGESELVSGFNVE YSSGGLALIFMAEYASILFMSMLFCVIFLPCDVFNLLIYMKLTFISFVFIWVRGTLPR FRYDKLMYLAWKCFLSFSLNYLLFFIGFKILLFSLL" tRNA complement(12669..12733) /product="tRNA-Leu (UAG)" rRNA complement(12734..14058) /product="large rRNA" tRNA complement(14058..14130) /product="tRNA-Val (UAC)" rRNA complement(14131..14916) /product="small rRNA" rep_origin 14917..19517 /note="A+T region containing origin of replication" repeat_unit 15566..15938 /note="repeat I-A" repeat_unit 15939..16276 /note="repeat I-B1" repeat_unit 16277..16621 /note="repeat I-C/A" repeat_unit 16622..16959 /note="repeat I-B2" repeat_unit 16960..17304 /note="repeat I-C" misc_feature 17407..17427 /note="deoxythymidylate stretch" repeat_unit 17428..17564 /note="partial repeat" repeat_unit 17565..18028 /note="repeat II-A" repeat_unit 18029..18492 /note="repeat II-B1" repeat_unit 18493..18956 /note="repeat II-B2" repeat_unit 18957..19420 /note="repeat II-C" misc_feature complement(19481..19501) /note="deoxythymidylate stretch" BASE COUNT 8152 a 2003 c 1479 g 7883 t ORIGIN BASE COUNT 321 a 57 c 99 g 309 t 4427 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uuaAAGUU 661 (UUA-)U-UU U|GGCUU-AA AAA-UUUGUU -A-UUAA-UU |UG-AU--U- -UAU-A-UGU 721 -AAa------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|u uuu------u gu-------- -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- -gugauu|uu auauuuauuu (aaa)aaaua 1141 aauaug---- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- |--------- ---------- 1321 ---------- -----(---- ---------- ---------- ---------- ------)--- 1381 -----|---- ---------- -|-------- --|------- (------)-- -------aaa 1441 au-uuauuc- ---------- ---------- -|-------( -----)---- ---------- 1501 GCA|GUA-AU UAAUAUUAUU --AAUUAAA( ---------- ----GAAA)U UUAGA-AAU| 1561 A|-GCA--AU AU-AAAaaa- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GUAUU|-GAC 1921 -UAA-A---U UGGU-G(-CC AGCAGUC-GC -GGU-UA)-U ACCAUU|--- -AAU-ACA-- 1981 AAUAA-AUUU U--------- uuuAGU|au- -uaauuaaau ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u aaauuuauua auaaua--au -----|AAAA UUAAAU-AUA ----UUAA(G 2341 UGAAA)UUU- --------uA UAUU-UAAau u--------- -------auu --au(-auaa 2401 -)aa|aug-- ----uaauug agg------- ---------- --------uu aaaaa-aUUU 2461 U-AAU---AA AAAACUAGG( AUUAGAUAC) CCUA-UUAU| --UUA-AAA- ug-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaau)a a--------- 2701 --a|-uu|GC U-AAAG-UAG UAAUAGU(-- -uaug-u)UC UUG--AAACU UAAAAAAU-U 2761 UG|GCGGUA- UUUUAG--UC UAUCUAGA|G GAACCUGU-U |UUUUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUG G-ACCUUACU UAAAUUUGUA ---------- ---------- 2881 (--au---c- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------AGU UUA-UA|UA- 3121 |CC|-GU--C |G------UU AU-CA|G-AA UAU-|UUU(A --UAA)GAA- -----(uaa- 3181 ---)------ u-aAUAUUCa aua-auuuu- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aaua- 3781 -------a-a aaUUUA-UAU C-AGAUCAAG G|UGUA|GCU UAU------- ---------A 3841 U-U-UA-AG- -U-AAU--AA -UGGGUUACA AU--aa---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au uua--)---- ---------- ---------- ----uuuau- 4021 ---------- ------AUGA --AUAAA-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) A-AA-U--UU -U--UGAAA- -GUGGAUUUA 4141 G-U--AGUAA A-AUUAUA(- -aaga-uu-- --)AAUAAUU U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--AGCU 4261 CUAAAA-UA- UGUACACA-U -CGCCCGUCG C-UCU--UAU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(auuaa-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- GGUA-AGA-U AAGUCGUAAC AUAGUAGA-U GUA-CU(GGA 4621 -A)AGU-GU- AUCUAGAAUG A--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.D.mel.2 5213 bp RNA RNA 08-JAN-1997 DEFINITION Mitochondrion Drosophila melanogaster.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION X97155 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Drosophila melanogaster. ORGANISM Mitochondrion Drosophila melanogaster. REFERENCE 1 (bases 1 to 688) AUTHORS Grapputo,A., Franke,A. and McIntosh,C. Simon,C.M., Nigro,L., Sullivan,J., Holsinger,K., Martin,A., TITLE rate and of 12S ribosomal RNA genes Large differences in substitutional pattern and evolutionary JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 688) AUTHORS Simon,C.M. TITLE Direct Submission JOURNAL Submitted (04-APR-1996) C.M. Simon, Department of Ecology and Evolutionary Biology, U-43, University of Connecticut, Storrs, CT 06268, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X97155 BASE COUNT 285 a 43 c 79 g 281 t 4525 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~U-UU UUA-UUUGUU -A-UUUA-UU |UG-AU--U- -UAaua-UGU 721 -aua------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|u uuu------u gu-------- -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- -gugauu|uu auauuuauuu (aaa)aaaua 1141 aauaug---- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- |--------- ---------- 1321 ---------- -----(---- ---------- ---------- ---------- ------)--- 1381 -----|---- ---------- -|-------- --|------- (------)-- -------aaa 1441 au-uuauuc- ---------- ---------- -|-------( -----)---- ---------- 1501 GCA|GUA-AU UAAUAUUAUU --AAUUAAA( ---------- ----GAAA)U UUAGA-AAU| 1561 A|-GCA--AU AU-AAAaaa- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GUAUU|-GAC 1921 -UAA-A---U UGGU-G(-CC AGCAGUC-GC -GGU-UA)-U ACCAUU|--- -AAU-ACA-- 1981 AAUAA-AUUU U--------- uuuAGU|au- -uaauuaaau ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------u aaauuuauua auaaua--au -----|AAAA UUAAAU-AUA ----UUAA(G 2341 UGAAA)UUU- --------UA UAUU-UAAau u--------- -------auu --au(-auaa 2401 -)aa|aug-- ----uaauug agg------- ---------- --------uu aaaaa-aUUU 2461 U-AAU---AA AAAACUAGG( AUUAGAUAC) CCUA-UUAU| --UUA-AAA- ug-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaau)a a--------- 2701 --a|-uu|GC U-AAAG-UAG UAAUAGU(-- -uaug-u)UC UUG--AAACU UAAAAAAU-U 2761 UG|GCGGUA- UUUUAG--UC UAUCUAGA|G GAACCUGU-U |UUUUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUG G-ACCUUACU UAAAUUUGUA ---------- ---------- 2881 (--au---c- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------AGU UUA-UA|UA- 3121 |CC|-GU--C |G------UU AU-CA|G-AA UAU-|UUU(A --UAA)GAA- -----(uaa- 3181 ---)------ u-aAUAUUCa aua-auuuu- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aaua- 3781 -------a-a aaUUUA-UAU C-AGAUCAAG G|UGUA|GCU UAU------- ---------A 3841 U-U-UA-AG- -U-AAU--AA -UGGGUUACA AU--aa---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au uua--)---- ---------- ---------- ----uuuau- 4021 ---------- ------AUGA --AUAAA-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) A-AA-U--UU -U--UGAAA- -GUGGAUUUA 4141 G-U--AGUAA A-AUUAUA(- -aaga-uu-- --)AAUAAUU U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--AGCU 4261 CUAAAA-UA- UGU~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -(~~~~~~)~ ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.teiss 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Drosophila teissieri. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Drosophila teissieri. ORGANISM Mitochondrion Drosophila teissieri. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X54011 DEFINITION D. teissieri mitochondrial DNA for tRNA-fmet, tRNA-Ile, tRNA-Gln & tRNA-Val SOURCE Mitochondrion Drosophila teissieri DNA. ORGANISM Mitochondrion Drosophila teissieri Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Cyclorrhapha; Schizophora; Drosophiloidea; Drosophilidae. REFERENCE 1 (bases 1 to 2305) AUTHORS Monnerot,M., Solignac,M. and Wolstenholme,D.R. TITLE Discrepency in Divergence of the mitochondrial and nuclear genomes of Drosophila teissieri and Drosophila yakuba JOURNAL J. Mol. Evol. 30, 500-508 (1990) REFERENCE 2 (bases 1 to 2305) AUTHORS Monnerot,M.M. JOURNAL Unpublished (1992) COMMENT See also X05914 & 5 From EMBL entry DTMTRNA; dated 19-FEB-1992. FEATURES Location/Qualifiers CDS <1..164 /product="NADH dehydrogenase subunit 2" /gene="ND2" /codon_start=3 /translation="ASVDIKLLLSLNRGIKDNKLISKPIQAPNQELDVTVINVPIIII VVNKIFDEL" tRNA 170..238 /gene="tRNA-fmet" tRNA 247..315 /gene="tRNA-Gln" tRNA 347..411 /gene="tRNA-Ile" misc_feature 412..1502 /note="A-T rich region" rRNA 1503..2292 /product="small ribosomal RNA" tRNA 2293..>2305 /gene="tRNA-Val" BASE COUNT 319 a 61 c 103 g 307 t 4423 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uuaAAGUU 661 (UUA-)U-UU U|GGCUU-AA AAA-UUUGUU -A-UUAG-UU |UG-AU--U- -UAU-A-UGU 721 -AAa------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|u uuu----ugu gugaau---- -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- -------|uu auauuuauuu (aaa)aaaua 1141 aauaua---- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- |--------- ---------- 1321 ---------- -----(---- ---------- ---------- ---------- ------)--- 1381 -----|---- ---------- -|-------- --|------- (------)-- -uuauaaauu 1441 auuuuacuc- ---------- ---------- -|-------( -----)---- ---------- 1501 GCA|GUA-AU UAAUAUUAUU --AAUUAAA( ---------- ----GAAA)U UUAGA-AAU| 1561 A|-GCA--AU AU-UAAaaa- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GUAUU|-GAC 1921 -CAA-A---U UGGU-G(-CC AGCAGUC-GC -GGU-UA)-U ACCAAU|--- -AAU-ACA-- 1981 AAUAA-AUUU U--------- uuuAGU|au- -gaauuaaau ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- --ugauuuau uuaaaa--au -----|AAAA UUAAAU-AUA ----UUAA(G 2341 UGAAA)UUU- --------uA UAUU-UAAau u--------- -------auu --uu(-auaa 2401 -)aa|uaa-- ----uaauug aag------- ---------- --------uu aaaaa-aUUU 2461 U-AAU---AA AAAACUAGG( AUUAGAUAC) CCUA-UUAU| --UUA-AAA- ug-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaau)a a--------- 2701 --a|-uu|GC U-AAAG-UAG UAAUAGU(-- -uaug-u)UC UUG--AAACU UAAAAAAU-U 2761 UG|GCGGUA- UUUUAG--UC UAUCCAGA|G GAACCUGU-U |UUGUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUG G-ACCUUACU UAAAUUUGUA ---------- ---------- 2881 (--au---c- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------AGU UUA-UA|UA- 3121 |CC|-GU--C |G------UU AU-CA|G-AA UAU-|UUU(A --UAA)GAA- -----(uaa- 3181 ---)------ u-aAUAUUCa aua-auuuu- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aaua- 3781 -------a-a aaUUUA-UAU C-AGAUCAAG G|UGUA|GCU UAU------- ---------A 3841 U-U-UA-AG- -U-AAU--AA -UGGGUUACA AU--aa---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au uua--)---- ---------- ---------- ----uuuaa- 4021 ---------- ------ACGG --AUAAA-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) A-AA-U--UU -U--UGAAG- -GUGGAUUUG 4141 G-U--AGUAA A-AUUAUA(- -aaga-uu-- --)AAUAAUU U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--AGCU 4261 CUAAAA-UA- UGUACACA-U -CGCCCGUCG C-UCU--UAU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(auuaa-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- GGUA-AGA-U AAGUCGUAAC AUAGUAGA-U GUA-CU(GGA 4621 -A)AGU-GU- AUCUAGAAUG A--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.D.yakub 5213 bp RNA RNA 24-JAN-1985 DEFINITION mitochondria,Drosophila yakuba. ACCESSION No information KEYWORDS No information. SOURCE mitochondria,Drosophila yakuba. ORGANISM mitochondria,Drosophila yakuba. REFERENCE 1 (bases 1 to 688) AUTHORS No information JOURNAL June 24 1985 STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5213) Corresponding GenBank entry: X03240,X05915 Phylo:Mitochondria,Animal,Insect,Drosphila BASE COUNT 319 a 60 c 103 g 307 t 4424 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uuaAAGUU 661 (UUA-)U-UU U|GGCUU-AA AAA-UUUGUU -A-UUAG-UU |UG-AU--U- -UAU-A-UGU 721 -AAa------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|u uuu----ugu gugaau---- -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- -------|uu auauuuauuu (aaa)aaaua 1141 aauaua---- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- |--------- ---------- 1321 ---------- -----(---- ---------- ---------- ---------- ------)--- 1381 -----|---- ---------- -|-------- --|------- (------)-- -uuauaaauu 1441 au-uuauuc- ---------- ---------- -|-------( -----)---- ---------- 1501 GCA|GUA-AU UAAUAUUAUU --AAUUAAA( ---------- ----GAAA)U UUAGA-AAU| 1561 A|-GCA--AU AU-UAAaaa- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GUAUU|-GAC 1921 -CAA-A---U UGGU-G(-CC AGCAGUC-GC -GGU-UA)-U ACCAAU|--- -AAU-ACA-- 1981 AAUAA-AUUU U--------- uuuAGU|au- -gaauuaaau ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- --ugauuuau uuaaaa--au -----|AAAA UUAAAU-AUA ----UUAA(G 2341 UGAAA)UUU- --------uA UAUU-UAAau u--------- -------auu --uu(-auaa 2401 -)aa|uaa-- ----uaauug aag------- ---------- --------uu aaaaa-aUUU 2461 U-AAU---AA AAAACUAGG( AUUAGAUAC) CCUA-UUAU| --UUA-AAA- ug-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaau)a a--------- 2701 --a|-uu|GC U-AAAG-UAG UAAUAGU(-- -uaug-u)UC UUG--AAACU UAAAAAAU-U 2761 UG|GCGGUA- UUUUAG--UC UAUCCAGA|G GAACCUGU-U |UUGUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUG G-ACCUUACU UAAAUUUGUA ---------- ---------- 2881 (--au---c- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------AGU UUA-UA|UA- 3121 |CC|-GU--C |G------UU AU-CA|G-AA UAU-|UUU(A --UAA)GAA- -----(uaa- 3181 ---)------ u-aAUAUUCa aua-auuuu- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aaua- 3781 -------a-a aaUUUA-UAU C-AGAUCAAG G|UGUA|GCU UAU------- ---------A 3841 U-U-UA-AG- -U-AAU--AA -UGGGUUACA AU--aa---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au uua--)---- ---------- ---------- ----uuuaa- 4021 ---------- ------ACGG --AUAAA-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) A-AA-U--UU -U--UGAAG- -GUGGAUUUG 4141 G-U--AGUAA A-AUUAUA(- -aaga-uu-- --)AAUAAUU U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--AGCU 4261 CUAAAA-UA- UGUACACA-U -CGCCCGUCG C-UCU--UAU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(auuaa-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- GGUA-AGA-U AAGUCGUAAC AUAGUAGA-U GUA-CU(GGA 4621 -A)AGU-GU- AUCUAGAAUG A--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.D.bifas 5213 bp RNA RNA 08-JAN-1997 DEFINITION Mitochondrion Drosophila bifasciata.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION X97152 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Drosophila bifasciata. ORGANISM Mitochondrion Drosophila bifasciata. REFERENCE 1 (bases 1 to 686) AUTHORS Simon,C.M., Nigro,L., Sullivan,J., Holsinger,K., Martin,A., Grapputo,A., Franke,A. and McIntosh,C. TITLE Large differences in substitutional pattern and evolutionary rate and of 12S ribosomal RNA genes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 686) AUTHORS Simon,C.M. TITLE Direct Submission JOURNAL Submitted (04-APR-1996) C.M. Simon, Department of Ecology and Evolutionary Biology, U-43, University of Connecticut, Storrs, CT 06268, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X97152 BASE COUNT 275 a 47 c 88 g 276 t 4527 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~~AA AAA-UUUAUU -A-UUAA-UU |UG-AU--U- -UAU-A-UGU 721 -AAA------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|a uuu----uuu gu-------- -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- -augaau|au acauuuauuu (uaa)aaaua 1141 uuugua---- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- |--------- ---------- 1321 ---------- -----(---- ---------- ---------- ---------- ------)--- 1381 -----|---- ---------- -|-------- --|------- (------)-- ------guau 1441 au-uuauuc- ---------- ---------- -|-------( -----)---- ---------- 1501 GCA|GUA-AU UAAUAUUAUU --AAUUAAA( ---------- ----GAAA)U UUAGA-AAU| 1561 A|-GCA--AU AU-UAAaga- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GUAUU|-GAC 1921 -UAA-A---U UGGU-G(-CC AGCAGUC-GC -GGU-UA)-U ACUAAU|--- -AAU-ACA-- 1981 AAUAA-AUUU U--------- uuuAGC|ag- -uaguuaaau ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ---uga-uuu uuuaaa--au -----|AAAA UUGAAU-UUA ----UUAA(G 2341 UGAAA)UUU- --------UA UAUU-CAAaa u--------- -------auu --uu(-ugua 2401 -)aa|aaa-- ----uaauug aag------- ---------- --------cu aaaaa-aUUU 2461 U-UGU---AA AAAACUAGG( AUUAGAUAC) CCUA-UUAU| --UUA-AAA- ug-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aguu)a u--------- 2701 u-a|-au|GU U-uAAG-UAG UAAUAGU(-- -uaug-u)UC UUG--AAACU UAAAAAAA-U 2761 UU|GGCGGU- AUUUUa-gUC UAUCCAGA|G GAACCUGU-U |UUGUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUG G-ACCUUACU UAAAUUUGUA ---------- ---------- 2881 (--au---c- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------AGU UUA-UA|UA- 3121 |CC|-GU--C |G------UU AU-CA|G-AA UAU-|UUU(A --UAA)GAA- -----(uaa- 3181 ---)------ u-aAUAUUCa aua-auuuu- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uaua- 3781 -------a-a aaUUUA-UAU C-AGAUCAAG G|UGUA|GCU UAU------- ---------A 3841 U-U-UA-AG- -U-AAU--AA -UGGGUUACA AU--aa---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa uua--)---- ---------- ---------- ----uuuau- 4021 ---------- ------ACGG --AUAAA-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) A-AA-U--UU -U--UGAAG- -GUGGAUUUG 4141 G-U--AGUAA A-AUUAUA(- -aaga-uu-- --)AAUAAUU U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--AGCU 4261 CUAAAA-UA- UGU~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -(~~~~~~)~ ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.subsi 5213 bp RNA RNA 08-JAN-1997 DEFINITION Mitochondrion Drosophila subsilvestris.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION X97153 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Drosophila subsilvestris. ORGANISM Mitochondrion Drosophila subsilvestris. REFERENCE 1 (bases 1 to 665) AUTHORS Grapputo,A., Franke,A. and McIntosh,C. Simon,C.M., Nigro,L., Sullivan,J., Holsinger,K., Martin,A., TITLE rate and of 12S ribosomal RNA genes Large differences in substitutional pattern and evolutionary JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 665) AUTHORS Simon,C.M. TITLE Direct Submission JOURNAL Submitted (04-APR-1996) C.M. Simon, Department of Ecology and Evolutionary Biology, U-43, University of Connecticut, Storrs, CT 06268, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X97153 BASE COUNT 264 a 50 c 83 g 268 t 4548 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~G-AU--U- -UAU-A-U-A 721 -AAA------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|u uuu-----uu gu-------- -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- -augaau|au auauuuauuu (uaa)agaua 1141 uuuaua---- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- |--------- ---------- 1321 ---------- -----(---- ---------- ---------- ---------- ------)--- 1381 -----|---- ---------- -|-------- --|------- (------)-- ------auuu 1441 au-uuauuc- ---------- ---------- -|-------( -----)---- ---------- 1501 GCA|GUA-AU UAAUAUUAUU --AAUUAAA( ---------- ----GAAA)U UUAGA-AAU| 1561 A|-GCA--AU AU-UAAaga- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GUACU|-GAC 1921 -CAA-A---U UGGU-G(-CC AGCAGUC-GC -GGU-UA)-U ACUAAU|--- -AGU-ACA-- 1981 AAUAA-AUUU U--------- uuuAGU|ag- -uaguuaaau ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ---uuuuuuu auuaaa--au -----|AAAA UUGAAU-UUA ----UUAA(G 2341 UGAAA)UUU- --------UA UAUU-CAAaa u--------- -------auu --uu(-uauu 2401 -)aa|uaa-- ----uaauug aaa------- ---------- --------cu aaaaa-aUUU 2461 U-UGU---AA AAAACUAGG( AUUAGAUAC) CCUA-UUAU| --UUA-AAA- ug-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aguu)a u--------- 2701 u-u|-au|AC U-AAAG-UAG UAAUAGU(-- -uaug-u)UC UUC--AAACU UAAAAAAU-U 2761 UG|GCGGUA- UUUUAG--UC UAUCCAGA|G GAACCUGU-U |UUGUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUG G-ACCUUACU UAAGUUUGUA ---------- ---------- 2881 (--au---c- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------AGU UUA-UA|UA- 3121 |CC|-GU--C |G------UU AU-CA|G-AA UAU-|UUU(A --UAA)GAA- -----(caa- 3181 ---)------ u-aAUAUUCa aua-auuuu- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uaua- 3781 -------a-g aaUUUA-UAU C-AGAUCAAG G|UGUA|GCU UAU------- ---------A 3841 U-U-UA-AG- -U-AAU--AA -UGGGUUACA AU--aa---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa uua--)---- ---------- ---------- ----uuuau- 4021 ---------- ------ACGA --AUAAA-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) A-AA-U--UU -U--UGAAG- -GUGGAUUUG 4141 G-U--AGUAA A-AUUAUA(- -aaga-uu-- --)AAUAAUU U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--AGCU 4261 CUAAAA-UA- UGU~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -(~~~~~~)~ ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.D.willi 5213 bp RNA RNA 08-JAN-1997 DEFINITION Mitochondrion Drosophila willistoni.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION X97154 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Drosophila willistoni. ORGANISM Mitochondrion Drosophila willistoni. REFERENCE 1 (bases 1 to 665) AUTHORS Grapputo,A., Franke,A. and McIntosh,C. Simon,C.M., Nigro,L., Sullivan,J., Holsinger,K., Martin,A., TITLE rate and of 12S ribosomal RNA genes Large differences in substitutional pattern and evolutionary JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 665) AUTHORS Simon,C.M. TITLE Direct Submission JOURNAL Submitted (04-APR-1996) C.M. Simon, Department of Ecology and Evolutionary Biology, U-43, University of Connecticut, Storrs, CT 06268, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X97154 BASE COUNT 284 a 48 c 81 g 252 t 4548 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~U--U- -UAU-A-UGA 721 -AAA------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|u uu------uu guau------ -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---gaau|uu guauuuauuu (aaa)aaaua 1141 aauaua---- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- |--------- ---------- 1321 ---------- -----(---- ---------- ---------- ---------- ------)--- 1381 -----|---- ---------- -|-------- --|------- (------)-- ------cuau 1441 au-uuauuc- ---------- ---------- -|-------( -----)---- ---------- 1501 GCA|GUA-AU UAAUAUUAUU --AAUUAAA( ---------- ----GAAA)U UUAGA-AAU| 1561 A|-GCA--AU AU-UAAaaa- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GUAUU|-GGC 1921 -AAA-A---U UGGU-G(-CC AGCAGUC-GC --GU-UA)-C ACCAAU|--- -AAU-ACA-- 1981 AAUAA-AUUU U--------- uuuAGU|aa- -aaguuaaau ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- --gauuauaa aauuaa--au -----|AAAA UUAAAU-UUA ----UUAG(G 2341 UGAAA)UUU- --------UA AAUU-UAAau u--------- -------auu --ua(-uuug 2401 -)ua|aau-- ----aaauug aaa------- ---------- --------cu aaaaa-aUUU 2461 U-AAU---UA AAAACUAGG( AUUAGAUAC) CCUA-UUAU| --UUA-AAA- ug-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaaa)a a--------a 2701 a-a|-uu|AU U-AAAG-UAG UAGUAGU(-- -uaug-u)UC UUG--AAACU UAAAAAAU-U 2761 UG|GCGGUA- UUUUAA--UC UCUCCAGA|G GAACCUGUua |UUGUA--AU CG(AUAAUCC 2821 A--------- ----)CGAUG G-ACCUUACU UAAGUUUGUA ---------- ---------- 2881 (--uu---c- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------AGU UUA-UA|UA- 3121 |CC|-GU--C |G------UU AU-CA|G-AA UAU-|UUU(A --UAA)GAA- -----(uaa- 3181 ---)------ u-aAUAUUCa aua-auuuu- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uaaa- 3781 -------a-a aaUUUA-UAU C-AGAUCAAG G|UGUA|GCU UAU------- ---------A 3841 U-U-UA-AG- -U-AAU--aA -UGGGUUACA AU--aa---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa aua--)---- ---------- ---------- ----uuuaa- 4021 ---------- ------ACGG --AUAAA-AU U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) A-AA-U--UU -U--UGAAG- -GUGGAUUUG 4141 G-U--AGUAA A-AUUAUA(- -aaga-ua-- --)AAUAAUU U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--AGCU 4261 CUAAAA-UA- UGU~~~~~-~ -~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -(~~~~~~)~ ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.quadr 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Anopheles quadrimaculatus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Anopheles quadrimaculatus. ORGANISM Mitochondrion Anopheles quadrimaculatus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L04272 DEFINITION Anopheles quadrimaculatus NADH dehydrogenase subunits (1-4, 4L, 5-6); cytochrome oxidase subunits (1-3); adenosine triphosphatase subunits (6,8); cytochrome b; transfer RNA; ribosomal RNA (large and small subunits). SOURCE Mitochondrion Anopheles quadrimaculatus (strain Orlando, organelle Mitochondrion Anopheles quadrimaculatus) DNA. ORGANISM Mitochondrion Anopheles quadrimaculatus Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea; Culicidae; Anophelelinae. REFERENCE 1 (bases 1 to 15455) AUTHORS Cockburn,A.F., Mitchell,S.E. and Seawright,J.A. TITLE Cloning of the Mitochondrial Genome of Anopheles quadrimaculatus JOURNAL Arch. Insect Biochem. Physiol. 14, 31-36 (1990) REFERENCE 2 (bases 1 to 15455) AUTHORS Mitchell,S.E., Cockburn,A.F. and Seawright,J.A. TITLE Complete Sequence of the Mitochondrial Genome of Anopheles quadrimaculatus JOURNAL Unpublished (1992) COMMENT NCBI gi: 342501 FEATURES Location/Qualifiers tRNA 1..64 /anticodon=(pos:31..33,aa:Ile) /product="transfer RNA-Ile" /note="putative" tRNA complement(66..134) /anticodon=(pos:102..104,aa:Gln) /product="transfer RNA-Gln" /note="putative" tRNA 134..202 /anticodon=(pos:164..166,aa:Met) /product="transfer RNA-Met" /note="putative" tRNA 1227..1295 /anticodon=(pos:1257..1259,aa:Trp) /product="transfer RNA-Trp" /note="putative" tRNA complement(1295..1358) /anticodon=(pos:1327..1329,aa:Cys) /product="transfer RNA-Cys" /note="putative" tRNA complement(1359..1424) /anticodon=(pos:1391..1393,aa:Tyr) /product="transfer RNA-Tyr" /note="putative" tRNA 2960..3025 /anticodon=(pos:2989..2991,aa:Leu) /product="transfer RNA-Leu" /note="putative" tRNA 3712..3772 /anticodon=(pos:3742..3744,aa:Lys) /product="transfer RNA-Lys" /note="putative" tRNA 3787..3860 /anticodon=(pos:3823..3825,aa:Asp) /product="transfer RNA-Asp" /note="putative" tRNA 5483..5549 /anticodon=(pos:5514..5516,aa:Gly) /product="transfer RNA-Gly" /note="putative" tRNA 5902..5965 /anticodon=(pos:5931..5933,aa:Arg) /product="transfer RNA-Arg" /note="putative" tRNA 5966..6031 /anticodon=(pos:5995..5997,aa:Ala) /product="transfer RNA-Ala" /note="putative" tRNA 6033..6099 /anticodon=(pos:5063..5065,aa:Asn) /product="transfer RNA-Asn" /note="putative" tRNA complement(6100..6166) /anticodon=(pos:6142..6144,aa:Ser) /product="transfer RNA-Ser" /note="putative" tRNA 6168..6233 /anticodon=(pos:6199..6201,aa:Glu) /product="transfer RNA-Glu" /note="putative" tRNA complement(6232..6298) /anticodon=(pos:6264..6266,aa:Phe) /product="transfer RNA-Phe" /note="putative" tRNA complement(8029..8104) /anticodon=(pos:8072..8074,aa:His) /product="transfer RNA-His" /note="putative" tRNA 9746..9810 /anticodon=(pos:9776..9778,aa:Thr) /product="transfer RNA-Thr" /note="putative" tRNA complement(9811..9872) /anticodon=(pos:9844..9846,aa:Pro) /product="transfer RNA-Pro" /note="putative" tRNA 11542..11607 /anticodon=(pos:11570..11572,aa:Ser) /product="transfer RNA-Ser" /note="putative" tRNA complement(12578..12643) /anticodon=(pos:12612..12614,aa:Leu) /product="transfer RNA-Leu" /note="putative" rRNA complement(12644..13964) /product="ribosomal RNA large subunit" /note="putative" tRNA complement(13965..14036) /anticodon=(pos:14001..14003,aa:Val) /product="transfer RNA-Val" /note="putative" rRNA complement(14037..14830) /product="ribosomal RNA small subunit" /note="putative" source 1..15455 /organism="Mitochondrion Anopheles quadrimaculatus" /strain="Orlando" /mitochondrion="Mitochondrion Anopheles quadrimaculatus" /sequenced_mol="DNA" /note="Sequence determined in part by overlap with internal peptide fragments" CDS 203..1228 /note="putative; NCBI gi: 471963." /product="NADH dehydrogenase subunit 2" /codon_start=1 /translation="IKKISNNIFFITLIFGTLVTISSNSWLGAWMGLEINLLSFIPLM NDNKKNLLTSESSLKYFLTQAFASSILLFAIIMLMFFYNNNFLLMNNYNEILILSTLL LKSGAAPFHFWFPEVMEGLSWINGLFLMTWQKIAPLMLISYNFIYNFFMISIILSMLI GSLGGLNQTSIRKLMAFSSINHLGWMLLAMMNNEMLWMTYFLIYSLLSISIVLMFNNF KLFYFNQIFNISLMNPIIKLLIFLNLLSLGGLPPFLGFLPKWLVIQNLTNMGQLFILT ISVCLTLITLFFYLRLSYSIFMLNYQKNSWMLKNNYNNKMSSINLLLNFISISGLIMI FMIYMIM" CDS 1423..2964 /partial /note="putative; NCBI gi: 471964." /product="cytochrome oxidase subunit 1" /codon_start=1 /translation="SRQWLFSTNHKDIGTLYFIFGAWAGMVGTSLSILIRAELGHPGA FIGDDQIYNVIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMSFWM LPPSLTLLISSSMVENGAGTGWTVYPPLSSGIAHAGASVDLAIFSLHLAGISSILGAV NFITTVINMRAPGITLDRMPLFVWSVVITAVLLLLSLPVLAGAITMLLTDRNLNTSFF DPAGGGEPNLYQHLFWFFGHPEVYILILPGFGMISHIITQESGKKETFGNLGMIYAML AIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAVPTGIKIFSWLATMHGTQLTYSP AMLWAFGFVFLFTVGGLTGVVLANSSIDIVLHDTYYVVAHFHYVLSMGAVFAIMAGFI HWYPLLTGLTMNPNWLKLQFAMMFVGVNLTFFPQHFLGLAGMPRRYSDFPDSYLAWNI VSSLGSTISLFAILYFLFIIWESMITQRTPAFPMQLSSSIEWYHTLPPAEHTYAELPL LTNNF" CDS 3027..3711 /transl_except=(pos:3711..3711,aa:OTHER) /note="stop=T; putative; NCBI gi: 471965." /product="cytochrome oxidase subunit 2" /codon_start=1 /translation="MATWANLGLQDSSSPLMEQLNFFHDHTLLILTMITILVGYIMGM LMFNQFTNRYLLHGQTIEIIWTVLPAIILMFIALPSLRLLYLMDEINTPSITLKSVGH QWYWSYEYSDFLNLEFDSYMIPTNELETNGFRLLDVDNRVVLPVNNQIRILVTATDVL HSWTVPSLGVKVDATPGRLNQLNFLINRPGLFFGQCSEICGANHSFMPIVIESIPMNY FIKWITNMTNX" CDS 3861..4022 /note="putative; NCBI gi: 342505." /product="adenosine triphosphatase subunit 8" /codon_start=1 /translation="IPQMAPINWLILFFIFSITLVIFNILNYFCFSYTPMKTSQSLNI KFNKLNWKW" CDS 4016..4696 /note="putative; NCBI gi: 471966." /product="adenosine triphosphatase subunit 6" /codon_start=1 /translation="MMTNLFSVFDPSTTILNLSLNWLSTFLGLLLIPFSFWLLPNRFQ VVWNNILLTLHKEFKTLLGPSGHNGSTLMFISLFSLIMFNNFLGLFPYIFTSTSHLTL TLALAFPLWLSFMLYGWINHTQHMFAHLVPQGTPPVLMPFMVCIETISNVIRPGTLAV RLTANMIAGHLLLTLLGNTGPMTTNYIILSLILTTQIALLVLESAVAIIQSYVFAVLS TLYSSEVN" CDS 4696..5482 /transl_except=(pos:5482..5482,aa:OTHER) /note="stop=T; putative; NCBI gi: 471967." /product="cytochrome oxidase subunit 3" /codon_start=1 /translation="MSAHANHPFHLVDYSPWPLTGAIGAMTTVSGLVQWFHQYTMTLF ILGNIITILTMYQWWRDISREGTFQGLHTFPVTIGLRWGMILFIVSEIFFFISFFWAF FHSSLSPTIELGMTWPPVGIIAFNPFQIPLLNTAILLASGVTVTWAHHALMESNHSQA TQGLFFTIVLGIYFSILQAYEYIEAPFTIADAVYGSTFYMATGFHGLHVLIGTTFLLI CFLRHINFHFSKNHHFGFEAAAWYWHFVDVVWLFLYISIYWWGSX" CDS 5550..5903 /note="putative; NCBI gi: 471968." /product="NADH dehydrogenase subunit 3" /codon_start=1 /translation="MLMLSIMATIIFIITIVVMMLATLLSKKTLLDREKCSPFECGFD PMNSSRLPFALRFFLIAIIFLIFDVEIALLLPMVMIIKTSNLMNWTMTSFFFIFILLI GLYHEWNQGALEWNN" CDS complement(6298..8028) /note="putative; NCBI gi: 471969." /product="NADH dehydrogenase subunit 5" /codon_start=1 /translation="INYCKISFYFLLSISLSLFLISLKFLLKDLVYFIEWEAWVFKSM SIVMTFLFDWMSLMFMSFVLLISSLVIFYSNQYMEEDYNINRFILLVLMFVMSMMMLI ISPNLISILLGWDGLGLVSYCLVIYFQNVKSYNAGMLTALSNRIGDVALLLAIAWMLN YGSWNYIFYLEMMSKNTEMMIIGGLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVH SSTLVTAGLYLLIRFNILLTDWWMGQFMLLISGLTMFMAGLGANFEFDLKKIIALSTL SQLGLMMSILSMGFYKLAFFHLLTHALFKALLFMCAGSIIHNMKNSQDIRMMGSLSMS MPLTCSCFNVANLALCGMPFLAGFYSKDLILEMVSLSYVNVFSFFLFFFSTGLTVCYS FRLVYYSMTGDFNSSVLHPLNDSGWTMLFSIFFLMIMAVIGGSMLSWLMFLNPSMICL PFDLKMLTLFVCILGGLIGYLLSNVSLFFTNKALYFYNFTYFAGSMWFMPVVSTIGVI NYPLKLGLYSYKSFDQGWSEFFGGQMIYNQLKNYSLYLQEFQMNSLKIYLLSYMLWFI VLLMLVVLVN" CDS complement(8103..9446) /partial /note="putative; NCBI gi: 471970." /product="NADH dehydrogenase subunit 4" /codon_start=1 /translation="MLKLIFMMLFMFPLSFLKNSYWMVQNLIFLLAFIFMINLSSMNY FNYISYYFGLDMISYGLILLSFWICGLMLMASEKVFTYNNYKNLFIFMILFLLFMLVL TFSSMSVFMFYLFFEASLIPTLFLILGWGYQPERLQAGVYLLFYTLLASLPLLIGIFY ILNFMDTLSFTLLLNYMFTDMNLLYLSLIFAFLVKMPMFLVHLWLPKAHVEAPVSGSM ILAGILLKLGGYGLLRMFSLLQVSGIKYNYWWISVSLIGGVLISLVCLRQTDLKALIA YSSVAHMGIVLSGLLTMTYWGLTGSYALMIAHGLCSSGLFCLANISYERMGSRSLLIN KGLLNFMPTLSLWWFLLCSGNMAAPPTLNLLGEISLLNSIVSWSWVTMIMLAFLSFFS AAYSLYLFAYSQHGKIFSGVYFFSVGTTREFLLLMLHWLPLNMLILKSGFCMLWLY" CDS complement(9440..9739) /note="putative; NCBI gi: 471971." /product="NADH dehydrogenase subunit 4L" /codon_start=1 /translation="MANMFLMFYLSMIMFLFGCMVFVSNRKHLLSTLLSLEYMVLSLF IFLFFYLNFMNYEMYFSMFFLTFCVCEGVLGLSILVSMIRTHGNDYFQSFSILQC" CDS 9879..10403 /note="putative; NCBI gi: 471972." /product="NADH dehydrogenase subunit 6" /codon_start=1 /translation="ITKLIIMTICLIISFIFMQMKHPLSMGLMLLTQTFLTCLLTGIY VKTFWFSYVLFLIFLGGMLILFIYVHSLSSNEMFTMSFNLTTLSLLIFFLMTLFFFII DKSLIEQFISNMEMEMFSFNNNLINENILFLNKMYNFPTNLITLLLINYLFLTLLVTV KITKKFYGPLRPMN" CDS 10403..11539 /note="putative; NCBI gi: 471973." /product="cytochrome b" /codon_start=1 /translation="MFKPIRKTHPLISIANNALVDLPAPSNISAWWNFGSLLGLCLML QILTGLFLAMHYAADIETAFNSVNHICRDVNNGWFLRICHANGASFFFACLFMHVGRG VYYESYLYHMTWNTGVIILFLTMATGFLGYVLPWGQMSFWGATVITNLLSAVPYLGMD LVQWIWGGFAVDNTTLTRFFTFHFIFPFIILALMMIHLLFLHQTGSNNPLGLNSNVDK IPFHPYFIYKDIFGFIVFYWILIRFIWKFNYLLMDPENFIPANPLVTPVHIQPEWYFL FAYAILRSIPNKLGGVIALVLSIAILLILPFTHSSKFRGLQFYPLNQILFWNMVVVAS LLTWIGARPVEDPYVLTGQILTVLYFSYFIINPLLAKYWDKLLN" CDS complement(11627..12571) /note="putative; NCBI gi: 471974." /product="NADH dehydrogenase subunit 1" /codon_start=1 /translation="IFDKIMPLIGSLLLVICVMVGVAFLTLLERKVLGYIQIRKGPNK VGFNGLLQPFSDAVKLFTKEQTYPLLSNYISYYFSPIFSLFLSLVIWMCIPYLIKLYS FNLGVLFFLCCTSLGVYTVMIAGWSSNSNYALLGGLRAVAQTISYEVSLALILLSFIF LIGNYNFLNFYSYQSYIWFIFFCFPLGLVWLASCLAETNRTPFDFAEGESELVSGFNV EYSSGGFALIFLAEYSSILFMSMLFVVIFLGSDIYSLMFFFKLTFISFVFIWVRGTLP RFRYDKLMYLAWKSFLPLSLNYLFFFVGLKIFFISLLF" BASE COUNT 309 a 59 c 96 g 330 t 4419 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --auauuauu 661 (UUA-)U-UC U|aguua-aa uau-UUUAUU -A-UUAU-UU |UA-UU--U- -UAC-A-UGU 721 -AAA------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|u uuau---gua ugaa------ -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- -------uua uuauuaauuu (uaa)aaauu 1141 aauaau---- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- |--------- ---------- 1321 ---------- -----(---- ---------- ---------- ---------- ------)--- 1381 -----|---- ---------- -|-------- --|------- (------)-- ------uuuu 1441 auuuuauuc- ---------- ---------- -|-------( -----)---- ---------- 1501 GCA|GUA-AU UAAUAUUAAU --UAUAAAA( ---------- ----GAAA)U UUUGA-AUU| 1561 A|-AUA--AU AA-UAUaua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GUAUU|-GGU 1921 -AAA-A---U UUGU-G(-CC AGCUACU-GC -GGU-UA)-U ACAAAU|--- -GAU-GCA-- 1981 AAUAA-Aaau u--------- uuuAGU|gu- -uaguuaaau ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ugauaaauuu auuaau--au -----|AUCU AUAAAU-UUA ----UUAG(G 2341 UGAAA)UUU- -------uuA AAUU-UAU-- u--------- --------ua --ug(auuaa 2401 u)ua|aa--- ----auuuua auuuaag--- ---------- -------cua ua-aa-aAUU 2461 U-UAU---AA UAAACUAGG( AUUAGAUAC) CCUA-UUAU| --UAA-AAU- ua-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(aauu)a a--------- 2701 a-a|-au|AC U-AAAG-UAG UAUUAGU(-- -uaua-u)UC UUA--AAAUU UAAAGAAU-U 2761 UG|GCGGUG- UUUUAG--UC UAUUUAGA|G GAAUCUGU-U |CUGUU--AU UG(AUAAUCC 2821 A--------- ----)CGUUG G-ACCUAACU UAAAUUUGUU ---------- ---------- 2881 (--uu---c- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------AAU UUG-UA|UA- 3121 |UC|-GC--C |G------UC AU-CA|G-AA UAU-|AUU(A --UAA)GAU- -----(uaa- 3181 ---)------ u-aAUUUUCu aaa-uauuu- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uauu- 3781 -------a-a auaaaA-UGU C-AGGUCAAG G|UGCA|GUU UAU------- ---------A 3841 U-U-UA-AG- -U-AGA--AA -UGGAUUACA AU--aa---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au uua--)---- ---------- ---------- ----uuuau- 4021 ---------- ------ACGG --AUAAU-UU U-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) A-AA-A--AU -U--UGAAG- -GUGGAUUUA 4141 A-U--AGUAA U-AUAAAA(- -aaga-uu-- --)AUUUAUA U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--AGCU 4261 CUAAAA-CA- UGCACACA-U -CGCCCGUCG C-UCU--CAU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(uuuaa-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- AAUG-AGA-U AAGUCGUAAC AUAGUAGA-U GUA-CU(GGA 4621 -A)AGU-GU- AUCUAGAAUG A--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.gambi 5213 bp RNA RNA 18-APR-1994 DEFINITION Mitochondrion Anopheles gambiae. str. G3, organelle Mitochondrion Anopheles gambiae. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Anopheles gambiae. str. G3, organelle Mitochondrion Anopheles gambiae. ORGANISM Mitochondrion Anopheles gambiae. REFERENCE 1 (bases 1 to 15363) AUTHORS Beard,C.B., Hamm,D.M. and Collins,F.H. TITLE DNA sequence, genome organization, and comparisons with mitochondrial sequences of other insects The mitochondrial genome of the mosquito Anopheles gambiae: JOURNAL Insect Mol. Biol. (1993) In press STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L20934 BASE COUNT 302 a 60 c 103 g 335 t 4413 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- --------aa uaagauuauu 661 (UUA-)U-UC U|aguua-aa uau-UUUAUU -A-UUAU-UU |UA-UU--U- -UAC-A-UGU 721 -AAA------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|u uuuu---gug ugaa------ -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- -------uuu uuauuaauuu (uaa)aaauu 1141 aauaau---- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- |--------- ---------- 1321 ---------- -----(---- ---------- ---------- ---------- ------)--- 1381 -----|---- ---------- -|-------- --|------- (------)-- ------uuuu 1441 aauuuauuc- ---------- ---------- -|-------( -----)---- ---------- 1501 GCA|GUA-AU UAAUAUUAAU --UAUAAAA( ---------- ----GAAA)U UUUGA-AUU| 1561 A|-GUA--AU AA-UAUaua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GUAUU|-GGU 1921 -AAA-A---U UUGU-G(-CC AGCUACU-GC -GGU-UA)-U ACAAAU|--- -GAU-GCA-- 1981 AAUAA-Aaau u--------- uuuAGU|au- -uaguuaaau ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------ug uuuauaauua uuuaau--uu -----|AUAU AUAAAU-UUA ----UUAG(G 2341 UGAAA)UUU- -------uuA AAUU-UAU-- u--------- --------ua --uu(-auua 2401 a)aa|ugu-- ----agauua auuuaag--- ---------- -------cua ua-aa-aAUU 2461 U-UAU---AA UAAACUAGG( AUUAGAUAC) CCUA-UUAU| --UAA-AAU- ua-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- aau(auau)a a--------- 2701 g-a|-au|AC U-UAAG-UAG UAUUAGU(-- -uaua-u)UC UUA--AAAUU UAAAGAAU-U 2761 UG|GCGGUG- UUUUAG--UC UAUUUAGA|G GAAUCUGU-U |CUGUA--AU UG(AUAAUCC 2821 A--------- ----)CGUUG G-ACCUCACU UAAUUUUGUU ---------- ---------- 2881 (--uu---c- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------AAU UUG-UA|UA- 3121 |UC|-GC--C |G------UC AU-CA|G-AA UAU-|AUU(A --UAA)GAU- -----(uaa- 3181 ---)------ u-aAUUUUCu uga-uauuu- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----cauu- 3781 -------a-a auaauA-UGU C-AGGUCAAG G|UGCA|GUU UAU------- ---------G 3841 G-U-UA-AG- -U-AGA--AA -UGGAUUACA AU--aa---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au aua--)---- ---------- ---------- ----uuuau- 4021 ---------- ------ACGG --AUAAU-UU U-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) A-AA-A--AU -U--UGAAG- -GUGGAUUUA 4141 A-U--AGUAA U-AUAAAA(- -uaga-uu-- --)AUUUAUA U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--AGCU 4261 CUAAAA-CA- UGCACACA-U -CGCCCGUCG C-UCU--CAU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(uuuaa-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- AAUG-AGA-U AAGUCGUAAC AUAGUAGA-U GUA-CU(GGA 4621 -A)AGU-GU- AUCUAGAAUG A--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.A.melli 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Apis mellifera. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Apis mellifera. ORGANISM Mitochondrion Apis mellifera. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: S51650 L06178 DEFINITION tRNA-Glu...rRNA small subunit [Apis mellifera=honeybees, ligustica, Mitochondrial Complete, 37 genes, 16343 nt] SOURCE honeybees ligustica ORGANISM Mitochondrion Apis mellifera Unclassified. REFERENCE 1 (bases 1 to 16343) AUTHORS Crozier,R.H. and Crozier,Y.C. TITLE The mitochondrial genome of the honeybee Apis mellifera: complete sequence and genome organization. JOURNAL Genetics 133, 97-117 (1993) COMMENT This entry [NCBI gibbsq 121689] was created by the journal scanning component of NCBI/GenBank at the National Library of Medicine. This sequence comes from Fig. 3. FEATURES Location/Qualifiers tRNA 1..66 /note="Description: tRNA-Glu" tRNA 116..178 /note="Description: tRNA-Ser" tRNA 221..286 /note="Description: tRNA-Met" tRNA 296..358 /note="Description: tRNA-Gln" tRNA 360..429 /note="Description: tRNA-Ala" tRNA 433..501 /note="Description: tRNA Ile" tRNA 1503..1571 /note="Description: tRNA-Cys" tRNA 1592..1659 /note="Description: tRNA-Tyr" tRNA 1722..1793 /note="Description: tRNA-Trp" tRNA 3354..3424 /note="Description: tRNA-Leu" tRNA 4294..4362 /note="Description: tRNA-Asp" tRNA 4370..4438 /note="Description: tRNA-Lys" tRNA 6119..6184 /note="Description: tRNA-Gly" tRNA 6572..6638 /note="Description: tRNA-Arg" tRNA 6734..6802 /note="Description: tRNA-Asn" tRNA 6810..6878 /note="Description: tRNA-Phe" tRNA 8557..8624 /note="Description: tRNA-His" tRNA 10267..10344 /note="Description: tRNA-Thr" tRNA 10365..10432 /note="Description: tRNA-Pro" tRNA 12201..12267 /note="Description: tRNA-Ser" tRNA 13220..13290 /note="Description: tRNA-Leu" tRNA 14662..14731 /note="Description: tRNA-Val" rRNA 13291..14661 /note="Description: rRNA large subunit" rRNA 14732..15517 /note="Description: rRNA small subunit" CDS 502..1503 /note="Authors indicate ATC start codon. ND2; For the protein sequence (NCBI gibbsq 121690): Method: conceptual translation supplied by author. This sequence comes from Fig. 3." /product="NADH dehydrogenase 2" /codon_start=1 /translation="IFFMNFKYHWFIYFLITIFVLMMNSNNIFIQWMLMEFGTIISIS LINIKSTNKTPSLIYYSVSVISSIFLFFMIIVYLSSISFTKTDTFNFMVQMMFFLKIG TFPFHFWMIYSYEMMNWKQIFLMSTLIKFIPIYMMVSMTKINSWTLYFLITNSLYISF YANKFYTLKKLLACSTIFNSFYFIFILELNKNMFIAMIILYSFNYFLLISFLNKFNIQ NFNFMFYNKYQMYTFLTLMFNYSMYPIFLSFVIKWNLIFMMVSVKAYNWILFLLMISS MLMIWNYIIILKRVFLKMNFYKNNFIDDKDNKYMYHSYFALTLLSFNISFFITLNFL" CDS 1794..3353 /note="Authors indicate TTT stop codon. COI; For the protein sequence (NCBI gibbsq 121691): Method: conceptual translation supplied by author. This sequence comes from Fig. 3. Author-given protein sequence differs from the conceptual translation for reasons explained in citation" /product="cytochrome oxidase I" /codon_start=1 /translation="MMKWFMSTNHKNIGILYIILALWSGMLGSSMSLIIRMELSSPGS WISNDQIYNTIVTSHAFLMIFFMVMPFLIGGFGNWLIPLMLGSPDMAFPRMNNISFWL LPPSLFMLLLSNLFYPSPGTGWTVYPPLSAYLYHSSPSVDFAIFSLHMSGISSIMGSL NLMVTIMMMKNFSMNYDQISLFPWSVFITAILLIMSLPVLAGAITMLLFDRNFNTSFF DPMGGGDPILYQHLFWFFGHPEVYILILPGFGLISHIVMNESGKKEIFGNLSMIYAML GIGFLGFIVWAHHMFTVGLDVDTRAYFTSATMIIAVPTGIKVFSWLATYHGSKLKLNI SILWSLGFIMLFTIGGLTGIMLSNSSIDIILHDTYYVVGHFHYVLSMGAVFAIISSFI HWYPLITGLLLNIKWLKIQFIMMFIGVNLTFFPQHFLGLMSMPRRYSDYPDSYYCWNS ISSMGSMISLNSMIFLIFIILESLISKRMLLFKFNQSSLEWLNFLPPLDHSHLEIPLL IKNLNLKSILIK" CDS 3618..4295 /note="Authors indicate ATT start codon. COII; For the protein sequence (NCBI gibbsq 121692): Method: conceptual translation supplied by author. This sequence comes from Fig. 3." /product="cytochrome oxidase II" /codon_start=1 /translation="ISTWFMFMFQESNSYYADNLISFHNMVMMIIIMISTLTVYIILD LFMNKFSNLFLLKNHNIEIIWTIIPIIILLIICFPSLKILYLIDEIVNPFFSIKSIGH QWYWSYEYPEFNNIEFDSYMLNYNNLNQFRLLETDNRMVIPMKIPLRLITTSTDVIHS WTVPSLGIKVDAVPGRINQLNLISKRPGIFFGQCSEICGMNHSFMPIMIESTSFQYFL NWVNKQI" CDS 4444..4602 /note="Authors indicate ATT start codon. For the protein sequence (NCBI gibbsq 121693): Method: conceptual translation supplied by author. This sequence comes from Fig. 3." /product="ATPase8" /codon_start=1 /translation="IPQMMPMKWFLIYFIYLLIFYLFIMLINSMLIKTKINKETLKIK LKKWNWFW" CDS 4584..5264 /note="For the protein sequence (NCBI gibbsq 121694): Method: conceptual translation supplied by author. This sequence comes from Fig. 3." /product="ATPase6" /codon_start=1 /translation="MKLILMMNLFEMFDPSTSNNLSMNWLFMMLPIIIFPSIFWLIQS RIMFIMKTLMNFMYNEFKVVSKSKYQSNIIIFISLMLYIMITNIFSLIPYVFTLTSHL LLNMILSLTLWFSFLIYLIYNNYIMFLSHLVPLNSPVFLMNFMVIIELISLIIRPWTL SIRLSANLISGHLILTLLGIFISNFISILPINLMIQNMLLTLEIFMSMIQSYVFSILL ILYFSESN" CDS 5285..6064 /note="COIII; For the protein sequence (NCBI gibbsq 121696): Method: conceptual translation supplied by author. This sequence comes from Fig. 3." /product="cytochrome oxidase III" /codon_start=1 /translation="MKKNFPFHMVTNSPWPIILSFSFMNTLISTVIWIYSSISMFMIL NFINSILIMMLWFRDIIRESTFQGMHSMFITNFLKFSMILFILSELMFFISFFWTFFH SSISPNIEINMTWPPKNIKFFNPMEIPLLNSFILVSSGFTVTLSHYYLIINNLKLSKS YLLLTILLGIYFTILQTIEYSNSFFCFNDSIYGSIFFMATGFHGLHVLIGSIFLLISL YRMMNIHFSNMHNMNFELAIWYWHFVDVIWLFLYTFIYLLI" CDS 6185..6538 /note="ND3; For the protein sequence (NCBI gibbsq 121697): Method: conceptual translation supplied by author. This sequence comes from Fig. 3." /product="NADH dehydrogenase 3" /codon_start=1 /translation="MKFIFMYFIFIILISSILLLLNKFISIYKKKDYEKSSPFECGFN PITKANLPFSLPFFLMTMMFLIFDVEIILFLPIIFYLKSSSTMISYLMISIFLILLIT TLILEWMNNYLNWLF" CDS complement(6892..8556) /note="Authors indicate ATT start codon. ND5; For the protein sequence (NCBI gibbsq 121698): Method: conceptual translation supplied by author. This sequence comes from Fig. 3." /product="NADH dehydrogenase 5" /codon_start=1 /translation="IIKMMVCGILLFEFSFLMMLMSLYLLYLNKEFFFEWNIYTFNSM KFNFLLLIDYKSLMFIFLVSMIFSMIIIYSISYMDLSELKMDRFLYLMILFLISMYML ILSPNMLSIILGWDGLGLISYCLVIYYMKMKSFTSGMVTILLNRLGDIGLLLIMGLMT YYGSWNLSFYKMNEFMMIYILLMAFTKSAQIPFSTWLPMAMMAPTPVSSLVHSSTLVT AGIYLLIRYVNLLDFNYKNYIMLIASLTMLFAGLVANFELDLKKVVAYSTLSQLGFMM SMLSIGSTELVFLHLFIHAMFKSLMFMCVGSYMHYMYSNQDIRMYYGMYYIYPMKSMI LIFSILSLCGFPFLVGYYSKDLIIEMFFFSKMIYFSMINLIIGTIFTVSYSFRMILVL TSKFLMMNVIYSKEDKIMCISMMMMMIFSLIYSKLIFNLMNFNLLGINLLMIYKLMVF KMIMVGLIMGFNFYKLILLNNKIGYFKMSFLFMNLIYKIIYKKIIMMMFTYEVYIEKS IIEILSSKFMSVTLNIYELKISNLMINIYLTILIYLIYLLIYLINF" CDS complement(8644..9987) /note="NAD4; For the protein sequence (NCBI gibbsq 121701): Method: conceptual translation supplied by author. This sequence comes from Fig. 3." /product="NADH dehydrogenase 4" /codon_start=1 /translation="MYLLLLLIMLNMLMMSMIYLFMLFMNKMKNNLNLIIGNLIIINL LLNLFNLNWIDWIYIFCNLSFNMYSYGLIMLTLWIFGLIFISLNNNSLNCLFMNLLLM ISLLLVFLSMNLLLFYLFYEFGLLLIFYLVVKWGYSENRWLSGFYLMFYTMIFSLPML YIIYYIYLIDYSLNFMLMEMLNLNLNMMLFIYLLMSFLVKIPIYLFHGWLLKAHVEAP YYGSMILASIMLKLGGYGMLRLMIIYKNEFILIQKILVMINSFGVLILSLMCLSQFDM KSIIAISSIVHMGLMIMSMMTFLKISLIGGYLMMISHGLSSSGLFFLVNVIYSQTNSR LMFINKGMINFMPSMSLLWFMLCSSNMGSPVSLNLISEVMLLIGMISWLKFMMLILMM YCLFSFIYSIYLFMFINHGKIFIMFKIKNGILVEYFVLLLHWIPLNLMFLKLYFI" CDS complement(9991..10254) /note="Authors indicate ATT start codon. ND4L; For the protein sequence (NCBI gibbsq 121702): Method: conceptual translation supplied by author. This sequence comes from Fig. 3." /product="NADH dehydrogenase 4L" /codon_start=1 /translation="IKLLFVMMLLFFMFLWYYNVNFLSFLILMEFLVITVLFFIIGYE INSWLFLIFLVFSVCELVLGLSLLVSMNYELGHQKLSVMDLIY" CDS 10441..10944 /note="Authors indicate ATT start codon. ND6; For the protein sequence (NCBI gibbsq 121703): Method: conceptual translation supplied by author. This sequence comes from Fig. 3." /product="NADH dehydrogenase 6" /codon_start=1 /translation="IMLTIIMLSKIFMSSLISMILTIYLNNIFNSPSMLLIYLISYSI YMSLMMFTMCSMNSLLILMILIVFLSGMLIMFSYFISLINEPLKLKMKPFIQTLFLII ITMKIYNKLSQNEHYFNYFKNIDLMYLYMKMNSTLFFIMILMLIITLILMTKITYIEK KTLRKKK" CDS 11004..12155 /note="Cyt b; For the protein sequence (NCBI gibbsq 121704): Method: conceptual translation supplied by author. This sequence comes from Fig. 3." /product="cytochrome b" /codon_start=1 /translation="MKKFMNFFSSNEFLKMIMSTIYLPTPVNINYMWNFGSILGIFLM IQIISGFILSMHYCPNIDIAFWSITNIMKDMNSGWLFRLIHMNGASFYFLMMYIHISR NLFYCSYKLNNVWGIGIMILLMSMAAAFMGYVLPWGQMSYWGATVITNLLSAIPYIGD TIVLWIWGGFSINNATLNRFFSLHFILPLLILFMVILHLFALHLTGSSNPLGSNFNNY KISFHPYFSIKDLLGFYIILFIFMFINFQFPYHLGDPDNFKIANPMNTPTHIKPEWYF LFAYSILRAIPNKLGGVIGLVMSILILYIMIFYNNKMMNNKFNMLNKIYYWMFINNFI LLTWLGKQLIEYPFTNINMLFTTTYFLYFFLNFYLSKLWDNLIWNSPLN" CDS complement(12302..13219) /note="Authors indicate ATT start codon. ND1; For the protein sequence (NCBI gibbsq 121705): Method: conceptual translation supplied by author. This sequence comes from Fig. 3." /product="NADH dehydrogenase 1" /codon_start=1 /translation="IWVLINLLILMIMVLISVAFLTLLERKILGYIQDRKGPNKIMLF GMFQPFSDALKLLSKEWFFFNYSNLFIYSPMLMFFLSLVMWILYPWFGFMYYIEFSIL FMLLVLGLSVYPVLFVGWISNCNYAILGSMRLVSTMISFEINLFFLVFSLMMMVESFS FNEFFFFQNNIKFAILLYPLYLMMFTSMLIELNRTPFDLIEGESELVSGFNIEYHSSM FVLIFLSEYMNIMFMSVILSLMFYGFKYWSIKFILIYLFHICLIIWIRGILPRIRYDK LMNMCWTEMLMLVMIYLMYLYFMKEFLCI" BASE COUNT 329 a 46 c 100 g 311 t 4427 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ------auua uaaauuuauu aaa-UAAAUC 661 (AUG-)U-UG U|AGUUUUUU AGA-UUAAUU -G-UAUU-AA |UU-GA--U- uUAU-A-UAU 721 -AAA------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|a uau----aaa aauua----- -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ------uuaa -aaa-uua-- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- |--------- ---------- 1321 ---------- -----(---- ---------- ---------- ---------- ------)--- 1381 -----|---- ---------- -|-------- --|------- (------)-- -------uag 1441 uaaauuauag ---------- ---------- -|-------( -----)---- ---------- 1501 UUA|AUA-GA GAAUUCuGAA acaaugaau( ---------- ----GAAA)G UUUUA-UUC| 1561 G|-GAA--AU UA-AUUcua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GUAAG|-GAU 1921 -AAA-Ua--U GAGUcG(-CC AGCAAUA-GC -GGU-UA)-A ACUUGA|--- -CUU-AUA-- 1981 AAUUA-AUUU U--------u ucuAAU|auu -aauuuaaau ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------ug u-aauaaaaa uuauaa--uu -----|AAAU UUAUUG-AUU ----UUAG(G 2341 UGAAA)UUU- ------ugaA UUAA-UAA-- u--------- --------aa --ua(-auua 2401 -)ua|aau-- ----aauuuu uuuuguc--- ---------- --------au uaaaa-aAUU 2461 U-AAU---AA AAAACUAGG( AUUAGAUAC) CCUA-CUAU| --AAA-AAU- ag-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaau)a ---------a 2701 a-u|-au|AU U-AAGG-UAG UAAAUGU(-- -ugaa--)UC AUU--AAAAU UAAACGAU-A 2761 UG|GCGGCU- UUUUAU-aUC UAGUUAGA|G AUGUUUGU-C |gAUUA-aUU UG(AUAGUCC 2821 A--------- ----)CGAUA A-GAUCUACU UAAGUUUAAA ---------- ---------- 2881 (-uuu---au g--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------UAU UGU-UG|UU- 3121 |UU|aau--u |a-------- ----g|C-UU GAA-|UUU(A --UUU)GGG- -----(---- 3181 ---)------ ---UUAGAGA A----auuu- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uaua- 3781 -------U-A AUAAUA-AUU C-AAAUCAAA A|UGUA|GU- -AU------- ---------A 3841 U-U-UA-AGa uA-UAA--GA -UGAAUAUCA AU--aa---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au uua-a)---- ---------- ---------- ----uuuu-- 4021 ---------- ------A-GA --AUUAU-UU A-U(------ ---------- ---------- 4081 ---------- ---------- UUUAAu---) A-UA-A--AU -A--UGAAA- -GAGAAUUUA 4141 A-A--AGUAA A-UUAAAG(- -uaau-uu-- --)CUUUAAU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GAU--AGUA 4261 UUAAAA-AG- UGUACAAA-U -CGCCCGUCA A-UUU--CAU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(aaa---)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- AUUG-GAA-U AAGUCGUAAC AUAGUAAG-A GUA-CC(GGA 4621 -A)GGU-GU- UUUUAGAUU- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.B.atrop 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Blaberus atropos.; . ACCESSION U17764 KEYWORDS . SOURCE Mitochondrion Blaberus atropos. ORGANISM Mitochondrion Blaberus atropos. REFERENCE 1 (bases 1 to 431) AUTHORS Kambhampati,S. TITLE sequence of mitochondrial ribosomal RNA genes A phylogeny of cockroaches and related insects based on DNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 431) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17764 NCBI gi: 623262 BASE COUNT 142 a 47 c 75 g 167 t 4782 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCUA-UAUG| ----u-gaa- ua-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaau)a u--------- 2701 u-u|-aa|AC U-UAAG-UAG UAAUAGU(-- -uaug-g)UC UUG--AAACU UAAAGAAU-U 2761 U-|GCGGUA- UUUUAG--UC UGUUUAGA|G GAAUCUGU-C |CCGUG--AU CG(AUAGUCC 2821 G--------- ----)CGUUG A-ACCUAACU UAAUCAAUAU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------AGU GUG-UA|UA- 3121 |CC|-GC--C |G------UU UA-UU|g-aa uau-|uuu(u --uua)gga- -----(---- 3181 ---)------ --uauuuucu uua-aauuu- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----auuau 3781 au-----a-a auuuuA-UUU C-AGGUCAAG G|UGCA|GCU UAU------- ---------A 3841 A-U-UA-AG- -G-GGA--GA -UGGAUUACA UU--au---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu uaa-a)---- ---------- ---------- ----auaa-- 4021 ---------- ------ACGU --GUUAU-AU U-U(------ ---------- ---------- 4081 ---------- ---------- UGUAAA---) U-UU-U--AU -A--UGAAG- -GUGGAUUUA 4141 A-U--AGUAA U-UCUUUG(- -uaga-uu-- --)GUAAUUG U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--AGCU 4261 CUAUAA-UA- UGCACACA-U -CGCCCGUCA G-UCU--CGU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(aaaau-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- -----uuuaa AGUG-AGA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.B.crani 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Blaberus craniifer.; . ACCESSION U17766 KEYWORDS . SOURCE Mitochondrion Blaberus craniifer. ORGANISM Mitochondrion Blaberus craniifer. REFERENCE 1 (bases 1 to 434) AUTHORS Kambhampati,S. TITLE sequence of mitochondrial ribosomal RNA genes A phylogeny of cockroaches and related insects based on DNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 434) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17766 NCBI gi: 623264 BASE COUNT 142 a 48 c 75 g 169 t 4779 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCUA-UUAU| --UGU-GAA- ua-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaau)a u--------- 2701 u-u|-aa|AC U-UAAG-UAG UAAUAGU(-- -uaug-g)UC UUG--AAACU UAAAGAAU-U 2761 UG|GCGGUA- UUUUAG--UC UGUUUAGA|G GAAUCUGU-C |CCGUG--AU CG(AUAGUCC 2821 G--------- ----)CGUUG A-ACCUAACU UAAUCAAUAU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------AGU GUG-UA|UA- 3121 |CC|-GC--C |G------UU UA-UU|g-aa uau-|uuu(u --uua)gga- -----(---- 3181 ---)------ --uauuuucu uua-aauuu- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----auuau 3781 au-----a-a auuuuA-UUU C-AGGUCAAG G|UGCA|GCU UAU------- ---------A 3841 A-U-UA-AG- -G-GGA--GA -UGGAUUACA UU--au---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu uaa-a)---- ---------- ---------- ----auaa-- 4021 ---------- ------ACGU --GUUAU-AU U-U(------ ---------- ---------- 4081 ---------- ---------- UGUAAA---) U-UU-U--AU -A--UGAAG- -GUGGAUUUA 4141 A-U--AGUAA U-UCUUUG(- -uaga-uu-- --)GUAAUUG U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--AGCU 4261 CUAUAA-UA- UGCACACA-U -CGCCCGUCA C-UCU--CGU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(aaaau-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- -----uuuaa AGUG-AGA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.B.disco 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Blaberus discoidalis.; . ACCESSION U17768 KEYWORDS . SOURCE Mitochondrion Blaberus discoidalis. ORGANISM Mitochondrion Blaberus discoidalis. REFERENCE 1 (bases 1 to 433) AUTHORS Kambhampati,S. TITLE sequence of mitochondrial ribosomal RNA genes A phylogeny of cockroaches and related insects based on DNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 433) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17768 NCBI gi: 623266 BASE COUNT 142 a 48 c 75 g 168 t 4780 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCUA-UUAU| ---gu-gaa- ua-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaau)a u--------- 2701 u-u|-aa|AC U-UAAG-UAG UAAUAGU(-- -uaug-g)UC UUG--AAACU UAAAGAAU-U 2761 UG|GCGGUA- UUUUAG--UC UGUUUAGA|G GAAUCUGU-C |CCGUG--AU CG(AUAGUCC 2821 G--------- ----)CGUUG A-ACCUAACU UAAUCAAUAU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------AGU GUG-UA|UA- 3121 |CC|-GC--C |G------UU UA-UU|g-aa uau-|uuu(u --uua)gga- -----(---- 3181 ---)------ --uauuuucu uua-aauuu- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----auuau 3781 au-----a-a auuuuA-UUU C-AGGUCAAG G|UGCA|GCU UAU------- ---------A 3841 A-U-UA-AG- -G-GGA--GA -UGGAUUACA UU--au---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu uaa-a)---- ---------- ---------- ----auaa-- 4021 ---------- ------ACGU --GUUAU-AU U-U(------ ---------- ---------- 4081 ---------- ---------- UGUAAA---) U-UU-U--AU -A--UGAAG- -GUGGAUUUA 4141 A-U--AGUAA U-UCUUUG(- -uaga-uu-- --)GUAAUUG U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--AGCU 4261 CUAUAA-UA- UGCACACA-U -CGCCCGUCA C-UCU--CGU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(aaaau-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- -----uuuaa AGUG-AGA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.B.fumig 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Byrsotria fumigata.; . ACCESSION U17770 KEYWORDS . SOURCE Mitochondrion Byrsotria fumigata. ORGANISM Mitochondrion Byrsotria fumigata. REFERENCE 1 (bases 1 to 432) AUTHORS Kambhampati,S. TITLE A phylogeny of cockroaches and related insects based on DNA sequence of mitochondrial ribosomal RNA genes JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 432) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17770 NCBI gi: 623268 BASE COUNT 130 a 51 c 85 g 166 t 4781 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCUA-UUAU| --UUU-AAA- ug-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaau)u u--------- 2701 --g|-ug|AC C-UGAG-UAG UAAUUGU(-- -uaag-g)UC UUG--AAACU UAAAGAAU-U 2761 UG|GCGGCA- UUUUAG--UC UAUUUAGA|G GAAUCUGU-U |CCAUA--AU CG(AUAGUCC 2821 A--------- ----)CGUUG A-ACCUUACU UGGUUUAUAA ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------GGU AUG-UA|UA- 3121 |CC|-GC--C |G------UU UA-UU|g-aa uau-|uuu(u --uua)gaa- -----(--g- 3181 u--)------ --uauguucu ucu-aaucua u--------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uu--- 3781 -------u-u aucuuA-UUU C-AGGUCAAG G|UGCA|GCU UAU------- ---------A 3841 A-U-UA-AG- -G-GGA--GA -UGGAUUACA AU--ac---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu uaa-g)---- ---------- ---------- ----guag-- 4021 ---------- ------ACGU --AUUAU-UG G-G(------ ---------- ---------- 4081 ---------- ---------- UUGAUA-u-) A-UU-U--GU -A--UGAAG- -GUGGAUUUA 4141 A-U--AGUAA U-UUUUUG(- -uaga-uu-- --)GUAGAUA U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -uUG--AGCU 4261 CUAAAA-UG- UGCACACA-U -CGCCCGUCA C-UCU--CGU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(gaauu-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ------auaa AGUG-AGA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.B.gigan 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Blaberus giganteus.; . ACCESSION U17772 KEYWORDS . SOURCE Mitochondrion Blaberus giganteus. ORGANISM Mitochondrion Blaberus giganteus. REFERENCE 1 (bases 1 to 431) AUTHORS Kambhampati,S. TITLE sequence of mitochondrial ribosomal RNA genes A phylogeny of cockroaches and related insects based on DNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 431) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17772 NCBI gi: 623270 BASE COUNT 142 a 44 c 80 g 165 t 4782 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCUA-UAUG| ---------- ---------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaua)u a------auu 2701 u-u|-aa|AC U-UAGG-UAG UAAUAGU(-- -uaug-a)UC UUG--AAACU UAAAGAAU-U 2761 U-|GCGGUA- UUUUAG--UC UGUUUAGA|G GAAUCUGU-C |CCGUA--AU CG(AUAGUCC 2821 A--------- ----)CGUUG A-AUCUUACU UAGUUUAUAA ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------AGU AUG-UA|UA- 3121 |CC|-GC--C |G------UU UA-UU|g-aa uau-|uuu(u --uua)gga- -----(--u- 3181 aa-)------ --uauuuucu uaa-aauaug ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uagua 3781 uaa----u-g auuuuA-UUU C-AGGUCAAG G|UGCA|GCU UAU------- ---------A 3841 A-U-UA-AG- -G-GGA--GA -UGGAUUACA AU--au---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu aaa-g)---- ---------- ---------- ----guaa-- 4021 ---------- ------ACGG --AUUAU-AA U-U(------ ---------- ---------- 4081 ---------- ---------- UUGGAA-u-) G-AUUU--AU -G--UGAAG- -GUGGAUUUG 4141 A-U--AGUAA U-UUUUUG(- -uaga-uu-- --)GUAAAUA U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--GGCU 4261 CUAAGG-UA- UGUACACA-U -CGCCCGUCA C-UCU--cgu u--------- ---------- 4321 ---------- ---------- ---------- ---------- -(aaaau-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------u uuaa-AGA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.palli 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Phoetalia pallida.; . ACCESSION U17815 KEYWORDS . SOURCE Mitochondrion Phoetalia pallida. ORGANISM Mitochondrion Phoetalia pallida. REFERENCE 1 (bases 1 to 432) AUTHORS Kambhampati,S. TITLE sequence of mitochondrial ribosomal RNA genes A phylogeny of cockroaches and related insects based on DNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 432) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17815 NCBI gi: 623313 BASE COUNT 147 a 46 c 69 g 170 t 4781 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCUA-UUAU| --UUu-aug- ---------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaau)u a-------uu 2701 a-u|-aa|AC U-UGAG-UAG UAUUAGU(-- -uaug-a)UC UUG--AAACU UAAAGAAU-U 2761 UG|GCGGUA- UUUUAG--UC UAUUUAGA|G GAAUCUGU-C |CCAUA--AU CG(AUAAUCC 2821 G--------- ----)CGUUG G-ACCUUUCU UAAUUUAUUU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------AAU AUG-UA|UA- 3121 |CC|-GC--C |G------UU GA-UA|a-aa auc-|uuu(u --ua-)ggg- -----(uau- 3181 g--)------ --ugauuuuu uug--auau- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuauu- 3781 -------a-u auaauC-UUU C-AGGUCAAG G|UGCA|GUU UAU------- ---------A 3841 A-U-UA-AG- -A-GGU--GA -UGGAUUACA AU--au---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu aua-u)---- ---------- ---------- ----auauau 4021 ---------- ------ACGA --AUUAU-UA A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAU-uu) A-UU-A--AU -A--UGAAG- -GUGGAUUUA 4141 A-U--AGUAA U-AUUAUG(- -uaga-uu-- --)AUUAAUA U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--AGCU 4261 CUAAAA-UA- UGCACACA-U -CGCCCGUCA C-UCU--CGU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(au-aa-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- GAUG-AGA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.G.porte 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Gromphadorhina portentosa.; . ACCESSION U17788 KEYWORDS . SOURCE Mitochondrion Gromphadorhina portentosa. ORGANISM Mitochondrion Gromphadorhina portentosa. REFERENCE 1 (bases 1 to 425) AUTHORS Kambhampati,S. TITLE sequence of mitochondrial ribosomal RNA genes A phylogeny of cockroaches and related insects based on DNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 425) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17788 NCBI gi: 623286 BASE COUNT 139 a 50 c 81 g 155 t 4788 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCUA-UUAU| --UUU-AAA- ug-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaaa)u u--------g 2701 u-a|-ga|AU U-AGAG-UAG UACuAGC(-- -ugug-g)UC UUG--AAACU UAAAGAAU-U 2761 U-|GCGGUA- UUUUAG--UC UGUUUAGA|G GAAUCUGU-C |CcuuA--AU CG(AUAGUCC 2821 G--------- ----)CGUUG A-ACCUUACU UAAUUUA--- ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------GGU AUG-UA|UA- 3121 |CC|-GC--C |G------UU GU-UG|a-aa auc-|uuu(a --ua-)ggg- -----(---- 3181 ---)------ --uaaauuuc uua-auuuu- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuauu 3781 -------a-g uaaaaA-UUU C-AGGUCAAG G|UGCA|GCU UAU------- ---------A 3841 A-U-UA-AG- -U-GGA--GA -UGGAUUACA AU--au---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua uua-g)---- ---------- ---------- ----auaa-- 4021 ---------- ------ACGA --AUUUU-UA U-A(------ ---------- ---------- 4081 ---------- ---------- uuaaa----) A-UU-G--GA -A--UGAAG- -GUGGAUUUA 4141 A-U--cugua a-auuugug- -aaga-uu-- --)UUCAGGU U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUA--GGCU 4261 CUAAAA-UG- UGCACACA-U -CGCCCGUCA C-UCU--cgu u--------- ---------- 4321 ---------- ---------- ---------- ---------- -(aauua-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- --------ag auga-guA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.N.ciner 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Nauphoeta cinerea.; . ACCESSION U17798 KEYWORDS . SOURCE Mitochondrion Nauphoeta cinerea. ORGANISM Mitochondrion Nauphoeta cinerea. REFERENCE 1 (bases 1 to 428) AUTHORS Kambhampati,S. TITLE A phylogeny of cockroaches and related insects based on DNA sequence of mitochondrial ribosomal RNA genes JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 428) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17798 NCBI gi: 623296 BASE COUNT 143 a 47 c 81 g 157 t 4785 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCUA-UUAU| --UAU-GGA- ug-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaag)u a--------a 2701 g-u|-aa|AC U-UGAG-UAG UAUUUGU(-- -uaug-g)UC UUG--AAACU UAAAGAAU-U 2761 UG|GCGGUA- UUUUAG--UC UAUUUAGA|G GAAUCUGU-C |CCGUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUG A-ACCUUACU UGAUAAAUU- ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------AGC AUG-UA|UA- 3121 |UC|-UC--C |G------UU GU-UG|a-aa auc-|uuu(- u--ua)ggg- -----(---- 3181 ---)------ --uaauuucu uga-auuuu- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uauu- 3781 -------a-a caaaaA-UUU C-AGGUCAAG G|UGCA|GUU UAU------- ---------G 3841 A-U-UA-AG- -U-GGA--GA -UGGAUUACA AU--au---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uc---)---- ---------- ---------- ----uagaua 4021 u--------- ------AUGA --AUAAU-UA A-U(------ ---------- ---------- 4081 ---------- ---------- UGUAAU-g-) A-AU-A--AU -U--UGAAG- -GUGGAUUUA 4141 A-U--AGUAA A-UUUGUG(- -aaga-uu-- --)AUUAAGU U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--AGCU 4261 CUAAGA-UG- UGCACACA-U -CGCCCGUCA C-UCG--ucg u--------- ---------- 4321 ---------- ---------- ---------- ---------- -(uaauu-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- --------aa gaug-AGA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.nivea 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Panchlora nivea.; . ACCESSION U17813 KEYWORDS . SOURCE Mitochondrion Panchlora nivea. ORGANISM Mitochondrion Panchlora nivea. REFERENCE 1 (bases 1 to 439) AUTHORS Kambhampati,S. TITLE A phylogeny of cockroaches and related insects based on DNA sequence of mitochondrial ribosomal RNA genes JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 439) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17813 NCBI gi: 623311 BASE COUNT 141 a 53 c 73 g 172 t 4774 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCUA-UAUU| ---ua--gc- uu-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(aaau)u u--------u 2701 u-u|-au|GC U-UAGG-UAG UAUUAGU(-- -uaug-g)AC UUG--AAACC UAAAGAAU-U 2761 UG|GCGGUA- UUUUAG--UC UUUUUAGA|G GAAUCUGU-C |CCUUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUG A-ACCUUACU UGGUUUUAAU ---------- ---------- 2881 (--u------ ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------AAU CUG-UA|UA- 3121 |UC|-GC--C |G------UU UU-UG|a-aa auc-|uuu(u --ca-)gag- ---------- 3181 ---------- ---gauuuuc uua--auau- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uaaac 3781 u------u-u auaauA-AUU C-AGGUCAAG G|UGCA|GUU UAU------- ---------G 3841 A-U-UA-AG- -U-GGU--GA -UGGAUUACA AU--au---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a uuc--)---- ---------- ---------- ----auuaaa 4021 ---------- ------ACGG --AUUAA-AU U-U(------ ---------- ---------- 4081 ---------- ---------- UGUAAu-uu) U-AA-U--UU -A--UGAAG- -GUGGAUUUA 4141 A-U--AGUAA U-UAUUUA(- -aaga-uu-- --)GUUAUUU U-GGC----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--AGCU 4261 CUAAAA-UG- UGUACACA-U -CGCCCGUCA C-UCU--cau u--------- ---------- 4321 ---------- ---------- ---------- ---------- -(auuaa-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------g augacauaag ucgu-AGAaU AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.surin 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Pycnoscelus surinamensis.; . ACCESSION U17822 KEYWORDS . SOURCE Mitochondrion Pycnoscelus surinamensis. ORGANISM Mitochondrion Pycnoscelus surinamensis. REFERENCE 1 (bases 1 to 429) AUTHORS Kambhampati,S. TITLE A phylogeny of cockroaches and related insects based on DNA sequence of mitochondrial ribosomal RNA genes JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 429) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17822 NCBI gi: 623320 BASE COUNT 130 a 48 c 82 g 169 t 4784 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCUU-AUAU| --UGU-AGA- uauaau---- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(uauu)u ---------- 2701 ---|-aa|AC U-UGAG-UAG UAUUAGU(-- -uaug-g)UC UUA--AAACU UAAAGAAU-U 2761 U-|GCGGUA- UCUUAG--UC UGUUCAGA|G GAAUCUGU-C |CUAUA--AU CG(AUAGUCC 2821 G--------- ----)CGUUG A-ACCUUACU UGAUUUUAUU ---------- ---------- 2881 (-------u- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------AGU AUG-UA|UA- 3121 |CC|-GC--C |G------UU UA-UU|g-aa aau-|cuu(u --uua)ggg- -----(---- 3181 ---)------ --uauuuucu uga-uauuu- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----gauu-- 3781 -------u-a guaguA-UUU C-AGGUCAAG G|UGCA|GCU UAU------- ---------A 3841 A-U-UA-AG- -U-GGA--GA -UGGAUUACA UU--uc---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-aa uaa-u)---- ---------- ---------- ----gaaua- 4021 ---------- ------AUGA --AUUAU-UA G-U(------ ---------- ---------- 4081 ---------- ---------- UGUAAU---) U-UU-A--GU -A--UGAAG- -GUGGAUUUG 4141 A-U--AGUAA U-UUUGUA(- -uaua-uu-- --)AUUGUUG U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAG--AGCU 4261 CUAAGA-UG- UGCACACA-U -CGCCCGUCG C-UCU--CGU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(aauua-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------a GAUG-AGA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.tesse 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Archimandrita tessellata.; . ACCESSION U17762 KEYWORDS . SOURCE Mitochondrion Archimandrita tessellata. ORGANISM Mitochondrion Archimandrita tessellata. REFERENCE 1 (bases 1 to 431) AUTHORS Kambhampati,S. TITLE A phylogeny of cockroaches and related insects based on DNA sequence of mitochondrial ribosomal RNA genes JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 431) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17762 NCBI gi: 623260 BASE COUNT 146 a 47 c 79 g 159 t 4782 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCUA-UAUA| ----u--aa- ug-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aauu)u a--------- 2701 --a|-ag|GC U-UAAG-UAG UAGUAGU(-- -uaug-a)UC UUG--AAACU UAAAGAAU-U 2761 UG|GCGGUA- UUUUAG--UC UAUUUAGA|G GAAUCUGU-C |CCGUA--AU CG(AUAGUCC 2821 A--------- ----)CGUGG A-ACCUAACU UGAUUAAUAA ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------UGU AUG-UA|UA- 3121 |CC|-GC--C |G------UU UA-UU|g-aa uau-|uuu(u --uua)gga- -----(-ga- 3181 a--)------ --uauuuucu uaa-aauua- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uugau 3781 u------a-a auuuuA-UUU C-AGGUCAAG G|UGCA|GCU AAU------- ---------A 3841 A-U-UA-AG- -G-GGU--GA -UGGAUUACA AU--au---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu uaa-g)---- ---------- ---------- ----guaa-- 4021 ---------- ------ACGA --AUUAU-AG U-U(------ ---------- ---------- 4081 ---------- ---------- ucuaac---) A-GU-U--AU -A--UAAAG- -GUGGAUUUA 4141 A-U--AGUAA U-UUUUUG(- -uaga-uu-- --)GUAGAUG U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--AGCU 4261 CUAGAA-UG- UGUACACA-U -CGCCCGUCA C-UCU--CAU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(aaauu-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ------uaaa AGUG-AGA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Da.punc 5213 bp RNA RNA 02-SEP-1994 DEFINITION Mitochondrion Dasyprocta punctata.. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Dasyprocta punctata. ORGANISM Mitochondrion Dasyprocta punctata. REFERENCE 1 (bases 1 to 763) AUTHORS Nedbal,M.A., Allard,M.W. and Honeycutt,R.L. TITLE from the Mitochondrial 12S rRNA Gene Molecular Systematics of Hystricognath Rodents: Evidence JOURNAL Mol. Phylogenet. Evol. 3 (1994) In press STANDARD No information REFERENCE 2 (bases 1 to 763) AUTHORS Nedbal,M.A. TITLE Direct Submission JOURNAL Submitted (20-JUL-1994) Michael A. Nedbal, Wildlife and Fisheries, Texas A&M University, Rm 210 Nagle Hall, College Station, TX 77843, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U12453 BASE COUNT 287 a 167 c 131 g 178 t 4450 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~--~~ -~~~-~-~GC 721 -AAGa----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cuc c)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- uCUCCCCGGU GAAAA---UG C|CCU-Uuua --ac-ca--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(---caa- -----)---- 1261 ---------- ---------- --ag--gau- g-aAAGGAGC |--------- gGGUAUCA-- 1321 -AGCACAC-- -----(uaau ua-------- ---------- ---------- ------)--- 1381 ---GU|---A GCUCA--CAA C|GCCUU-GC --|------- (-uuu--)-- -------GC| 1441 CACA------ ---------- ---------- -|-CCCC--( CAuG-)--GA AA-----C-A 1501 GCA|GUA-AU AAAAAUUAAG C-AAUAAAC( ---------- ----GAAA)G UUUGA-CUA| 1561 A|-GUUA-U- AC-ACU---a gcaaaaa--- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GGGUU|-GGU 1921 -AAA-U---U UCGU-G(-CC AGCCACC-GC -GGU-CA)-U ACGAUU|--- -AAC-CCA-- 1981 AACUA-AUAA A--------a ccCGGC|GUA AAGAGUGUu- -uuaga---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------aa-- ---aacauaa aauaag--ac -----|UAAA AUUUAU-CUA ----AGUC(G 2341 UAGAA)AACa cc-------A GAUA-AAAua cau------- -----acuga -aAC(-GAAA 2401 -)GU|a---- ----gucuua ---cuaua-- ---------- ucu-gaauAC ACGAA-AGCU 2461 A-GAA---UC CAAACUGGG( AUUAGAUAC) CCCA-CUAU| -GUCU-AGC- CAUAAA-CAU 2521 A--AAAA-UU |UU|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --a(uaac)a a---A-AAUU 2701 C-U|--C|GC C-CGAG-AAC UACUAGC(-- -CACA--)GC UUA--AAACU CAAAGGAC-U 2761 UG|GCGGUG- CUUUACA-CC CACCUAGA|G GAGCCUGU-U |CUAUA--AU CG(AUAAACC 2821 C--------- ----)CGAUA C-ACCUCACC ACCCCUUGCU ---------- ---------- 2881 (-------aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---C---AGC UUA-UA|UA- 3121 |CC|-GC--C |A------UC UU-CA|G-CA AAC-|CCU(A --UUA)UGG- -----(aac- 3181 aa-)------ c-aGUAAGCU UAA-CUAU-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----caaca- 3781 ---------A UAAAAA-CGU U-AGGUCAAG G|UGUA|GCC UAU------- ---------G 3841 G-G-GU-GG- GA-AGA--AA -UGGGCUACA UU--UUCUU- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au ca---)---- ---------- ---------- AAG-AAcauu 4021 cu-------- ------ACGC --AAAUC-CU C-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAc---) U-ga-g--GA -U--AUAAG- -GAGGAUUUA 4141 G-U--AGUAA A-UUAAGA(- acaga-ga-- --)GCUUAAU U-G~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.E.aztec 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Epilampra azteca.; . ACCESSION U17784 KEYWORDS . SOURCE Mitochondrion Epilampra azteca. ORGANISM Mitochondrion Epilampra azteca. REFERENCE 1 (bases 1 to 430) AUTHORS Kambhampati,S. TITLE A phylogeny of cockroaches and related insects based on DNA sequence of mitochondrial ribosomal RNA genes JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 430) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17784 NCBI gi: 623282 BASE COUNT 147 a 48 c 75 g 160 t 4783 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCUA-UAUU| ---ua--ga- uu-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaau)u a--------u 2701 g-a|-gg|AC U-UGAG-UAG UAUUAGU(-- -uagg-a)UC UUG--AAACU UAAAGAAU-U 2761 UG|GCGGUA- UCUUAG--UC UGUUUAGA|G GAAUCUGU-C |CCGUU--AU CG(AUAAUCC 2821 A--------- ----)CGUUG A-ACCUUACU UAAUUAAAU- ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------UAU UUG-UA|UA- 3121 |CC|-GC--C |G------UU UAGUG|a-aa auc-|uuu(c --ua-)ggg- -----(-ua- 3181 a--)------ --aaauuuuc agaagauac- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuuu- 3781 -------a-u auaauA-UUU C-AGGUCAAG G|UGCA|GUU UAU------- ---------A 3841 U-U-UA-AG- -U-GGA--GA -UGGAUUACA AU--au---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu uaa-g)---- ---------- ---------- ----auaa-- 4021 ---------- ------AUGA --AUUUU-AA A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAUa---) A-UU-U--UU -A--UGAAG- -GUGGAUUUA 4141 A-U--AGUAA U-UAUCUA(- -aaua-uu-- --)AUUAUUA U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AAA--AGCU 4261 CUAAGA-UG- UGUACACA-U -CGCCCGUCA C-UCU--CGU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(aguuu-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- --------aa GAUG-AGA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.E.posti 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Eublaberus posticus.; . ACCESSION U17786 KEYWORDS . SOURCE Mitochondrion Eublaberus posticus. ORGANISM Mitochondrion Eublaberus posticus. REFERENCE 1 (bases 1 to 431) AUTHORS Kambhampati,S. TITLE sequence of mitochondrial ribosomal RNA genes A phylogeny of cockroaches and related insects based on DNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 431) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17786 NCBI gi: 623284 BASE COUNT 146 a 46 c 76 g 163 t 4782 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCUA-UUAU| --UUG-AAA- u--------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaau)g u--------u 2701 a-a|-au|AC U-UAGG-UAG UAAUAGA(-- -uaug-a)AC UUG--AAACC UAAAGAAU-U 2761 UG|GCGGUA- UUUUAG--UC UAUUUAGA|G GAAUUUGU-C |CCGUG--AU CG(AUAGUCC 2821 U--------- ----)CGUUG A-ACCUAACU UAAUUAAA-- ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------UGU AUG-UA|UA- 3121 |CC|-GC--C |G------UU UA-UG|a-ag auu-|uuu(u --ua-)gga- -----(---- 3181 ---)------ u-uuauuuuc uugauauau- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uugu- 3781 -------a-u auauaA-UUU C-AGGUCAAG G|UGCA|GCU UAU------- ---------A 3841 A-U-UA-AG- -U-GGU--GA -UGGAUUACA AU--gc---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua uaa-a)---- ---------- ---------- ----gcau-- 4021 ---------- ------AUGA --AUUAG-UA A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) A-UU-A--UU -A--UGAAG- -GUGGAUUUA 4141 A-U--AGUAA U-GUUUUU(- -uaga-uu-- --)AUAAAUA U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUA--AGCU 4261 CUAGAA-UG- UGCACACA-U -GUCCCGUCA C-UCU--CGU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(aaauu-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ----uugaaa AUUG-AGA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.phora 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Phortioeca phoraspoides.; . ACCESSION U17820 KEYWORDS . SOURCE Mitochondrion Phortioeca phoraspoides. ORGANISM Mitochondrion Phortioeca phoraspoides. REFERENCE 1 (bases 1 to 435) AUTHORS Kambhampati,S. TITLE sequence of mitochondrial ribosomal RNA genes A phylogeny of cockroaches and related insects based on DNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 435) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17820 NCBI gi: 623318 BASE COUNT 148 a 47 c 72 g 168 t 4778 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCUA-UUAU| --UAA-AAA- uu-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaau)u u--------a 2701 a-a|-ag|AC U-UGAG-UAG UAAUAGU(-- -uaug-g)UC UUG--AAACU UAAAGAAU-U 2761 UG|GCGGUA- CUUUAG--UC UAUUUAGA|G GAAUCUGU-C |CCUUA--AU CG(AUAGUCC 2821 A--------- ----)CGUUA A-ACCUAACU UGAUUUUAUU ---------- ---------- 2881 (-------u- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------AAU UUG-UA|UA- 3121 |UC|-GC--C |G------UU UU-AU|g-aa aau-|cuu(u --uua)ggg- -----(ga-- 3181 ---)------ --aauuuucu uua-uauuu- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----gauu-- 3781 -------u-u auaauA-UUU C-AGGUCAAG G|UGCA|GUU UAU------- ---------A 3841 U-U-CA-AG- -G-GGA--GA -UGGAUUACA AU--ac---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(uuu aaa-u)---- ---------- ---------- ----guuaa- 4021 ---------- ------AUGG --AUUAU-AA G-A(------ ---------- ---------- 4081 ---------- ---------- UGAAUA-aa) U-UU-U--AU -A--UGAAA- -GUGGAUUUA 4141 A-U--AGUAA U-AUUUAA(- -uaua-uu-- --)AUAAUUA U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--AGCU 4261 CUAAAG-UG- UGUACACA-U -CGCCCGUCA C-UCU--CGu u--------- ---------- 4321 ---------- ---------- ---------- ---------- -(gauuu-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- --------aa g-CG-AGA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.R.mader 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Rhyparobia maderae.; . ACCESSION U17826 KEYWORDS . SOURCE Mitochondrion Rhyparobia maderae. ORGANISM Mitochondrion Rhyparobia maderae. REFERENCE 1 (bases 1 to 425) AUTHORS Kambhampati,S. TITLE A phylogeny of cockroaches and related insects based on DNA sequence of mitochondrial ribosomal RNA genes JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 425) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17826 NCBI gi: 623324 BASE COUNT 146 a 49 c 77 g 153 t 4788 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCUA-UUAU| --UUU-GAA- uauaau---- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(-aau)- ---------- 2701 --a|-ua|UC U-UAAG-UAG UAAUAGA(-- -uaag-g)UC UUG--AAACU UAAAGAAU-U 2761 UG|GCGGUA- UUUUAG--UC UAUUUAGA|G GAAUCUGU-C |CCGUA--AU CG(AUAGUCC 2821 A--------- ----)CGUUG G-ACCUUACU UAAUUGAU-- ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------GGU AUG-UA|UA- 3121 |CC|-GC--C |G------UU GU-UG|a-aa auc-|uua(a --ua-)gag- -----(---- 3181 ---)------ --caauuucu uaa-uuuuu- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuuu-- 3781 -------a-g uaaaaA-UUU C-AGGUCAAG G|UGCA|GCU UAU------- ---------G 3841 A-U-UA-AG- -A-GGA--GA -UGGAUUACA AU--au---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu uaa-a)---- ---------- ---------- ----auag-- 4021 ---------- ------AUGA --AUUUU-UA U-U(------ ---------- ---------- 4081 ---------- ---------- AGAAAU---) A-GU-U--AA -U--UCAAG- -GUGGAUUUA 4141 A-U--AGUAA A-UUUGUA(- -aaga-uu-- --)GUCAAGU U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -auaa-AGCU 4261 CUAUAA-UG- UGCACACA-U -CGCCCGUCA C-UCU--CGU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(aauua-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------a GGUG-AGA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.lampy 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Schultesia lampyridiformis.; . ACCESSION U17828 KEYWORDS . SOURCE Mitochondrion Schultesia lampyridiformis. ORGANISM Mitochondrion Schultesia lampyridiformis. REFERENCE 1 (bases 1 to 434) AUTHORS Kambhampati,S. TITLE A phylogeny of cockroaches and related insects based on DNA sequence of mitochondrial ribosomal RNA genes JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 434) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17828 NCBI gi: 623326 BASE COUNT 148 a 49 c 75 g 162 t 4779 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCA--UCAU| --AUA-GAG- gauu------ 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaag)u ua-------- 2701 a-u|-au|AC U-uUAG-UAG UAUUAGU(-- -uuauga)UC UUG--AAACU UAAAGAAU-U 2761 UG|GCGGUA- UCUUAG--UC UAUUUAGA|G GAAUCUGU-C |CCGUG--AU CG(AUAGUCC 2821 A--------- ----)CGUUG A-AACUUACU UAAUUUUAU- ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------UAU UUG-UA|UA- 3121 |CC|-GC--C |G------UU UU-AU|g-ag gau-|uuu(u --uu-)agg- -----(uua- 3181 ---)------ --uauccuca gaa-auuu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---uaauua- 3781 ---------a aaUAUA-UUU C-AGGUCAAG G|UGCA|GUA AAU------- ---------A 3841 A-U-UA-AG- -A-GGU--GA -UGGAUUACA UU--au---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(aau aau-u)---- ---------- ---------- ----auaa-- 4021 ---------- ------ACGU --AAUAU-AA U-A(------ ---------- ---------- 4081 ---------- ---------- UGAAAU---) A-UU-U--AU -A--AUAAG- -GUGGAUUUA 4141 A-U--UGUAA U-GUUUUA(- -uaga-uu-- --)AAAACUA U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--AGCU 4261 CUAAGG-UG- UGUACACA-U -CGCCCGUCA C-UCU--CGU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(aaguu-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- -------uaa GGCG-AGA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.B.vaga 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Blattella vaga.; . ACCESSION U17776 KEYWORDS . SOURCE Mitochondrion Blattella vaga. ORGANISM Mitochondrion Blattella vaga. REFERENCE 1 (bases 1 to 433) AUTHORS Kambhampati,S. TITLE A phylogeny of cockroaches and related insects based on DNA sequence of mitochondrial ribosomal RNA genes JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 433) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17776 NCBI gi: 623274 BASE COUNT 139 a 48 c 77 g 169 t 4780 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCGU-AAUU| ---auuuua- ug-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaau)u a--------a 2701 u-u|-ga|AC U-UGAG-UAG UAUUAGU(-- -uaug-g)UC UUG--AAACU UAAAGAAU-U 2761 UG|GCGGUA- UUCUAG--UC UAUUUAGA|G GAAUCUGU-C |CCAUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUG G-ACCUUACU UAAUUUAUUU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------AGC AUG-UA|UA- 3121 |CC|-GC--C |G------UU UU-UG|a-ag auc-|uuu(u --aa-)gag- -----(---- 3181 ---)------ --uuauuuuu auaauauu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uauua 3781 ---------g auaauU-UUU C-AGGUCAAG G|UGCA|GUU UAU------- ---------A 3841 A-U-UA-AG- -A-GGA--GA -UGGAUUACA AU--au---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(uga uuu-a)---- ---------- ---------- ----auaa-- 4021 ---------- ------AUGG --AUUAU-UA U-C(------ ---------- ---------- 4081 ---------- ---------- uggaau-u-) G-AU-U--AU -A--UGAAG- -GUGGAUUUA 4141 A-U--AGUAA U-AUUAUU(- -aaga-uu-- --)GUUAAUA U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUG--AGCU 4261 CUAGAA-UA- UGCACACA-U -CGCCCGUCG C-UCU--CGU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(auuuu-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- -----uuuaa GCUG-AGA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.pensy 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Parcoblatta pensylvanica.; . ACCESSION U17817 KEYWORDS . SOURCE Mitochondrion Parcoblatta pensylvanica. ORGANISM Mitochondrion Parcoblatta pensylvanica. REFERENCE 1 (bases 1 to 433) AUTHORS Kambhampati,S. TITLE sequence of mitochondrial ribosomal RNA genes A phylogeny of cockroaches and related insects based on DNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 433) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17817 NCBI gi: 623315 BASE COUNT 146 a 45 c 71 g 171 t 4780 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCUU-AUAU| --UUU-GGG- uguuaa---- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(uaaa)u ---------- 2701 --u|-aa|AC U-UAAG-UAG UAUUAGA(-- -uaug-a)UC UUG--AAACU UAAAGAAU-U 2761 U-|GCGGUA- UUUUAG--UC UAUUUAGA|G GAAUCUGU-C |CCAUA--AU CG(AUAUUCC 2821 A--------- ----)CGUUG G-ACCUUACU UGAUUUAUU- ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------AAU AUG-UA|UA- 3121 |CC|-GC--C |G------UU GU-UG|a-aa auc-|uuu(u --ua-)gag- -----(ua-- 3181 ---)------ --aaauuuuu uuaauauuu- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----auu-- 3781 -------a-g auaauU-UUU C-AGGUCAAG G|UGCA|GUU UAU------- ---------A 3841 A-U-UA-AG- -U-GGU--GG -UGGAUUACA AU--au---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu aua-a)---- ---------- ---------- ----auau-- 4021 ---------- ------ACGG --AUUAU-UA A-U(------ ---------- ---------- 4081 ---------- ---------- uuuaau-u-) A-UU-A--AU -A--UAAAG- -GUGGAUUUA 4141 A-U--AGUAA U-UUUAUG(- -aaga-uu-- --)AUUAAUU U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--AGCU 4261 CUAAGA-UA- UGCACACA-U -CGCC-GUCG C-UCU--CGU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(agaaa-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ----uguuaa AACG-AGA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.palle 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Symploce pallens.; . ACCESSION U17831 KEYWORDS . SOURCE Mitochondrion Symploce pallens. ORGANISM Mitochondrion Symploce pallens. REFERENCE 1 (bases 1 to 436) AUTHORS Kambhampati,S. TITLE sequence of mitochondrial ribosomal RNA genes A phylogeny of cockroaches and related insects based on DNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 436) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17831 NCBI gi: 623329 BASE COUNT 143 a 46 c 75 g 172 t 4777 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCAA-UUAU| --UAU-AGA- uauauu---- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(----)- ---------- 2701 auu|-aa|AC U-UGAG-UAG UAUUAGU(-- -uaug-g)UC UUA--AAAGU UAAAGAAU-U 2761 UG|GCGGUA- UCUUAG--UC UGUUCAGA|G GAAUCUGU-C |CUAUA--AU CG(AUAGUCC 2821 G--------- ----)CGUUG A-ACCUUACU UGGUUUUAUU ---------- ---------- 2881 (-------u- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------AGU AUG-UA|UA- 3121 |CC|-GC--C |G------UU UA-UU|g-aa aaa-|ucu(u --uuu)agg- -----(gua- 3181 ugu)------ g-auuuuuuu gau-auu--- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uauu-- 3781 -------a-u auaauC-UUU C-AGGUCAAG G|UGCA|GUU UAU------- ---------A 3841 A-U-UA-AG- -A-GGU--GA -UGGAUUACA AU--au---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-uu aua-u)---- ---------- ---------- ----auauau 4021 ---------- ------ACGA --AUUAU-UA A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAU-uu) A-UU-A--AU -A--UGAAG- -GUGGAUUUA 4141 A-U--AGUAA U-AUUAUG(- -uaga-uu-- --)AUUAAUA U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--AGCU 4261 CUAAAA-UA- UGCACACA-U -CGCCCGUCG C-UCU--CAU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(auuuu-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- --------ua GGUG-AGA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.N.frate 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Nahublattella fraterna.; . ACCESSION U17799 KEYWORDS . SOURCE Mitochondrion Nahublattella fraterna. ORGANISM Mitochondrion Nahublattella fraterna. REFERENCE 1 (bases 1 to 429) AUTHORS Kambhampati,S. TITLE A phylogeny of cockroaches and related insects based on DNA sequence of mitochondrial ribosomal RNA genes JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 429) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17799 NCBI gi: 623297 BASE COUNT 141 a 39 c 75 g 174 t 4784 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCUA-UUAU| --UUU-UUA- ug-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaa-)g a--------- 2701 a-u|-ua|AU C-UGAG-UAG UAUUAGU(-- -uuag-g)UC UUG--AAACU UAAAGAUU-U 2761 UG|GCGGCA- UAAUAA--UC UAUUUAGA|G GAAUCUGU-U |CUAUA--AU UG(AUAGUCC 2821 G--------- ----)CAUUG A-ACCUUACU UACUUUAAUU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------AAU AUG-UA|UA- 3121 |UC|-GC--U |G------UU AU-UU|a-aa ucu-|uuu(- u--a-)ggg- -----(uua- 3181 ---)------ --aauuuuua ugu-uauuu- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uauaau 3781 -------a-a augauA-GUU C-AAGUCAAG G|UGCA|GUU UAU------- ---------A 3841 A-G-UA-AG- -U-AGA--GA -UGGAUUACA UU--au---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au uaa--)---- ---------- ---------- ----guuu-- 4021 ---------- ------GUGG --AUUAA-UU A-U(------ ---------- ---------- 4081 ---------- ---------- UGGAAU-uu) U-UG-A--UU -A--UGAAG- -GUGGAUUUA 4141 A-U--AGUAA U-UUUUUG(- -uaga-uu-- --)GUAAAAG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--AGUU 4261 CUAUAA-UG- UGUACACA-U -CGCCCGUCA C-UCU--CAU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(auuaa-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- GGUG-AGA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.N.nahu 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Nahublattella nahu.; . ACCESSION U17804 KEYWORDS . SOURCE Mitochondrion Nahublattella nahu. ORGANISM Mitochondrion Nahublattella nahu. REFERENCE 1 (bases 1 to 429) AUTHORS Kambhampati,S. TITLE sequence of mitochondrial ribosomal RNA genes A phylogeny of cockroaches and related insects based on DNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 429) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17804 NCBI gi: 623302 BASE COUNT 143 a 40 c 72 g 174 t 4784 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCUA-UUAU| --UUU-UUA- ug-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaa-)g a--------- 2701 a-u|-ua|AU C-UGAG-UAG UAUUAGU(-- -uuag-g)UC UUG--AAACU UAAAGAUU-U 2761 UG|GCGGCA- UAAUAA--UC UAUUUAGA|G GAAUCUGU-U |CUAUA--AU UG(AUAGUCC 2821 G--------- ----)CAUUG A-ACCUUACU UACUUUAAUU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------AAU AUG-UA|UA- 3121 |UC|-GC--U |G------UU AU-UU|a-aa ucu-|uu-(u --ua-)-gg- -----(gu-- 3181 ---)------ --uaaauuuu uauguuauuu ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uauaa 3781 u------a-a augauA-GUU C-AAGUCAAG G|UGCA|GUU UAU------- ---------A 3841 A-G-UA-AG- -U-AGA--GA -UGGAUUACA Uu--au---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au uaa--)---- ---------- ---------- ----guuu-- 4021 ---------- ------GUGG --AUUAA-UU A-U(------ ---------- ---------- 4081 ---------- ---------- UGGAAu-uu) U-UG-A--UU -A--UGAAG- -GUGGAUUUA 4141 A-U--aguaa u-uuuuug(- -uaga-uu-- --)guaaaa- --gua----- ---------- 4201 ---------- ---------- ---------- ---------- ------aaau -UAG--UUCU 4261 AUAAUG-UG- UACACACA-U -CGCCCGUCA C-UCU--cau u--------- ---------- 4321 ---------- ---------- ---------- ---------- -(auua--)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- -aGu-AGA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.N.aztec 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Nyctibora azteca.; . ACCESSION U17795 KEYWORDS . SOURCE Mitochondrion Nyctibora azteca. ORGANISM Mitochondrion Nyctibora azteca. REFERENCE 1 (bases 1 to 443) AUTHORS Kambhampati,S. TITLE A phylogeny of cockroaches and related insects based on DNA sequence of mitochondrial ribosomal RNA genes JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 443) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17795 NCBI gi: 623293 BASE COUNT 152 a 46 c 71 g 174 t 4770 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCUA-UUAU| --U-a-ug-- ug-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaau)u u--------a 2701 a-u|-aa|AC U-UUAU-UAG UAGUAGU(-- -uaag-u)UC UUG--AAAUU UAAAGAAU-U 2761 UG|GCGGUA- AUUCAG--UC UUUUUAGA|G GAAUCUGU-C |CCGUG--AU CG(AUAAUCC 2821 A--------- ----)CGCUG U-AACUUACU UGAUUUAU-- ---------- ---------- 2881 (--uu----- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------AGU AUG-UA|UA- 3121 |CC|-GU--C |G------UU UA-UA|a-aa ucu-|uu-(u --uag)-gg- -----(-ua- 3181 ---)------ --aauuuuuu uaa-uuuuu- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aaaua 3781 a------a-a aauuuU-UCA G---AUCAAG G|UGCA|GCU UGUaaaauaa uuacuuaauA 3841 A-U-UA-AG- -U-GGA--GA -UGGAUUACA AU--au---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- auu--)---- ---------- ---------- ----auuagu 4021 ag-------- ------AUGA --AUUAU-UU A-U(------ ---------- ---------- 4081 ---------- ---------- UGUAAu---) A-UA-G--GU -A--UGAAG- -GUGGAUUUA 4141 A-A--UGUAA U-UUUAUG(- -aaga-uu-- --)AUUAAAA U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--AGCU 4261 CUGGAC-UA- UGCACACA-U -CGCCCGUCA C-UCU--CAU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(auuu--)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- --------ua uAUG-AGA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.N.lutzi 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Nyctibora lutzi.; . ACCESSION U17801 KEYWORDS . SOURCE Mitochondrion Nyctibora lutzi. ORGANISM Mitochondrion Nyctibora lutzi. REFERENCE 1 (bases 1 to 446) AUTHORS Kambhampati,S. TITLE A phylogeny of cockroaches and related insects based on DNA sequence of mitochondrial ribosomal RNA genes JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 446) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17801 NCBI gi: 623299 BASE COUNT 147 a 46 c 75 g 178 t 4767 others ORIGIN 1 |~-------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCUA-UUAU| --UGA-UUA- ug-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaau)a u-------uu 2701 u-a|-ag|AC C-UUAA-UAU UAUUAGA(-- -uaug-a)UC UUU--AAAUU UAAAGAAU-U 2761 UG|GCGGUA- UUUCAG--UC UUUUUAGA|G GAAUCUGU-C |CCGUU--AU CG(AUAAUCC 2821 G--------- ----)CGUUG G-AACUUUCU UGACCUUAUU ---------- ---------- 2881 (--u------ ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------AAU AUG-UA|UA- 3121 |CC|-GU--C |G------UU UA-UU|a-aa auc-|uuu(u --uag)aga- -----(ua-- 3181 ---)------ --aauuuuug uaauuuuuu- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----auu-- 3781 -------a-a aaaauU-UUU C-AGAUCAAG G|UGCA|GUG AAAcaaaagu gaau-----G 3841 G-U-UAgAG- -U-GGA--GA -UGGAUUACA AU--au---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(uuu uuu--)---- ---------- ---------- ----auag-- 4021 ---------- ------ACGG --AUUAU-UU A-U(------ ---------- ---------- 4081 ---------- ---------- UGUAAa---) A-UA-A--GU -U--UGAAG- -GUGGAUUUG 4141 A-A--UGUAA A-UUUAUG(- -aaga-uu-- --)GUUAAAU U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -CUU--AGCU 4261 CUGGAA-UA- UGUACAUA-U -CUCCCGUCA C-UCU--CAU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(aauu--)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ------uuaa uAUG-GGA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.B.orien 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Blatta orientalis.; . ACCESSION U17773 KEYWORDS . SOURCE Mitochondrion Blatta orientalis. ORGANISM Mitochondrion Blatta orientalis. REFERENCE 1 (bases 1 to 436) AUTHORS Kambhampati,S. TITLE sequence of mitochondrial ribosomal RNA genes A phylogeny of cockroaches and related insects based on DNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 436) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17773 NCBI gi: 623271 BASE COUNT 139 a 47 c 69 g 181 t 4777 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCUU-AGUU| ---a--uuu- ga-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- gau(auaa)a u----uauuu 2701 u-u|-aa|CC U-AAGG-UAG UACUAGU(-- -uaag-g)UC UUG--AAACU UAAAGAAU-U 2761 UG|-CGGUA- UUAUAG--UC UAUUUAGA|G GAAUCUGU-C |CCUUA--AU UG(AUAAUCC 2821 G--------- ----)CGUUG A-ACCUUACC AAAUUUAAU- ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------UGU AUG-UA|UA- 3121 |CC|-GC--C |G------UU AU-AA|u-ga aga-|uuc(u u-uaa)gga- -----(uuu- 3181 au-)------ u-aauuuucu -ug--auuu- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----auuuu 3781 a------a-a auauuA-UUU C-AGGUCAAG G|UGCA|GUU UAU------- ---------G 3841 A-U-UU-GG- -U-GGA--GA -UGGAUUACA UU--ua---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- ----uaauua 4021 ---------- ------UUGG --AUUAU-UA A-U(------ ---------- ---------- 4081 ---------- ---------- ugaaau---) U-UU-U--UU -A--UUAAA- -UUGGAUUUA 4141 A-U--UGUAA U-UUUUUG(- -uaga-uu-- --)GUAAAAA U-GCA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--GGCU 4261 CUAGAA-UA- UGUACACA-U -CGCCCGUCA C-UCU--cau u--------- ---------- 4321 ---------- ---------- ---------- ---------- -(aauua-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------u uuuu-AGA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.ameri 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Periplaneta americana.; . ACCESSION U17805 KEYWORDS . SOURCE Mitochondrion Periplaneta americana. ORGANISM Mitochondrion Periplaneta americana. REFERENCE 1 (bases 1 to 432) AUTHORS Kambhampati,S. TITLE sequence of mitochondrial ribosomal RNA genes A phylogeny of cockroaches and related insects based on DNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 432) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17805 NCBI gi: 623303 BASE COUNT 133 a 44 c 72 g 183 t 4781 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCUA-UUAU| --UUA--ga- ua-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaau)u a--------u 2701 u-u|-ua|AC U-UGAG-UAG UAUUAGU(-- -uagg-g)UC UUG--AAACU UAAAGAAU-U 2761 UG|GCGGUA- UUUUAG--UC UUUUUAGA|G GAAUCUGU-C |CCUUA--AU CG(AUAGUCC 2821 G--------- ----)CGUUG A-ACCUUACC AGAAUUAU-- ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------UAU AUG-UA|UA- 3121 |CC|-GC--C |G------UU AU-AA|u-ga aaa-|ucu(u --uuu)aga- ------gua- 3181 aauu------ g-aauuuucu uga-uuuaa- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ------uuau 3781 -------a-u aaauuA-UUU C-AGGUCAAG G|UGCA|GUU UAU------- ---------G 3841 U-U-UU-GG- -U-GGA--GA -UGGAUUACA UU--ua---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u auu--)---- ---------- ---------- ----uauua- 4021 ---------- ------UUGG --AUUAU-UA U-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAU---) U-UU-A--UU -A--UGAAA- -UUGGAUUUA 4141 A-U--UGUAA U-UUUUUG(- -uaga-uu-- --)GUAAUAG U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--GGCU 4261 CUAAAA-UA- UGUACACA-U -CGCCCGUCG C-UCU--uau u--------- ---------- 4321 ---------- ---------- ---------- ---------- -(auuua-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------u uaau-uGA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.austr 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Periplaneta australasiae.; . ACCESSION U17807 KEYWORDS . SOURCE Mitochondrion Periplaneta australasiae. ORGANISM Mitochondrion Periplaneta australasiae. REFERENCE 1 (bases 1 to 430) AUTHORS Kambhampati,S. TITLE sequence of mitochondrial ribosomal RNA genes A phylogeny of cockroaches and related insects based on DNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 430) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17807 NCBI gi: 623305 BASE COUNT 130 a 47 c 74 g 179 t 4783 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCUA-UUAU| --UUA--ga- ua-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aauu)a u--------- 2701 u-u|-ua|AC C-UAGG-UAG UAUUAGU(-- -uaag-g)UC UUG--AAACU UAAAGAAU-U 2761 UG|GCGGUA- UUUUAG--UC UAUUUAGA|G GAAUCUGU-C |CCUUG--AU CG(AUAAUCC 2821 G--------- ----)CGUUU U-ACCUUACC AAGUUUAU-- ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------UGU AUG-UA|UA- 3121 |CC|-GC--C |G------UU AU-AA|u-ga gaa-|ucu(u --uuu)agg- ------guu- 3181 aauuaa---- u-uuucuuga auu-guuu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -------uua 3781 ---------a aauuuA-UUU C-AGGUCAAG G|UGCA|GCU UAU------- ---------A 3841 A-U-UU-GG- -U-GGA--GA -UGGAUUACA UU--ua---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u auu--)---- ---------- ---------- ----uauua- 4021 ---------- ------UUGG --AUUAU-UU A-U(------ ---------- ---------- 4081 ---------- ---------- UGGAAU---) U-UU-A--AU -A--UGAAA- -UUGGAUUUA 4141 A-U--UGUAA U-UUUUUG(- -aaga-uu-- --)GUGAAGA U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--AGCU 4261 CUAUAA-UA- UGUACACA-U -CGCCCGUCG C-UCU--cau u--------- ---------- 4321 ---------- ---------- ---------- ---------- -(auuaa-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------u uagu-uGA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.brunn 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Periplaneta brunnea.; . ACCESSION U17809 KEYWORDS . SOURCE Mitochondrion Periplaneta brunnea. ORGANISM Mitochondrion Periplaneta brunnea. REFERENCE 1 (bases 1 to 434) AUTHORS Kambhampati,S. TITLE sequence of mitochondrial ribosomal RNA genes A phylogeny of cockroaches and related insects based on DNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 434) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17809 NCBI gi: 623307 BASE COUNT 139 a 41 c 73 g 181 t 4779 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -.-------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCUA-UAUU| ---ua-gua- ua-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(-aau)a u--------- 2701 u-u|-ua|AU U-UGAG-UAG UAUUAGU(-- -uaag-g)UC UUG--AAACU UAAAGAAU-U 2761 UG|GCGGUA- UUUUAG--UC UAUUUAGA|G GAAUAUAU-A |AAUUA--AU CG(auugaau 2821 cca------- ----)CGUUG U-ACCUUACC AAUAUUGA-- ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------UUG AUG-UA|UA- 3121 |CC|-GG--C |G-----gUU AU-AA|u-ga aga-|ucc-u u-uuu)agg- ------guu- 3181 uaaa------ a-auuuucuu ga---uuua- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ------auuu 3781 u------u-a aaacuA-UUU C-AGGUCAAG G|UGCA|GUU UAU------- ---------G 3841 U-U-UU-GG- -U-GGA--GA -UGGAUUACA UU--ua---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u auu--)---- ---------- ---------- ----uauua- 4021 ---------- ------UUGG --AUUAU-UA U-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAU---) U-UU-A--UU -A--UGAAA- -UUGGAUUUA 4141 A-U--UGUAA U-UUUUUG(- -uaga-uu-- --)GUAAUGG U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--AGCU 4261 CUAAAA-UA- UGUACACA-U -CGCCCGUCA C-UCU--cau u--------- ---------- 4321 ---------- ---------- ---------- ---------- -(auua--)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ------guua guua-a-A-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.fulig 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Periplaneta fuliginosa.; . ACCESSION U17811 KEYWORDS . SOURCE Mitochondrion Periplaneta fuliginosa. ORGANISM Mitochondrion Periplaneta fuliginosa. REFERENCE 1 (bases 1 to 434) AUTHORS Kambhampati,S. TITLE sequence of mitochondrial ribosomal RNA genes A phylogeny of cockroaches and related insects based on DNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 434) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17811 NCBI gi: 623309 BASE COUNT 138 a 47 c 69 g 180 t 4779 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCU--UAUU| --Auu-uga- ---------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --g(auau)a a----auuau 2701 u-u|-ua|AC C-UAGG-UAG UAUUAGU(-- -uaag-g)UC UUG--AAACU UAAAGAAU-u 2761 U-|GCGGUA- UUUUAA--UC UAUUUAGA|G GAAUCUGU-C |CCUUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUU U-ACCUUACC AAAUUUAU-- ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------UGU AUG-UA|UA- 3121 |CC|-GC--C |G------UU AU-AA|u-ga gga-|ucu(u --uuu)aga- ------guu- 3181 aaaguu---- a-auuuucuu aa---uuu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----guuuuu 3781 -------a-a aauuuA-UUU C-AGGUCAAG G|UGCA|GCU UAU------- ---------G 3841 A-U-UU-GG- -U-GGA--GA -UGGAUUACA UU--ua---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u auu--)---- ---------- ---------- ----uauua- 4021 ---------- ------UUGA --AUUAU-UU A-U(------ ---------- ---------- 4081 ---------- ---------- UGGAAU---) U-UU-A--AU -A--UGAAA- -UUGGAUUUA 4141 A-U--UGUAA U-UUUUUG(- -aaga-uu-- --)AUAAAGA U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--AGCU 4261 CUAGAA-UA- UGUACACA-U -CGCCCGUCG C-UCU--cau u--------- ---------- 4321 ---------- ---------- ---------- ---------- -(auuaa-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------u uagu-uGA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.later 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Shelfordella lateralis.; . ACCESSION U17830 KEYWORDS . SOURCE Mitochondrion Shelfordella lateralis. ORGANISM Mitochondrion Shelfordella lateralis. REFERENCE 1 (bases 1 to 433) AUTHORS Kambhampati,S. TITLE sequence of mitochondrial ribosomal RNA genes A phylogeny of cockroaches and related insects based on DNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 433) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17830 NCBI gi: 623328 BASE COUNT 134 a 46 c 74 g 179 t 4780 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCUA-UUAU| --UUA--ga- ua-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaau)u a--------u 2701 u-u|-ua|AU U-UGAG-UAG UAUUAGA(-- -uaag-g)UC UUG--AAACU UAAAGAAU-U 2761 UG|GCGGUA- UUUUAG--UC UUUUUAGA|G GAAUCUGU-C |CCUUA--AU CG(AUAAUCC 2821 A--------- ----)CGUUG G-ACCUUACC AAAAUUGA-- ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------UGC AUG-UA|UA- 3121 |CC|-GC--C |G------UU AUaau|G-AA GAU-|CUU(U --UUA)GAG- ---uu(uaa- 3181 ---)------ a-aAUUUUCu uga--uuua- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----auuuu 3781 -------u-a aaACUA-UUU C-AGGUCAAG G|UGCA|GUU UAU------- ---------G 3841 U-U-UU-GG- -U-GGA--GA -UGGAUUACA UU--ua---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u auu--)---- ---------- ---------- ----uauua- 4021 ---------- ------UUGG --AUUAU-UA U-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAu---) U-UU-A--UU -A--UGAAA- -UUGGAUUUA 4141 A-u--UGUAA U-UUUUUG(- -uaga-uu-- --)GUAAUGG U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--AGCU 4261 CUAAAA-UA- UGUACACA-U -CGCCCGUCG C-UCU--CAU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(auuu--)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ------guua guUG-AGA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.soror 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Melanozosteria soror.; . ACCESSION U17793 KEYWORDS . SOURCE Mitochondrion Melanozosteria soror. ORGANISM Mitochondrion Melanozosteria soror. REFERENCE 1 (bases 1 to 437) AUTHORS Kambhampati,S. TITLE sequence of mitochondrial ribosomal RNA genes A phylogeny of cockroaches and related insects based on DNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 437) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17793 NCBI gi: 623291 BASE COUNT 131 a 46 c 72 g 188 t 4776 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCUA-UAUU| --uug-gua- g--------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaau)u a-----uuaa 2701 u-u|-aa|AC U-UAGG-UAG UAUUAGU(-- -uaag-g)UC UUG--AAACU CAAAGAAU-U 2761 UG|GCGGUA- UUUUAG--UC UAUUUAGA|G GAAUCUGU-C |CCUUA--AU CG(AUAGUCC 2821 G--------- ----)CGUUG U-ACCUUACC AGAUUUA--- ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------UGU AUG-UA|UA- 3121 |CC|-GC--C |G------UU AU-UU|u-ga aaa-|ucu(u --uuu)aga- -----(guu- 3181 uaa)------ u-aauuuucu aguu--uuua ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuuuu 3781 -------u-g aauuuA-UUU C-AGGUCAAG G|UGCA|GUU UAU------- ---------A 3841 A-U-UU-GG- -U-GGA--GA -UGGAUUACA UU--ua---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u au---)---- ---------- ---------- ----uaauua 4021 ---------- ------UUGA --AUUAU-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGUAAU-gu) U-GA-A--AU -A--UGAAA- -UUGGAUUUA 4141 A-U--UGUAA U-UUUUUG(- -uaga-uu-- --)GUAAUUU U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--AGCU 4261 CUAUAA-UA- UGUACACA-U -CUCCCGUCA C-UCU--CAU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(auuau-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- --------ua GUUG-AGA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.punct 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Cryptocercus punctulatus.; . ACCESSION U17779 KEYWORDS . SOURCE Mitochondrion Cryptocercus punctulatus. ORGANISM Mitochondrion Cryptocercus punctulatus. REFERENCE 1 (bases 1 to 441) AUTHORS Kambhampati,S. TITLE A phylogeny of cockroaches and related insects based on DNA sequence of mitochondrial ribosomal RNA genes JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 441) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17779 NCBI gi: 623277 BASE COUNT 123 a 45 c 77 g 196 t 4772 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CC-A-UAUU| ---uu-uua- ug-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(uaau)u a--------- 2701 --u|-uu|AC U-UGAG-UAG UAAUUGU(-- -uauu-u)UC UUG--AAACU CAAAGAAU-U 2761 UG|GCAGUA- UUUUAU--UC UGUUCAGA|G GAACCUGU-A |UUUUU--AU CG(AUAAUCC 2821 G--------- ----)CGUUG A-ACCUUACU UGGCUUAUGA ---------- ---------- 2881 (--au---gu ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------UAU UUG-UA|UA- 3121 |CC|-GC--C |G------UU GU-UU|u-ga aag-|ucu(u --uuu)aga- -----(guu- 3181 auu)------ u-aauuuucu u----guuu- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuuua 3781 uu-----u-u acuuuA-UUU C-AGGUCAUG G|UGCA|AUU UAU------- ---------A 3841 G-U-UA-AG- -U-GAU--UA -UGGGUUACA UU--gu---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua uuu--)---- ---------- ---------- ----augc-- 4021 ---------- ------UUGA --AUUGU-UA G-U(------ ---------- ---------- 4081 ---------- ---------- uguaau---) U-UU-A--AU -A--UGAAA- -UUGGAUUUG 4141 A-A--UGUAA U-UAUUAG(- -uugagaua- --)GUAAUGA U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GUUU 4261 CUGGAA-UG- UGUACAuA-U -CGCCCGUCG C-UCU--CGU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(auuua-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ----uuaaaa UAAG-AGA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.darwi 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Mastotermes darwiniensis.; . ACCESSION U17789 KEYWORDS . SOURCE Mitochondrion Mastotermes darwiniensis. ORGANISM Mitochondrion Mastotermes darwiniensis. REFERENCE 1 (bases 1 to 428) AUTHORS Kambhampati,S. TITLE sequence of mitochondrial ribosomal RNA genes A phylogeny of cockroaches and related insects based on DNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 428) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17789 NCBI gi: 623287 BASE COUNT 124 a 55 c 82 g 167 t 4785 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCUA-UAUU| --aug-aug- ---------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaau)u a--------u 2701 u-u|-aa|AC C-UGAG-UAG UAUUAGA(-- -uaug-u)UC UUG--AAACU UAAAGAAU-U 2761 UG|GCGGUA- UUUUAC--UC CUUUCAGA|G GAAUCUGU-C |CCGUA--AU CG(AUAGUCC 2821 G--------- ----)CGUUG G-ACCUUGCU UAAUUUU--- ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------UGU UUG-UA|UA- 3121 |CC|-GC--C |G------UU AU-AA|c-ga aga-|ucu(u --uuu)agg- -----(guu- 3181 g--)------ u-aauuuucu ugau-uuc-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuguu 3781 -------u-g auaauA-UUU C-AGGUCAAG G|UGCA|AUU UAU------- ---------A 3841 A-U-UA-AG- -U-GGA--GA -UGGAUUACA UU--ua---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a auu--)---- ---------- ---------- ----uauua- 4021 ---------- ------UUGG --AUUGU-UG G-U(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-uu) A-CU-A--AC -A--UAAAA- -UUGGAUUUG 4141 A-U--AGUAA U-UUGUUG(- -caga-uu-- --)GUACAAA U-GGU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCU 4261 CUAUAA-UA- UGUACACA-U -CGCCCGUCG C-UCU--CGU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(auuua-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- GGCG-AGA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.formo 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Coptotermes formosanus.; . ACCESSION U17777 KEYWORDS . SOURCE Mitochondrion Coptotermes formosanus. ORGANISM Mitochondrion Coptotermes formosanus. REFERENCE 1 (bases 1 to 435) AUTHORS Kambhampati,S. TITLE A phylogeny of cockroaches and related insects based on DNA sequence of mitochondrial ribosomal RNA genes JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 435) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17777 NCBI gi: 623275 BASE COUNT 99 a 51 c 93 g 192 t 4778 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCUA-UUAU| --UUuagaa- ug-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(uaau)u u--------- 2701 --u|-uu|GC U-UGAG-UAG UAUUAGG(-- -uaug-u)UC UUG--AAACU UAAAGAAU-U 2761 UG|GCGGUA- UCUUAU--UC CGUUCAGA|G GAAUCUGU-C |UCGUU--AU CG(AUAGUCC 2821 G--------- ----)CGUUG G-ACCUUACU UAGUUGCUAU ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------GGU UUG-UA|UA- 3121 |CC|-GC--C |G------UU UA-UU|g-au uau-|gcu(u --uu-)agg- -----(guu- 3181 uau)------ u-aauuuucu ggu-uucuu- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ------uauu 3781 -------u-u gauuuA-UUU C-AGGUCAAG G|UGCA|GCU UGU------- ---------U 3841 U-C-UA-AG- -U-GUU--AU -UGAUGGAUU AC--au---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----u>(guu cuu-u)---- ---------- ---------- ----guugu- 4021 ---------- ------UUGG --AUUAU-UG G-U(------ ---------- ---------- 4081 ---------- ---------- uggauu---) A-UU-A--GU -A--UGAAA- -UUGGAUUUG 4141 A-U--UGUAA U-GUCUUG(- -uaga-uu-- --)GUUUUCG U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUG--GGUU 4261 CUAAGA-UA- UGUACACA-U -CGCCCGUCG --UCU--CGU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(uguug-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- --------uu AAUG-a-A-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.R.flavi 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Reticulitermes flavipes.; . ACCESSION U17823 KEYWORDS . SOURCE Mitochondrion Reticulitermes flavipes. ORGANISM Mitochondrion Reticulitermes flavipes. REFERENCE 1 (bases 1 to 431) AUTHORS Kambhampati,S. TITLE sequence of mitochondrial ribosomal RNA genes A phylogeny of cockroaches and related insects based on DNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 431) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17823 NCBI gi: 623321 BASE COUNT 97 a 54 c 91 g 189 t 4782 others ORIGIN 1 |~-------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ 2461 ~~-~~~---~ ~AAACUAGG( AUUAGAUAC) CCUU-AUUA| --uuu-ugaa ug-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(uaau)- g--------- 2701 --u|-uu|GC C-UGAG-UAG UAUUAGU(-- -uaug-u)UC UUG--AAACU UAAAGAAU-U 2761 UG|GCGGUA- UCUUAU--UC CGUUCAGA|G GAACCUGU-C |UCGUU--AU CG(AUAGUCC 2821 A--------- ----)CGUUG G-ACCUUACU UGGUUGUUUA ---------- ---------- 2881 (--uu----- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------GGU UUG-UA|UA- 3121 |CC|-GC--G |U------UU AU-UG|a-uu auc-|uuu(u --ua-)ggg- -----(-uc- 3181 aua)------ --uaauuuuc uug-uuccu- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----auauu 3781 -------u-g guuugA-UUU C-AGGUCAAG G|UGCA|GCU UUC------- ---------U 3841 C-U-AA-GU- -G-UUU-UGG -UGGGUUACA UU--gu---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ua uuu--)---- ---------- ---------- ----gugu-- 4021 ---------- ------UUGG --AUUGU-UG G-U(------ ---------- ---------- 4081 ---------- ---------- UUUAAU-u-) A-CU-G--GC -A--UGAAA- -UUGGAUUUG 4141 A-U--UGUAA U-AUUUUG(- -aaga-uu-- --)GUUUUUG U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- aauu--gguu 4261 cUGAGA-UA- UGUACACA-U -CGCCCGUCG CaUCU--cgu ---------- ---------- 4321 ---------- ---------- ---------- ---------- -(uuua--)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- -uuu--GA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.relig 5213 bp RNA RNA 04-APR-1995 DEFINITION Mitochondrion Mantis religiosa.; . ACCESSION U17792 KEYWORDS . SOURCE Mitochondrion Mantis religiosa. ORGANISM Mitochondrion Mantis religiosa. REFERENCE 1 (bases 1 to 421) AUTHORS Kambhampati,S. TITLE sequence of mitochondrial ribosomal RNA genes A phylogeny of cockroaches and related insects based on DNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 2017-2020 (1995) STANDARD No information REFERENCE 2 (bases 1 to 434) AUTHORS Kambhampati,S. TITLE Direct Submission JOURNAL Submitted (29-NOV-1994) Srinivas Kambhampati, Entomology, Kansas State University, Waters Hall, Manhattan, KS 66506, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U17792 NCBI gi: 623290 BASE COUNT 152 a 45 c 70 g 167 t 4779 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~-~~--~- -~~~-~-~~~ 721 -~~~------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~)~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~-~~ -~~~-~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~--------- ~~~~~~|~~- -~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- --------~~ ~~~~-~~~-- ---------- --~~~~-~~- -~~~--~~~~ 2401 ~-~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~---~~ ~AAACUAGG( AUUAGAUAC) CCUA-UAUU| --uua-ug-- ---------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaag)u u--------a 2701 a-u|-aa|AC U-AGAG-UAU UAGUAGG(-- -uaug-g)UC UUG--AAACU UAAAGAAU-U 2761 UG|GCGGUA- UUAUAG--UC UAUUUAGA|G GAAUCUGU-U |AUGUA--AU CG(AUAGUCC 2821 A--------- ----)CGUUG A-ACCUUACU UAUAUUAU-- ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------UUC UUG-UA|UA- 3121 |CC|-GC--U |G------UU UA-UG|a-au aua-|cuu(- u--u-)agg- -----(uaa- 3181 uuuuc----- u-gaauau-- -----aau-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----auua- 3781 ---------a uuaagA-UUU C-AAGUCAAG G|UGCA|GUA AUA------- ---------U 3841 A-U-AA-GU- -U-GAA--UA -AUGGAUUAC AA--ua---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--a auu-g)---- ---------- ---------- ----uauuua 4021 u--------- ------AUGG --AUUGU-UA U-U(------ ---------- ---------- 4081 ---------- ---------- -GAAAA---) A-AU-A--AU -U--UGAAG- -GUGGAUUUA 4141 A-U--UGUAA U-UUUAUA(- -aaga-uu-- --)AUUGAAA U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- uuau--AGCU 4261 CUAUAA-UA- UGCACACA-U -CGCCCGUCG C-UCU--CAU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(acuua-)- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------u ucuuacuaaa GAUG-AGA-U AAGUCGUAAC AUAGUA~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.par.1 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Chorthippus parallelus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Chorthippus parallelus. ORGANISM Mitochondrion Chorthippus parallelus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X95574 LOCUS CPMTSTESC 6336 bp DNA INV 13-FEB-1996 DEFINITION C.parallelus mitochondrial srRNA, ND2, COI, COII, ATPase8 and 9 tRNA genes (strain ESC). ACCESSION X95574 NID g1185111 KEYWORDS AT-rich region; ATPase subunit 8; COI gene; COII gene; ND2 gene; srRNA; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Ile; tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Chorthippus parallelus. ORGANISM Mitochondrion Chorthippus parallelus Eukaryotae; mitochondrial eukaryotes; Metazoa; Arthropoda; Tracheata; Insecta; Pterygota; Orthopterodea; Orthoptera; Caelifera; Acrididae; Oedipodinae; Chorthippus. REFERENCE 1 (bases 1 to 6336) AUTHORS Szymura,J.M., Lunt,D.H. and Hewitt,G.M. TITLE The sequence and structure of the meadow grasshopper (Chorthippus parallelus) mitochondrial srRNA, ND2, COII, ATPase8, and 9 TRNA genes JOURNAL Unpublished REFERENCE 2 (bases 1 to 6336) AUTHORS Lunt,D.H. TITLE Direct Submission JOURNAL Submitted (07-FEB-1996) D.H. Lunt, University of East Anglia, Population Biology Sector, School of Biological Sciences, Norwich, NR4 7TJ, UK COMMENT Related sequence X93574. NCBI gi: 1185111 FEATURES Location/Qualifiers source 1..6336 /organism="Chorthippus parallelus" /sub_species="Erythropus" /strain="ESC" /clone="p3.4" /mitochondrion tRNA <1..13 /gene="tRNA-Val" /product="transfer RNA-Val" rRNA complement(14..807) /gene="srRNA" /product="small subunit ribosomal RNA" misc_feature 810..2320 /note="AT-rich region" tRNA 2321..2387 /gene="tRNA-Ile" /product="transfer RNA-Ile" tRNA complement(2392..2460) /gene="tRNA-Gln" /product="transfer RNA-Gln" tRNA 2462..2530 /gene="tRNA-Met" /product="transfer RNA-Met" mRNA 2531..3553 /gene="ND2" /product="NADH dehydrogenase subunit 2" tRNA 3552..3619 /gene="tRNA-Trp" /product="transfer RNA-Trp" tRNA complement(3613..3675) /gene="tRNA-Cys" /product="transfer RNA-Cys" tRNA complement(3687..3732) /gene="tRNA-Tyr" /product="transfer RNA-Tyr" mRNA 3749..5285 /gene="COI" /product="cytochrome oxidase subunit 1" tRNA 5286..5351 /gene="tRNA-Leu(UUR)" /product="transfer RNA-Leu" mRNA 5353..6036 /gene="COII" /product="cytochrome oxidase subunit 2" tRNA 6035..6098 /gene="tRNA-Asp" /product="transfer RNA-Asp" tRNA 6101..6171 /gene="tRNA-Lys" /product="transfer RNA-Lys" mRNA 6174..>6336 /gene="ATPase8" /product="ATPase subunit 8" BASE COUNT 2541 a 878 c 701 g 2216 t ORIGIN BASE COUNT 247 a 80 c 133 g 334 t 4419 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uagAAGUU 661 (UUA-)U-UC U|UGCUU-AU UUA-UUCAUU UU-UUUC-UU |UG-UA--U- -UAU-A-UGC 721 -AAG------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|u uuu----uuu agacu----- -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- |--------- ---------- 1321 ---------- -----(---- ---------- ---------- ---------- ------)--- 1381 -----|---- ---------- -|-------- --|------- (------)-- ------aaaa 1441 guucuuuuu- ---------- ---------- -|-------( -----)---- ---------- 1501 GCA|GUG-AU UUAAUUUAAU --UAUCAAG( ---------- ----UGAU)U UUGGA-AUU| 1561 A|-GCA--AU UG-AUU-ua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GUAUU|-GGC 1921 -AUA-U---U UCGU-G(-CC AGCAGCC-GC -GGU-UA)-U ACGAUU|--- -AAU-GCA-- 1981 AGUGA-AUAU A--------- uuuGGU|ua- --aaacaguu ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------au uuuaugauuu uaggau--ua -----|AUUU AUAAAU-UUU ----UAAG(G 2341 UGGAA)UUU- --------ua auuu-uau-- u--------- --------ug --ug(-auuc 2401 u)ua|uua-- ----ugauu- ---------- ---------- --------cu gugaa-aCUU 2461 A-GAU---AA UAAACUAGG( AUUAGAUAC) CCUA-UUAU| --UUU-AAG- ---------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(guua)a ucau------ 2701 g-u|-uu|AC C-AGGG-UAG UAUUAGU(-- -uagg-a)UC UUA--AAACU CAAAGAAU-U 2761 UG|GCGGUA- UUUCAU--UC CAUUUAGA|G GAACCUAU-C |CCGUA--AU UG(AUAAUAC 2821 A--------- ----)CGAUU A-ACUAUACU UAAUUUAUU- ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------UGU UUG-UA|UA- 3121 |UC|-UC--C |G------UU AU-CA|G-AA AAU-|CUU(U A-UUG)GAG- -----(-uu- 3181 a--)------ U-AAUUUUCU UGA-UUUAU- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aauu- 3781 -------a-u aaaauA-UUU C-AGGUCAAG G|UGCA|GCU UAU------- ---------- 3841 A-U-UA-AG- -A-GGA--GG -UGGGUUACA AU--aa---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(auu uag--)---- ---------- ---------- ----uuau-- 4021 ---------- ------ACGU --AUUUA-AU G-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAG-a-) C-UA-U--UA -A--UAAAG- -GUGGAUUUA 4141 A-U--AGUAA U-UUGAUU(- -uauu-ua-- --)AUUCAAU U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--GGCU 4261 CUGAGG-UG- UGUACACA-U -CGCCCGUCA C-UCU--CAU U--------- ---------- 4321 ---------- ---------- -auugauua- aucuauuuu- -(aauuua)a aguuaguuuc 4381 aguuu-a--- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- GAUG-AGA-U AAGUCGUAAC AUAGUAGA-U GUA-CU(GGA 4621 -A)AGU-GU- AUCUAGAAAG UUUAC----| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.par.2 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Chorthippus parallelus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Chorthippus parallelus. ORGANISM Mitochondrion Chorthippus parallelus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X95575 LOCUS CPMTSTNOR 6336 bp DNA INV 13-FEB-1996 DEFINITION C.parallelus mitochondrial srRNA, ND2, COI, COII, ATPase8 and 9 tRNA genes (strain NOR). ACCESSION X95575 NID g1185112 KEYWORDS AT-rich region; ATPase subunit 8; COI gene; COII gene; ND2 gene; srRNA; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Ile; tRNA-Leu(UUR); tRNA-Lys; tRNA-Met; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Chorthippus parallelus. ORGANISM Mitochondrion Chorthippus parallelus Eukaryotae; mitochondrial eukaryotes; Metazoa; Arthropoda; Tracheata; Insecta; Pterygota; Orthopterodea; Orthoptera; Caelifera; Acrididae; Oedipodinae; Chorthippus. REFERENCE 1 (bases 1 to 6336) AUTHORS Szymura,J.M., Lunt,D.H. and Hewitt,G.M. TITLE The sequence and structure of the meadow grasshopper (Chorthippus parallelus) mitochondrial srRNA, ND2, COII, ATPase8, and 9 TRNA genes JOURNAL Unpublished REFERENCE 2 (bases 1 to 6336) AUTHORS Lunt,D.H. TITLE Direct Submission JOURNAL Submitted (07-FEB-1996) D.H. Lunt, University of East Anglia, Population Biology Sector, School of Biological Sciences, Norwich, NR4 7TJ, UK COMMENT Related sequence X93574. NCBI gi: 1185112 FEATURES Location/Qualifiers source 1..6336 /organism="Chorthippus parallelus" /sub_species="parallelus" /strain="NOR" /clone="p6.21" /mitochondrion tRNA <1..13 /gene="tRNA-Val" /product="transfer RNA-Val" rRNA complement(14..807) /gene="srRNA" /product="small subunit ribosomal RNA" misc_feature 810..2320 /note="AT-rich region" tRNA 2321..2387 /gene="tRNA-Ile" /product="transfer RNA-Ile" tRNA complement(2392..2460) /gene="tRNA-Gln" /product="transfer RNA-Gln" tRNA 2462..2530 /gene="tRNA-Met" /product="transfer RNA-Met" mRNA 2531..3553 /gene="ND2" /product="NADH dehydrogenase subunit 2" tRNA 3552..3619 /gene="tRNA-Trp" /product="transfer RNA-Trp" tRNA complement(3613..3675) /gene="tRNA-Cys" /product="transfer RNA-Cys" tRNA complement(3687..3732) /gene="tRNA-Tyr" /product="transfer RNA-Tyr" mRNA 3749..5285 /gene="COI" /product="cytochrome oxidase subunit 1" tRNA 5286..5351 /gene="tRNA-Leu(UUR)" /product="transfer RNA-Leu" mRNA 5353..6036 /gene="COII" /product="cytochrome oxidase subunit 2" tRNA 6035..6098 /gene="tRNA-Asp" /product="transfer RNA-Asp" tRNA 6101..6171 /gene="tRNA-Lys" /product="transfer RNA-Lys" mRNA 6174..>6336 /gene="ATPase8" /product="ATPase subunit 8" BASE COUNT 2341 a 839 c 674 g 2080 t 402 others ORIGIN BASE COUNT 247 a 81 c 133 g 333 t 4419 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --uagAAGUU 661 (UUA-)U-UC U|UGCUU-AU UUA-UUCAUU UU-UUUC-UU |UG-UA--U- -UAU-A-UGC 721 -AAG------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|u uuu----uuu agacu----- -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- |--------- ---------- 1321 ---------- -----(---- ---------- ---------- ---------- ------)--- 1381 -----|---- ---------- -|-------- --|------- (------)-- ------aaaa 1441 guucuuuuu- ---------- ---------- -|-------( -----)---- ---------- 1501 GCA|GUG-AU UUAAUUUAAU --UAUCAAG( ---------- ----UGAU)U UUGGA-AUU| 1561 A|-GCA--AU UG-AUU-ua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GUAUU|-GGC 1921 -AUA-U---U UCGU-G(-CC AGCAGCC-GC -GGU-UA)-U ACGAUU|--- -AAU-GCA-- 1981 AGUGA-AUAU A--------- uuuGGU|ua- --aaacaguu ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------au uuuaugauuu uaggau--ua -----|AUUU AUAAAU-UUU ----UAAG(G 2341 UGGAA)UUU- --------ua auuu-uau-- u--------- --------ug --ug(-auuc 2401 u)ua|uua-- ----ugauu- ---------- ---------- --------cu gugaa-aCUU 2461 A-GAU---AA UAAACUAGG( AUUAGAUAC) CCUA-UUAU| --UUU-AAG- ---------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(guua)a ucau------ 2701 g-u|-uu|AC C-AGGG-UAG UAUUAGU(-- -uagg-a)UC UUA--AAACU CAAAGAAU-U 2761 UG|GCGGUA- UUUCAU--UC CAUUUAGA|G GAACCUAC-C |CCGUA--AU UG(AUAAUAC 2821 A--------- ----)CGAUU A-ACUAUACU UAAUUUAUU- ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------UGU UUG-UA|UA- 3121 |UC|-UC--C |G------UU AU-CA|G-AA AAU-|CUU(U A-UUG)GAG- -----(-uu- 3181 a--)------ U-AAUUUUCU UGA-UUUAU- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aauu- 3781 -------a-u aaaauA-UUU C-AGGUCAAG G|UGCA|GCU UAU------- ---------- 3841 A-U-UA-AG- -A-GGA--GG -UGGGUUACA AU--aa---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(auu uag--)---- ---------- ---------- ----uuau-- 4021 ---------- ------ACGU --AUUUA-AU G-G(------ ---------- ---------- 4081 ---------- ---------- UGAAAG-a-) C-UA-U--UA -A--UAAAG- -GUGGAUUUA 4141 A-U--AGUAA U-UUGAUU(- -uauu-ua-- --)AUUCAAU U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--GGCU 4261 CUGAGG-UG- UGUACACA-U -CGCCCGUCA C-UCU--CAU U--------- ---------- 4321 ---------- ---------- -auugauua- aucuauuuu- -(aauuua)a aguuaguuuc 4381 aguuu-a--- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- GAUG-AGA-U AAGUCGUAAC AUAGUAGA-U GUA-CU(GGA 4621 -A)AGU-GU- AUCUAGAAAG UUUAC----| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.L.migra 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Locusta migratoria. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Locusta migratoria. ORGANISM Mitochondrion Locusta migratoria. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X80245 LOCUS MTLMCOMP 15722 bp DNA circular INV 06-FEB-1996 DEFINITION L.migratoria mitochondrion complete genome. ACCESSION X80245 NID g1182014 KEYWORDS ATPase 6; ATPase 8; COI gene; COII gene; COIII gene; cytochrome b; D-loop region; ND1 gene; ND2 gene; ND3 gene; ND4 gene; ND4L gene; ND5 gene; ND6 gene; repeat region; rRNA large subunit gene; rRNA small subunit gene; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-fMet; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu; tRNA-Lys; tRNA-Phe; tRNA-Pro; tRNA-Ser; tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE migratory locust. ORGANISM Mitochondrion Locusta migratoria Eukaryotae; mitochondrial eukaryotes; Metazoa; Arthropoda; Tracheata; Insecta; Pterygota; Orthopterodea; Orthoptera; Caelifera; Acrididae; Locustinae; Locusta. REFERENCE 1 (bases 1 to 15722) AUTHORS Flook,P.K., Rowell,C.H.F. and Gellissen,G. TITLE The sequence, organisation and evolution of the Locusta migratoria mitochondrial genome JOURNAL J. Mol. Evol. 41, 928-941 (1995) REFERENCE 2 (bases 1 to 15722) AUTHORS Flook,P.K. TITLE Direct Submission JOURNAL Submitted (02-SEP-1994) P.K. Flook, Zoologisches Institut der Univ. Basel, Rheinsprung 9, Basel, SWITZERLAND REMARK sequence revised by author, 25-OCT-94 COMMENT Sequences overlapping with: X13975, X05286, X05287. NCBI gi: 1182014 FEATURES Location/Qualifiers source 1..15722 /organism="Locusta migratoria" /sub_species="migratorioides" /mitochondrion tRNA 1..65 /anticodon=(pos:30..32,aa:Ile) /product="transfer RNA-Ile" tRNA complement(63..131) /anticodon=(pos:99..101,aa:Gln) /product="transfer RNA-Gln" tRNA 131..199 /anticodon=(pos:161..163,aa:Met) /product="transfer RNA-f-Met" CDS 200..1228 /gene="ND2" /note="NCBI gi: 1182024" /codon_start=1 /transl_table=5 /db_xref="PID:g1182024" /translation="MYNNSMKLLFLSSLMMGTYLSISSTPWLGTWMGLEINLLSIIPM LTDNKNSMINEPAIKYFIIQSMASTMLLISILIIQMKYMMWWDNKNIPSMMIMSSMMM KMGAAPFHFWLPEVMSSTSWINCLMLMTWQKIAPMMTMSYCIKMSSFLFVVIMMGIIV GAMGGLNQTSLRQILAYSSISHLGWMISSMTISENTWEFYFLIYSTLNVIIIFMFKTM NLFFLNQIYSASYFKTEIKFMMMTSLLSLGGLPPMLGFLPKWIVMQSLIDNKMTALVL LMITFTTITLYYYMRISFSAIIMLHNENSWLTSIKMNKLVVALPILSMISTMGLICTS NFMLLLSS" tRNA 1219..1285 /anticodon=(pos:1249..1251,aa:Trp) /product="transfer RNA-Trp" tRNA complement(1278..1344) /anticodon=(pos:1313..1315,aa:Cys) /product="transfer RNA-Cys" tRNA complement(1355..1422) /anticodon=(pos:1388..1390,aa:Tyr) /product="transfer RNA-Tyr" unsure 1429..1432 /note="4bp start codon for COI" CDS <1433..2968 /gene="COI" /note="NCBI gi: 1182015" /codon_start=1 /transl_table=5 /db_xref="PID:g1182015" /translation="TQKWLFSTNHKDIGTLYFMFGAWAGMVGTSMSMIIRAELGQPGT MINDDQLYNVIITAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWL LPPSLTLLLMSSVVDNGAGTGWTVYPPLASVIAHSGASVDLAIFSLHLAGVSSILGAI NFITTAINMRSNNMTLDQTPLFVWSVAITALLLLLSLPVLAGAITMLLTDRNLNTSFF DPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHIVCQESGKIESFGTIGMIYAML SIGLMGFIVWAHHMFTVGMDVDTRAYFTSATMIIAVPTGIKVFSWMATLYGTKFKFNP PLLWALGFIFLFTMGGLTGLVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGII QWYPLFTGLTMNSKWLKIQFTIMFIGVNLTFFPQHFLGLAGMPRRYSDYPDAYTSWNV ISSIGSTISITGIIMFILIMWESMIKQRNVFIWTNMSSSTEWLQNNPPAEHSYSELPL INL" tRNA 2971..3036 /anticodon=(pos:3000..3002,aa:Leu) /product="transfer RNA-Leu" CDS 3041..3724 /gene="COII" /note="NCBI gi: 1182026" /codon_start=1 /transl_table=5 /db_xref="PID:g1182026" /translation="MATWSNLSLQDGASPLMEQLSFFHDHTMIDLLLITMIVGYSLSY MLLTKYTNRNMLHGHLIETIWTALPAITLIFIALPSLRLLYLLDDSSDAMITIKTIGR QWYWSYEYSDFINVEFDTYMTPENELNTDEFRLLEVDNRTTLPMNTEVRVLTSASDVL HSWAVPALVLKIDATPGRLNQGMFMINRPGLFFGQCSEICGANHSFMPIVIESTSIKL FIKWLSNMM" tRNA 3723..3786 /anticodon=(pos:3753..3755,aa:Asp) /product="transfer RNA-Asp" tRNA 3790..3860 /anticodon=(pos:3820..3822,aa:Lys) /product="transfer RNA-Lys" CDS <3878..4036 /note="NCBI gi: 1182021" /codon_start=1 /transl_table=5 /product="ATPase 8" /db_xref="PID:g1182021" /translation="IPQMSPMMWFSLFIMFSMTMMLFNQLNFFSYKPNKIMSSNNKIK KKNINWMW" CDS 4030..4707 /note="NCBI gi: 1182019" /codon_start=1 /transl_table=5 /product="ATPase 6" /db_xref="PID:g1182019" /translation="MMTNLFSTFDPSTNLFNLSLNWTSTFLGLLLIPSMFWLMPSRIN ILWNKMNLNLHNEFKTLLGKNSFQGSTLILISIFIMMLFNNFMGLFPYIFTSTSHMTL TFSIALPMWMSFMLFGWINNTNHMFTHLVPQGTPNALMSFMVLIETISNVIRPGTLAV RLAANMIAGHLLLTLLGNTGPSLTTSIMLFLIIGQMLLLILESAVAMIQAYVFSILST LYSSEVY" CDS 4712..5503 /gene="COIII" /note="NCBI gi: 1182017" /codon_start=1 /transl_table=5 /db_xref="PID:g1182017" /translation="MLTNNNNHPFHMVDYSPWPLTGAIGAMILTSGMTKWFHTFNMNL LMIGMTVIVLTMIQWWRDVVREGTFQGLHTKLVSKGLRWGMILFIASEVLFFASFFWA FFNSSLAPTIELGMKWPPMGIQPFNPIQIPLLNTAILLASGVTITWAHHSIMECNHSQ ALQGLFFTVMLGFYFTLLQMYEYWEAPFTIADAVYGSTFFVATGFHGLHVIIGTTFLL TCLIRHMMNQFSSNHHFGFEAAAWYWHFVDVVWLFLYLSIYWWGS" tRNA 5507..5569 /anticodon=(pos:5537..5539,aa:Gly) /product="transfer RNA-Gly" CDS 5570..5917 /gene="ND3" /note="NCBI gi: 1182016" /codon_start=1 /transl_table=5 /db_xref="PID:g1182016" /translation="MMMLMTSITISFLLPMIVMLLATTLSKKSINDREKSSPFECGFD PKLNMPFSIQFFLIAVIFLIFDVEIALILPIVIIMKTSNIMVWTLSTMLFIIILLVGL YYEWNQGALKWAN" tRNA 5916..5980 /anticodon=(pos:5945..5947,aa:Ala) /product="transfer RNA-Ala" tRNA 5986..6050 /anticodon=(pos:6015..6017,aa:Arg) /product="transfer RNA-Arg" tRNA 6051..6115 /anticodon=(pos:6081..6083,aa:Asn) /product="transfer RNA-Asn" tRNA 6116..6182 /anticodon=(pos:6141..6143,aa:Ser) /product="transfer RNA-Ser" tRNA 6183..6249 /anticodon=(pos:6214..6216,aa:Glu) /product="transfer RNA-Glu" tRNA complement(6248..6314) /anticodon=(pos:6279..6281,aa:Phe) /product="transfer RNA-Phe" CDS complement(<6315..>8031) /gene="ND5" /translation="ICSLSFFFLFLFSTLFFILGIYYLMIDYSLFIEWELFSLNSSMV VMTFIIDWMSLVFMSFVMYISSLVIYYSNDYMHNEKNINRFIMIVLMFILSMAFLIIS PNLISILLGWDGLGLVSYCLVIYYQNVKSYNAGMLTALSNRIGDVAILISISWMLNFG SWNYIYYYYFISDSFEMKIITLLIILAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSS TLVTAGVYLLIRFNPMLMVYDFGWYILFIGCLTMFMSGLGANFEFDLKKIIALSTLSQ LGLMMSILSMGYSDLAFFHLLTHALFKALLFMCAGSMIHNLRDSQDIRFMGSIIHFMP LTSICFNVSSLCLCGMPFLAGFYSKDLILEIVCLSWVNFFIFFLYFFSTGLTASYSFR LFYYSMSGDNNYYSSYSFNDSSYFISFGMIGLLIVAVFGGSLLSWLIFPVPYLVVLPW YLKFLTLLTIILGSYFGYVISDFVYSYELFSLNFLSFVMFTGSMWFMPFLSTNYVSYL PLSFGYYSLKSFDSGWGELLGGQGLYSFFVYLINYIQSLYDSNFKVYLLTFVFWMFIL FVLFFL" tRNA complement(8047..8111) /anticodon=(pos:8077..8079,aa:His) /product="transfer RNA-His" CDS complement(8113..9447) /gene="ND4" /note="NCBI gi: 1182022" /codon_start=1 /transl_table=5 /db_xref="PID:g1182022" /translation="MLKYLFMIIFLIPICLLGNCWWLVHSLIFLLSFIFMISLYSYSD LSMISYYFGVDFYSFMLILLSLWICCLMITASSSIYSSSYHPNFFVFVVLLLLIMLFC SFSSLNLFSFYIFFESSLVPTLFLILGWGYQPERLQAGVYLMFYTLVASLPLLLVLFS INDLFNTLYYPLLIDFGSFYFLFYVFSIFAFLVKMPIFLFHLWLPKAHVEAPISGSMI LAGILLKLGGYGIFRMMKVISCLGLSFNYFVLSLSLFGGVIISFVCFRQVDLKSLIAY SSVAHMSLVICGLMTMNWWGCMGSLSLMIGHGISSSGLFCLSNIIYELLGSRSLLINK GMINLMPSMTIWWFLLSSSNMASPPSLNLLGEFSLLNSIISWSSYMILLLIFLSFFSA VYTLYMYSYSQHGLYYSGVYTCSLGYFREYHLLFLHWFPLNLLCLKGEYFYF" CDS complement(9441..9734) /gene="ND4L" /note="NCBI gi: 1182020" /codon_start=1 /transl_table=5 /db_xref="PID:g1182020" /translation="MSMFGLFTCLSIYFSGVYVFCSKRKHLLVVLLSLEYIVLSLFML IVLFLVEFDYDYFFPVIFLVFSVCEGALGLSILVSMIRSHGNDFFNSFFLSLC" tRNA 9737..9800 /anticodon=(pos:9767..9769,aa:Thr) /product="transfer RNA-Thr" tRNA complement(9801..9867) /anticodon=(pos:9835..9837,aa:Pro) /product="transfer RNA-Pro" CDS 9870..10391 /gene="ND6" /note="NCBI gi: 1182023" /codon_start=1 /transl_table=5 /db_xref="PID:g1182023" /translation="MMKMMIMSSSNLMNINFMKMNHPMSIMMTIIIQTLFISMMTGTM MESFWLSYILLLTFLGGMMVLFIYITSIASNEMFKIKINSIIIIVYMMIILSTLMYKL DKTISTEMIKNSEIMNLNYSINFKEMSTSLVKLYNNPTVIITIMMMIYLFITLLAVVK ITNINQGPMRKMS" CDS 10396..11535 /note="NCBI gi: 1182025" /codon_start=1 /transl_table=5 /product="Cytochrome B" /db_xref="PID:g1182025" /translation="MNKPLRIKHPMIKIINNSLNDLPAPTNISMWWNLGSLLGMCLMI QIVTGLFLTMHYTPNIEMAFSSVVHICRDVNNGWLIRTLHANGASMFFICMYLHVGRG IYYGSYMYMNTWMTGTIILFLVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTD IVQWVWGGFAVDNATLNRFYTFHFVLPFIVMAMVMIHLFFLHQTGSNNPIGLNSNIDK IPFHPYFTYKDMITFIILMMILIMLCLIDPYMLGDPDNFVPANPLVTPIHIQPEWYFL FAYAILRSIPNKLGGVIALVMSISILMIMPFYNKTKFRGNQFYPMNQIMFWIMVIVIC LLTWIGKRPVEEPYIMTGQILTIIYFSYFLFNVHIAKMWDTLIKT" tRNA 11535..11604 /anticodon=(pos:11565..11567,aa:Ser) /product="transfer RNA-Ser" CDS complement(11624..12565) /gene="ND1" /note="NCBI gi: 1182018" /codon_start=1 /transl_table=5 /db_xref="PID:g1182018" /translation="MMYDLFMFVLNFLLLIICVLISVAFLTLMERKVLGYIHIRKGPN KVGFLGIPQPFSDAIKLFCKEQPIPFMSNYFLYYFSPVFNLMLSLLIWVIFPYLTYMC SFPYGFYFLCCTSLSVYTFMIAGWSSNSNYALLGSLRSVAQTISYEVSLALILLSLII LIGSFNMLYFMNFQLYCWFIVFSFPLALSFFGSSLAETNRTPFDFAEGESELVSGFNI EYSTGGFTLIFLAEYSSIIFMSMLFSLIFLGGDFYSFYFFFKLSLVSFFFVWVRGTLP RFRYDKLMYLAWKSYLPLSLNFLFFFIGLSVMFFSII" tRNA complement(12569..12635) /anticodon=(pos:12606..12604,aa:Leu) /product="transfer RNA-Leu" rRNA complement(12636..13949) /note="large subunit rRNA" tRNA complement(13950..14020) /anticodon=(pos:13985..13987,aa:Val) /product="transfer RNA-Val" rRNA complement(14021..14847) /note="small subunit rRNA" repeat_region 14797..14951 /note="A+T rich region Rpt 1" D-loop 14848..15722 /note="A+T rich region" repeat_region 14952..15097 /note="A+T rich region Rpt 2" BASE COUNT 7002 a 2293 c 1586 g 4841 t ORIGIN BASE COUNT 251 a 76 c 123 g 377 t 4386 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 -----uauaa uuuguuuaga uuauuuuuua uuguaugugu uucguuuaua uucuaAAGUU 661 (UUA-)U-UC U|UGCUU-AU UUA-UUCACU -U-UUUC-UU |UA-UA--U- -UAU-A-UAU 721 -AAG------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|u uuu----guu agacu----- -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- |--------- ---------- 1321 ---------- -----(---- ---------- ---------- ---------- ------)--- 1381 -----|---- ---------- -|-------- --|------- (------)-- --aaauguuc 1441 uauuuauuu- ---------- ---------- ---------- ---------- ---------- 1501 AUA|GUA-AU UAAAUUUAAU --UAUCAAG( ---------- ----UUAU)U UUGGA-AUU| 1561 A|-GUA--AU UG-AUG-aa- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GUAUU|-GGC 1921 -AUA-U---U UCGU-G(-CC AGCAGCC-GC -GGU-UA)-U ACGAUU|--- -AAU-ACA-- 1981 AGUGA-AUAU U--------- uuuGGU|ug- --auguaguu ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --------au aaauuauuuu gaguuu--ua -----|au-a auuaau--ua ----uUAG(G 2341 UGAAA)UUU- --------ua -uuu-uau-- u--------- --------au --ug(-cucu 2401 -)ua|auu-- ----ugac-- ---------- ---------- --------cu au-aa-aAUU 2461 A-UAA---AA UAGACUAGG( AUUAGAUAC) CCUA-UUAU| --UUA-AAU- ---------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(g-ua)a auuuu----- 2701 g-u|uuu|AC C-UGGG-UAU UAUUAGU(-- -uaag-g)UC UUU--AAACC CAAAGAAU-U 2761 UG|GCGGUA- UUUCAU--UC CAUUCAGA|G GAACCUAU-C |UCAUG--AU UG(AUAGUAC 2821 A--------- ----)CGAUU U-ACUUUACU UAAUUUAUU- ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------UGU UUG-UA|UA- 3121 |UC|-UC--C |G------UU AU-CA|G-AA AAU-|CUU(U --UUG)GAG- -----(-aa- 3181 a--)------ A-AAUUUUCU UGU-UUUUU- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uauu- 3781 -------a-a aauuuA-UUU C-AGGUCAAG G|UGCA|GCU UAU------- ---------A 3841 G-U-UA-AG- -U-GUA-UGA -UGGGUUACA AU--aa---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(uuu uuu--)---- ---------- ---------- ----uuuau- 4021 ---------- -----UAUGG --AUUUA-AU U-U(------ ---------- ---------- 4081 ---------- ---------- UGUAAU---) A-UU-U--UA -A--UGAAG- -GUGGAUUUG 4141 A-U--AGUAA U-UUAAAU(- -UAUU-UA-- --)AUUUAAC U-GAU----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AUU--GGCU 4261 CUGAAG-UG- UGUACACA-U -CGCCCGUCA C-UCU--CGU U--------- ---------- 4321 ---------- ---------- -auugauua- a---a----- -(auuuua)- ---ua---uc 4381 -uuuu-aa-- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- UAUG-AGA-U AAGUCGUAAC AUAGUAGA-U GUA-CU(GGA 4621 -A)AGU-GU- AUCUAGUAAG UUUAUU---| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.cassi 5213 bp RNA RNA 08-JAN-1997 DEFINITION Mitochondrion Magicicada cassini.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION X97149 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Magicicada cassini. ORGANISM Mitochondrion Magicicada cassini. REFERENCE 1 (bases 1 to 609) AUTHORS Grapputo,A., Franke,A. and McIntosh,C. Simon,C.M., Nigro,L., Sullivan,J., Holsinger,K., Martin,A., TITLE rate and of 12S ribosomal RNA genes Large differences in substitutional pattern and evolutionary JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 609) AUTHORS Simon,C.M. TITLE Direct Submission JOURNAL Submitted (04-APR-1996) C.M. Simon, Department of Ecology and Evolutionary Biology, U-43, University of Connecticut, Storrs, CT 06268, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X97149 BASE COUNT 236 a 51 c 81 g 241 t 4604 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~A-UA--U- -UAC-A-UGC 721 -AUA------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|a cuu----uaa a(uuga--)- -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- --------uu gaaaauu|au cugaauga-- (uaa)--aua 1141 uucagagc-- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- |--------- ---------- 1321 ---------- -----(---- ---------- ---------- ---------- ------)--- 1381 -----|---- ---------- -|-------- --|------- (------)-- ---------- 1441 ---------- ---------- ---------- -|-------( -----)---- ---------- 1501 GCA|GUA-UU UAAUAUUAUU --AAUUAUU( ---------- -----aau)U UUAGA-AGU| 1561 A|-AUA--AA UU-UAUuua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- UAGAG|-GAC 1921 -AAA-A---U UCGU-G(-CC AGCAGUU-GC --GU-UA)-C ACGAUU|--- -CUC-UAA-- 1981 AUUUA-GUUA U--------- auuAGU|uu- -caguuaaaa ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ----auaaau uaauaa--u- -----|AAGU UUUUUA-AAU ----UUUG(G 2341 UGGAA)UAA- -------ugu auaa-auaug u--------- -------auu --ua(-cuuu 2401 -)ua|ugu-- ---------- ---------- ---------- --------cu gagaa-aCUU 2461 U-UGU--uua AAAACUAGG( AUUAGAUAC) CCUA-UUAU| --UAA-AAG- ug-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaau)a a--------- 2701 a-a|-ua|AC U-AGAU-UAU UAAUAGU(-- -uaug-a)UC UUU--AAAUU CAAAGAAU-U 2761 UG|GCGGUA- AUUUA---UC UAAUCAGA|G GAAUCUGU-U |UUGUA--AU CG(AUAGCCC 2821 A--------- ----)CGAUA G-AUUUCACU UUAUAUA--- ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------UAU UUG-UA|UA- 3121 |CC|-uC--U |G------UC A---a|G-AA UGU-|UUU(A --UCA)GAA- -----(---- 3181 ---)------ u-aAUUUUCa uu--aauu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuau- 3781 -------U-A AUAAAA-UGU C-AGGUCAAG G|UGCA|GUU AAU------- ---------U 3841 U-U-AA-AG- -A-AAG--AA -UGGAUUACA UU-auu---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au a----)---- ---------- ---------- ----aaa--- 4021 ---------- ------AUGG --AUUAU-UU U-C(------ ---------- ---------- 4081 ---------- ---------- uauaau---) G-AA-A--AU CA--UGAAA- -UUGGAUUUG 4141 A-A--AGUAA A-AUU-au(- uaaau-au-- --)aauuu~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -(~~~~~~)~ ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.sep.1 5213 bp RNA RNA 08-JAN-1997 DEFINITION Mitochondrion Magicicada septendecim.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION X97147 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Magicicada septendecim. ORGANISM Mitochondrion Magicicada septendecim. REFERENCE 1 (bases 1 to 613) AUTHORS Grapputo,A., Franke,A. and McIntosh,C. Simon,C.M., Nigro,L., Sullivan,J., Holsinger,K., Martin,A., TITLE rate and of 12S ribosomal RNA genes Large differences in substitutional pattern and evolutionary JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 613) AUTHORS Simon,C.M. TITLE Direct Submission JOURNAL Submitted (04-APR-1996) C.M. Simon, Department of Ecology and Evolutionary Biology, U-43, University of Connecticut, Storrs, CT 06268, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X97147 BASE COUNT 229 a 50 c 90 g 244 t 4600 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~A-UA--U- -UAC-A-UGC 721 -AUA------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|a cuu----uaa a(uugg--)- -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- --------uu gaaaauu|au cugaauga-- (uaa)--uua 1141 uccagagc-- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- |--------- ---------- 1321 ---------- -----(---- ---------- ---------- ---------- ------)--- 1381 -----|---- ---------- -|-------- --|------- (------)-- ---------- 1441 ---------- ---------- ---------- -|-------( -----)---- ---------- 1501 GCA|GUA-UU AAGUAUUAUU --AAUUAUU( ---------- -----aau)U UUAGA-GGU| 1561 A|-AUA--AA UU-UAUuua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- UAGAG|-GAC 1921 -AAA-A---U UCGU-G(-CC AGCAGUU-GC --GU-UA)-U ACGAUU|--- -UUC-UAA-- 1981 AUUUA-ACUA U--------- guuAGU|uu- -caguuaaaa ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ---agugugu ugauau--uc -----|AAUU UUUUUA-AAU ----UUUG(G 2341 UGGAA)UAA- -------aau auaa-auaug u--------- -------guu --ua(-auuu 2401 -)ua|ugu-- ---------- ---------- ---------- --------cu gagaa-aCUU 2461 U-UAU--aua AAAACUAGG( AUUAGAUAC) CCUA-UUAU| --UGA-GAG- ug-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaau)a a--------- 2701 a-a|-ua|AC U-AGAU-UAU UAAUAGU(-- -uaug-a)UC UUU--AAAUU CAAAGAAU-U 2761 UG|GCGGUA- AUUUA---UC UAAUCAGA|G GAAUCUGU-U |UUGUA--AU UG(AUAAUCC 2821 A--------- ----)CGAUA G-AUUCUAUU UUAAAUA--- ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------AAU UUG-UA|UA- 3121 |CC|-uC--U |G------UC A---a|G-AA UGU-|UUU(A --UCA)GAA- -----(---- 3181 ---)------ u-aAUUUUCa uu--uguu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuau- 3781 -------U-A AUAAAA-UGU C-AGGUCAAG G|UGCA|GUU AAU------- ---------U 3841 U-U-AA-AG- -A-AAA--AA -UGGAUUACA UU-auu---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-gu aa---)---- ---------- ---------- ----aaa--- 4021 ---------- ------AUGA --AUUGU-UU U-C(------ ---------- ---------- 4081 ---------- ---------- uauaau---) G-AA-A--AU CA--UGAAA- -CUGGAUUUG 4141 A-A--AGUAA A-UUUCAU(- uaaau-au-- --)GUGUU~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -(~~~~~~)~ ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.sep.2 5213 bp RNA RNA 08-JAN-1997 DEFINITION Mitochondrion Magicicada septendecula.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION X97151 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Magicicada septendecula. ORGANISM Mitochondrion Magicicada septendecula. REFERENCE 1 (bases 1 to 341) AUTHORS Grapputo,A., Franke,A. and McIntosh,C. Simon,C.M., Nigro,L., Sullivan,J., Holsinger,K., Martin,A., TITLE rate and of 12S ribosomal RNA genes Large differences in substitutional pattern and evolutionary JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 341) AUTHORS Simon,C.M. TITLE Direct Submission JOURNAL Submitted (04-APR-1996) C.M. Simon, Department of Ecology and Evolutionary Biology, U-43, University of Connecticut, Storrs, CT 06268, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X97151 BASE COUNT 134 a 33 c 47 g 127 t 4872 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ ---~~~~~~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|--~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~|~~~-~~ ~~~~~~~~~~ --~~~~~~~( ---------- ----~~~~)~ ~~~~~-~~~| 1561 ~|-~~~--~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~---~ ~~~~-~(-~~ ~~~~~~~~~~ ~~~~~~~)-~ ~~~~~~|--- -~~~-~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 2461 ~-~~~--~~~ ~AAACUAGG( AUUAGAUAC) CCUA-UUAU| --UGA-AAG- ug-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaau)a a--------- 2701 a-a|-ca|AC U-AGAU-UAU UAAUAGU(-- -uaug-a)UC UUU--AAAUU CAAAGAAU-U 2761 UG|GCGGUA- AUUUA---UC UAAUCAGA|G GAAUCUGU-U |UUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA G-AUUUCACU UUAUAUA--- ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------AGU UUG-UA|UA- 3121 |CC|-uC--U |G------uc a---a|G-AA UGC-|UUU(A --UCA)GAA- -----(---- 3181 ---)------ u-aAUUUUCa uu--aauu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuau- 3781 -------U-A AUAAAA-UGU C-AGGUCAAG G|UGCA|GCU AAU------- ---------U 3841 U-U-AA-AG- -A-AAG--AA -UGGAUUACA UU-auu---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au a----)---- ---------- ---------- ----aaa--- 4021 ---------- ------AUGA --AUUGU-UU U-C(------ ---------- ---------- 4081 ---------- ---------- uauaau---) G-AA-A--AU CA--UGAAA- -UUGGAUUUG 4141 A-A--AGUAA A-UUU-au(- uaaau-au-- --)aguuu~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -(~~~~~~)~ ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.tre.1 5213 bp RNA RNA 08-JAN-1997 DEFINITION Mitochondrion Magicicada tredecim.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION X97146 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Magicicada tredecim. ORGANISM Mitochondrion Magicicada tredecim. REFERENCE 1 (bases 1 to 613) AUTHORS Simon,C.M., Nigro,L., Sullivan,J., Holsinger,K., Martin,A., Grapputo,A., Franke,A. and McIntosh,C. TITLE Large differences in substitutional pattern and evolutionary rate and of 12S ribosomal RNA genes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 613) AUTHORS Simon,C.M. TITLE Direct Submission JOURNAL Submitted (04-APR-1996) C.M. Simon, Department of Ecology and Evolutionary Biology, U-43, University of Connecticut, Storrs, CT 06268, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X97146 BASE COUNT 229 a 50 c 90 g 244 t 4600 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~A-UA--U- -UAC-A-UGC 721 -AUA------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|a cuu----uaa a(uugg--)- -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- --------uu gaaaauu|au cugaauga-- (uaa)--uua 1141 uccagagc-- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- |--------- ---------- 1321 ---------- -----(---- ---------- ---------- ---------- ------)--- 1381 -----|---- ---------- -|-------- --|------- (------)-- ---------- 1441 ---------- ---------- ---------- -|-------( -----)---- ---------- 1501 GCA|GUA-UU AAGUAUUAUU --AAUUAUU( ---------- -----aau)U UUAGA-GGU| 1561 A|-AUA--AA UU-UAUuua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- UAGAG|-GAC 1921 -AAA-A---U UCGU-G(-CC AGCAGUU-GC --GU-UA)-U ACGAUU|--- -UUC-UAA-- 1981 AUUUA-ACUA U--------- guuAGU|uu- -caguuaaaa ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ---agugugu ugauau--uc -----|AAUU UUUUUA-AAU ----UUUG(G 2341 UGGAA)UAA- -------aau auaa-auaug u--------- -------guu --ua(-auuu 2401 -)ua|ugu-- ---------- ---------- ---------- --------cu gagaa-aCUU 2461 U-UAU--aua AAAACUAGG( AUUAGAUAC) CCUA-UUAU| --UGA-GAG- ug-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaau)a a--------- 2701 a-a|-ua|AC U-AGAU-UAU UAAUAGU(-- -uaug-a)UC UUU--AAAUU CAAAGAAU-U 2761 UG|GCGGUA- AUUUA---UC UAAUCAGA|G GAAUCUGU-U |UUGUA--AU UG(AUAAUCC 2821 A--------- ----)CGAUA G-AUUCUAUU UUAAAUA--- ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------AAU UUG-UA|UA- 3121 |CC|-uC--U |G------UC A---a|G-AA UGU-|UUU(A --UCA)GAA- -----(---- 3181 ---)------ u-aAUUUUCa uu--uguu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuau- 3781 -------U-A AUAAAA-UGU C-AGGUCAAG G|UGCA|GUU AAU------- ---------U 3841 U-U-AA-AG- -A-AAA--AA -UGGAUUACA UU-auu---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-gu aa---)---- ---------- ---------- ----aaa--- 4021 ---------- ------AUGA --AUUGU-UU U-C(------ ---------- ---------- 4081 ---------- ---------- uauaau---) G-AA-A--AU CA--UGAAA- -CUGGAUUUG 4141 A-A--AGUAA A-UUUCAU(- uaaau-au-- --)GUGUU~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -(~~~~~~)~ ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.tre.2 5213 bp RNA RNA 08-JAN-1997 DEFINITION Mitochondrion Magicicada tredecassini.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION X97148 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Magicicada tredecassini. ORGANISM Mitochondrion Magicicada tredecassini. REFERENCE 1 (bases 1 to 609) AUTHORS Simon,C.M., Nigro,L., Sullivan,J., Holsinger,K., Martin,A., Grapputo,A., Franke,A. and McIntosh,C. TITLE Large differences in substitutional pattern and evolutionary rate and of 12S ribosomal RNA genes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 609) AUTHORS Simon,C.M. TITLE Direct Submission JOURNAL Submitted (04-APR-1996) C.M. Simon, Department of Ecology and Evolutionary Biology, U-43, University of Connecticut, Storrs, CT 06268, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X97148 BASE COUNT 236 a 50 c 82 g 241 t 4604 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~A-UA--U- -UAC-A-UGC 721 -AUA------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|a cuu----uaa a(uuga--)- -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- --------uu gaaaauu|au cugaauga-- (uaa)--gua 1141 uucagagc-- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- |--------- ---------- 1321 ---------- -----(---- ---------- ---------- ---------- ------)--- 1381 -----|---- ---------- -|-------- --|------- (------)-- ---------- 1441 ---------- ---------- ---------- -|-------( -----)---- ---------- 1501 GCA|GUA-UU AAGUAUUAUU --AAUUAUU( ---------- -----aau)U UUAGA-AGU| 1561 A|-AUA--AA UU-UAUuua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- UAGAG|-GAC 1921 -AAA-A---U UCGU-G(-CC AGCAGUU-GC --GU-UA)-C ACGAUU|--- -CUC-UAA-- 1981 AUUUA-GUUA U--------- auuAGU|uu- -caguuaaaa ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ---a-uaaau uaauaa--u- -----|AAGU UUUUUA-AAU ----UUUG(G 2341 UGGAA)UAA- -------ugu auaa-auaug u--------- -------auu --ua(-uuuu 2401 -)ua|ugu-- ---------- ---------- ---------- --------cu gagaa-aCUU 2461 U-UGU--uua AAAACUAGG( AUUAGAUAC) CCUA-UUAU| --UAA-AAG- ug-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaau)a a--------- 2701 a-a|-ua|AC U-AGAU-UAU UAAUAGU(-- -uaug-a)UC UUU--AAAUU CAAAGAAU-U 2761 UG|GCGGUA- AUUUA---UC UAAUCAGA|G GAAUCUGU-U |UUGUA--AU CG(AUAGCCC 2821 A--------- ----)CGAUA G-AUUUCACU UUAUAUA--- ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------UAU UUG-UA|UA- 3121 |CC|-uC--U |G------UC A---a|G-AA UGU-|UUU(A --UCA)GAA- -----(---- 3181 ---)------ u-aAUUUUCa uu--aauu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuau- 3781 -------U-A AUAAAA-UGU C-AGGUCAAG G|UGCA|GUU AAU------- ---------U 3841 U-U-AA-AG- -A-AAG--AA -UGGAUUACA UU-auu---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au a----)---- ---------- ---------- ----aaa--- 4021 ---------- ------AUGA --AUUAU-UU U-C(------ ---------- ---------- 4081 ---------- ---------- uauaau---) G-AA-A--AU CA--UGAAA- -UUGGAUUUG 4141 A-A--AGUAA A-AUUauu(- aaau--au-- --)aauuu~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -(~~~~~~)~ ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.tre.3 5213 bp RNA RNA 08-JAN-1997 DEFINITION Mitochondrion Magicicada tredecula.; 12S ribosomal RNA; 12S rRNA gene. ACCESSION X97150 KEYWORDS 12S ribosomal RNA; 12S rRNA gene. SOURCE Mitochondrion Magicicada tredecula. ORGANISM Mitochondrion Magicicada tredecula. REFERENCE 1 (bases 1 to 610) AUTHORS Grapputo,A., Franke,A. and McIntosh,C. Simon,C.M., Nigro,L., Sullivan,J., Holsinger,K., Martin,A., TITLE rate and of 12S ribosomal RNA genes Large differences in substitutional pattern and evolutionary JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 610) AUTHORS Simon,C.M. TITLE Direct Submission JOURNAL Submitted (04-APR-1996) C.M. Simon, Department of Ecology and Evolutionary Biology, U-43, University of Connecticut, Storrs, CT 06268, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X97150 BASE COUNT 237 a 54 c 83 g 236 t 4603 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- --~~~~~~~~ 661 (~~~~)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~A-UA--U- -UAC-A-UGC 721 -AUA------ -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|a cuu----uaa a(uuga--)- -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- --------uu gaaaauu|au cugaauga-- (uaa)--gua 1141 uucagagc-- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- |--------- ---------- 1321 ---------- -----(---- ---------- ---------- ---------- ------)--- 1381 -----|---- ---------- -|-------- --|------- (------)-- ---------- 1441 ---------- ---------- ---------- -|-------( -----)---- ---------- 1501 GCA|GUA-UU AAGUAUUAUU --AAUUAUU( ---------- -----aau)U UUAGA-AGU| 1561 A|-AUA--AA UU-UAUuua- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- UAGAG|-GAC 1921 -AAA-A---U UCGU-G(-CC AGCAGUU-GC --GU-UA)-C ACGAUU|--- -CUC-UAA-- 1981 AUUUA-GUUA U--------- auuAGU|uu- -caguuaaaa ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ---aauaaau uaauag--u- -----|AAGA UUUUUA-AAU ----UUUG(G 2341 UGAAA)UAA- -------ugu auaa-auaug u--------- -------guu --ua(-cuuu 2401 -)ua|ugu-- ---------- ---------- ---------- --------cu gauaa-aCUU 2461 U-UAU--caa AAAACUAGG( AUUAGAUAC) CCUA-UUAU| --UGA-AAG- ug-------- 2521 ---------- |--------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(aaau)a a--------- 2701 a-a|-ua|AC U-AGAU-UAU UAAUAGU(-- -uaug-a)UC UUU--AAAUU CAAAGAAU-U 2761 UG|GCGGUA- AUUUA---UC UAAUCAGA|G GAAUCUGU-U |UUAUA--AU CG(AUAACCC 2821 A--------- ----)CGAUA G-AUUUCACU UUAUAUA--- ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------AGU UUG-UA|UA- 3121 |CC|-uC--U |G------UC A---a|G-AA UGC-|UUU(A --UCA)GAA- -----(---- 3181 ---)------ u-aAUUUUCa uu--aauu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uuau- 3781 -------U-A AUAAAA-UGU C-AGGUCAAG G|UGCA|GCU AAU------- ---------U 3841 U-U-AA-AG- -A-AAG--AA -UGGAUUACA UU-auu---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au a----)---- ---------- ---------- ----aaa--- 4021 ---------- ------AUGA --AUUGU-UU U-C(------ ---------- ---------- 4081 ---------- ---------- uauaau---) G-AA-A--AU CA--UGAAA- -UUGGAUUUG 4141 A-A--AGUAA A-UUUauu(- aaau--au-- --)aguuu~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -(~~~~~~)~ ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (9)-Mollus 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.L.pupur 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Lithophaga pupurea. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Lithophaga pupurea. ORGANISM Mitochondrion Lithophaga pupurea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X75529 ID MILPC1RR standard; DNA; ORG; 422 BP. XX AC X75529; XX DT 22-NOV-1993 (Rel. 37, Created) DT 08-NOV-1994 (Rel. 41, Last updated, Version 4) XX DE L.pupurea (C)1 mitocondrial DNA for small subunit (12S) mt rRNA XX KW 12S ribosomal RNA; mitochondrial ribosomal rna. XX OS Lithophaga pupurea OC Eukaryota; Animalia; Eumetazoa; Mollusca; Bivalvia; OC Isofilibranchia; Mytiloida; Mytilaceae; Mytilidae; Lithophaginae. XX OG Mitochondrion XX RN [1] RA Mokady O., Rozenblatt S., Graur D., Loya Y.; RT "Coral-host specificity of Red Sea Lithophaga bivalves: RT interspecific and intraspecific variation in 12S mitochondrial RT ribosomal RNA."; RL Mol. Marine Biol. Biotechnol. 3:158-164(1994). XX RN [2] RP 1-422 RA Mokady O.; RT ; RL Submitted (03-NOV-1993) to the EMBL/GenBank/DDBJ databases. RL O. Mokady, Dept. of Zoology, The G. S. Wise Fac. of Life Sciences, RL Tel Aviv Univ., Tel Aviv 69978, ISRAEL XX FH Key Location/Qualifiers FH FT source 1..422 FT /organism="Lithophaga pupurea" FT /sub_species="C1, (from the coral Cyphastrea chalcidicum)" FT /isolate="LpurC21" FT /dev_stage="adult bivalve" FT /tissue_type="whole body" FT /mitochondrion FT rRNA <1..>422 FT /product="small subunit (12S) mitochondrial ribosomal RNA" XX SQ Sequence 422 BP; 130 A; 66 C; 95 G; 128 T; 3 other; BASE COUNT 130 a 66 c 95 g 128 t 4794 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ----~~~~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -~~~~)~~~~ 1261 ~~~~~~~~~- ---------- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---------- ---------- ------~--- 1381 ---~~~---~ ~~~~~--~~~ ~~~~~~~-~~ --~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ 1441 ~~~~------ ---------- ---------- -~-~~~~--~ ~~~~-~~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~~-~~~~ 2401 -~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~~~-~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ guuauccacg gcncaaauua 2701 g-gu-uu|ac c-aGGU-GAC UACAAGU(-- -UUGU--)UC NUA--AAAGU UAAAggau-C 2761 UG|GCGGACU UACACGA-aa cguACAGG|G GAAUCUGG-G |UGUUA--AA GG(ACGAUCC 2821 G--------- ----)CCUAC A-UUUGCuCC UUGUUUUAGC ---------- ---------- 2881 --------ug ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---c---UGC ACA-UG|UA- 3121 |UG|-GC--C |G------uu uu-ca-a-cu auu--guu-c g-uaa-gac- ------aug- 3181 ugugca---- --gagggcuu aaac-aau-g acu------- ---------- -----(---- 3241 --)<-uaagg guagguguuu uuauucgcuu aacuuuaaug uuauug---- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----uuauag 3781 ---------c cacgaa-aug C-AGGUUGUC A|UUUG|GCU ACU------- ---------A 3841 A-C-AA-GG- c--UAG--CC -UGGAUUACA GU--ugaaaa ug-------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- -----)---- ---------- ---------- -ag-caa--- 4021 ---------- -----auCGG --AUuua-uc a-a(------ ---------- ---------- 4081 ---------- -------uua AGAAAu--u) u-aa-u--ac -a--UGAAG- -GCGGACUUG 4141 U-A--AGUAA A-AUUGGU(- aaaua-au-- --)ACCAAUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -------cGA 4261 AGUGUA-GU- AGNACAAA~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -(~~~~~~)< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.L.simpl 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Lithophaga simplex. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Lithophaga simplex. ORGANISM Mitochondrion Lithophaga simplex. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X75528 ID MILSGRR standard; DNA; ORG; 418 BP. XX AC X75528; XX DT 22-NOV-1993 (Rel. 37, Created) DT 08-NOV-1994 (Rel. 41, Last updated, Version 5) XX DE L.simplex (G) mitocondrial DNA for small subunit (12S) mt rRNA XX KW 12S ribosomal RNA; mitochondrial ribosomal rna. XX OS Lithophaga simplex OC Eukaryota; Animalia; Eumetazoa; Mollusca; Bivalvia; OC Isofilibranchia; Mytiloida; Mytilaceae; Mytilidae; Lithophaginae. XX OG Mitochondrion XX RN [1] RA Mokady O., Rozenblatt S., Graur D., Loya Y.; RT "Coral-host specificity of Red Sea Lithophaga bivalves: RT interspecific and intraspecific variation in 12S mitochondrial RT ribosomal RNA."; RL Mol. Marine Biol. Biotechnol. 3:158-164(1994). XX RN [2] RP 1-418 RA Mokady O.; RT ; RL Submitted (03-NOV-1993) to the EMBL/GenBank/DDBJ databases. RL O. Mokady, Dept. of Zoology, The G. S. Wise Fac. of Life Sciences, RL Tel Aviv Univ., Tel Aviv 69978, ISRAEL XX FH Key Location/Qualifiers FH FT source 1..418 FT /organism="Lithophaga simplex" FT /sub_species="G (from the coral Goniastrea pectinata)" FT /isolate="LsimG11" FT /dev_stage="adult bivalve" FT /tissue_type="whole body" FT /mitochondrion FT rRNA <1..>418 FT /product="small subunit (12S) mitochondrial ribosomal RNA" XX SQ Sequence 418 BP; 133 A; 63 C; 91 G; 130 T; 1 other; BASE COUNT 133 a 63 c 91 g 130 t 4796 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ----~~~~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~-~~~~~~ -~-~~~~-~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~---~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -~~~~)~~~~ 1261 ~~~~~~~~~- ---------- ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---------- ---------- ------~--- 1381 ---~~~---~ ~~~~~--~~~ ~~~~~~~-~~ --~~~~~~~~ ~-~~~--~~~ ~~~~~~~~~~ 1441 ~~~~------ ---------- ---------- -~-~~~~--~ ~~~~-~~~~~ ~~~~~~~~~~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ---------- ---~~~~~)- ----~-~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|-~~~ 1921 -~~~-~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~-~~)-~ ~~~~~~|--- -~~~~~~~-- 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~-- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -~~~~~~~~~ -~~~~~~~~~ ~~~~~~--~~ -----|~~~~ ~~~~~~-~~~ ----~~~~(~ 2341 ~~~~~)~~~- ~~~------~ ~~~~~~~~~~ ~~~------- -----~~~~~ -~~~~-~~~~ 2401 -~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~-~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~-~~~~~-~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~-~~ |~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~uuauccaca guucnaaaua 2701 g-ga-uu|ac c-aGGU-CAC UACAAGU(-- -UCGU--)UC UUA--AAAGC CAAAAGUU-U 2761 UG|GCGGACU UACACGA-aa cguACAGG|G GAAUCUGG-G |UaUUA--AA GG(AuGGUCC 2821 A--------- ----)CCUAC A-UUUGUuCC UUGUUUUAGC ---------- ---------- 2881 --------uu ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---c---UGC GCA-UG|UA- 3121 |UG|-GC--C |G------uu gu-aa---cu aau--guu-u --aau-agc- ------aug- 3181 cguacg---- --aug----- -----ggucg au-------- ---------- -----(---- 3241 --)--- ---|------ ---------- ---------- (------)-- ----uuauga 3781 ---------c caagua-auu C-AGGUUGUC A|UUUG|GCU AUU------- ---------A 3841 A-C-AA-GG- c--gAG--UC -UGGAUUACA GU--ugaagu ug-------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- -----)---- ---------- ---------- -ag-cau--- 4021 ---------- -----auCGG --AUuua-uu u-a(------ ---------- ---------- 4081 ---------- ---------- GGAAAc--u) u-uu-u--ac -a--UGAAG- -GAGGACUUG 4141 U-A--AGUAA A-AUUGUA(- aaaua-au-- --)GGCAAUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -------uGA 4261 AGUGUA-GU- AGUA~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -(~~~~~~)< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.eduli 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Mytilus edulis. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Mytilus edulis. ORGANISM Mitochondrion Mytilus edulis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M83756 DEFINITION Mytilus edulis mitochondrial NADH dehydrogenase subunit 5 (ND5) gene, 3' end; NADH dehydrogenase subunit 6 (ND6) gene, complete cds; and cytochrome b (cyt b), 5' end. SOURCE Mitochondrion Mytilus edulis (chromosome Mitochondrion Mytilus edulis) adult DNA. ORGANISM Mitochondrion Mytilus edulis Eukaryota; Animalia; Eumetazoa; Mollusca; Bivalvia; Isofilibranchia; Mytiloida; Mytilaceae; Mytilidae. REFERENCE 1 (bases 1 to 5314) AUTHORS Brown,W.M., Boore,J.L. and Hoffmann,R.J. TITLE A novel mitochondrial genome organization for the blue mussel, Mytilus edulis JOURNAL Genetics 131, 397-412 (1992) FEATURES Location/Qualifiers CDS <1..245 /product="NADH dehydrogenase subunit 5" /gene="ND5" /note="putative" /codon_start=1 /translation="EDVVYRKFNFSSWEGVFFKGSRTVAQSLDQGWLELLGPQGVHAG LGQFSCLNEIVQKNYFTYQLVVWGLLVAGGVSLIIFM" /citation=[1] CDS 246..722 /product="NADH dehydrogenase subunit 6" /gene="ND6" /note="putative" /codon_start=1 /translation="MRVMIMCVSLMSVFSIVLIAKQPISLGLVFIEGSMIACVEIALE VRSLLGFLLFLTYVRGVMVLFLYVLSIYPNEVYRFNLEFVMIVRRCCAMMGLVGLMNY EYVEISGSIIFKVYGWRKGVKPMYPNSRRFAVCDVSGVVFVYKNHSAFAKSKMRSR" /citation=[1] tRNA 725..792 /anticodon=(pos:755..757,aa:Phe) /product="tRNA-Phe" /note="putative" /citation=[1] rRNA 793..1737 /note="Location of 5' and 3' ends imprecisely known. Nucleotides 997-1539 not determined from both DNA strands." /product="small subunit rRNA" /note="putative" /citation=[1] tRNA 1738..1803 /anticodon=(pos:1769..1771,aa:Gly) /product="tRNA-Gly" /note="putative" /citation=[1] tRNA 1804..1868 /anticodon=(pos:1835..1837,aa:Asn) /product="tRNA-Asn" /note="putative" /citation=[1] tRNA 1869..1933 /anticodon=(pos:1899..1901,aa:Glu) /product="tRNA-Glu" /note="putative" /citation=[1] tRNA 1935..2002 /anticodon=(pos:1969..1971,aa:Cys) /product="tRNA-Cys" /note="putative" /citation=[1] tRNA 2003..2069 /anticodon=(pos:2034..2036,aa:Ile) /product="tRNA-Ile" /note="putative" /citation=[1] tRNA 2085..2151 /anticodon=(pos:2114..2116,aa:Gln) /product="tRNA-Gln" /note="putative" /citation=[1] tRNA 2157..2221 /anticodon=(pos:2187..2189,aa:Asp) /product="tRNA-Asp" /note="putative" /citation=[1] rRNA 2222..3465 /note="Locations of 5' and 3' ends imprecisely known. Nucleotides 2222-3293 not determined from both DNA strands." /product="large subunit rRNA" /note="putative" /citation=[1] misc_feature 3466..4623 /function="unknown" /note="May contain replication origin. No known coding function." /note="putative" /citation=[1] tRNA 4624..4690 /anticodon=(pos:4655..4657,aa:Tyr) /product="tRNA-Tyr" /note="putative" /citation=[1] /partial CDS 4692..>5314 /gene="cyt b" /note="putative" /codon_start=1 /translation="MVGNNTAYNTNAPKRVGPWRSTNKLVKIMNDRFYDLPCPVNLNA WWRFGSMLGLCLVIQLLRGLLLSAHYTAHEDMAFDSVVHIMRNVEKGWMLRNIHANGS SMFFICIYAHIARGLYYGSYLDKTVWYFGVHLFLLTMAEAFLGYTLPWGQMSYWGATV ITNMLRVRPVVGERMLRYVWGGXTVCNATLKRFYTLHFLLPFCNSGG" BASE COUNT 309 a 125 c 214 g 297 t 4268 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ----agucug uaggaGGGUU 661 (UGA-)U-UA U|GGCCU--U AAA-UUUAUA -g-acaa-aa |ug-cu--u- -CuC-A-UGA 721 -uuc------ -----|---- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- ua------aa u--------- -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- -------gc- 1441 gagc---uug aa(---ca-g a--)uua--- -|-agga--( -uaag)--uu caa----c-a 1501 UCA|GUG-gg gAAAAUUGGU U-AAUAAAG( ---------- ----gaa-)C UUUAA-CCC| 1561 A|-Gcu--u- uu-ug----a uaau------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- UUCGG|-GGU 1921 -UAA-UugaU GAAU-G(-CC AGCAGCC-GC -GGU-UA)-G AUUCAG|--- -UUC-GAA-- 1981 UAUAA-AUUU A--------- agCGGA|uu- --g-guuaga -gucaauguu ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------g--- ------gguc uauaaa--ac -----|uaua aaaaaa-cua uagguGCA(G 2341 UGUAA)UGUU AA------cg guuu-uuu-g ugg------- ------uuau -auu(-ccu- 2401 -)ga|a---- ----guuuua ---------g ug-------- agu--uucua acGAA-UCUA 2461 U-GAA---GU GAAACCAGG( AUUAGAUAC) CCUG-UUAU| --CCA-UAG- uuuaaa-a-- 2521 ---------- |--|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --c(agaa)g ---------- 2701 ---|--u|UC C-UCUU-AAC UAAACAU(-- -UUGG--)UU GUC--AAAGA GAAAUAAA-U 2761 AG|GCGGUG- UCUGAGAuag aAAACAGG|G GAUCCUGG-G |UGUUA--AA GG(AUAACCC 2821 A--------- ----)CCUAC A-UUUGAGCC UUGUCUUAUU ---------- ---------- 2881 (-------ag u--)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---g---CGU GUG-UA|UGg 3121 |uu|-GU--U |-------ua cu-cu|a-au aug-|gug(a --gug)ucc- ------ggg- 3181 uaaa------ ---aauuuug guu-auugcu aaaguuaggg uuuauuuuau ugg--(uuaa 3241 gu)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 uugguaaaau aaguuagcuu u--------- -----agcua gaugcagcua guagaagggg 3721 uuuauu>--- ---|------ ---------- ---------- (------)-- caccuuugua 3781 gcacagcuuc aaaaauaauu c-AGAUUGAC A|UGCA|GCU UAU------- ---------G 3841 A-U-AA-GG- u--UAA--UC -UGGGAUACA GU--ug---- ---------- ---------- 3901 ----<----- -----cagcu uaag-caaua guuuaaauuu aaacuauuaa guaguauaaa 3961 u--------- ----->(--- -----)---- ---------- ---------- ----aaucu- 4021 ---------- -----aaCGA --AUAAG-GU A-A(------ ---------- ---------- 4081 ---------- ---------- -GAAAA-C-) U-UG-A--CU -U--UGAAG- -AAGGACUUG 4141 U-A--AGUAA G-GGUUGA(- aaaua-aa-- --)ACCGCCC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UA-----CA 4261 AUCAGA-UG- AGUACUAA-U -CGCCCGUCG C-UCG--CGG G--------- ---------- 4321 ---------- ---------- ---------- ---------- -(gaaa--)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- CCUG-UGA-A AAGUCGUAAC AAGGUAGC-A GUA-AC(GGA 4621 -A)GUU-GU- UGCUAGGCCA UAauau---| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.gigas 5213 bp RNA RNA 02-DEC-1997 DEFINITION Mitochondrion Crassostrea gigas.; . ACCESSION AF0346 8 KEYWORDS . SOURCE Mitochondrion Crassostrea gigas. ORGANISM Mitochondrion Crassostrea gigas. REFERENCE 1 (bases 1 to 976) AUTHORS Li,G. and Hedgecock,D. TITLE the hypothesis of large variance in reproductive success Genetic heterogeneity, detected by PCR-SSCP, among samples of larval Pacific oysters (Crassostrea gigas Thunberg) supports JOURNAL Can. J. Fish. Aquat. Sci. (1997) In press STANDARD No information REFERENCE 2 (bases 1 to 976) AUTHORS Li,G. and Hedgecock,D. TITLE Direct Submission JOURNAL Submitted (14-NOV-1997) Bodega Marine Lab., UC at Davis, 2099 Westside Road, Bodega Bay, CA 94923, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF034688 BASE COUNT 313 a 160 c 243 g 260 t 4237 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- -------agg agcauaauaa aguaaAUAUU 661 (UGG-)U-GC U|GGUAU--A AUG-UUAGCU -a-caga-gu |uu-uu--u- -aca-u-uac 721 -acaau--gu a----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------gga u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---aa-uu|- ccgugaugug uaaaagucug a|uuu----- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(acgugau a----)---- 1261 ---------- ---------- --------a- g-ccaagucu |--------- aaugcauc-- 1321 -cuaaaag-- -----(gaau ---------- ---------- ---------- ------)--- 1381 ---ag|---c uggca--gca g|gagca-ua --|------- (-agu--)-- -------uu| 1441 uuaa---uga ug(---ac-g c--)gaa--- -|-ggaa--( auca-)--ca acuc---a-a 1501 gug|ggu-ag aucuggaaau c-aaugagu- ---------- ----ucua)g cuuga-aac| 1561 g|-aau--a- aa-aaa---c uaac------ uaaa------ ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ucga-|-AGC 1921 -GAA-A---G AGGU-G(-CC AGCAGCU-GC -GGU-CA)CU CCCUCU|--- -CUC-GAG-g 1981 AGCUA-AUAA G---ggugca gcuuag-agg --caguua-- -gucaaaaa- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---uguguga cgcaa|gaca uacagcaagg -acuaugg(g 2341 ugaaa)ucuc ag------uc uugc-gggag --u------- ------ccaa -agc(-uugc 2401 -)gu|aa--- ---------- ---------a gau------- gaa--ucugc gaagu-uUAU 2461 G-GGC---AU AGAACCCGG( AUUUGGUAC) CCGG-UUAU| --UCC-AUA- auguca-agu 2521 a--uagc-ua |uu|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -uu(auuu)g aauuaauagu 2701 u-u---g|cu a-gGGG-UAC UACGAGC(-- -AACU--)GC UUA--AAACU CGAAGAAC-U 2761 UG|GCGGUU- CCGCAuaacc -auCCAGA|G GCUCUUGG-C |GCUUA-auC UG(AUGAUCC 2821 G--------- ----)CGUGA U-AUCUUACC UGCCCUAUAG ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------a ---a---AGC -AG-UG|UA- 3121 |CU|-GC--C |G------uc ga-aa|g-cu uau--gau-g --uga-gua- ------aau- 3181 aaa------- --aauaggcc caau-cuugg ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- -gguu-uuaa (-gua-a)uu aauaaucaug 3781 -------ccg aggcua-ggu C-AGGUCGAA G|UGCU|CCU UAU------- ---------G 3841 G-G-CA-AG- ggguua--GC -UGAGAGACA AA--uau--- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- -uuagaca-- 4021 ---------- --uauaaaga --uuuua-gg g-a(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-u-) c-uc-u--ua -g--uguaua uaaggaUUUG 4141 G-G--AGUAA A-AAGAGA(- guaac-uc-- --)GUUUUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------a agac--gcaa 4261 cUGCGG-UG- CGUUCAAA-U -CGCCCGUCA C-CCU--AGC C--------- ---------- 4321 ---------- ---------- ---------- ---------- -(gaaa--)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GGAG-AGG-U AAGUCGUAAC AUGGUaag-g u---ag(GGA 4621 -A)CUu-gc- ucuuuuaaug auaggggag- aaguaaagua ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.max.1 5213 bp RNA RNA 30-SEP-1996 DEFINITION Mitochondrion Pecten maximus. subsp. 5'noted in GB entry is wrong. str. correct 5' is approx. 100 upstream.; 12S ribosomal RNA; 16S ribosomal RNA; COI gene; cytochrome oxidase subunit 1; NADH dehydrogenase subunit 1; ND1 gene; transfer RNA-Ala; transfer RNA-Asn; transfer RNA-Gly; transfer RNA-Ile; transfer RNA-Lys; tRNA-Ala gene; tRNA-Asn gene; tRNA-Gly gene; tRNA-Ile gene. ACCESSION X92688 KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; COI gene; cytochrome oxidase subunit 1; NADH dehydrogenase subunit 1; ND1 gene; transfer RNA-Ala; transfer RNA-Asn; transfer RNA-Gly; transfer RNA-Ile; transfer RNA-Lys; tRNA-Ala gene; tRNA-Asn gene; tRNA-Gly gene; tRNA-Ile gene. SOURCE Mitochondrion Pecten maximus. subsp. 5'noted in GB entry is wrong. str. correct 5' is approx. 100 upstream. ORGANISM Mitochondrion Pecten maximus. REFERENCE 1 (bases 1 to 5529) AUTHORS Sellos,D., Mommerot,M. and Rigaa,A. TITLE the putative origin of replication Molecular cloning and sequencing of a 5.5kbp fragment flanking JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 5529) AUTHORS Sellos,D.Y. TITLE Direct Submission JOURNAL Submitted (31-OCT-1995) D.Y. Sellos, College de France/CNRS, Laboratoire de Biologie Marine, BP 225, 29182 Concarneau Cedex, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X92688 Related sequences: X67246, X82501, X80659 & X80660. BASE COUNT 266 a 176 c 259 g 297 t 4215 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -gaaguauug uguggUAGUU 661 (UGG-)U-UC U|GGUUA--C CUU-UGCUUG ---gcua-uu |ag-uu--u- -ggu---cga 721 uuaacac-au ggcag|uuua ugcggggg-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------aaug cguauaccgg 841 uuucuuucug ugggaagguc uaagauugcc uuucuguggg gggacucacg uuuguauaau 901 cagagaaacu cgauaacuau uaauaguaua auuc------ ---------- ---------- 961 --------|- ---------- ---------- -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- auac---c-u 1501 aaa|gug-GA UAGAUUUUAA C-UAUGAGC( ---------- ----GUAA)G CUUGA-UUA| 1561 A|-gcu--a- uu-guu---u auua------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- gagga|-guc 1921 -caa-c---C AGGU-G(-CC AGCAGUC-GC -GGU-UA)-A ACCUGA|--- -gua-acu-- 1981 CAAGU-CAAG U--------- -gggac|agu guaaaaggug ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- -----guuag acaguc|ugc uuuguauuuu 2281 cauuaaaaca aauguaauuu uugaaaaaag aagau|cgac ccgaggaag- ---uaggg(g 2341 ugcaa)ucuu au------gu auuu-ccuug agg------- ------gaag -ggg(-caca 2401 -)uu|cu--- ----ucuuua ---------g gcu------- gag--uccac ggaac-cggu 2461 u-aac---ug aAGACAUGG( AUUAGAUAC) CCAU-UUAU| --u-g-ccg- auguaa-acu 2521 u--ugcu-uu |uc|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------agug 2701 c-agccu|cc u-uggugUAC UACGAGC(-- -GAGU--)GC UUA--AAACU CAGAGAAC-U 2761 UG|GCCGGC- UGUUAa---c uacCUAGG|G GAAUAUCG-C |-cuua-auc cg(augaucc 2821 c--------- ----)cguca u-AUCUUACU GAGUCUUGAA ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -----aaagu g--c---AGC UGG-UG|UA- 3121 |UU|-GCgcC |G------uu gucca|g-cu ugu-|ugc(u u-cga)gca- ------aag- 3181 agaa------ --agcaggcu ugaaugga-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---ucccggu gauaaucuuc a--------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cggcaa 3781 ---------u ccauga-auu C-AGGUCGUA A|UACU|GCC UAU------- ---------G 3841 G-C-UC-AA- GG-GAG--CG -GGUGUUACA AU--ucauau uug------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- -----)---- ---------- ---------- ----gaau-- 4021 ---------- -----uaCGG --AUccu-ca u-u(------ ---------- ---------- 4081 ---------- ---------g UGGAAu---) c-uu-g--gg -g--UGAAG- -GUGAACUUA 4141 G-G--AGUAA G-GAGAGA(- uuaau-gu-- --)GCUUUCC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -cau--gaau 4261 cUAACU-CG- UGUACACA-U -CGCCCGUCG C-UCU--CGG C--------- ---------- 4321 ---------- ---------- ---------- ---------- -(gaga--)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GCUG-AGA-U AAGUCGUAAC AAGGUAGG-G GUA-CU(GGA 4621 -A)GGU-GCG CCCUGAGAAA uaauu----| ugauuu---- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.P.max.2 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Pecten maximus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Pecten maximus. ORGANISM Mitochondrion Pecten maximus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X67246 ID PM12SRRNA standard; DNA; INV; 856 BP. XX AC X67246; XX DT 10-AUG-1992 (Rel. 33, Created) DT 10-AUG-1992 (Rel. 33, Last updated, Version 1) XX DE P.maximus 12S rRNA gene XX KW 12S ribosomal RNA; transfer RNA-Lys. XX OS Pecten maximus OC Eukaryota; Animalia; Eumetazoa; Mollusca; Bivalvia; Filibranchia; OC Anisomyaria; Pectinoidea; Pectinidae. XX RN [1] RP 1-856 RA Sellos D.Y.; RT ; RL Submitted (09-JUL-1992) on tape to the EMBL Data Library by: RL D.Y. Sellos, College de France, Laboratoire de Biologie Marine, BP RL 225, 29182 Concarneau Cedex, FRANCE XX RN [2] RP 1-856 RA Rigaa A., Sellos D.; RT "12 S rRNA sequence from the marine mollusc pecten maximus"; RL Unpublished. XX CC *source: stage=adult; CC *source: tissue=gonade; CC *source: cell_type=ovocytes; XX FH Key Location/Qualifiers FH FT rRNA 1..755 FT /gene="12S rRNA" /evidence=EXPERIMENTAL FT misc_feature 756..766 FT /note="spacer" /evidence=EXPERIMENTAL FT tRNA 767..856 FT /gene="tRNA-Lys" /evidence=EXPERIMENTAL XX SQ Sequence 856 BP; 230 A; 151 C; 230 G; 245 T; 0 other; BASE COUNT 211 a 136 c 198 g 210 t 4458 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ----~~~~~~ ~~~~~~~~~~ 661 (~~~-)~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~-~~~~~ 721 ~~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ -~~~~)~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~--~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~aa)g cuuga-uua| 1561 a|-gcu--a- uu-guu---u auua------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- gagga|-guc 1921 -caa-c---c aggu-g(-cc agcaguc-gc -ggu-ua)-a accuga|--- -gua-acu-- 1981 caagu-caag u--------- -gggac|agu guaaaaggug ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 --------gu uagacagucu gcuuuguauu uuuauuaaaa acaaau--|- ---------- 2281 --------gu -aauuuuuga aaaaag--aa --gau|cgac ccgaggaag- ---uaggg(g 2341 ugcaa)ucuu au------gu auuu-ccuug agg------- ------gaag -ggg(-caca 2401 -)uu|cu--- -----ucuuu ---------a ggc------- uga--gucca cggaa-ccgg 2461 u-uaa--cug aAGACAUGG( AUUAGAUAC) CCAU-UUAU| --u-g-ccg- auguaa-acu 2521 u--ugcu-uu |uc|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------agug 2701 c-ag-cu|gc u-uGGG-UAC UACGAGC(-- -GAGU--)GC UUA--AAACU CAAAGAAC-U 2761 UG|GCGGCu- UGUUAa---c uacCUAGG|G GAAUAUgc-g |ccuua-auc cg(augaucc 2821 c--------- ----)cguca u-AUCUUAcU GAGUCuugaa ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -----aaagu g--c---AGC UGG-UG|UA- 3121 |UU|-GC--C |G------uu gu-ca|g-cu ugu-|ugu(u --cga)gca- ------aag- 3181 agaa------ ---acaggcu uaau-gga-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---ucccggu gauaaucuuc a--------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----cgggaa 3781 ---------u ccauga-auu C-AGGUCGUA A|UACU|GCC UAU------- ---------G 3841 G-C-UC-Aa- gg-gag--cg -gGUGUUACA AU--ucauau uug------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--- -----)---- ---------- ---------- ----gaau-- 4021 ---------- -----uaCGG --AUccu-ca u-u(------ ---------- ---------- 4081 ---------- ---------g UGGAAU-c-) --uu-g--gg -g--UGAAG- -GUGAACUUA 4141 G-G--AGUAA G-GAGAGA(- uuaau-gu-- --)GCUUUCC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -cau--gaau 4261 cUAACU-cG- UGUACAAA-C -UGCCCGUCG C-UCU--CGG C--------- ---------- 4321 ---------- ---------- ---------- ---------- -(gaga--)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GCUG-AGA-U AAGUCGUAAC AAGGUAGG-G GUA-CU(GGA 4621 -A)GGU-GCG CCCUGAGAAA ---------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.L.bleek 5213 bp RNA RNA 25-DEC-1997 DEFINITION Mitochondrion Loligo bleekeri.; tRNASerGCU; tRNA-Lys; tRNA-Trp; 12s rRNA; tRNA-Val; 16s rRNA; tRNA-Ile; tRNA-Gln; NADH dehydrogenase 1; tRNA-Pro; NADH dehydrogenase 6; cytochrome b apoenzyme; tRNA-Ser; NADH dehydrogenase 3; cytochrome c oxidase 2. ACCESSION AB0098 8 KEYWORDS tRNASerGCU; tRNA-Lys; tRNA-Trp; 12s rRNA; tRNA-Val; 16s rRNA; tRNA-Ile; tRNA-Gln; NADH dehydrogenase 1; tRNA-Pro; NADH dehydrogenase 6; cytochrome b apoenzyme; tRNA-Ser; NADH dehydrogenase 3; cytochrome c oxidase 2. SOURCE Mitochondrion Loligo bleekeri. ORGANISM Mitochondrion Loligo bleekeri. REFERENCE 1 (bases 1 to 8148) AUTHORS Tomita,K., Ueda,T. and Watanabe,K. TITLE sequencing Completing of squid (Loligo breekeri) mitochondiral genome JOURNAL Unpublished (1998) STANDARD No information REFERENCE 2 (bases 1 to 8148) AUTHORS Tomita,K. TITLE Direct Submission JOURNAL Submitted (15-DEC-1997) to the DDBJ/EMBL/GenBank databases. Kozo Tomita, University of Tokyo, Department of Chemistry & Biotechnology; 7-3-1, Hongo, Bunkyo-ku, Tokyo 113, Japan (E-mail: tomita@kwl.t.u-tokyo.ac.jp, Tel: 03-3812-2111, Fax:03-5800-6950) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AB009838 BASE COUNT 335 a 79 c 177 g 388 t 4234 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ------guaa aaaacaaugg ggugggugug gaccugaaug uuuuacguuu 541 uacuuuuaau uu----ggcu u-ugg--u-u au-aauau-- aagu-uauua u-uaagu-ua 601 -------uac a--gcuaggu uuaauagaua uaga][uuaa agcgguuugu uuauuuauua 661 cuguuuguau aaguuua--a uac-uuaaau ---aagc-ag -aa-gg--u- -UAU-A-UAG 721 -uaua----- -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------aua u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ------ua|- ug-------- ---------- -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- -|auaua--( auaag)--ug aacu---a-c 1501 GCA|GUA-UU UAUUUUUAUA C-AAUGGAU( ---------- ----GAAA)G UUUGA-UAU| 1561 A|-guua-g- ug-uaa---u uua------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- AAAGU|-GGU 1921 -UAA-A---U UGGU-G(-CC AGCAUCU-GC -GGU-UA)-U ACCAAU|--- -ACU-UUG-- 1981 aauuu-auau u-------ua aauagu|aua aaauaaagua -augauuauu uaaaugagau 2041 uagg------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ---------- ---------a uaaau|gagu auagua-auu ----guag(g 2341 uaaaa)uuua au------uu uuau-aau-- --u------- -------aau -uau(-auu- 2401 -)au|ccua- ---------- ---------a uuc------- uaa--auucu uugaa-aaua 2461 a-gauuugaG UAGACUAGG( AUUAGAGAC) CCUA-UUAU| --ucu-uua- uuuuaaa-a- 2521 ---------- |--|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- --auuuuauu auuuaag|ua g-UAAG-AGC U--AA-auaa 2701 u-aauuag-- -ugauauuua auuUAGA(-- -uugu--)GC UUG--AAACU UAAAAGGC-U 2761 UG|GCGGUA- UUAUAua-uc cuuCCAGG|G GAGCUUGC-U |UAuua-aUU UG(AUAUUCC 2821 U--------- ----)CAAUU U-AUACUUAC UUUUUCUUGA ---------- ---------- 2881 (--au---aa uu-)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- --------ac a--guu-ugu --g-ua|uug 3121 |cu|-GU--c |g------uc aguuu|a--u uuu-|gua-a --aaa-uuu- ------ugg- 3181 aa-------- ---aaaacuu uau--aau-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ----ggaugg 3781 ---------a uuauga-UGU C-AAGUCAAA A|UGCA|GCU UAU------- ---------G 3841 A-aaaa-gg- uu-uaaaaAG -UGAGCUACA GU--uugua- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- --auauuua- 4021 ---------- -----AUCUG --AUUAG-UU U-A(------ ---------- ---------- 4081 ---------- ---------- UGUAAu---) U-AA-A--UU -A--UGAAG- -UUGGACUUG 4141 G-U--AGUAA U-AAAAUA(u uuaaa-uagu g-)UGUUUUG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -uug--gguu 4261 uUAUAA-UG- CGUACAUA-U -CGCCCGUCG C-UCU--UGU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(ggaa--)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- GAUA-AGA-U AAGUCGUAAC AUAGUAGG-G GUA-GU(GGA 4621 -A)GCU-GU- UCCUGGAAua auacuacag| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.coeru 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Albinaria coerulea. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Albinaria coerulea. ORGANISM Mitochondrion Albinaria coerulea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X83390 LOCUS MIACDNA 14130 bp DNA UNA 05-SEP-1995 DEFINITION A.coerulea complete mitochondrial DNA. ACCESSION X83390 KEYWORDS ATPase 6; ATPase 8; COI gene; COII gene; COIII gene; cytb gene; lrRNA; ND1 gene; ND3 gene; ND4 gene; ND4L gene; ND5 gene; ND6 gene; srRNA; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu; tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser; tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val. SOURCE Albinaria coerulea. ORGANISM Mitochondrion Albinaria coerulea Eukaryota; Animalia; Eumetazoa; Mollusca; Gastropoda; Pulmonata; Stylommatophora; Mesurethra; Clausiliacea; Clausiliidae. REFERENCE 1 (bases 1 to 14130) AUTHORS Hatzoglou,E., Rodakis,G.C. and Lecanidou,R. TITLE The complete sequence of the mitochondrial genome of the land snail Albinaria coerulea JOURNAL Genetics 140, 1353-1366 (1995) REFERENCE 2 (bases 1 to 14130) AUTHORS Rodakis,G.C. TITLE Direct Submission JOURNAL Submitted (12-DEC-1994) to the EMBL/GenBank/DDBJ databases. G.C. Rodakis, Univ.of Athens, Dep. of Biochemistry, Cell and Mol. Biology and Genetics, Panepistimiopolis, Athens 157 01, GREECE COMMENT NCBI gi: 975668 FEATURES Location/Qualifiers source 1..14130 /organism="Albinaria coerulea" /mitochondrion CDS 11..1648 /gene="ND5" /note="starting codon=ATT, termination codon=TAG; pid:e197105; NCBI gi: 975669" /codon_start=1 /transl_table=5 /translation="MLLGVLCAIMGVIYMVLNMQNSSYLLMFNLFSTQSVNFNLALIC DKVSTSFLVVVLLISSCVFLFANEYMSEDHYNIRFGWILISFVASMGILILSGSIFTL LLGWDGLGLTSFALIAYYDNYNASSSAFLTLMTNRLGDVLIIATFSVILVTGLTVHFP PYTLVWLSSILFTIASFTKSAQYPFSAWLPAAMAAPTPVSALVHSSTLVTAGIYLMIR CFMVDGAPAEMYSLMGLVGSITCLLGGSVALFEYDLKKVIALSTLSQLGVMMYSLSLN LPYLALLHLYGHAMFKAMLFLGAGLILMMSYGTQDLRLLGSLLYSSPIVISLLNISML CLMGFPFVSSFYSKHLILEKMLDMNCNFFTSMMFMLGTLLTGMYSIRLMKFLCWGNNN NKPSYCNMSWQSKMSMFPLAALAVLSGQLMSYLDSSYMTFSWSTNQYNLILWGVLFLS IFFGIVMKFGNFYPTLMSSMMFLGPTSYNLLHYTKSLLIYMKRIDLSISEPNWVMSNL MYSSSWRVMSLFNWLTNYMLVTWFLLVWLMIMSILMW" CDS 1642..2541 /gene="ND1" /note="starting codon=ATG, termination codon=TAA; pid:e197094; NCBI gi: 975670" /codon_start=1 /transl_table=5 /translation="MVVFKSLLLNLCILLSVAFYTLLERKVLSSMQIRKGPNKVGLYG IIQPIADALKLFLKEFFIPVNSNSFMFMILPLLGLTLSLMLWAVFPSMWMFNFHSYLL MLFVALTGTFVYVIIFAGWSSNSKYSFLGGMRAAAQTISYEVSMLLLLFFAVLMYRTY SWYEAGLSSPIGIIIFIIMFIWFASCLAETNRAPFDFAEGESELVSGFNIEYYGGMFA LLFLAEYSSILFMCMMSTVWFLYSDMIFIMTLLILLIAMAFLFARGVYPRHRYDLLMN LCWKSFLPFSLCCICYSMLLWIV" CDS 2549..2846 /gene="ND4L" /note="incomplete termination codon=T; pid:e197095; NCBI gi: 975671" /codon_start=1 /transl_table=5 /translation="MTIYSYLLLLCMVMFVTFFTQKNNILSLMVVLESLMLITLSSVA VSLNYMAGSSMVMILLLCFAAAEAALSLSLLVCFIQVNSSCEMLAMNKILFAKKS" CDS 2847..3949 /gene="cytb" /note="starting codon=ATA incomplete termimnation codon=TA; pid:e197101; NCBI gi: 975672" /codon_start=1 /transl_table=5 /translation="MAESMLSLPTPLNISIWWNMGSILGMILGLQLLTGILLSMHYSS QLEMAFSSIIHIIRDVPGGWFLRLLHANGASLFFLFMYAHIGRGLYYQSYIIHPRVWM VGVTIFLVSMATAFLGYVLPWGQMSFWGATVITNLLSAVPYFGPSMVEWVWGGFSVGH ATLNRFFSLHFLLPFLISGLALLHIIFLHDKGSSNPLGNLFHLSKKPFHPYFTIKDSV GFLMVFGVLLMITFFSPSLLLDPENYISANPMVTPTHIQPEWYFLFAYAILRSIPSKL GGVVALLMSILILYFLPLSSYGKSIPVSMNIIYQVLFWILVVTFIILTWLGACEIEEP YLSLAGPLTLLYFLMFLLLGMSNNLNFNLIQLK" tRNA 3950..4016 /anticodon=(pos:3981..3983,aa:Asp) /product="tRNA-Asp" tRNA 4012..4079 /anticodon=(pos:4044..4046,aa:Cys) /product="tRNA-Cys" tRNA 4080..4149 /anticodon=(pos:4115..4117,aa:Phe) /product="tRNA=Phe" CDS 4153..4827 /gene="COII" /note="pid:e197096; NCBI gi: 975673" /codon_start=1 /transl_table=5 /translation="MSTWGQINLMDPASPIQMEMMLFHDHAMAILIGIFTLVSLLGVK LCFNTLSTRTMHEAQLLETLWTILPAFLLVWLALPSLRLLYLLDEQGSEGIILKAIGH QWYWSYEMPSMNISNFDSYMIPEEDLKPGDYRLLEVDNRPMVPYGLDINVITTSADVI HAWALPSMGVKMDAVPGRLNSMGFHANLPGIYYGQCSEICGANHSFMPITVEAIDVKD FIKMCN" tRNA 4849..4912 /anticodon=(pos:4879..4881,aa:Tyr) /product="tRNA-Tyr" tRNA 4908..4975 /anticodon=(pos:4939..4941,aa:Trp) /product="tRNA-Trp" tRNA 4977..5043 /anticodon=(pos:5008..5010,aa:Gly) /product="tRNA-Gly" tRNA 5040..5107 /anticodon=(pos:5072..5074,aa:His) /product="tRNA-His" tRNA complement(5112..5172) /anticodon=(pos:5142..5144,aa:Gln) /product="tRNA-Gln" tRNA complement(5171..5237) /anticodon=(pos:5204..5206,aa:Leu) /product="tRNA=Leu(UUR)" CDS complement(5254..5421) /gene="ATPase8" /note="start codon=CAT, termination codon=CTA; pid:e197106; NCBI gi: 975674" /codon_start=1 /transl_table=5 /translation="MPQLSPMNGLLIMFSVTLMLLIVLVINHFMLTPMASPLLASHLK TKKSGGEKLYY" tRNA complement(5423..5483) /anticodon=(pos:5453..5455,aa:Asn) /product="tRNA=Asn" CDS complement(5484..6126) /gene="ATPase6" /note="start codon=CAT, incomplete termination codon=A; pid:e197103; NCBI gi: 975675" /codon_start=1 /transl_table=5 /translation="MMVDLFSSLDGMTSLWSWLTPMFLSVFMIWNKTWSMDQNNIIKY LAASNWNNSTYNLTKSLLTIMMVLIIFNNLLGMAPFTYGITTSLWVNMTLALLLWGLI LLSGYIKSPKKSLAHLAPSGAPLLLLPFLILIESISIMIRPLTLTVRLVANMSAGHII LALMASVLSSNLSNTSLSLSYLIMVGYYLFEFFVCFIQAYIFTLLLSLYMNEHP" tRNA complement(6128..6194) /anticodon=(pos:6162..6164,aa:Arg) /product="tRNA-Arg" tRNA complement(6198..6269) /anticodon=(pos:6133..6235,aa:Glu) /product="tRNA-Glu" rRNA complement(6270..7028) /product="srRNA" tRNA complement(7029..7089) /anticodon=(pos:7057..7059,aa:Met) /product="tRNA-Met" CDS complement(7090..7441) /gene="ND3" /note="starting codon=TAT, incomplete termination codon=A; pid:e197097; NCBI gi: 975676" /codon_start=1 /transl_table=5 /translation="MILYVLPTSLSLCLLLMIIYLLTANLFKFASYELKTPFECGFDP LSNMRSPMTTRFFILTVLFLIFDVEVVLLFPVLSMVSFMTSPLIIMSIILFMMVLLIG LLYEMYYGVLDWVLN" tRNA complement(7451..7518) /anticodon=(pos:7486..7488,aa:Ser) /product="tRNA-Ser(UNC)" tRNA complement(7507..7564) /anticodon=(pos:7528..7530,aa:Ser) /product="tRNA-Ser(AGN)" CDS 7565..8878 /gene="ND4" /note="pid:e197102; NCBI gi: 975677" /codon_start=1 /transl_table=5 /translation="MTYLILLGASICLFPFWEVTMLTLAFIIPMSLTYLNINFTFSFS SELIWLTPIGTALIFLTLMVTLLVLIGTYNIKNYKYIGCLSSLNLVLMMAFCVCDFLT FYVMFEVSLIPTLLLILLWGYQPERMQAGFYLMLYTVTASLPLLLLLLYLYYTVGSLN FYIIMVYYSFNNNPLMLVGLMMAFLVKLPIYTCHLWLPKAHVEAPLGGSMVLAGVLLK LGGYGLYMLINFIISKSSSLVISVIITLSLWGAVIASIICIQQVDIKALVAYSSVAHM SLVSAGILMMSNWSYTCAKMTMIAHGYTSSALFVLANLSYLKIKSRSLMFMKGLLAIF PAMAFYWFLFSCMNMAAPPTLNFIGELLIIPSMYIASYMLLILMCIIMFISAGYSLYM YMTVNHGELGLYITPSIQLKNVDYHVLTAHLLPTFILLIPQLFSV" tRNA complement(8888..8953) /anticodon=(pos:8919..8921,aa:Thr) /product="tRNA-Thr" CDS complement(8961..9740) /gene="COIII" /note="start codon=CAT, termination codon=TAA; pid:e197104; NCBI gi: 975678" /codon_start=1 /transl_table=5 /translation="MQKTPFHLVEYSPWPLLVSLSLTSMPLGLIYYIRFGSIYLLLYG MLLTSIIAYMWWRDIVREATYQGHHTTYVVKGLKLGMALFILSEVCFFFAFFWAYFHS SLAPSIEIGSVWPPIGITVLNVFQVPLLNTSVLLLSGVSITWAHHALTEGKYYSTLSG LFFTVLLGVYFLMLQYGEYNETSFSIADGVYGSTFFMATGFHGLHVMVGTLFLFVNLV RTYYYHFSTTHHVGFLAAAWYWHFVDVVWLFLYISIYWWGS" tRNA 9783..9849 /anticodon=(pos:9814..9816,aa:Ile) /product="tRNA-Ile" CDS 9850..10773 /gene="ND2" /note="pid:e197099; NCBI gi: 975679" /codon_start=1 /transl_table=5 /translation="MTLQSVLLGAMIILGPILSMTSSNWIIIWIGLEISLLGFVSYYM LMKKIMSGEGIMMYFLIQSVSSTVMLLNGLYIFVNHASSYIYLFIFITMLMLKIGMFP LHFWIIPVYSKLSYLNIGIVGLLLKIVPMWILMHMGCITSEMLNLITMLSVTSMLFGA LIGMNLSKMRMVLGASTITHNGWLGMSCISGSLFKYFITYGFSLVILLVFLYLGDKMS ISLSLLSLSGLPPFMLFIGKINVLLMMMETNLWFIVLVFAILSAVISLVYYLKFSVMF FMNMKNNYLKHYKMAMFLLVNVTFGMLLFLT" tRNA 10774..10840 /anticodon=(pos:10805..10807,aa:Lys) /product="tRNA-Lys" CDS 10834..12363 /note="start codon=TTG, incomplete terminition codon=TA; pid:e197098; NCBI gi: 975680" /codon_start=1 /transl_table=5 /translation="MRWFYSTNHKDIGTLYMLFGIWCGMVGTGLSLLIRLELGTSGTL TDDHFYNVIVTAHAFVMIFFMVMPIMIGGFGNWMVPLLIGAPDMSFPRMNNMSFWLLP PAFILLICSSMVEGGAGTGWTVYPPLSSSLAHSGASVDLAIFSLHLAGMSSILGAINF ITTIFNMRSPGMTMERVSLFVWSILVTVFLLLLSLPVLAGAITMLLTDRNFNTSFFDP AGGGDPILYQHLFWFFGHPEVYILILPGFGMISHILGNSAMKQPFGTLGMIYAMISIG ILGFIVWAHHMFTVGMDVDTRAYFTAATMIIAIPTGIKVFSWLMTIYGSKVQYTASMY WVLGFIFLFTLGGLTGIVLSNSSLDIMLHDTYYVVAHFHYVLSMGAVFAIFAGFNFWF PVMTGLILHERLAKAQFVVMFIAVNMTFFPQHFLGLAGMPRRYSDYPDSYFMWNQLSS YGSLMSVFAVLLFVLIVWEAFLSQRSLLFVDATLYSREWSDGYFPPDFHSNIYQSYIT I" tRNA 12363..12427 /anticodon=(pos:12395..12397,aa:Val) /product="tRNA-Val" rRNA 12428..13462 /product="lrRNA" tRNA 13463..13526 /anticodon=(pos:13491..13493,aa:Leu) /product="tRNA-Leu(CUN)" tRNA 13523..13587 /anticodon=(pos:13552..13554,aa:Pro) /product="tRNA-Pro" tRNA 13586..13655 /anticodon=(pos:13617..13619,aa:Ala) /product="tRNA-Ala" CDS 13663..14130 /gene="ND6" /note="pid:e197100; NCBI gi: 975681" /codon_start=1 /transl_table=5 /translation="MMSLTFMAGLIFPVFMMLKGINPMSLLLALLTLSLCAVLWLGSF MSSWYAYILFIVYIGGILVLFIYVCMISSNYIASQHMYKSLLYAWGAVMLMSLTMETD TFIILGSNMMYTSVNIPMTILIFLSIYLLIVFFAVVNLMVNMTSILMVESSQV" misc_feature 10834..12362 /gene="COI" BASE COUNT 4628 a 1951 c 2196 g 5355 t ORIGIN BASE COUNT 295 a 98 c 117 g 249 t 4454 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ----cccacu 661 (uua-)A-UU U|gaugGaua ucg-uaagca -a-uaaa-ua |ug-gu--ua -AAU-A-UGG 721 -aucc----- -----|---- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- ---------- ---------- -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- -----(---- ---------- ---------- ---------- ------)--- 1381 -----|---- ---------- -|-------- --|------- (------)-- ---------- 1441 -ug------- ---------- ---------- -|-aagu--- -----gua-g cauu---c-u 1501 CCA|GUU-ua agauuUUAAA U-UAUAUAA( ---------- ----GAAA)U UAUAA-UUU| 1561 A|-g-ac-a- gu-uua---u ua-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- AUUUA|-GGU 1921 -UUA-U---U AGGU-G(-CC AGCAACC-GC -GGU-CA)-A ACCUAA|--- -UAA-GUU-- 1981 agcuu-acaa g-------u- uuauua|aau u-acuua--- ---u------ ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ---------a auucuu--ua a----|agua auauaa-ua- ----aAUG(G 2341 UGAAA)UAUu au-------u auga-aua-- --u------- --------ua -auu(-cuca 2401 -)aa|ag--- ----uauggc u--------- ---------- --a------u aaCAA-AUUC 2461 A-UAG---AU AAAACUAGG( AUUAGAGAC) CCUA-CUAU| --UAU-GAC- cccaac-uaa 2521 g--------- |--|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------ua 2701 a-u|--u|ua a-UAAG-GAU UAAAAUU(-- auauu--)AA UUC--AAACU UAAAAAUU-A 2761 UG|GCGGCU- AAAUAaa-u- cauUUAGG|G GAACUUAC-C |auAUA--aU UG(AUAACCA 2821 C--------- ----)CAAGC A-UUAUUAUA CUUACUUUUU ---------- ---------- 2881 --aaa----- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---a---aAU UUG-UA|UA- 3121 |CC|-GU--U |G------UC UU-CA|U-GA ACC-|CCU(A --CAA)AGG- -----(---- 3181 ---)------ ---GGUUCAu gaa-uauu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----aauca 3781 ---------a auauuA-AGA C-AAAUCAAG G|UGCA|GUC UAU------- -------ugG 3841 U-A-AG-AA- -u-uaa--GG -UGAGUUACA UU--aa---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uaa--)---- ---------- ---------- ----uuua-- 4021 ---------- -----uuCGG --ACUAC-GA a-a(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) A-AU-U--GU -A--UAAAG- -AUGGACUUA 4141 A-A--AGUAA U-AUauaa(- ggaua-au-- --)uaaaAUA U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ca---uguu 4261 uUAUUU-GG- UGUACAAA-U -CGCCCGUCA C-UCU--CGC U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(gaaa--)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- AGGG-AGA-U AAGUCGUAAC AAAGUAGG-G GUA-GU(GGA 4621 -A)GCU-GC- CCCUAauaau auacuuacac cauguaguag ua~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.nemor 5213 bp RNA RNA 11-JAN-191 DEFINITION Capaea nemoralis. ACCESSION No information KEYWORDS No information. SOURCE Capaea nemoralis. ORGANISM Capaea nemoralis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U23045 ID MICNMU230 standard; circular DNA; ORG; 14100 BP. XX AC U23045; XX DT 19-MAY-1995 (Rel. 43, Created) DT 19-MAY-1995 (Rel. 43, Last updated, Version 1) XX DE Cepaea nemoralis complete mitochondrial genome. XX KW . XX OS Cepaea nemoralis OC Eukaryota; Animalia; Eumetazoa; Mollusca; Gastropoda; Pulmonata; OC Stylommatophora; Sigmurethra; Holopoda; Helicacea; Helicidae. XX OG Mitochondrion XX RN [1] RP 1-14100 RA Terrett J.A., Miles S., Thomas R.H.; RT "Complete DNA sequence of the mitochondrial genome of Cepaea RT nemoralis (Gastropoda: Pulmonata)"; RL Unpublished. XX RN [2] RP 1-14100 RA Thomas R.H.; RT ; RL Submitted (18-MAR-1995) to the EMBL/GenBank/DDBJ databases. RL Richard H. Thomas, Department of Zoology, The Natural History RL Museum, Cromwell Road, London, SW7 5BD, England XX CC NCBI gi: 733433 XX FH Key Location/Qualifiers FH FT source 1..14100 FT /organism="Cepaea nemoralis" FT /tissue_type="hepatopancreas" FT /dev_stage="Adult" FT /mitochondrion FT CDS 1..1530 FT /note="NCBI gi: 733434" FT /codon_start=1 FT /product="cytochrome oxidase subunit 1" FT tRNA 1531..1590 FT /anticodon=(pos:1561..1563,aa:Val) FT /product="tRNA-Val" FT rRNA 1586..2800 FT /note="16S rRNA" FT tRNA 2805..2864 FT /anticodon=(pos:2834..2836,aa:Leu) FT /product="tRNA-Leu(CUN)" FT tRNA 2866..2927 FT /anticodon=(pos:2896..2898,aa:Ala) FT /product="tRNA-Ala" FT CDS 2922..>3413 FT /note="followed by putative incomplete stop codon 'TA'; FT NCBI gi: 733435" FT /codon_start=1 FT /product="NADH dehydrogenase subunit 6" FT tRNA 3417..3479 FT /anticodon=(pos:3446..3448,aa:Pro) FT /product="tRNA-Pro" FT CDS 3638..5167 FT /note="NCBI gi: 733436" FT /codon_start=1 FT /product="NADH dehydrogenase subunit 5" FT CDS 5176..>6057 FT /note="followed by putative incomplete stop codon 'TA'; FT NCBI gi: 733437" FT /codon_start=1 FT /product="NADH dehydrogenase subunit 1" FT CDS 6062..>6298 FT /note="followed by putative incomplete stop codon 'TA'; FT NCBI gi: 733438" FT /codon_start=1 FT /product="NADH dehydrogenase subunit 4L" FT CDS 6298..7440 FT /note="NCBI gi: 733439" FT /codon_start=1 FT /product="cytochrome b" FT tRNA 7477..7536 FT /anticodon=(pos:7507..7509,aa:Cys) FT /product="tRNA-Cys" FT tRNA 7539..7599 FT /anticodon=(pos:7569..7571,aa:Phe) FT /product="tRNA-Phe" FT CDS 7599..8252 FT /note="NCBI gi: 733440" FT /codon_start=1 FT /product="cytochrome oxidase subunit II" FT tRNA 8245..8301 FT /anticodon=(pos:8272..8274,aa:Tyr) FT /product="tRNA-Tyr" FT tRNA complement(8473..8530) FT /anticodon=(pos:8499..8501,aa:Gln) FT /product="tRNA-Gln" FT CDS complement(8581..8742) FT /note="NCBI gi: 733441" FT /codon_start=1 FT /product="ATPase subunit 8" FT tRNA complement(8744..8804) FT /anticodon=(pos:8764..8766,aa:Asn) FT /product="tRNA-Asn" FT CDS complement(<8828..9385) FT /note="followed by putative incomplete stop codon 'TA'; FT NCBI gi: 733442" FT /codon_start=1 FT /product="ATPase subunit 6" FT tRNA complement(9427..9489) FT /anticodon=(pos:9457..9459,aa:Arg) FT /product="tRNA-Arg" FT tRNA complement(9484..9545) FT /anticodon=(pos:9512..9514,aa:Glu) FT /product="tRNA-Glu" FT rRNA complement(9553..10262) FT /product="12S rRNA" FT CDS complement(10272..10676) FT /note="NCBI gi: 733443" FT /codon_start=1 FT /product="NADH dehydrogenase subunit 3" FT tRNA complement(10691..10750) FT /anticodon=(pos:10718..10720,aa:Thr) FT /product="tRNA-Thr" FT CDS complement(<10752..11564) FT /note="followed by putative incomplete stop codon 'TA'; FT NCBI gi: 733444" FT /codon_start=1 FT /product="cytochrome oxidase subunit III" FT tRNA 11723..11777 FT /note="tRNA-Ser(AGN)" FT /anticodon=(pos:11746..11748,aa:Ser) FT CDS 11813..>13061 FT /note="followed by putative incomplete stop codon 'TA'; FT NCBI gi: 733445" FT /codon_start=1 FT /product="NADH dehydrogenase subunit 4" FT tRNA 13069..13128 FT /note="tRNA-Ile" FT /anticodon=(pos:13096..13098,aa:Ile) FT CDS 13154..>14098 FT /note="followed by putative incomplete stop codon 'TA'; FT NCBI gi: 733446" FT /codon_start=1 FT /product="NADH dehydrogenase subunit 2" XX SQ Sequence 14100 BP; 3689 A; 2671 C; 2998 G; 4742 T; 0 other; BASE COUNT 240 a 135 c 138 g 197 t 4503 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---aaccaaa ua(ugg)uaa c|uccuuu-- -aaagaugau 661 -aua--u-ug a-uguccaau auu---cgc- -g-agau-gu |ac-cu--u- -auc-a-ugg 721 ---------- -----|---- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- ---------- ---------- -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- -----(---- ---------- ---------- ---------- ------)--- 1381 -----|---- ---------- -|-------- --|------- (------)-- ---------- 1441 ---------- ---------- ---------- -|-acag--- -----cag-c ugca---u-u 1501 CCA|GUU--a aaauuuuuga u--a-ucag( ---------- ----gcaa)c uggga-uua| 1561 u|-ggua-a- ca-uua---a a--------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- UUAGC|-GAC 1921 -UAU-U---A ACGU-G(-CC AGCAGUC-GC --GU-CA)-C ACGUUA|--- -GCU-AAA-- 1981 aggga-uaau a--------- -cagga|gcu u-ca------ ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ---------- --gcua--uu -----|gauc ugcuuu-gg- ----cGUA(G 2341 UGAAA)UGCg aa-------c cag------- --c------- --------au a-au(-aucu 2401 -)au|a---- ----aauagu --------gu ac-------- ---------- --------ug 2461 a-agu---gu gacaacggg( au-agacac) cu---cuau- --gca-ccu- a--------- 2521 ---------- |--|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --u(augc)a ac-------- 2701 ---|--g|CC C-UGGG-GAC UACAAG-(-- -AACA--)-C UUC--AAACU CAAUcaac-A 2761 UG|GCGGUU- GUUCAaa--- cauUUAGG|G GAACUUAC-U |AGGUA--AA UG(AUACUCA 2821 U--------- ----)CAAGA A-AGUCUACA AUCACUAUAU ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- --------uu -ug-ca|UA- 3121 |CC|-GU--C |G------UC GU-CA|g-au auc-|uua(u ---aa)uaa- -----(---- 3181 ---)------ ---gacguca aa-agcuu-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- --------ag 3781 ---------a ag-aaa-aga C-AGAUCAAG -|cgua|gau aac------- ---------G 3841 U-G-GU-UG- -A-CUC--AG -CGAGUUACU AU--ga---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--c aau--)---- ---------- ---------- ----ucaac- 4021 ---------- ----uCACUA --UUUUU-AG C-A(------ ---------- ---------- 4081 ---------- ---------- caagug-u-) U-UU-U--AA -G--CAGUG- -CAGGACUUA 4141 A-A-aAGUAA U-AUAuau(- -uuag-ua-- --)uacUAUA U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -ua---cuuc 4261 uUGAAC-UG- UGCACAAA-U -CGCCCGUCA C-UCU--CGA A--------- ---------- 4321 ---------- ---------- ---------- ---------- -(acua--)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- UUUGaAGA-U AAGUCGUAAC AUAGUAGA-A GUA-GC(GGA 4621 -A)GCU-GC- UUCUAaugcg cccg-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.E.herkl 5213 bp RNA RNA 02-DEC-1996 DEFINITION Euhadra herklotsi; ATPase; NADH dehydrogenase; small subunit ribosomal RNA; transfer RNA-Arg; transfer RNA-Glu; transfer RNA-Met. ACCESSION Z71698 KEYWORDS ATPase; NADH dehydrogenase; small subunit ribosomal RNA; transfer RNA-Arg; transfer RNA-Glu; transfer RNA-Met. SOURCE Euhadra herklotsi. ORGANISM Euhadra herklotsi. REFERENCE 1 (bases 1 to 1313) AUTHORS Segawa,R., Kobayashi,T., Numachi,K., Ueda,T., Nishikawa,K., Watanabe,K. and Thomas,R.H. Yamazaki,N., Ueshima,R., Terrett,J.A., Yokobori,S., Kaifu,M., TITLE Evolution of pulmonate gastropod mitochondrial genomes: comparisons of complete gene organization of Euhadra, Cepaea and Albinaria and implications of unusual tRNA secondary structures JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1313) AUTHORS Yokobori,S. TITLE Direct Submission JOURNAL Submitted (20-MAY-1996) Shin-ichi Yokobori, Institute of Zoology, University of Munich, Luisenstrasse 14, Munich, D80333, Germany STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z71698 BASE COUNT 355 a 135 c 140 g 320 t 4263 others ORIGIN 1 |uuaguaauu cucuuuuugc uuuuugaugu agaagcugua uuauuauuuc cuuguuuaau 61 aaauauaauc aaaucacuag accuuagauu auuaguuaau auaauacuau uuuuaauaau 121 cuuaauaguu gguuuauuau acgaaugaaa aaacaauaua uuagacugau cuaaauaacc 181 uuuaaguaag cuauauaagc uguugggcuc auaacccaaa aaaggggccu ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ucccuuaaag a---aaauu- 661 ------u-ac ---uaugguu caauauucac -a-uuaa-ac |ug-ga--ua -cuu-a-ugg 721 -uauuau-ua g----|---- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- ---------- ---------- -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- -----(---- ---------- ---------- ---------- ------)--- 1381 -----|---- ---------- -|-------- --|------- (------)-- ---------- 1441 ---------- ---------- ---------- ---------- --------ag gag------a 1501 cca|ggc-aa gaaaauuuua a--AUUUAC( ---------- ----UAAA)G UAAGA-uua| 1561 a--acca-c- cu-uau---u ac-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ACUAU|-GAC 1921 -UAA-A---A AAGU-G(-CC AGCAGUC-GC -GGU-CA)-G ACUUUU|--- -AUA-GUg-g 1981 ugaaa-uuuu a--------- -aaGUG|uaa u-aagc---- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ---------- -----u--ua -----|uaac a--ucu-au- ----aUUG(G 2341 UGAAA)UGAU auuu-----a uaaa-cuu-- --g------- --------ua --ua(--aac 2401 -)ua|ua--- ----uaaag- ---------- ---------- ---------a acCUA-AUAU 2461 U-GAC---UA UAAACAAGG( AUUAGAUAC) CCUU-CUAU| --ACA-AUA- cuuacauauu 2521 u--cu----- |--|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------a|CA C-UGAG-CAC UAAGACC(-u ucuaa--)GG UUA--AAACU CAAAUAGC-A 2761 UG|GCGGUA- AUUUUaa--- aauUUAGG|G GAACUUAC-C |AAGUA--AU UG(AUAGCCA 2821 C--------- ----)CAAGG A-AAUCUACU UUAAUGUAAU ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------aUU UUG-UA|UG- 3121 |CC|-GU--C |G------UC AA-CA|caua aua-|uau(a ---au)aua- ------uua- 3181 ucu------- ---uauuagu auc--ag--- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -------uaa 3781 ---------- cuaaua-guA C-AuAUCA-- G|UGCA|CAu uau------- -------c-G 3841 U---AA-AG- -U-UUA--GG -CGAGUUACA AU--uu---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u guu--)---- ---------- ---------- ----aa---- 4021 ---------- ------GCGA --AAAUU-GA c-u(------ ---------- ---------- 4081 ---------- ---------- UGAAA----) a-aU-C--AA -U--UGAAG- -GAGGACUUA 4141 A-A--UGUAA U-UUaaaa(- uuacu-ca-- --)uaaaAAA U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- uaa---auua 4261 uAAAAU-UG- UGUACAAA-U -CGCCCGUCA C-UCU--UGG G--------- ---------- 4321 ---------- ---------- ---------- ---------- -(cuca--)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- CCUA-AGA-U AAGUCGUAAC AUAGUAGG-C GUA-GC(GGA 4621 -A)GCU-GC- UCCUAguuuu cguaguau-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.K.tunic 5213 bp RNA RNA 12-OCT-1994 DEFINITION Mitochondrion Katharina tunicata.; . ACCESSION U09810 KEYWORDS . SOURCE Mitochondrion Katharina tunicata. ORGANISM Mitochondrion Katharina tunicata. REFERENCE 1 (bases 1 to 15532) AUTHORS Boore,J.L. and Brown,W.M. TITLE black chiton, Katharina tunicata Complete DNA sequence of the mitochondrial genome of the JOURNAL Genetics 138, 423-443 (1994) STANDARD No information REFERENCE 2 (bases 1 to 15532) AUTHORS Boore,J.L. TITLE Direct Submission JOURNAL Submitted (17-MAY-1994) Jeffrey L. Boore, Cell Biology and Neuroanatomy, University of Minnesota, 321 Church St. SE, Minneapolis, MN 55455, USA STANDARD full automatic COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U09810 NCBI gi: 557273 BASE COUNT 343 a 123 c 118 g 296 t 4333 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---auAAAUU 661 (UGG-)U-UC U|AGUUU--a uaa-UUAAUU -a-auuc-uu |uu-ag-aaa -CAC-A-UGA 721 -uaguu---u u----|---- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------gcc ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ------ga|a gcuguaaaga u-------aa a-aauaaacu uua------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(uuuguau a----)---- 1261 ---------- ---------- --------a- a-uuauaaaa ---------- aauauuua-- 1321 uuuuuaag-- ------auau ca-------- ---------- ---------- ---------- 1381 ---------- ---------- --auu---au ---------- (-uuca-)-- -----agac| 1441 auc------- ---------- ---------- ---gcuu--- --------ac ca-----c-u 1501 UCA|GUG-uU AAAgAUUAAA --AACAAAA( ---------- ----GAyA)U UUaGG-UUU| 1561 A|-Gaa--a- ua-gau---u uca------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAACU|-AGU 1921 -UAA-A---U UUGU-G(-CC AGCAACU-GC -GGU-UA)-U ACAAAA|--- -GGU-UCA-- 1981 AGUUA-aucu a--------- aaCGGU|aaa a-g-guagUU -A-uuu---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ------u--- ---uauaaag auguca--ga u----|uaua -aaaaa-uga ----aAAA(G 2341 UAAAA)UUUA CA-------u uuuu-uu--- --a------- ---------- u-ca(--ccu 2401 -)uc|u---- ----ucuuac --------ua aa-------- aaa-gacgcu acAAA-AAUU 2461 U-UAA---CU AAAACUGGG( AUUAGAUAC) CCCA-CUAU| --UAA-AAA- auuaaa-uca 2521 u--ua----- |--|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---|--c|AC C-AGAG-UAU UACGAAU(a- -aauauu)GU UUA--AAACU UAAAGAAC-U 2761 UG|GCGGUG- UCUUAuu-cc uuuCUAGG|G GAACCUgu-a |uuuua-acu CG(ACAACCC 2821 G--------- ----)CGcuu u-ACCUCACU UUACUUAAAU ---------- ---------- 2881 -uuua---cu a--------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---g---uuu --g-ua|UA- 3121 |cu|-uc--c |g------uc au-aa----- -----guu(a --ac-)uac- -------uc- 3181 a--------- ---------- -----aga-- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---caacuc- 3781 ---------u cuauua-uga c-aggucaaa a|cgcc|agU UAU------- ---------A 3841 G-U-AA-AG- au-aaua--u uaGGGUUACA AU--uuaa-- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------a uuu-aaaa-- 4021 ---------- -----uaCGG --AAauc-ua u--(------ ---------- ---------- 4081 ---------- ---------- UGCAAu-ua) u-au-u--ua -a--UCAAG- -GCGGACUUA 4141 G-A--AGUAA A-AAUAAA(u uauga-ac-- --)AUUAUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- --aa--agcu 4261 cUAAGA-CG- UGUACAUA-U -CGCCCGUCA C-UCU--CUU U--------- ---------- 4321 ---------- ---------- ---------- ---------- -(uuaa--)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- AAAG-AGA-U AAGUCGUAAC AUAGUAGG-A GUA-GC(UGA 4621 -A)GCU-GU- UCCUUaaaau gaagcaaaaa ucuugcauuu uauuuacacu aaaaaguuag 4681 ucuaaaaag~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (7)-Pseudo 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS (8)-Nemato 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.A.suum 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Ascaris suum. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Ascaris suum. ORGANISM Mitochondrion Ascaris suum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X54253 ID MTAS standard; DNA; ORG; 14284 BP. AC X54253; DT 30-SEP-1991 (Rel. 29, Last updated, Version 2) DT 30-SEP-1991 (Rel. 29, Created) DE A. suum complete mitochondrial genome KW ATPase 6; COI gene; COII gene; COIII gene; cytb gene; KW large ribosomal RNA; ND1 gene; ND2 gene; ND3 gene; ND4 gene; KW ND4L gene; ND5 gene; ND6 gene; small ribosomal RNA; tRNA-Ala; KW tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; KW tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu; tRNA-Lys; tRNA-Met; KW tRNA-Phe; tRNA-Pro; tRNA-Ser; tRNA-Thr; tRNA-Trp; tRNA-Tyr; KW tRNA-Val. OS Ascaris suum OC Eukaryota; Animalia; Metazoa; Nemata; Secernentea; Rhabditia; OC Ascaridida; Ascaridina; Ascaridoidea; Ascarididae. OG Mitochondrion RN [1] RP 1-14284 RA Wolstenholme D.R.; RL Submitted (09-AUG-1990) on tape to the EMBL Data Library by: RL Wolstenholme D.R., Biology Department, University of Utah, Salt RL Lake City, UT 84112, USA. RN [2] RA Okimoto R., MacFarlane J.L., Wolstenholme D.R.; RT "Evidence for the frequent use of TTG as the translation RT initiation codon of mitochondrial protein genes in the nematodes, RT Ascaris suum and Caenorhabditis elegans"; RL Nucleic Acids Res. 18:6113-6118(1990). RN [3] RA Okimoto R., MacFarlane J.L., Clary D.O., Wolstenholme D.R.; RT "The mitochondrial genomes of two nematodes, Caenorhabditis RT elegans and Ascaris suum"; RL Unpublished. CC See also X54252 for C. elegans mitochondrial genome. FT rRNA 901..1601 FT /note="s-rRNA" FT rRNA 11346..12305 FT /note="l-rRNA" SQ Sequence 14284 BP; 3168 A; 1095 C; 2909 G; 7111 T; 1 other; BASE COUNT 224 a 64 c 133 g 280 t 4512 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -------]-- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------u uuaaguuuua cuua-uaagg auuuaAAAUU 661 (UGA-)U-UA U|GGUUU-ua ggu-aguguu ---AUAAUGA |UG-uuaucu ---------- 721 ---------- -----|---- -------(gu uuu------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- ---------- ---------- -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---(----)- -|-------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------- -----)---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---|ggau-- ----ucauug aaugggcaa( ---------- uaauuuu-)u uacccug--| 1561 -|-GCA--U- UU-UGUc--- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GUUUG|-uau 1921 -aaa-U---U UUGU-U(-CC AGA-auaaUC -GGC-UA)-G ACUUUA|--- -UAA-ACuug 1981 aacuc-uaau u--------- gauguu|agu uuaggguuuu -guaaau|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ---------- ---------- -----|auau cuuguu-uuu ---u-AGG(G 2341 UGAAA)UCG- g-------ga auuu------ --u------- ---------u -auu(--gau 2401 -)aa|ug--- --cucuaa-- ---------- ---------- -------ucu uuAAG-AUUU 2461 G-GU----GA AUGAAUCAG( AUUAG-UAC) CUGA-UUAA| --A-C-AAA- aau------- 2521 ---------- |--|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(-uaa)- ---------- 2701 ---|--a|ag a-gCAG-GAG UA-AAGU(-- --ugu--)AU UU---AAACU GUAAGAAUAU 2761 UG|GCAGGU- UUUUAa---a uuAUCUUU|G GAGGUUGA-G |UAGUA--AU UG(AGAACCC 2821 U--------- ----)CAUU- --aaca-aCU UUUACu-gua ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------GGC GCA-UG|UA- 3121 |UG|-AU--C |G------UU U-a---u-uu uau--ucu(u --aa-)gga- ------uug- 3181 uaa------- u-uuuagauu aauu------ ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- -------uau (-uuucu)gu a--------- 3781 ---------- -----A-AAA U-AGAUAAAU A|CUUG|GUG UAU------- ---------G 3841 U-A-AA-AGa uu-UAA--UU -UGACCUACA AU--au---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g cu---)---- ---------- ---------- ----aucuu- 4021 ---------- ------GUGG --AUACU-UU U-U(------ ---------- ---------- 4081 ---------- ---------- -uagu----) A-GA-A--GG -U--UGAAA- -AUGUAAAAG 4141 A-C--AGUAA G-UUUUUU(- -uuua-u--- --)AUAAAGC U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GUU--U-AU 4261 UUAAAA-AC- GGUACAAA-U -CAUCCAUCA A-UUG--CCU ---------- ---------- 4321 ---------- ---------- ---------- ---------- -(uca---)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- -GGG-GAG-U AAGUUGUAGU AAAGUAGA-G UUA-GG(GGA 4621 -A)CCU-GG- CUCUAGUAAU UA-------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.elega 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Caenorhabditis elegans (nematode). ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Caenorhabditis elegans (nematode). ORGANISM Mitochondrion Caenorhabditis elegans (nematode). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X54252 ID MTCE standard; DNA; ORG; 13794 BP. AC X54252; DT 30-SEP-1991 (Rel. 29, Last updated, Version 1) DT 30-SEP-1991 (Rel. 29, Created) DE C. elegans complete mitochondrial genome KW ATPase 6; COI gene; COII gene; COIII gene; cytb gene; KW large ribosomal RNA; ND1 gene; ND2 gene; ND3 gene; ND4 gene; KW ND4L gene; ND5 gene; ND6 gene; small ribosomal RNA; tRNA-Ala; KW tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-Gln; tRNA-Glu; KW tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu; tRNA-Lys; tRNA-Met; KW tRNA-Phe; tRNA-Pro; tRNA-Ser; tRNA-Thr; tRNA-Trp; tRNA-Tyr; KW tRNA-Val. OS Caenorhabditis elegans (nematode) OC Eukaryota; Animalia; Metazoa; Nemata; Secernentea; Spiruria; OC Spirurida; Spirurina; Filarioidea; Filariidae. OG Mitochondrion RN [1] RP 1-13794 RA Wolstenholme D.R.; RL Wolstenholme D.R., Biology Department, University of Utah, Salt RL Lake City, UT 84112, USA. RA Okimoto R., MacFarlane J.L., Wolstenholme D.R.; RT "Evidence for the frequent use of TTG as the translation RT initiation codon of mitochondrial protein genes in the nematodes, RT Ascaris suum and Caenorhabditis elegans"; RL Nucleic Acids Res. 18:6113-6118(1990). CC See also X54253 for A. suum mitochondrial genome. SQ Sequence 13794 BP; 4335 A; 1225 C; 2055 G; 6179 T; 0 other; FT rRNA 898..1594 FT /note="s-rRNA" FT rRNA 10403..11355 FT /note="l-rRNA" BASE COUNT 250 a 68 c 115 g 264 t 4516 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- uaaaguuuu- cuuu-caggg aauuaAAAUU 661 (UGA-)U-CA U|GGUUU-aa gau-gauuua ---aaau-gg |ua-uuaucu ---------- 721 ---------- -----|---- -------(aa auu------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 --------|- ---------- ---------- -|-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---(----)- -|-------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(------- -----)---- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---|ugau-- ----uuacag aguaggcaa( ---------- uaaaaau-)u uaccuc---| 1561 -|--gg--c- aa-uuuauc- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GCUUG|-uaa 1921 -aau-A---C UUGU-U(-CC AGAauaa-UC -GGC-UA)-G ACUUGU|--- -UAAAGCuug 1981 uacuu-uaau u--------- gauguu|aau uaugaaauua -uuauau|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ---------- ---------- -----|uuuc uuuuag-auc ---u-AUG(G 2341 UAGAA)UUU- g-------ga uuua------ -ua------- ---------u -uag(-ugaa 2401 -)uu|u---- -----ucaua ---------- ---------- -------auu uuAAG-AUUU 2461 G-UU----GA ACAAAGCAG( AUUAG-UAC) CUGG-UUAG| --A-C-AAA- aau------- 2521 ---------- |--|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(-uaa)- ---------- 2701 ---|--a|ag a-gCAG-GAG UA-AAGU(-- --ugu--)AU UU---AAACU GAAAAGAUAU 2761 UG|GCAGACa UUCUAa---a uuAUCUUU|G GAGGCUGA-G |UAGUA--AC UG(AGAACCC 2821 U--------- ----)CAUU- --aacu-aCU UAAUUu-uuu ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------GAC UCG-UG|UA- 3121 |UG|-AU--C |G------UU U-a---u-uu uau--ucu(u --aa-)gga- ------uua- 3181 uaa------- ----uaaaaa auuuu----- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- -------uaa (-uuu-a)uu a--------- 3781 ---------- -------AAA U-AGAUAUAU A|CCCG|GUU UAU------- ---------G 3841 AUU-UA-AG- aa-acA--UU -UGGCCUACA AU--au---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u uu---)---- ---------- ---------- ----auauu- 4021 ---------- ------AUGG --AUUUU-AG U-U(------ ---------- ---------- 4081 ---------- ---------- uuaguu---) A-AC-U--AA -A--UGAAA- -UUGUAAAAG 4141 A-C--AGUAA A-AAAUUC(- -uuaa-u--- --)GUAUUUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GAU--U-AU 4261 CUAGAA-GU- GGUACAAA-U -CAUCCAUCA A-UUG--CCC ---------- ---------- 4321 ---------- ---------- ---------- ---------- -(aaa---)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- -GGG-GAG-U AAGUUGUAGU AAAGUAGA-U UUA-GG(GGA 4621 -A)CCU-GA- AUCUAGUAAU A--------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.O.volvu 5213 bp RNA RNA 01-JAN-1998 DEFINITION Mitochondrion Onchocerca volvulus.; . ACCESSION No information KEYWORDS . SOURCE Mitochondrion Onchocerca volvulus. ORGANISM Mitochondrion Onchocerca volvulus. REFERENCE 1 (bases 1 to 13747) AUTHORS Keddie,E.M. and Unnasch,T.R. TITLE Complete sequence of mitochondrial genome of Onchovcerca volvulus JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 13747) AUTHORS Keddie,E.M. and Unnasch,T.R. TITLE Direct Submission JOURNAL Submitted (18-JUL-1997) Geographic Medicine, University of Alabama at Birmingham, BBRB Box 7, Birmingham, AL 35294-2170, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF015193 GenBank Accession:AF015193 BASE COUNT 181 a 51 c 122 g 330 t 4529 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- -uuuuAAGUU 661 (UGA-)U-UU U|GGUUU--a ggu-uguauu ---aaga-ua |guauua-cu ---------- 721 ---------- -----|---- -------(ua uuu------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 -uu|ag-u-- ----uuacuu -a-gugugu( ---------- uaauuuuu)g uacacu---| 1561 -|-ggu--a- gu-uuuuu-- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GAUUG|-uuu 1921 -uau-U---A ACGU-U(-CC AGA-auaaUC -GGC-UA)-U GCGUUU|--- -UAA-UUuuu 1981 gacuc-uauu u--------- guugug|gug cuaugaguuu -uuaguu|-- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 ---------- ---------- ---------- ----u|guuu uuauauuguu ---u-uuu(g 2341 uaaaa)uau- u-------uu aauu------ --u------- ---------- -uuu(-uuuu 2401 -)ag|u---- ---uucuuau gg-------- ---------- -------uau caaaa-AUUU 2461 G-uu----UU UUGAACUGG( AUUAG-UAC) CCAG-GUAA| --U-C-aaa- auu------- 2521 ---------- |--|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---(-uaa)- ---------- 2701 ---|--u|aa u-uCGG-GAG UA-AAGU(-- --uuu--)AU UU---AAACC GAAAAAAUAU 2761 UG|ACUGAC- UUUAGa---u uuuUCUUU|G GAAUAUGU-G |auuug--CU GG(AGAGCCC 2821 U--------- ----)CUUU- --uuug-gUG AAUUUU-guu ---------- ---------- 2881 (--------- ---)------ ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------GGC ACA-UG|UA- 3121 |UG|-AU--U |G------UU U-a---g-uu uuu--auu-u --u---auu- ------uug- 3181 uaa------- u-gcuuuauu guu------- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- -------uug (-gca-u)ua a--------- 3781 ---------- -------AAA C-AGAUAUAU A|UUUG|GCU UAU------- ---------G 3841 A-A-UU-UA- ug-uuu--CA -UGUGUUACU AU--ua---- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-ug aau--)---- ---------- ---------- ----uuuuu- 4021 ---------- ------uUGG --AUUAG-UU U-U(------ ---------- ---------- 4081 ---------- ---------- -uuau----) U-UU-U--UU -U--UGAAA- -UUGGAAAAG 4141 A-A--AGUAA U-UUUUUC(- -uuaa-u--- --)GUUUUAA U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -uuu--aaua 4261 aAUAAG-GU- GGUACAAA-C -CAUCCGUCA A-UGG--CCU ---------- ---------- 4321 ---------- ---------- ---------- ---------- -(aaa---)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------- -GGG-GCG-U AAGUUGUAGU AUGGUAGA-A GUA-AG(GAA 4621 -A)CUU-GU- UUCUAUUUUU UGaagu---| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (6)-Cnidar 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.S.glauc 5213 bp RNA RNA 01-JAN-1999 DEFINITION Mitochondrion Sarcophyton glaucum.; . ACCESSION AF0648 3 KEYWORDS . SOURCE Mitochondrion Sarcophyton glaucum. ORGANISM Mitochondrion Sarcophyton glaucum. REFERENCE 1 (bases 1 to 11715) AUTHORS Beaton,M.J., Roger,A.J. and Cavalier-Smith,T. TITLE Sequence analysis of the mitochondrial genome of Sarcophyton glaucum: conserved gene order among octocorals JOURNAL J. Mol. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 11715) AUTHORS Beaton,M.J., Roger,A.J. and Cavalier-Smith,T. TITLE Direct Submission JOURNAL Submitted (12-MAY-1998) Botany, University of British Columbia, 3529-6270 University Blvd., Vancouver, B.C. V6T 1Z4, Canada STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF064823 BASE COUNT 298 a 192 c 244 g 287 t 4192 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ----cUCCUU 661 (UGA-)C-CU U|GGGGA-GU CUAUAAGGCA -AcGUG--UU |CU-uc--ua aUAC-A-UGC 721 -AAGgc---c c----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ------ug(a au-)aa---- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ------gg|g cCCUACUGGU GAGGAU--AA A|UGG-ag-- --a------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-uauc-- -----)---- 1261 ---------- ---------- -------u-- ----CGG-UU |--------g aCGUAUUA-- 1321 -GA--AUAGg cg-gg(auag ugg------- ---------- ---------- ------)ccc 1381 acCUG|---- GUCGA--AGA U|GCGUA-GU --|------- (aua---)-- -------GC| 1441 CACAcu-uuc ac(ugaaa-c aa-)ggggaa g|aca----( -uuu-)---- ugg----c-a 1501 GCA|GUA-GA GAAUCUUGUG C-AAUGGGU( ---------- ----AAAC)G CUUG-ACAC| 1561 A|-GGGUuU- CA-CAC---- ------ug-- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- AGGUC|uGUC 1921 -UAA-C---U AAGU-G(-CC AGCAGAC-GC -GGU-UA)-A ACUUAG|--- AGGC-CC--- 1981 AGUUU-UUAU UU----cgca uuaGGC|gu- uAAAGUAUGU -A-gug---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 -------aau uaugagaaua aaguaa--gg -----|cca- accucu-ugg u---aGCG(G 2341 UAAAA)UGUu ugaag----c aaga-gug-g aag------- ----uacgaa -ggu(-gaag 2401 -)ac|u---- ----ccuuac uccguucaug uuacauauu- cau-ga-aAU ACGAA-agcu 2461 u-gga---ua gCAAACAGG( AUUAGAUAC) CCUG-GUAG| --ucuuagc- -ccuaaacuu 2521 a--uaca-au |ag|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ----cuuugu uagca----- ---------- ---------- -aa(uaac)c u---u-auug 2701 u-a|--u|GC C-UGAA-UAC UAUAAUC(-- -GCAA--)GA UUG--AAACU CAAAaggc-U 2761 UG|GCUguu- cacuguu--u gaaUCAGA|G GAGCGUGU-A |AUUUAa-UA CG(AUGAUCC 2821 G--------- ----)CGUGU C-ACCUUACC UUUCCUUGAA ---------- ---------- 2881 (-agc---gg gu-)------ ------(--- --)------------ ---c---AGG CAU-UG|CA- 3121 |UG|-GC--C |G------uC gu-ca|g--g aua-|aca(a u-aaa)ugu- -----(-ua- 3181 u--)------ --ccuuaacc cua-u----- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----uaug- 3781 ------gauu -----a-aGU C-AGGUGU-u a|UGGU|CUU UAU------- ---------G 3841 G-A-AA-GG- CAuAU---UA -UGCGCUACA UU--cucc-- ---------- ---------- 3901 ----<----- ---------- --uauacaau auauac---- ---------- -aguaaauua 3961 ---------- ----->(--- -----)---- ---------- ---------- -gg-agg--- 4021 ---------- -------CGG --AGAUU-CU C--(------ ---------- ---------- 4081 ---------- ---------- UGAAAC---) --GG-A--AA -U-cUUAAG- -UAGGAUUU- 4141 GA-u-AGUAA U-CGGGAA(- guaga-gc-- --)GUUCCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- --uu-cuaac 4261 ccagug-uu- AGCACAAA-U -CGCCCGUCG U-CCC--CUU CA-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aguuaagga- 4381 uauga-gacg ccccgcgggg uuaucccuc- cuuu-ucg-- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GAAU-GGG-U AAGUCGUAAC AUAGUAAG-A GUA-AG(GGA 4621 -A)CUU-GU- UCUUG----- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.sen.1 5213 bp RNA RNA 10-JAN-1994 DEFINITION Mitochondrion Metridium senile. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Metridium senile. ORGANISM Mitochondrion Metridium senile. REFERENCE 1 (bases 1 to 11715) AUTHORS Pont-Kingdon G. A., Beagley, T., Okimoto, R., Wolstenholme, D. R. TITLE Mitochondrial DNA of the sea anemonye, Metridum senile... JOURNAL JME 39: 387-399 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: S75445 BASE COUNT 323 a 190 c 295 g 275 t 4130 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ----gUCCUU 661 (UGA-)u-uu u|GGGGA-au guagaaggca -A-GUGG-CC |CU-uu--ua aUAC-A-UGC 721 -UAGua---u g----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ----ucuauc 841 ugaugguc(a aaa)gaucua aggauagcu- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ------cg|u gCAGACAGGU Gaguaa--AU C|CGG-aa-- --uc-ca--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-aagugc -----)---- 1261 ---------- ---------- --ug--gg-- ----CCG-GA |--------g uCUUAUUA-- 1321 -GGUAGAAGg ug-gu(guaa aag------- ---------- ---------- ------)acc 1381 acCUU|---- GCUGA--AGA U|GGGUA-GC uu|------- (aguug-)-- -----gaGC| 1441 CACAcu-uuc ac(ugaaa-c aa-)ggggaa g|gcuc---( acaua)---g agg----c-a 1501 GCA|GUA-GA GAAUCUUGUG C-AAUGCAC( ---------- ----GAAA)G UAUG-ACAC| 1561 A|-GAGA-G- GA-CAC---a uuuaauug-- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- AGCCC|-GUC 1921 -AAA-U---U AAGU-G(-CC AGCCGAC-GC -GGU-UA)-G ACUUAA|--- -GGG-CU--- 1981 ggucu-uuau aa----guaa aaaGGC|guA AAGGAUGUGU -A-ggc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --caagaaau -uguccaaga agguaa--au -----|GGAA uuuuuc-ugg ----aGCG(G 2341 UAGAA)UGUg agg-a----u agaa-aauaG AAC------- ----accuaa -ggu(-uaaa 2401 -)ac|u---- ----auuuac c--acaaaau ag-------- gcu-ga-aAC AUGAA-Agug 2461 u-ggg---ga gCAAACAGG( AUUAGAGAC) CCUG-GUAG| --ucc-caca cugugaacuu 2521 u--gaag-au |--|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- -------gau 2641 gcuuagcaga cccgaaaggu aaa------- ---------- ---------- ------aucu 2701 u-c|--C|GC C-UGAG-UAG UACGAUC(-- -GCAA--)GA UUA--AAAUU CAAAaacu-U 2761 UG|GCUguu- cacuauu--u cgaUUAGA|G GAGCGUGU-A |GUUUAa-UU CG(AUGGUCC 2821 G--------- ----)CGUGU U-ACCUUACC CCAGCUUGAA ---------- ---------- 2881 (-ucu---au ga-)------ ------(--- --)----<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->-------- ---c---CGG UAU-UG|CA- 3121 |UG|-GC--C |G------uC gu-aa|g-uc cgu-|gug(u u-a--)agc- -----(-ua- 3181 g--)------ --aagggacc caa-uccggg c--------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----guuu- 3781 ------gccc gaagga-aGU C-AGGUCU-U A|UGAU|CCG AAU------- ---------G 3841 U-U-GG-GG- GA-UUU--UA -UGCGCUACA UU--uucu-- ---------- ---------- 3901 ----<----- ---------- --uauauaau gagagacuug aaagguaagc cucuaaagua 3961 ---------- ----->(--- -----)---- ---------- ---------- -ag-agu--- 4021 ---------- ------uCGG --AAGGU-CG c--(------ ---------- ---------- 4081 ---------- ---------- UGUAAa---) --aC-G--AC -U--GGAAG- -UUGGAUUU- 4141 AA-u-AGUAA U-CGGAAA(- guagg-gc-- --)GUUCCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- --uu--ggua 4261 caagug-uu- AGCACAAA-U -UGCCCGUCA C-CUU--UAC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aggaugguu- 4381 auucg-gacg ccuucggugg uuacgaau-- gccu-acg-- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGUA-AAG-C AAGUCGUAAC AUGGUGAG-G GAG-GG(GGA 4621 -A)CCC-UC- CCUUGnnnnn n~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.M.sen.2 5213 bp RNA RNA 02-MAR-1998 DEFINITION Mitochondrion Metridium senile.; . ACCESSION AF000023 KEYWORDS . SOURCE Mitochondrion Metridium senile. ORGANISM Mitochondrion Metridium senile. REFERENCE 1 (bases 1 to 17443) AUTHORS Beagley,C.T., Okimoto,R. and Wolstenholme,D.R. TITLE Direct Submission JOURNAL Submitted (16-APR-1997) Biology, University of Utah, 233 Biology, Salt Lake City, UT 84112, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF000023 BASE COUNT 323 a 189 c 295 g 275 t 4131 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ----gUCCUU 661 (UGA-)u-uu u|GGGGA-au guagaaggca -A-GUGG-CC |CU-uu--ua aUAC-A-UGC 721 -UAGua---u g----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ----ucuauc 841 ugaugguc(a aaa)gaucua aggauagcu- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ------cg|u gCAGACAGGU Gaguaa--AU C|CGG-aa-- --uc-ca--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- --(-aagugc -----)---- 1261 ---------- ---------- --ug--gg-- ----CCG-GA |--------g uCUUAUUA-- 1321 -GGUAGAAGg ug-gu(guaa aag------- ---------- ---------- ------)acc 1381 acCUU|---- GCUGA--AGA U|GGGUA-GC uu|------- (aguug-)-- -----gaGC| 1441 CACAcu-uuc ac(ugaaa-c aa-)ggggaa g|gcuc---( acaua)---g agg----c-a 1501 GCA|GUA-GA GAAUCUUGUG C-AAUGCAC( ---------- ----GAAA)G UAUG-ACAC| 1561 A|-GAGA-G- GA-CAC---a uuuaauug-- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- AGCCC|-GUC 1921 -AAA-U---U AAGU-G(-CC AGCCGAC-GC -GGU-UA)-G ACUUAA|--- -GGG-CU--- 1981 ggucu-uuau aa----guaa aaaGGC|guA AAGGAUGUGU -A-ggc---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------- 2281 --caagaaau -uguccaaga agguaa--au -----|GGAA uuuuuc-ugg ----aGCG(G 2341 UAGAA)UGUg agg-a----u agaa-aauag aaC------- ----accuaa -ggu(-uaaa 2401 -)ac|u---- ----auuuac c--acaaaau ag-------- gcu-ga-aAC AUGAA-Agug 2461 u-ggg---ga gCAAACAGG( AUUAGAGAC) CCUG-GUAG| --u-c-caca cugugaacuu 2521 u--gaag-au |--|------ ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- -------gau 2641 gcuuagcaga cccgaaaggu aaa------- ---------- ---------- ------aucu 2701 u-c|--C|GC C-UGAG-UAG UACGAUC(-- -GCAA--)GA UUA--AAAUU CAAAaacu-U 2761 UG|GCUguu- cacuauu--u cgaUUAGA|G GAGCGUGU-A |GUUUAa-UU CG(AUGGUCC 2821 G--------- ----)CGUGU U-ACCUUACC CCAGCUUGAA ---------- ---------- 2881 (-ucu---au ga-)------ ------(--- --)----<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->-------- ---c---CGG UAU-UG|CA- 3121 |UG|-GC--C |G------uC gu-aa|g-uc cgu-|gug(u u-a--)agc- -----(-ua- 3181 g--)------ --aagggacc caa-uccggg c--------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- -----guuu- 3781 ------gccc gaagga-aGU C-AGGUCU-U A|UGAU|CCG AAU------- ---------G 3841 U-U-GG-GG- GA-UUU--UA -UGCGCUACA UU--uucu-- ---------- ---------- 3901 ----<----- ---------- --uauauaau gagagacuug aaagguaagc cucuaaagua 3961 ---------- ----->(--- -----)---- ---------- ---------- -ag-agu--- 4021 ---------- ------uCGG --AAGGU-CG c--(------ ---------- ---------- 4081 ---------- ---------- UGUAAa---) --aC-G--AC -U--GGAAG- -UUGGAUUU- 4141 AA-u-AGUAA U-CGGAAA(- guagg-gc-- --)GUUCCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- --uu--ggua 4261 caagug-uu- AGCACAAA-U -UGCCCGUCA C-CUU--UAC CU-------- ---------- 4321 ---------- ---------- ---------- ---------- ---------< aggaugguu- 4381 auucg-gacg ccuucggugg uuacgaau-- gccu-acg-- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- ---------- 4561 ---------- ---------A GGUA-AAG-C AAGUCGUAAC AUGGUGAG-G GAG-GG(GGA 4621 -A)CCC-UC- CCUUG----- ---------| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS (3)-Rhodop 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.P.purpu 5213 bp RNA RNA 09-JAN-1997 DEFINITION Mitochondrion Porphyra purpurea. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Porphyra purpurea. ORGANISM Mitochondrion Porphyra purpurea. REFERENCE 1 (bases 1 to 17443) AUTHORS Burger,Lang,Gray JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF114794 LOCUS AF114794 36753 bp DNA circular PLN 06-JAN-1999 DEFINITION Porphyra purpurea mitochondrion, complete genome. ACCESSION AF114794 NID g4106927 KEYWORDS . SOURCE Porphyra purpurea. ORGANISM Mitochondrion Porphyra purpurea Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra. REFERENCE 1 (bases 1 to 36753) AUTHORS Burger,G., Saint-Louis,D., Gray,M.W. and Lang,B.F. TITLE Complete sequence of the mitochondrial DNA of the red alga, Porphyra purpurea. Inverted repeats, sequence polymorphisms, and cyanobacterial introns JOURNAL Unpublished REFERENCE 2 (bases 1 to 36753) AUTHORS Burger,G. TITLE Direct Submission JOURNAL Submitted (17-DEC-1998) Departement de Biochimie, Universite de Montreal, 2900 Boulevard Edouard-Montpetit, Montreal, Quebec H3T 1J4, Canada FEATURES Location/Qualifiers source 1..36753 /organism="Porphyra purpurea" /mitochondrion /db_xref="taxon:2787" rRNA 35005..36411 /gene="rns" /product="small subunit ribosomal RNA" gene 35005..36411 /gene="rns" BASE COUNT 13084 a 5926 c 6381 g 11362 t BASE COUNT 479 a 241 c 309 g 378 t 3806 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------UUU CAAAAGAGUU 661 (UGA-)U-CC U|GGCUC-CG AAUGAAUGCU -A-GUGG-UC |GG-CC--UA ACAC-A-UGC 721 -AAGUUG-AA Uacuu|uuug u------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------gcua u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -----aua|a 961 aaagu-uu|A GCGUACGGGU GAGUAA--UA C|AUA-GAAA --UU---UAU CUUAA-AUUa 1021 uggu------ -------(aa au--)----- ---------a ccuuaaa--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- aaauuaauua uu-------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GGUU UAAGAAAAG- --UCUAC-GC |--------- -AGGAUUA-- 1321 -GGUAGUUGG UAauu(UAAA AGA------- ---------- ---------- ------)UAU 1381 AUCAA|---- GCCUA--CGA U|CCUUA-AU UG|---GUCU (UUGA--)GG AUGACCAGU| 1441 CACACU-GGA AC(GGAAA-U AA-)GGUCCA G|Acucu--( uua--)--ag agG----C-A 1501 GCA|GUG-AG GAAUCUUAGG C-AAUGAGC( ---------- ----GAAA)G CUUGA-CCU| 1561 A|-GCCA-G- GC-CAC---- -AUGUGCGAC --GAAA-AC- (-------ua uauuag---- 1621 --------)- GUUGUA-AAC -CAC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -------uuu guaaaauaca auaaaaa--- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- --------aa gauuauauuu uacaaucaaa GCUCC|-GGC 1921 -UAA-U---U UCGU-G(-CC AGCAGCC-GC -GGU-AA)-A ACGGGA|--- -GGA-GCA-- 1981 AGUAU-UAUU CAA--AUUGA CUGGGC|GUA AAGGGUGCGU -A-GGUU|GU GCAUCA--AG 2041 |UAGua--aa aaaau----- guuaaau(-- --uuuau)gu uuauc----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------aa auauuacuaa ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U AAUACAC-UA 2281 G-----AGCG -UA-GUAA-A -AGAUU--AU -----|GGAA CUUCGA-AAG ---UAGCG(A 2341 UAAAA)UGC- GAU---AAUA UUCA-AAA-G AAC------- ----UCCAAA -AGU(-GAAA 2401 -)AC|A---- ----AUAAUC U-GGACU-AC AG---CUGAC ACU--GAGGC ACGAA-AGCG 2461 U-AGG---UA UCAAAAGGG( AUUAGAUAC) CCCU-GUAG| -UCUA-CGC- CCUCAA-CGA 2521 U--GAGU-GU |UU|GUCAUU G---aa(-ua cuu------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)uua--- CAGUGAC-GA AGU(UAAG)G CAUUAAACAC 2701 U-C|--C|GC C-UGGG-GAU UACGGUC(-- -GCAA--)GA UUA--AAACU CAAAGGAA-U 2761 UG|ACGGGA- ACCCUC---A CAAGCGGU|G GAGCAUGU-G |GUUUAA-AU CG(AAACAAC 2821 G--------- ----)CGCAA A-ACCUUACC AAUUUUUGUA ugucac---- ---------- 2881 (---u---ua gu-)------ ------(--- --)----<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->----guca c--a----GG UGU-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-UC CGU-|GCC(G --UGA)GGCG UUUGG(UUA- 3181 AUU)CCA-G- CAAACGGACG AAA-CUUUUa -----uguaa ugua------ -----(uuua 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|----ua cau-uauaGA -CUGCUU-GG (AAUA-U)CC UUG-AGGAAG 3781 -----GGA-A AAACGA-CGU C-AAGUCCGC A|UGAC|CCU AAU------- ---------A 3841 A-A-UU-GGG CU-ACuuuCA -UGUGCUACA AAguAAUAUU U-ACAACAAG AA---GCAA- 3901 AGGU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G CAA--)GCUG -GAGCAAAAU CUAU-AAAAA AUA-UUUUA- 4021 ---------- -----UUCGG --AUUAU-UC U-C(------ ---------- ---------- 4081 ---------- ---------- UGCAAC-UC) G-AG-A--AU -A--UGAAG- -CAGUAAUCG 4141 C-U--AGUAA U-CGUGAA(- UCAGAAUC-- --)GUCGCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAC--GUUC 4261 UUGGGU-UU- UGUACACA-C -CGCCCGUCA C-ACU--ACG GAA-AUUUAC UCU-ACUUGA 4321 Agacaaaaag u--------- ---------- ---------- -(gauaaa)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- gcuuuuuuuc 4561 -CAU--GGUA G-CGAAAGGA CUAG-AGU-G AAGUCGUAAC AAGGUAGC-C GUA-GG(GGA 4621 -A)CCU-GC- GGCUGGAAAA GUUUAACA-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.merol 5213 bp RNA RNA 08-JAN-1999 DEFINITION Mitochondrion Cyanidioschyzon merolae.; . ACCESSION D89861 KEYWORDS . SOURCE Mitochondrion Cyanidioschyzon merolae. ORGANISM Mitochondrion Cyanidioschyzon merolae. REFERENCE 1 (sites) AUTHORS Ohta,N., Sato,N. and Kuroiwa,T. TITLE complete nucleotide sequence Structure and organization of the mitochondrial genome of the unicellular red alga cyanidioschyzon merolae deduced from the JOURNAL Nucleic Acids Res. 26 (22), 5190-5298 (1998) STANDARD No information REFERENCE 2 (bases 1 to 32211) AUTHORS Ohta,N. TITLE Direct Submission JOURNAL Submitted (12-DEC-1996) to the DDBJ/EMBL/GenBank databases. Niji Ohta, Waseda University, School of Human Science; 2-579-15 Mikajima, Tokorozawa, Saitama 359, Japan (E-mail: niji@human. waseda.ac.jp, Tel:0429-49-8111, Fax:0429-48-4314) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: D89861 On Jan 7, 1999 this sequence version replaced gi:3927864. Sequence updated (25-Dec-1998). BASE COUNT 520 a 222 c 334 g 465 t 3672 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- --uugacaaa auucauagaa auuaucuuua uuGAUGAGUU 661 (UGA-)U-CC U|GGCUC-AG AAUGAACGCU -A-GUGG-UU |UG-UUu-UA AGAC-A-UGC 721 -AAGUCg-aa cgaau|uau- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------auaa a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- -------a|u 961 aguuc-gu|G GCGAACGGGU GAGUAA--CA C|AUA-AAAA --UU---UUC CCAAC-UGuc 1021 cagguaaauc cuggau-(aa auaa)----- -------aca uauuaaagau uaauc----- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCAG UUGGAUAAG- --UUUAU-GU |--------- -AGGAUUA-- 1321 -GAUAGUUGG UA-ag(auaa aag------- ---------- ---------- ------)aUU 1381 ACCAA|---- GUCUA--UGA U|CCUUA-GC UG|---GUCU (GAGA--)GG AUGGUCAGC| 1441 CACACU-GGG AC(UGAGA-U AA-)GGCCCA G|Acucc--( uuca-)--gg agG----C-A 1501 GCA|GUC-GA GAAUAUUAGG C-AAUGAGC( ---------- ----GAAA)G CUUGA-CCU| 1561 A|-GCAA-A- AC-CAC---- -GUGUGUGAA --GACG-GC- (--------c u-uuag---- 1621 --------)- GUUGUA-AAG -CAC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -------uuu uguu-ggaga uaau------ -(--gaug-- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- -auaguau-c caaagaaaaa GUCCU|-GGC 1921 -AAA-U---U CCGU-G(-CC AGCAGCC-G- -GGU-AA)-U ACGGGA|--- -AGG-GCA-- 1981 AGCGU-UAUU CGG--aAUUA CUGGGU|GUA AAGGGUGCGU -A-GAUG|gu uaaaaa--ua 2041 -acuaa--aa uauaa---aa aguaaug(-- --cccaa)ca uuauu----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------aa gcguuuuagu ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------au-u uuuuauc-uu 2281 g-----AGUU -UA-AAAGA- -CGAUU--AU -----|AGAA UUUUAG-GUG ---UAGCA(G 2341 UAAAA)UGC- GUA---AAUA UCUA-AAG-G AAU------- ----UCUCUC -UGU(-GAAA 2401 -)AC|G---- ----uUAAUC --GAGUU-AU AA---CUGAC AUU--GAGGC ACGAA-AGCG 2461 U-GGG---GA GCAAAAAGG( AUUAGAGAC) CCUU-GUAG| -UCCA-CGC- CGUAAA-CGA 2521 U--GAAU-GU |UA|gguccu gguuuu(agc auua------ ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)aaa-au caggguc-GA AGU(UAAC)G CGUUUAACAU 2701 U-C|--C|AC C-UGGG-AAG UACUAUC(-- -GCAA--)GG UAG--AAACU CAAAGGAA-U 2761 UG|ACGGGA- ACUUGC---A CAAGCGGU|G GAGCACGU-A |ACUUAA-UU CG(AUGUCAC 2821 A--------- ----)CGAAA A-AUCUUACC AAUUCuuguc auuuu-gau- ---------- 2881 (--------- ---)------ ------(--- --)------aucaaa a--c---AGG UGC-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-CC CGU-|GCU(G --UGA)AGUG UUUGG(UUC- 3181 AUU)CCA-A- UAAACGGGCG CAA-CUCUUa -----uaacu uauu------ --auu(uuaa 3241 --)--- ---|----ga uaa-guuaAA -CUGUUA-AC (GAUA-U)GU UAA-AGGAAG 3781 -----GUG-A GAAUGA-CGU C-AAGUCCUC A|UGGC|CCU UAU------- ---------G 3841 A-A-UU-GGG CU-GUA--UA -CGUGCUACA AU--GGCUUA Uuacaa-aaa au---uucu- 3901 auua<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--u gug--)aaua -auagaaauu uuau-AAAAU AAG-UCUCAg 4021 ---------- -----UUCGG --AUUAU-UC U-U(------ ---------- ---------- 4081 ---------- ---------- UGUAAC---) A-AG-A--AU -A-aGAAAG- -UUGGAAUCG 4141 C-U--AGUAA U-CGCAAA(- UAAGAAU--- --)GUUGCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAA--GUAC 4261 CCAAGU-UU- UGUACACA-C -UGCCCGUCA C-ACU--AUG GAA-AUUAAU CUU-GUCGGA 4321 Agauaaaaua aauacuaaag uuaacuuuaa aauaauuuga u(uaaaau)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->-aauaau uuuuuaaagu uaauuuuagu auuuauuuu- 4561 auugaugaca ggaUUAAGGA CUGG-AGU-G AAGUCGUAAC AAGGUAUC-C GUA-GG(GGA 4621 -A)CCU-GU- GUCUGGAUUA UUUGAAGU-| uuuuauugu- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.C.crisp 5213 bp RNA RNA 11-JAN-191 DEFINITION Chondrus crispus. ACCESSION No information KEYWORDS No information. SOURCE Chondrus crispus. ORGANISM Chondrus crispus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z30950, Z47547 LOCUS CCMTUOS4L 3235 bp DNA PLN 15-DEC-1994 DEFINITION C.crispus mitochondrial gene for small subunit ribosomal RNA, NADH- ubiquinone oxidoreductase subunit 4L and large subunit ribosomal RNA. ACCESSION Z30950 KEYWORDS large subunit ribosomal RNA; NADH-ubiquinone oxidoreductase subunit 4L; small subunit ribosomal RNA. SOURCE carragheen. ORGANISM Chondrus crispus Eukaryota; Plantae; Thallobionta; Rhodophyta; Rhodophyceae; Florideophycideae; Gigartinales; Gigartinaceae. REFERENCE 1 (bases 34 to 1410) AUTHORS Leblanc,C., Loiseaux-de Goer,S., Kloareg,B. and Boyen,C. TITLE DNA sequence, structure and phylogenetic relationship of the mitochondrial small subunit rRNA from the red alga Chondrus Crispus JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 3235) AUTHORS Leblanc,C. TITLE Direct Submission JOURNAL Submitted (14-MAR-1994) to the EMBL/GenBank/DDBJ databases. Catherine Leblanc, CNRS, Centre D'etudes D'Oceanologie et de Biologie Marine, Places Georges Teissier, Roscoff, 29 682 CEDEX, FRANCE STANDARD full automatic COMMENT NCBI gi: 602494 FEATURES Location/Qualifiers source 1..3235 /organism="Chondrus crispus" /clone="E1" /tissue_type="apices" /cell_type="protoplasts" rRNA 34..1409 /gene="SSU rRNA" /product="small subunit ribosomal RNA" CDS 1447..1752 /gene="nad4L" /EC_number="1.6.5.3" /note="modified genetic code; NCBI gi: 602495" /codon_start=1 /codon=(seq:"tga",aa:Trp) /product="NADH-ubiquinone oxidoreductase subunit 4L" /translation="MFQQLNCTNISSLLFLVSLLGIFLNQKNILVMLMSLEMMFLSIS FNLIFSSIRLDDIIGQIFSLLILTVAAAESSIGLAILVIYYRIRSTITVELMNLMKG" rRNA 1763..>3235 /gene="LSU rRNA" /product="large subunit ribosomal RNA" BASE COUNT 1238 a 403 c 553 g 1041 t ORIGIN BASE COUNT 500 a 184 c 269 g 423 t 3837 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ----auauaa uaaaaGAGUU 661 (UGA-)U-CC U|GGCUC-AG AAUGAACGCU -A-GUGG-UU |AG-CU--UA ACAC-A-UGC 721 -AAGCUa-aa auuuu|uua- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------uuag u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------u auaaaauu|- 961 -agu----|A GCGAACGGGU GAGUAA--UG C|AUA-AAAA --UU---AAC CUUAA-AAAA 1021 uuguu----- -aaa---(ua ca--)---uu u-------aa -aauuaaauu ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GUUU UAAGAAAAG- --UUUAU-GU |--------- -AAGAUUA-- 1321 -AGUUGUUGG UA-AU(UUAA UAG------- ---------- ---------- ------)AGU 1381 ACCAA|---- GCUUA--CGA U|CUUUA-GU UG|---GUCU (AUGA--)GG AUGAACAGC| 1441 CACAUU-GGA AC(UGAGA-U AC-)GGUCCA A|acuua--( auua-)--aa agG----C-A 1501 GCA|GUG-AG GAAUAUUGGG C-AAUGGGU( ---------- ----GAAA)G CUUGA-CCC| 1561 A|-GCUA-A- AC-CAC---- -AAGUGUGAU --Gaaa-gu- (--------- aaaau----- 1621 --------)- acuuuA-AAA -CAC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -----uuuu- uuaaaauaaa u--------- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- --aaugauuu uaauaaaaua GUCCU|-GGC 1921 -UAA-U---U UCGU-G(-CC AGCAGCC-GC -GGU-AA)-A ACGGGA|--- -AGG-GCA-- 1981 AGCGU-UAUU CGG--AUUAA UUGGGC|GUA AAGAAUACGU -A-AGUU|GA AAAUcc-aau 2041 |uuuaa--ga uaaau----u uuaaag-(-- -uuuau-)-u uuuaa----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------uu aauuuaaaaa ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------au|u aAUUUUC-UA 2281 G-----AGuu -ua-aagaga -AGAUU--AU -----|AGAA UUUUAA-GUG ---UAACG(G 2341 UAAAA)UGU- UUU---GAUA CUUA-AAA-G AAU------- ----UUCAAC -AGC(-GAAA 2401 -)GC|A---- ----GUAAUC U-AAAAU-aa aa---CUGAC ACU--GAGGU AUUAA-AGUG 2461 U-GGG---UA GCGAAAGGG( AUUAGAUA-) CCCU-GUAG| -UCCA-CAC- CCU-GA-CGA 2521 U--AAGU-GU |UC|Auuuug ga----(-ga u--------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)-----u cagaaaU-GU AGC(UAAC)G UGUUAAACAC 2701 U-U|--C|GC C-UGGG-AAC UACGAUU(-- -GCAA--)AA UUA--AAACU CAAAGGAA-U 2761 UG|ACGGGG- ACUUAC---A CAAGCAGU|G GAGCAUGU-G |GUUUAA-AU CG(ACAAUCC 2821 G--------- ----)CGCAA A-AUCUUACC AAUUUUUGU- auaauua--- ---------- 2881 (--ua---au ---)------ ---------- -------<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->--u-aauu a--c---AGG UGU-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-UC CGU-|GCU(G --UGA)AGCG UUUGG(UUC- 3181 AUU)CCA-AU A-AACGGACG AAA-CUCUUA -----uauau u--------- -----(uuug 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ -aa-uauaaa -cugcua-aa (gaua-u)cu ugg-AGGAAG 3781 -----GUA-A GAAUGA-CGU C-AAGUCCUC A|UGAC|CCU AAU------- ---------A 3841 A-A-UU-GGG CU-ACUuuCA -UGUGCUACA AU--AAUUUU U-ucaa-aaa gu--agcaa- 3901 aaac<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g uga--)guuu uagcaaaccu uu-U-AAACA AAA-UUAUA- 4021 ---------- -----UUCGG --AUUAU-UU U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAu-uc) G-AA-A--AU -A--UGAAG- -UUGGAAUUG 4141 C-U--AGUAA U-CGUAAA(- UUAGA-AU-- --)GUUACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUU--GUUC 4261 UUAAGU-CU- UGUACACA-C -CGCCCGUCA C-GCU--AUG GAa-auucuu uuugcuugaa 4321 aaaugu---- ---------- ---------- ---------- -(uua---)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---------- -------aca 4561 auuuuauagu aaaagaaaaa CUGG-AGU-G AAGUCGUAAC AAGGUAGC-C GUA-GG(GGA 4621 -A)CCU-GC- GGCUGGAAAA uaauuaaa-| uauuu~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (3)-Viridi 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.P.wicke 5213 bp RNA RNA 11-JAN-191 DEFINITION Prototheca wickerhamii. ACCESSION No information KEYWORDS No information. SOURCE Prototheca wickerhamii. ORGANISM Prototheca wickerhamii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X15435 ID MIPW18SR standard; DNA; ORG; 1802 BP. XX AC X15435; XX DT 25-MAY-1990 (RT correction) DT 22-JAN-1990 (feature table and sequence update) DT 09-JUN-1989 (annotation) XX DE Prototheca wickerhamii mitochondrial rrn18 gene for 18S small DE subunit DE ribosomal RNA (SSUrRNA) XX KW 18S ribosomal RNA; ribosomal RNA; small subunit ribosomal RNA. XX OS Mitochondrion Prototheca wickerhamii OC Mitochondria; Planta; Phycophyta; Chlorophyceae; Chlorococcales. XX RN [1] (bases 1-1802) RA Wolff G., Kueck U.; RT ; RL Submitted (29-MAY-1989) on tape to the EMBL Data Library by: RL Wolff G., Kueck U., Allgemeine Botanik, Ruhr-Universitaet Bochum, RL Universitaetsstrasse 150, D-4630 Bochum, F R G. XX RN [2] (bases 1-1802) RA Wolff G., Kueck U.; RT "The structural analysis of the mitochondrial SSUrRNA implies a RT close phylogenetic relationship between mitochondria from plants RT and from the heterotrophic alga Prototheca wickerhamii"; RL Curr. Genet. 17:347-351(1990). XX CC *source: strain=263-11; XX FH Key From To Description FH FT RRNA 70 1749 18S ribosomal RNA XX SQ Sequence 1802 BP; 604 A; 273 C; 390 G; 535 T; 0 other; BASE COUNT 542 a 267 c 379 g 492 t 3533 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ------aauu auauuGAGUU 661 (UGA-)U-CC U|GGCUC-AG AAUGAACGCU -A-GCCG-UA |GG-CU--UA ACAC-A-UGC 721 -AAGUUG-UA CGUU-|-uuu uau----(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------aaa u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- --auagaa|A 961 A---A-GU|A GCGAACGGGU GAGUAA--CG C|GUG-AGAA --UC---UGC CUCUU-AAac 1021 ugcgg-aa-- uaac---(au ua-c)---gu ua--gaa-uc guggAUA--- -aguauuuua 1081 uguuauauuu auauaaaaua aagua----- ---------- ---------- ---------- 1141 ---------u aaagaau--- ---(aau-)- ----auuc-- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GUUA AGAGAUGAG- --CUUGC-GU |--------- -AAGAUUA-- 1321 -GGUAGUUGG UA-AG(GUAA AGG------- ---------- ---------- ------)CUU 1381 ACCAA|---- GCCAA--AGA U|CUUUA-GC UG|---GUUU (GAGA--)GA AUGAUCAGC| 1441 CACAUU-GGG AC(UGAGA-C AC-)GGCCCA A|AUACU--( UUAG-)--AG UAG----C-A 1501 GCA|GUG-GG GAAUAUUGGA C-AAUGGGC( ---------- ----GCAA)G CCUGA-UCC| 1561 A|-GCUA-U- AC-GGC---- -AUGAGUGUA --GAAG-ACU (--------g uauu------ 1621 --------)G GUUGUA-AAG -CUC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -----UUCGG UGAUAu---- ---auuuuua gauuauuua- --uaauuu-- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---uaaagag caga-gauua uGACAACGUA UCAUCAAAAA GUCCC|-GGC 1921 -UAA-U---C UCGU-G(-CC AGCAGCC-GC -GGU-AA)-U ACGAGA|--- -GGG-GCG-- 1981 AGCGU-UAUU CGG--AAUGA UUGGGC|GUA AAGCGUGCGU -A-GAUU|GU Uagaau--gg 2041 -auuucua-U AUAAA----A AUCAAGG(-- --CAACA)CC UUGAU----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------AG AUA-gaaaag cauuaguuuu auaaaaauua 2221 auaauuaaua gauguaauuu auaauaauaa guuauauuua uguuuucc|a uccaAAC-uU 2281 G-----AGUA -UU-UAUU-A -GGAGA--GU -----|AGAA UUCCUG-GAG ---UAGAG(G 2341 UAAAA)UUU- GUU---GAUC UCAG-GAG-G AAU------- ----ACCUAA -AGC(-GAAA 2401 -)GC|A---- ----GCUCUC U-AGUAA-AA CA---CUGAC AUU--GAGGC ACGAA-AGCG 2461 U-GGG---UA GCGAAAAGG( AUUAGAUAC) CCUU-GUAG| -UCCA-CGC- CGUCAA-CUA 2521 U--GAUC-UU |UU|UCUAUU UUCCCU(ugc aag------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)GGG-GG AAGUGGA-GU AGC(UAAC)G CGUUAAAAGA 2701 U-C|--C|GC C-UGAG-GAG UACGGUC(-- -GCAA--)GA UUA--AAACU CAAAGGAA-U 2761 AG|ACGGGG- ACCCGC---A CAAGUGGU|G GAAUAUGC-G |GUUUAA-UU CG(AAACAAC 2821 G--------- ----)CGCAA A-ACCUUACC AGUCCUUGAU AUGACACuu- --auagu--- 2881 (--ua---aa au-)---guu a-ucgu(uuu au)acuu<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->UGU-GU-U A--C---AGG UGU-UG|CA- 3121 |UG|-GC--U |G------UC GU-CG|G-UU CGU-|GCC(G --UAA)GGCG UUGGA(UUA- 3181 AUU)UCU-U- U-AACGAACG AAA-CCCCUG -----UUAUC AAUUGCUAAG AU---(---- 3241 --)--- AUC|AGAACU UUG-AUAUUA -CUGCCA-GU (GAUA-A)AC UGG-AGGAAG 3781 -----GAA-G GGAUUA-CGU C-AAGUCUUC A|UGAC|CCU CAU------- ---------G 3841 G-G-CU-GGG CU-ACA--CG -UGUAUUACA AU--GGCGAA U-ACAA-AAA GA--UGCAA- 3901 UGAU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G AGA--)AUCG -GAGCAAAUC UA-U-AAAAU UCGuCU-CAG 4021 ---------- -----UACAG --AUUGU-UU U-C(------ ---------- ---------- 4081 ---------- ---------- UGCAAu-uc) G-AA-A--AC -A--UCAAG- -AAGGAAUCA 4141 C-U--AGUAA U-CGUGGA(- UCAGC-AC-- --)GCCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UCA--GUAC 4261 UCGGGU-CU- UGUACUCC-C -CGCCCGUCA C-ACU--CUG GGA-AUCGAG UAG-AUUgua 4321 agucuguauu ucacuu-uuu uucuauucu- uuagaaau-- -(------)< aauaauaag- 4381 uucug-auga ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->--auuua uuaaauau-- agaaauuuag aaaauauacc 4561 -cag--AAUU UAUUUGGUAA CUGG-AGU-G AAGUCGUAAC AAGGUAAC-C GUA-GG(GGA 4621 -A)CCU-GC- GGUUGGAUUA CUUCUUUU-| uuuac~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.eugam 5213 bp RNA RNA 11-JAN-191 DEFINITION Chlamydomonas eugametos. ACCESSION No information KEYWORDS No information. SOURCE Chlamydomonas eugametos. ORGANISM Chlamydomonas eugametos. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: L28929 L28930 L28931 BASE COUNT 436 a 195 c 269 g 352 t 3961 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- aaaugaaaaa guaauGGGUU 661 (UGA-)U-AG U|GGCUC-UG CAAGAACGCU -U-UAUU-AU |GG-gaagUA AUAC-A-UGC 721 -GAGUG---A U----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)---auaga 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- --------|- 961 ------GU|A GCGUACGGGU GAGUAGauUA U|GCG-AGu- --uu**---- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- --(aaauaua ccaauaguaa cuuaguauua uaagaauuau 1141 u)-------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ----gggaa- --CUCGC-AU |--------- -UGGAUUA-- 1321 -GAUAGAUGG GA-A-(ugau gaauguauau uau------a gc-------- ------)-UU 1381 CCCAU|---- GUCua----A A|ACAUA-GU UU|---AAUU (GAUA--)GA UUAUUAAAU| 1441 CACAAU-GGC AC(UGAAA-A AA-)GGGCCA U|ACAAU--( AAAU-)--AU UGU----C-A 1501 GCA|GUA-GA GAAUAUUGGA C-AAUGUAA( ---------- ----AAAC)A UAUGA-UCC| 1561 A|-GAGC-A- UA-AUA---- -uua------ ---------- (--------- ---------- 1621 --------)- ---------- ----|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- GUCCU|-GGC 1921 -AAA-U---U CUGU-G(-CC AGCAGCC-GC -GGU+AA)-G ACAGAU|--- -AGG-ACA-- 1981 AGUGU-AUUG CAU--AAUGA UUGGGU|AUU --GCGUGUG- -AAAGCA|-- ---------- 2041 |--------- ---------- -------(-- -------)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ------u-ga 2281 c----uuaua -aa-gaa--a -aagaa--ua -----|GGAA UUCUCC-AUG ---UAUUG(G 2341 UAAAA)UAA- GCA---AAUA UGGA-UGAGG AAC------- ----GCCAAA -GGC(-AUAA 2401 -)GC|A---- ----uauuuu g--aaaa-uu ua---uauaA GCU--GUAAC ACGGA-AGUC 2461 C-GAG---UA GCAAAAAGG( AUUAGAGAC) CCUC-GUAG| -UUCG-GAC- CGUCAA-uu- 2521 ---GCCA-UU |u-|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- ---(uaua)- -----uAAUG 2701 G-U|--C|AC C-UGAU-GA- CACGGCG(-- -GCAA--)CG CUA-uUAAGU CAAAGUAU-U 2761 AG|ACGGAG- AUCAAU---A AAUGCGGU|G GAGCAUGU-G |GUUUAA-UG CG(ACGAUCC 2821 C--------- ----)CGCAA A-ACCUUACC ACUUUUUAAC AUuuuaaa** ---------- 2881 ---------- ---------- ---------- -------<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- --*----aaa ->-------- -------GGG CAU-UG|CA- 3121 |UG|-GC--U |Gaucaacug uu-uu|---- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- -----(---- 3241 --)--- ---|------ ---------- ---------- (------)-- ---------- 3781 ---------- ----uu-aca C-AAGUCCUC A|UGGU|CCU UAU------- ---------A 3841 G-A-GU-GGG CC-ACA--CA -UUUGCUACA AU--GGAUGC U--------- ---------- 3901 ----<----- ---------- ---------- ---------- ----cggucg ucgccgcucg 3961 ccagcgaacc uaaaa>(--- -----)---- ---------- --------AU CAU-UCGAAG 4021 ---------- -----UCCAG --AUUAGAUA U-C(------ ---------- ---------- 4081 ---------- ---------- UGAAAc-c-) G-GU-A--CU -A--UUAAG- -UAGGAAUCG 4141 C-G--AGUAA U-CGAAAA(- UCAGACAA-- --)GUUUCGG U-GAAguuaa aagauauugu 4201 agacauugac uauuucagau ccugaaauag ucguggcaua cauaucuuca uuau--uuua 4261 gUUGAU-CU- AGUACUCA-C -UGCCCGUCA A-GUA--CUG Aaa-gaaauu uugaugugaa 4321 aauacauaau uauc------ ---------- ---------- -(AUAUA-)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- ---gauacac aauguauaua 4561 -uaa--cuuu aacguuuuaa UUGG-UAU-U AAGUCGUAAC AAGGUGAC-A CUA-GG(GGA 4621 -A)CCU-GG- UGUCGAGAUA GAAAA----| aaaaacauu~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.reinh 5213 bp RNA RNA ~?~???? DEFINITION Chlamydomonas reinhardtii mt. ACCESSION No information KEYWORDS No information. SOURCE Chlamydomonas reinhardtii mt. ORGANISM Chlamydomonas reinhardtii mt. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X54860 Chlamydomonas reinhardtii mt SSU rRNA (cre m ssu) Boer PH, Gray MW (1988) Scrambled ribosomal RNA gene pieces in Chlamydomonas reinhardtii mitochondrial DNA. Cell 55:399-411 BASE COUNT 343 a 252 c 310 g 295 t 4013 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------**a aauuaGAGUU 661 (UGG-)U-GC U|GGCUC-AG CUUUCAUGCG cC-GAGC-GG |UG-GU--UU AUAC-A-UGC 721 -GAGCU---U -----|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)---aaaag 841 auuaaggcca cgagugcgua auacgcgagu uuaaauuuau uauacaa**- ---------- 901 ---------- ---------- ---------- ---------- ---------- --------|- 961 ----*-*A|A GUUGCUAGGU Gaccca---A U|ACG-GG-- ---------- ---------- 1021 ---------- ---------- ---------- ---------- -------(ca ucgggcaaaa 1081 )--------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- --CUCGC-GU |--------- -AGGAUUA-- 1321 -gcgAGcUGG GU-Cg(cgac gccaauacag ---------- ---------- ------)CGG 1381 CCCAu|---- ggc----UUA U|CCUUA-GC CU|---gucu (uaacg-)gu ac--uAGGC| 1441 CACGGU-GGC AC(UGAAA-A G--)GGGCCA C|GGUUC--( UUAU-)--GA ACC----C-A 1501 GCA|GUG-UU GAAUUUUGGA C-AAUCGCU( ---------- ---UGAAC)G GCGGA-UCC| 1561 A|-GAUG-C- UG-CUU---- -acaaa**-- ---------- (--------- ---------- 1621 --------)- ---------- ----|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- -------**a uuguuuguga ACACC|-CCC 1921 -CAA-G---C ACGU-G(-CC AGAAGGG-UC -GGU-AA)-A ACGUGC|--- -GGU-GUC-- 1981 AGUAU-AAAG CGU--CUUGA CUAGGC|AGG CAGCGCGUCU ---GAGC|-- ---------- 2041 |--------- ---------- -------(-- -------)-- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- --------|- ---------g 2281 uuaaugguga -acacuuuaa -acGUU--GG -----|GUAA UAUUCG-GAG ---GAUCG(G 2341 UCAAA)UGA- GAA---UAUU CCGG-AUG-G AAA------- ----GCCGAA -GGC(-GAAA 2401 -)GC|A---- ----ccaaca ucagagucac ua---aa--G CUU--C-AAC GCGUA-AGUU 2461 U-GGG---UA GCGAACCGG( AUUAGAGAC) CCGCAGUAG| -UCCA-AAC- CGUCAA-CAC 2521 A--UUAU-AG |--|------ ------(--- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ ---------- ---(uuuu)- -caaauCUAU 2701 A-A|--C|GC C-UGGU-GA- UACGGUG(-- -GCAA--)CA CUA--UAAAU CAAAGCAA-U 2761 UG|GCAGCG- AUAGAG---A UGCGCGGU|G GAAUAUGC-U |GUUUAA-AU CG(AAUUUAC 2821 G--------- ----)CGCAA A-AUCUUACC ACUUUUUAUU A**------- ---------- 2881 ---------- ---------- ---------- -------<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- -----**aaa ->-------- ---u---AGC UCU-UG|CA- 3121 |UU|-GC--U |Ga-aaagUU CGagc|---- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- -----(---- 3241 --)--- ---|------ ---------- ---------- (------)-- ---------- 3781 ---------- -----C-GAG C-AAGUCAUC A|UGGG|GCU UAU------- ---------A 3841 G-A-GU-GGG CU-ACA--GG -CGUAUUACA UU--GGACA- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---cccacaa 3961 guuggauacc aaaac>(--- -----)---- ---------- ---------- UGU-CCGAAU 4021 a--------- -----UACGG --AUUGG-AG u-a(gcaaaa cgagagaacu auacaguucg 4081 uuugcaucgu uaugccuugc UGAAAc-ua) g-cC-U--CC -A--UGAAG- -AAGGAAUCG 4141 C-G--AGUAA U-CGUAGA(- UCAUUAGC-- --)GCUACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -GGU--A-AC 4261 CUCUAU-UG- UGCACACA-U -UGCCCGUCA C-CUC--CGA UAA-UAGuau ugu-acagga 4321 agaacuaugg cuacac---- ---------- ---------- -(uuaa--)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- -----gucgc ggccuaggaa 4561 -cgu-augcg ugauaUUAGA GUUG-GAG-U AAGUCGUAAC A-GGUUGG-G GUA-GG(GGA 4621 -A)CCU-GC- UCCAGAGUCA AAUUUAUAU| AA**~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.P.minor 5213 bp RNA RNA 01-JAN-1998 DEFINITION Pedinomonas minor. ACCESSION No information KEYWORDS No information. SOURCE Pedinomonas minor. ORGANISM Pedinomonas minor. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF116775 BASE COUNT 448 a 113 c 162 g 455 t 4035 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ----uAAAUU 661 (UGG-)C-UC U|AGUUU-GA AAA-UAAAUU -U-UUUA-UA |CA-AA--UA ACAC-A-UGC 721 -AAACA---C Aau--|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -----uuaau u)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- --------|- 961 ---au-UG|U GUGUACGGGU GAGUUAAAAA A|AUU-GAAU ---------- ---------- 1021 ---------- -------(ua au--)----- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ------auu- --CAAUU-UU |--------- aGAUAUUA-- 1321 uGGAU-AAUU U----(-uga au-------- ---------- ---------- ------)--- 1381 AAAUU|---- UUCGA--AGA U|AUUAA-GG U-|------- (GUUA--)-- ------ACC| 1441 CACAUC-AGA --(auuu--- ---)--UCUG A|GUUUAU-( AUUU-)-AUA AUC----C-A 1501 GCA|GUG-UA AAACAUUAGA C-AAUAAGU( ---------- ----AUAG)G CUUGA-UCU| 1561 A|-GUGA-U- AU-AAA---- --AAAAAGUU ---UAA-GUA (--------u uua------- 1621 --------)U UUUAAA--UU -UUU|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -----uuauu aauuuua--- ---------- -(-uaaug-- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ------aaug auuaauaaAA GUUCA|-AUC 1921 -UAA-U---U AUGU-G(-CC AGCAGAU-GC -GGU-GA)-A ACAUAA|--- -UGA-GCA-- 1981 AAUUU-AUUU UAU----uaa auaGGU|UUA AAUUAUACAA -A-AGUG|gu uuuguu-u-- 2041 |--------- --auuuuuuu uuaaauu(-- ----uug)aa auuuaauuua aua------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- -------a|a auaaaac-ua 2281 g-----aaaa -ua-auuaau aucaaa--aa -----|UUAA UAAUUU-AGG ---UAAUA(G 2341 UAAAA)UGU- UUU---AAUC UAAA-UUC-G AAA------- ----ACUAAA -AGU(-UAUU 2401 -)-C|U---- ----uuuuug a--uucu-ua uu---uuGAC ACU--GUCGU AUGAA-AGCU 2461 U-GGG---GA UCAAAAAAG( AUUAGACAC) CUUC-GUAG| -UCCA-AGC- UGUCAA-UAA 2521 A--GGUU-UU |uu|auaaau a-----(ucc uuu------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)------ uauuuau-au cUU(GAAA)A Aau--UAAAA 2701 C-U|--A|AC C-UGAA-GAG UACGAUC(-- -ACAC--)GA UUG--AAAUU CAAAGAGC-U 2761 UG|ACGGAA- UUUAAG---A CCAAUUGU|G GCACAUGU-U |GUUUAA-UG UG(AUACGAC 2821 A--------- ----)CGUUU A-UUUUAUCA AAAUU----- -uuua----- ---------- 2881 (--uu---ua u--)------ ---------- -------<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->----ua-a a--a---AGG UGU-UG|CG- 3121 |GG|-GU--U |G------UC Ca-aa|u-uu ucu-|aua(u --uaa)uuac uaaga(uuaa 3181 aug)uuu-u- a-aaguacaa ua-------- ---------- ---------- -----(---- 3241 --)<------ ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- ---|------ ---------- ---------- (------)-- ---------- 3781 ---------- -------AUG C-AAAUUUUC C|UGGC|CCU ua-------- ---------U 3841 A-U-UU-UGA GA-UAA--GA -CUUGUGACA UU--AAUUC- ---------- ---------- 3901 ----<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(-au aac--)---- ---------- ---------- GAA-UUau-- 4021 ---------- -----AAUUU --GGUUA-GU A-U(------ ---------- ---------- 4081 ---------- ---------- UGAAA--A-) A-UA-U--UA -A--CUAAA- -UCGGAAUAA 4141 U-U--AGUAA A-AUAAAA(- CAAUUAUU-- --)GUUUAUU U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -AAU--UCGG 4261 CUUAAA-UU- UGUACACA-C -UGCUCGUCA C-AUG--ucg aaa-uuuauu uauaucuuaa 4321 auauuaauua cuaaau-uuu au-------- ---------- -(auuua-)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------- ---------- -uuaaaauuu uucuauuaau 4561 cugaauucua uaaauaauga uuga-GAU-G AAGUCGAAAC AUGGUGGU-U GUA-GU(GGA 4621 -A)GCU-GC- AGCUGAGUUU UUUAAAAA-| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- -------~|| ||| // LOCUS mt.N.oliva 5213 bp RNA RNA 01-JAN-1998 DEFINITION Nephroselmis olivacea. ACCESSION No information KEYWORDS No information. SOURCE Nephroselmis olivacea. ORGANISM Nephroselmis olivacea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF110138 BASE COUNT 434 a 299 c 412 g 364 t 3704 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------aaa cguaaGAGUU 661 (UGA-)U-CC U|GGCUC-AG AAUGAACGCU -A-GCCA-UA |GG-CC--UA ACAC-A-UGC 721 -AAGUCG-AA CGc--|-uuc u------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------gac a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ----agaa|- 961 ----gagU|G GCAAACGGGU GAGUAA--CA C|GUA-GGAA --UC---UAC CCaac-aGcu 1021 cgggg-aa-- auag---(ua uuau)---cu au--gaa-uc ccgaaua--- ------aaaa 1081 aac--uaagu guug------ ---------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- -------uua uuggaugag- --CCUGC-GG |--------- -AGGAUUA-- 1321 -GGUAGUUGG UG-AG(GUAA AAG------- ---------- ---------- ------)CUC 1381 ACCAA|---- GCCGA--UGA U|CCUUA-GC UG|---GUCU (GAGA--)GG ACGAUCAGC| 1441 CACACU-GGG AC(UGAGA-A G--)GGCCCA G|ACUUC--( UACG-)--GA AGG----C-A 1501 GCA|GUG-GG GAAUCUUGGA C-AAUGGGC( ---------- ----GAAA)G CCUGA-UCC| 1561 A|-GCUA-U- AU-GGC---- -GUGAGUGAU --GAAG-GCA (--------a uuuc------ 1621 --------)U GUUGUA-AAG -CUC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -----UUuca uugagaacga au-------- -(---uau-- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- -gauguaacu caaagaagAA GCCCC|-GGC 1921 -UAA-C---U CCGU-G(-CC AGCAGCC-GC -GGU-AA)-U ACGGGG|--- -GGG-GCU-- 1981 AGUGU-GGUU CAG--CAUGA CUGGGC|GUA AAGGGCACGU -A-GGCU|GU Uaauuacguu 2041 |ggaagcc-- --aaa----g ccucagg(-- --aaacc)cc ugag------ ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------a acgucuuuc- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---aaaac|g gauuaac-uc 2281 g-----AGAU aUA-aag--a -GGAAA--GC -----|GGAA UUUCAA-AUG ---GAGAG(G 2341 UUGAA)UUC- GUA---GAUA UUUG-AAG-G AAG------- ----GCCAAA -GGC(-GAAG 2401 -)GC|A---- ----GCUUUC U-GGUUA-UA AU---CUGAC GCU--GAGGU GCGAA-AGCA 2461 U-GGG---GA GCAACCAGG( AUUAGAUAC) CCUG-UUAG| -UCCA-UGC- CCUAAA-CGA 2521 U--GAGU-GU |UC|gugacu ugau--(uuu uu-------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)---auu gggucac-ca AGC(UAAC)G CGUGAAACAC 2701 U-C|--C|GC C-UGGG-GAG UACGGUC(-- -GCAA--)GG CUA--AAACU CAAAGGAA-U 2761 UG|ACGGGG- GCCCAU---A CAAGCGGU|G GAGCAUGU-G |GUUUAA-UU CG(AAACAAC 2821 G--------- ----)CGCAA A-ACCUUACC AGCUCUUGGU AUuuuuuua- --aguuucuu 2881 (-gua---au ga-)uagaaa c---ga(ucu u-)uu--<-- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------g ->GAA-AA-A A--C---AGG CGU-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-CU CGU-|GUC(G --UGA)GAUG UUUGG(UUC- 3181 AGU)CCU-A- U-AACGAGCG AAA-CCCUUC -----GACAA UGUUGCUAUG AA---(---- 3241 --)<------ -ucuuagaga a--------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ------>--- UUC|AGCACU CUU-UGUUGA -CUGCCC-GU (GAUA-G)AC GGG-AGGAAG 3781 -----GCG-A GGAUGA-CGU C-AAGUCCGC A|UGAC|CCU AAU------- ---------G 3841 A-G-CU-GGG CU-ACA--CA -CGUGCUACA AU--GGCGAA G-ACAA-AAG GA--AGCAA- 3901 UGAC<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UAA--)GUCG -GAGCAAAUC CA-C-AAAAA UCGuCG-UAG 4021 ---------- -----UUCGG --AUUGU-UC U-C(------ ---------- ---------- 4081 ---------- ---------- UGCAAc-uc) G-AG-A--AC -A--UGAAG- -CUGGAAUCG 4141 C-U--AGUAA U-CGUGGA(- UCAGC-AU-- --)GCCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UUG--GUAC 4261 CUGGGC-CU- UGUACAUA-C -CGCCCGUCA C-ACC--CUG GGA-AUUUUU UUG-GCCcga 4321 agguaacuac acaaauuuuu ucaugauag- auuca----- -(cuug--)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->--uggau uuauggug-- cgaauuuuua uuauguuucc 4561 -cac--gguc gaggaaguga cuga-gGU-G AAGUCGUAAC AAGGUAGU-C GUA-GG(GGA 4621 -A)CCU-GC- GGCUGGAAUA UAUCCUUU-| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.M.polym 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Marchantia polymorpha. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Marchantia polymorpha. ORGANISM Mitochondrion Marchantia polymorpha. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M68929 DEFINITION Marchantia polymorpha mitochondrion, complete genome. SOURCE Mitochondrion Marchantia polymorpha (organelle Mitochondrion Marchantia polymorpha) DNA. ORGANISM Mitochondrion Marchantia polymorpha Eukaryota; Plantae; Embryobionta; Bryophyta; Hepaticopsida; Marchantiidae; Marchantiales; Marchantiineae; Marchantiaceae. REFERENCE 1 (bases 1 to 186608) AUTHORS Oda,K., Yamato,K., Ohta,E., Nakamura,Y., Takemura,M., Nozato,N., Kohchi,T., Ogura,Y., Kanegae,T., Akashi,K. and Ohyama,K. TITLE Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNA JOURNAL J. Mol. Biol. 223, 1-7 (1992) REFERENCE 2 (sites) AUTHORS Takemura,M., Oda,K., Yamato,K., Ohta,E., Nakamura,Y., Nozato,N., Akashi,K. and Ohyama,K. TITLE Gene clusters for ribosomal proteins in the mitochondrial genome of a liverwort, Marchantia polymorpha JOURNAL Nucleic Acids Res. 20, 3199-3205 (1992) REFERENCE 3 (sites) AUTHORS Oda,K., Yamato,K., Obta,E., Nakamura,Y., Takemura,M., Nozato,N., Akashi,K. and Ohyama,K. TITLE Transfer RNA genes in the mitochondrial genome from a liverwort, Marchantia polymorpha: the absense of chloroplast-like tRNAs JOURNAL Nucleic Acids Res. 20, 3773-3777 (1992) FEATURES Location/Qualifiers tRNA join(48859..48901,49893..49937) /product="transfer RNA-Ser" /gene="tRNA-Ser" /note="gct anticodon" CDS join(51879..52214,55277..56053,57481..57546) /pseudo /gene="nad7" /codon_start=1 rRNA complement(join(146851..148822,149541..150367)) /product="26S ribosomal RNA" /gene="26S rRNA" rRNA complement(join(153544..154453,156861..157925)) /product="18S ribosomal RNA" /gene="18S rRNA" tRNA complement(1461..1540) /product="transfer RNA-Leu" /gene="tRNA-Leu" /note="taa anticodon" BASE COUNT 555 a 420 c 529 g 471 t 3238 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------au cauacucaaa aaaaaGAGUU 661 (UGA-)U-CC U|GGCUC-AG AAUGAACGCU -A-GCGA-UA |UG-CU--UA ACAC-A-UGC 721 -AAGUCG-AA CGUUG|UUUU CGuccuu(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)acguguug 841 aagguugcau ucggagaa-- -------gaa aaccuuuuuu cuucu----- --cugagcug 901 cucaacuuuu aaucaguuga gccugcggcc uccaaucaac cgugagaauc guUGAAAA|C 961 A--AA-GU|G GCGAACGGGC GAGUAA--UA U|GUG-GGAA --UC---UGC CAAAC-AGUU 1021 UGGG------ ---a---(ca aa--)---u- ---------C CCGAAUA--- ---------- 1081 ---------- ---------- ---------- ---------- ------aacg aAAGCU(aaa 1141 a----)GGC- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUG UUUGAUGAG- --CCUAC-AA |--------- -AGCAUCA-- 1321 -GGUAGUUGG UU-AG(GUAA AGG------- ---------- ---------- ------)CUG 1381 ACCAA|---- GCCAA--CGA C|GCUUA-GC GG|---GUCU (GUUA--)GG ACGAUCCGC| 1441 CGCACU-GGG AC(UGAGA-C AC-)GGCCCA G|ACUCC--( CACG-)--GG AGG----C-U 1501 GCA|GUG-GG GAAUCUUGGA C-AAUGGGC( ---------- ----GAAA)G CCUGA-UCC| 1561 A|-GCAA-U- AU-GGC---- -GUGAGUGAA --GAAG-GGC (-------aa ugca------ 1621 --------)G CUUGUA-AAG -CUC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -----UUUCG UCGAGuaugc gau------- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- --------ua ugacaagACU CGAAGAAGAA GCCCC|-GGC 1921 -UAA-C---U CCGU-G(-CC AGCAGCC-GC -GGU-AA)-G ACGGGG|--- -GGG-GCA-- 1981 AGUGU-UAUU CGG--AAUGA CUAGGC|GUA AAGGGCACGU -A-GGCG|GU GAAUCC--AG 2041 |UUGAA--AG UGAAA----G UCGCCAG(-- --CUCAA)CU GGCGG----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------AA UGCUUUCAAA ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|C AAUUUAC-UA 2281 G----aguaa -ggcauAG-A -GGAAA--GC -----|GGAA UUUCGU-GUG ---UAGCG(A 2341 UAAAA)UGC- AAA---AAUA UACG-AAG-G AAC------- ----GCCAAA -AGC(-GAAG 2401 -)GC|A---- ----GCUUUC U-GGUUC-UU UAa--cuGAC GCU--AAAGU GCGAA-AGCA 2461 U-GGG---GA GCAAACAGG( AUUAGAUAC) CCUG-GUAG| -UCCA-UGC- UGUAAA-CGA 2521 U--GAGU-GU |UC|GUUCUU GGU-cu(-ac ugauaucgca cucuuuuggg cugacuuaag 2581 cucggcuuaa ugcuuaaauu acugcaaagg uagugugacu cgauuguuuu cuucaaguuc 2641 caacaaucgu gaaaaauaug uga)ug--AU CAGGGGC-UG AGC(UAAC)G CGUUAAACAC 2701 U-C|--C|GC C-UGGG-GAG UACGGUC(-- -GCAA--)GG CUG--AAACU CAAAGGAA-U 2761 UG|ACGGGG- GCCUGC---A CAAGCGGU|G GAGCAUGU-G |GUUUAA-UU CG(AUUCAAC 2821 G--------- ----)CGCAA A-ACCUUACC AGCCCUUGAC Auaugaa--- ---------- 2881 ---------- ---------- ---------- --------ua agugugcuug uccuuaacgg 2941 gaugguacga aa-------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- --auu-ca-u a--c---AGG UGU-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-CU CGU-|GUC(U --UGA)GACG UUGGG(UUA- 3181 AGU)CCU-A- U-AACGAGCG CAA-CCCUUG -----uuuug uguugcua-- ---------- 3241 ----agacau gcuuugguuc aauccu---u gaccacugga -gacugacga agacuacgcc 3301 gugaaaaugg aggauaccga cgagcuaagu uuuugcaaac gccguguggc ucauuc---- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- --ugaaaaga 3601 auaugaccau acaaaguuuu cauacgguau ucuccgacga acgaagcucu cagagcauug 3661 uacacuucac acugagga-- ----acucga ucuuagucaa aaugauugac acuccaagcc 3721 augugc---- ---|UGCACU CAC-AAAAAA -CUGCCA-GU (GAUA-U)AC UGG-AGGAAG 3781 -----GUG-G GGAUGA-CGU C-AAGUCCGC A|UGGC|CCU UAU------- ---------G 3841 G-G-CU-GGG CU-ACA--CA -CGUGCUACA AU--GGCAAU U-ACAA-UUG GA--AGCAA- 3901 UGCU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UAA--)GGCG -GACGG-AAU CCAG-AAAGA UUG-CCUAAG 4021 ---------- -----UUCGG --AUUGU-UC U-C(------ ---------- ---------- 4081 ---------- ---------- ugcaac-uc) G-AG-A--AC -A--UGAAG- -UUGGAAUCG 4141 C-U--AGUAA U-CGCGGA(- UCAGC-AU-- --)GCCGCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -uaa--guac 4261 uCGGGC-CC- UGUACAAA-C -UGCCCGUCA A-ACC--AUG GGA-auuggu uuc-gcccga 4321 agcagccuac caaaga-uca cccauuacu- cgagguguuc -(------)< cacgccg(uu 4381 g)uug-agug u--------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->ggucuac uagaguca-- uuggugaucu u-auguagga 4561 gaccaagguu gggccauuGA CUGA-GGU-U AAGUCGUAAC AAGGUAGC-C GCA-GG(GGA 4621 -A)CCU-GU- GGCUGGAUUG ACUCC----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.S.cerea 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Secale cereale. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Secale cereale. ORGANISM Mitochondrion Secale cereale. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z14059 ID MISCREPU3 standard; DNA; ORG; 3389 BP. XX AC Z14059; XX DT 16-JUL-1992 (Rel. 32, Created) DT 16-JUL-1992 (Rel. 32, Last updated, Version 1) XX DE S.cereale mitochondrion fMet, 18S, 5S repeat unit DNA XX KW 18S ribosomal RNA; 5S RNA; transfer RNA-Met. XX OS Secale cereale (rye) OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Liliopsida; OC Commelinidae; Cyperales; Poaceae. XX OG Mitochondrion XX RN [1] RP 1-3389 RA Coulthart M.B., Spencer D.F., Gray M.W.; RT "Comparative analysis of a recombining-repeat sequence family in RT the mitochondrial genomes of wheat (Triticum aestivum L.) and rye RT (Secale cereale L.)"; RL Unpublished. XX RN [2] RP 1-3389 RA Gray M.W.; RT ; RL Submitted (13-JUL-1992) on tape to the EMBL Data Library by: RL Gray M. W., Dalhousie University, Biochemistry, 8F1 Tupper Medical RL Building, Halifax, Nova Scotia, Canada, B3H 4H7 XX CC *source: strain=Kodiak; CC *source: stage=Seedling; CC *source: tissue=Shoot; CC *source: clone=H3.4; CC *source: is_macronuclear=N; CC *source: is_proviral=N; CC *source: is_germline=N; XX FH Key Location/Qualifiers FH FT tRNA 501..574 FT /product= "tRNA-Met(CAU)" /gene= "trnfM" FT /anticodon= (pos:535..537,aa: Met) /note= "the FT presence of a 'G' at position 522 produces a SalI FT restriction site not found in the wheat trnfM" FT /citation= ([1]) FT rRNA 576..2552 FT /function= "small subunit ribosomal RNA" /product= FT "18S Ribosomal RNA" /gene= "rrn18" /standard_name= FT "16S-like rRNA" /citation= ([1]) FT misc_RNA 2667..2788 FT /product= "5S RNA" /gene= "rrn5" /standard_name= FT "5S ribosomal RNA" /citation= ([1]) FT misc_RNA 2887..2947 FT /product= "tRNA-like element t1" /standard_name= FT "t1 element" /citation= ([1]) FT misc_RNA 3226..3325 FT /product= "tRNA-like element t2" /standard_name= FT "t2 element" /citation= ([1]) FT misc_feature 113..2967 FT /product= "common sequence unit" /standard_name= FT "fMet,18S,5S repeat unit" /citation= ([1]) XX SQ Sequence 3389 BP; 940 A; 720 C; 959 G; 770 T; 0 other; BASE COUNT 501 a 464 c 604 g 408 t 3236 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------a ucauagucaa aaucuGAGUU 661 (UGA-)U-CC U|GGCUC-AG AAGGAACGCU -A-GCUA-UA |UG-CU--UA ACAC-A-UGC 721 -AAGUCG-AA CGUUG|UUUU CGGggag(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)cugggcag 841 aaggaaaaga ggcuccuagc u-aaag---- -uugucucgc ccugcuucaa aacuacaggg 901 cgcgcgcuac ggcuuugacc uaacggccuc cguuugcugg aaucggaaua gUUGAGAA|C 961 A--AA-GU|G GCGAACGGGU GCGUAA--CG C|GUG-GGAA --UC---UGC CGAAC-AGUU 1021 CGGG------ ---c---(ca aa--)---u- ---------C CUGAAGA--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- -AAGCU(caa 1141 a----)AGC- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUG UUUGAUGAG- --CCUGC-GU |--------- -AGUAUUA-- 1321 -GGUAGUUGG UC-AG(GUAA AGG------- ---------- ---------- ------)CUG 1381 ACCAA|---- GCCAA--UGA U|GCUUA-GC UG|---GUCU (UUUC--)GG AUGAUCAGC| 1441 CACACU-GGG AC(UGAGA-C AC-)GGCCCG G|ACUCC--( CACG-)--GG GGG----C-A 1501 GCA|GUG-GG GAAUCUUGGA C-AAUGGGC( ---------- ----GAAA)G CCCGA-UCC| 1561 A|-GCAA-U- AU-CGC---- -GUGAGUGAA --GAAG-GGC (-------aa ugcc------ 1621 --------)G CUUGUA-AAG -CUC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -----UUUCG UCGAGugcgc gau------- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- --------ca ugacaggACU CGAGGAAGAA GCCCC|-GGC 1921 -UAA-C---U CCGU-G(-CC AGCAGCC-GC -GGU-AA)-G ACGGGG|--- -GGG-GCA-- 1981 AGUGU-UCUU CGG--AAUGA CUGGGC|GUA AAGGGCACGU -A-GGCG|GU GAAUCG--GG 2041 |UUGAA--AG UGAAA----G UCGCCA-(-- --AAAAG)-U GGCGG----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------AA UGCUCUCGAA ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|C AAUUCAC-UU 2281 G-----AGUG -AG-ACAG-A -GGAGA--GU -----|GGAA UUUCGU-GUG ---UAGGG(G 2341 UGAAA)UCC- GUA---GAUC UACG-AAG-G AAC------- ----GCCAAA -AGC(-GAAG 2401 -)GC|A---- ----GCUCUC U-GGGUC-CC UA---CCGAC GCU--GGGGU GCGAA-AGCA 2461 U-GGG---GA GCGAACAGG( AUUAGAUAC) CCUG-GUAG| -UCCA-UGC- CGUAAA-CGA 2521 U--GAGU-GU |UC|GCCCUU GGU-cu(-ac gc-------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)gg--AU CAGGGGC-CC AGC(UAAC)G CGUGAAACAC 2701 U-C|--C|GC C-UGGG-GAG UACGGUC(-- -GCAA--)GA CCG--AAACU CAAAGGAA-U 2761 UG|ACGGGG- GCCUGC---A CAAGCGGU|G GAGCAUGU-G |GUUUAA-UU CG(AUACAAC 2821 G--------- ----)CGCAA A-ACCUUACC AGCCCUUGAC AUAUGAA--- ---------- 2881 ---------- ---------- ---------- -------uUU-CA-U A--C---AGG UGC-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-CU CGU-|GUC(G --UGA)GAUG UUUGG(UCA- 3181 AGU)CCU-A- U-AACGAGCG AAA-CCCUCG -----UUUUG UGUUGCUG-- -----(---- 3241 --)--- ---|CGCACU CAC-GAGGGA -CUGCCA-GU (GAGA-U)AC UGG-AGGAAG 3781 -----GUG-G GGAUGA-CGU C-AAGUCCGC A|UGGC|CCU UAU------- ---------G 3841 G-G-CU-GGG CC-ACA--CA -CGUGCUACA AU--GGCAAU G-ACAA-UGG GA--AGCAA- 3901 GGCU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UAA--)GGCG -GAGCG-AAU CCGG-AAAGA UUG-CCUCAG 4021 ---------- -----UUCGG --AUUGU-UC U-C(------ ---------- ---------- 4081 ---------- ---------- UGCAAc-uc) G-GG-A--AC -A--UGAAG- -UUGAAAUCG 4141 C-U--AGUAA U-CGCGGA(- UCAGC-AU-- --)GCCGCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--GUAC 4261 CCGGGC-CC- UGUACACA-C -CGCCCGUCA C-ACC--CUG GGA-auuggu uuc-gcccga 4321 agcaucggac caauga-uca cccaugacu- ucuguguac- -(cacua-)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->gugccac aaaggccu-- uugguggucu uauuggcgca 4561 uaccacggug gggucUUCGA CUGG-GGU-G AAGUCGUAAC AAGGUAGC-C GUA-GG(GGA 4621 -A)CCU-GU- GGCUGGAUUG AAUCC----| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.aes.1 5213 bp RNA RNA 17-JAN-1983 DEFINITION Mitochondrion Triticum aestivum. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Triticum aestivum. ORGANISM Mitochondrion Triticum aestivum. REFERENCE 1 (sites) AUTHORS No information JOURNAL 493-497(1984) STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5213) Corresponding GenBank entry: K01229 Phylo:Mitochondria,Plant,wheat BASE COUNT 500 a 455 c 595 g 407 t 3256 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------a ucauagucaa aaucuGAGUU 661 (UGA-)U-CC U|GGCUC-AG AAGGAACGCU -A-GCUA-UA |UG-CU--UA ACAC-A-UGC 721 -AAGUCG-AA CGUUG|UUUU CGGggag(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)cugggcag 841 aaggaaaaga ggcuccuagc u-aaag---- -uugucucgc ccugcuucaa aacuacaggg 901 cgcgcgcuac ggcuuugacc uaacggccuc cguuugcugg aaucggaaua gUUGAGAA|C 961 A--AA-GU|G GCGAACGGGU GCGUAA--CG C|GUG-GGAA --UC---UGC CGAAC-AGUU 1021 CGGG------ ---c---(ca aa--)---u- ---------C CUGAAGA--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- -AAGCU(caa 1141 a----)AGC- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUG UUUGAUGAG- --CCUGC-GU |--------- -AGUAUUA-- 1321 -GGUAGUUGG UC-AG(GUAA AGG------- ---------- ---------- ------)CUG 1381 ACCAA|---- GCCAA--UGA U|GCUUA-GC UG|---GUCU (UUUC--)GG AUGAUCAGC| 1441 CACACU-GGG AC(UGAGA-C AC-)GGCCCG G|ACUCC--( CACG-)--GG GGG----C-A 1501 GCA|GUG-GG GAAUCUUGGA C-AAUGGGC( ---------- ----GAAA)G CCCGA-UCC| 1561 A|-GCAA-U- AU-CGC---- -GUGAGUGAA --GAAG-GGC (-------aa ugcc------ 1621 --------)G CUUGUA-AAG -CUC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -----UUUCG UCGAGugcgc gau------- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- --------ca ugacaggACU CGAGGAAGAA GCCCC|-GGC 1921 -UAA-C---U CCGU-G(-CC AGCAGCC-GC -GGU-AA)-G ACGGGG|--- -GGG-GCA-- 1981 AGUGU-UCUU CGG--AAUGA CUGGGC|GUA AAGGGCACGU -A-GGCG|GU GAAUCG--GG 2041 |UUGAA--AG UGAAA----G UCGCCA-(-- --AAAAG)-U GGCGG----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------AA UGCUCUCGAA ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|C AAUUCAC-UU 2281 G-----AGUG -AG-ACAG-A -GGAGA--GU -----|GGAA UUUCGU-GUG ---UAGGG(G 2341 UGAAA)UCC- GUA---GAUC UACG-AAG-G AAC------- ----GCCAAA -AGC(-GAAG 2401 -)GC|A---- ----GCUCUC U-GGGUC-CC UA---CCGAC GCU--GGGGU GCGAA-AGCA 2461 U-GGG---GA GCGAACAGG( AUUAGAUAC) CCUG-GUAG| -UCCA-UGC- CGUAAA-CGA 2521 U--GAGU-GU |UC|GCCCUU GGU-cu(-ac gc-------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)gg--AU CAGGGGC-CC AGC(UAAC)G CGUGAAACAC 2701 U-C|--C|GC C-UGGG-GAG UACGGUC(-- -GCAA--)GA CCG--AAACU CAAAGGAA-U 2761 UG|ACGGGG- GCCUGC---A CAAGCGGU|G GAGCAUGU-G |GUUUAA-UU CG(AUACAAC 2821 G--------- ----)CGCAA A-ACCUUACC AGCCCUUGAC AUAUGAA--- ---------- 2881 ---------- ---------- ---------- -------uUU-CA-U A--C---AGG UGC-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-CU CGU-|GUC(G --UGA)GAUG UUUGG(UCA- 3181 AGU)CCU-A- U-AACGAGCG AAA-CCCUCG -----UUUUG UGUUGCUG-- -----(---- 3241 --)--- ---|CGCACU CAC-GAGGGA -CUGCCA-GU (GAGA-U)AC UGG-AGGAAG 3781 -----GUG-G GGAUGA-CGU C-AAGUCCGC A|UGGC|CCU UAU------- ---------G 3841 G-G-CU-GGG CC-ACA--CA -CGUGCUACA AU--GGCAAU G-ACAA-UGG GA--AGCAA- 3901 GGCU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UAA--)GGCG -GAGCG-AAU CCGG-AAAGA UUG-CCUCAG 4021 ---------- -----UUCGG --AUUGU-UC U-C(------ ---------- ---------- 4081 ---------- ---------- UGCAAc-uc) G-GG-A--AC -A--UGAAG- -UUGAAAUCG 4141 C-U--AGUAA U-CGCGGA(- UCAGC-AU-- --)GCCGCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--GUAC 4261 CCGGGC-CC- UGUACACA-C -CGCCCGUCA C-ACC--CUG GGA-auuggu uuc-gcccga 4321 agcaucggac caauga-uca cccaugacu- ucuguguac- -(cacua-)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->gugccac aaaggccu-- uugguggucu uauuggcgca 4561 uaccacggug gggucUUCGA CUGG-GGU-G AAGUCGUAAC AAGGUAGC-C GUA-GG(GGA 4621 -A)CCU-GU- GGCUGGAUUG AAUCC----| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.T.aes.2 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Triticum aestivum. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Triticum aestivum. ORGANISM Mitochondrion Triticum aestivum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z14060 ID MISCREPU4 standard; DNA; ORG; 2229 BP. XX AC Z14060; XX DT 16-JUL-1992 (Rel. 32, Created) DT 16-JUL-1992 (Rel. 32, Last updated, Version 1) XX DE T.aestivum mitochondrion fMet, 18S, 5S repeat unit DNA XX KW 18S ribosomal RNA; transfer RNA-Met. XX OS Triticum aestivum (wheat) OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Liliopsida; OC Commelinidae; Cyperales; Poaceae. XX OG Mitochondrion XX RN [1] RP 1-2229 RA Coulthart M.B., Spencer D.F., Gray M.W.; RT "Comparative analysis of a recombining-repeat sequence family in RT the mitochondrial genomes of wheat (Triticum aestivum L.) and rye RT (Secale cereale L.)"; RL Unpublished. XX RN [2] RP 1-2229 RA Gray M.W.; RT ; RL Submitted (13-JUL-1992) on tape to the EMBL Data Library by: RL Gray M. W., Dalhousie University, Biochemistry, 8F1 Tupper Medical RL Building, Halifax, Nova Scotia, Canada, B3H 4H7 XX CC *source: strain=Capitole; CC *source: stage=Seedling; CC *source: tissue=Shoot; CC *source: clone_library=F. Quetier; CC *source: clone=S5, 6b; CC *source: is_macronuclear=N; CC *source: is_proviral=N; CC *source: is_germline=N; XX FH Key Location/Qualifiers FH FT misc_feature 1110..2229 FT /product= "common sequence unit (5' end)" FT /standard_name= "fMet,18S,5S repeat unit" FT /citation= ([1]) FT tRNA 1371..1444 FT /product= "tRNA-Met(CAU)" /evidence= EXPERIMENTAL FT /gene= "trnfM" /standard_name= "initiator FT methionine transfer RNA" /anticodon= FT (pos:1405..1407,aa:Met) /label= tRNA-fMet /note= FT "accession no. X01991; see also Joyce PBM,Gray MW FT (1989) Nucleic Acids Research 17:5461-5476" FT /citation= ([1]) FT rRNA 1446..>2229 FT /partial /function= "small subunit ribosomal RNA" FT /product= "18S Ribosomal RNA" /evidence= FT EXPERIMENTAL /gene= "rrn18" /standard_name= FT "16S-like rRNA" /note= "see accession number FT K01229" /citation= ([1]) FT - 1..2229 FT /note= "this sequence represents part of the 19kb FT Sal clone" XX SQ Sequence 2229 BP; 605 A; 481 C; 526 G; 617 T; 0 other; BASE COUNT 209 a 171 c 246 g 158 t 4429 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------a ucauagucaa aaucuGAGUU 661 (UGA-)U-CC U|GGCUC-AG AAGGAACGCU -A-GCUA-UA |UG-CU--UA ACAC-A-UGC 721 -AAGUCG-AA CGUUG|UUUU CGGggag(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)cugggcag 841 aaggaaaaga ggcuccuagc u-aaag---- -uugucucgc ccugcuucaa aacuacaggg 901 cgcgcgcuac ggcuuugacc uaacggccuc cguuugcugg aaucggaaua gUUGAGAA|C 961 A--AA-GU|G GCGAACGGGU GCGUAA--CG C|GUG-GGAA --UC---UGC CGAAC-AGUU 1021 CGGG------ ---c---(ca aa--)---u- ---------C CUGAAGA--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- -AAGCU(caa 1141 a----)AGC- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUG UUUGAUGAG- --CCUGC-GU |--------- -AGUAUUA-- 1321 -GGUAGUUGG UC-AG(GUAA AGG------- ---------- ---------- ------)CUG 1381 ACCAA|---- GCCAA--UGA U|GCUUA-GC UG|---GUCU (UUUC--)GG AUGAUCAGC| 1441 CACACU-GGG AC(UGAGA-C AC-)GGCCCG G|ACUCC--( CACG-)--GG GGG----C-A 1501 GCA|GUG-GG GAAUCUUGGA C-AAUGGGC( ---------- ----GAAA)G CCCGA-UCC| 1561 A|-GCAA-U- AU-CGC---- -GUGAGUGAA --GAAG-GGC (-------aa ugcc------ 1621 --------)G CUUGUA-AAG -CUC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -----UUUCG UCGAGugcgc gau------- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- --------ca ugacaggACU CGAGGAAGAA GCCCC|-GGC 1921 -UAA-C---U CCGU-G(-CC AGCAGCC-GC -GGU-AA)-G ACGGGG|--- -GGG-GCA-- 1981 AGUGU-UCUU CGG--AAUGA CUGGGC|GUA AAGGGCACG- -UAGGCG|GU GAAUCG--GG 2041 |UUGAA--AG UGAAA----G UCGCCA-(-- --AAAAG)-U GGCGG----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------AA UGCUCUCGAA ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|C AAUUCAC-UU 2281 G-----AGUG -AG-ACAG-A -GGAGA--GU -----|GGAA UUUCGU-GUG ---UAGGG(G 2341 UGAAA)UCC- GUA---GAUC UACG-AAG-G AAC------- ----GCCAAA -AGC(-GAAG 2401 -)GC|A---- ----GCUCUC ~-~~~~~-~~ ~~---~~~~~ ~~~--~~~~~ ~~~~~-~~~~ 2461 ~~~~~--~~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~-~~~~| -~~~~-~~~- ~~~~~~-~~~ 2521 ~--~~~~-~~ |~~~~~~~~~ ~~~-~~(-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~--~~ ~~~~~~~-~~ ~~~(~~~~)~ ~~~~~~~~~~ 2701 ~-~|--~|~~ ~-~~~~-~~~ ~~~~~~~(-- ~~~~~--)~~ ~~~--~~~~~ ~~~~~~~~-~ 2761 ~~|~~~~~~~ ~~~~~~---~ ~~~~~~~~|~ ~~~~~~~~-~ |~~~~~~~~~ ~~(~~~~~~~ 2821 ~--------- ----)~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~---~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~>~~~~~~~~ ~--~~~~~~~ ~~~-~~|~~- 3121 |~~|~~~--~ |~------~~ ~~~~~|~-~~ ~~~~|~~~(~ --~~~)~~~~ ~~~~~(~~~- 3181 ~~~)~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ -----~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3241 ~~)<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~|~~~~~~ ~~~-~~~~~~ -~~~~~~-~~ (~~~~-~)~~ ~~~-~~~~~~ 3781 -----~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~|~~~ ~~~------- ---------~ 3841 ~-~-~~-~~~ ~~-~~~--~~ -~~~~~~~~~ ~~-~~~~~~~ ~~~~~~-~~~ ~~--~~~~~~ 3901 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~>(--~ ~~~--)~~~~ -~~~~~-~~~ ~~~~-~~~~~ ~~~-~~~~~~ 4021 ---------- -----~~~~~ --~~~~~-~~ ~-~(~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~) ~-~~-~--~~ -~--~~~~~- -~~~~~~~~~ 4141 ~-~--~~~~~ ~-~~~~~~(- ~~~~~-~~-- --)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~--~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -(~~~~~~)< ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.T.aes.3 5213 bp RNA RNA 17-FEB-1997 DEFINITION Mitochondrion Triticum aestivum.; 18S ribosomal RNA; 5S RNA; atpA; transfer RNA-Met; transfer RNA-Pro. ACCESSION Z14078 S55392 S55400 S55409 KEYWORDS 18S ribosomal RNA; 5S RNA; atpA; transfer RNA-Met; transfer RNA-Pro. SOURCE Mitochondrion Triticum aestivum. ORGANISM Mitochondrion Triticum aestivum. REFERENCE 1 (bases 1 to 6251) AUTHORS Coulthart,M.B., Spencer,D.F. and Gray,M.W. TITLE in the mitochondrial genomes of wheat (Triticum aestivum L.) and rye (Secale cereale L.) Comparative analysis of a recombining-repeat-sequence family JOURNAL Curr. Genet. 23 (3), 255-264 (1993) STANDARD No information REFERENCE 2 (bases 1 to 1955) AUTHORS Spencer,D.F., Schnare,M.N. and Gray,M.W. TITLE Pronounced structural similarities between the small subunit ribosomal RNA genes of wheat mitochondria and Escherichia coli JOURNAL Proc. Natl. Acad. Sci. U.S.A. 81 (2), 493-497 (1984) STANDARD No information REFERENCE 3 (bases 1 to 6251) AUTHORS Gray,M.W. TITLE Direct Submission JOURNAL Submitted (13-JUL-1992) Gray M. W., Dalhousie University, Biochemistry, 8F1 Tupper Medical Building, Halifax, Nova Scotia, Canada, B3H 4H7 STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z14078 BASE COUNT 500 a 455 c 593 g 407 t 3258 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------a ucauagucaa aaucuGAGUU 661 (UGA-)U-CC U|GGCUC-AG AAGGAACGCU -A-GCUA-UA |UG-CU--UA ACAC-A-UGC 721 -AAGUCG-AA CGUUG|UUUU CGGGGAG(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)cugggcag 841 aaggaaaaga ggcuccuagc u-aaag---- -uugucucgc ccugcuucaa aacuacaggg 901 cgcgcgcuac ggcuuugacc uaacggccuc cguuugcugg aaucggaaua gUUGAGAA|C 961 A--AA-GU|G GCGAACGGGU GCGUAA--CG C|GUG-GGAA --UC---UGC CGAAC-AGUU 1021 CGGG------ ---c---(ca aa--)---u- ---------C CUGAAGA--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- -AAGCU(caa 1141 a----)AGC- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUG UUUGAUGAG- --CCUGC-GU |--------- -AGUAUUA-- 1321 -GGUAGUUGG UC-AG(GUAA AGG------- ---------- ---------- ------)CUG 1381 ACCAA|---- GCCAA--UGA U|GCUUA-GC UG|---GUCU (UUUC--)GG AUGAUCAGC| 1441 CACACU-GGG AC(UGAGA-C AC-)GGCCCG G|ACUCC--( CACG-)--GG GGG----C-A 1501 GCA|GUG-GG GAAUCUUGGA C-AAUGGGC( ---------- ----GAAA)G CCCGA-UCC| 1561 A|-GCAA-U- AU-CGC---- -GUGAGUGAA --GAAG-GGC (-------aa ugcc------ 1621 --------)G CUUGUA-AAG -CUC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -----UUUCG UCGAGugcgc gau------- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- --------ca ugacaggACU CGAGGAAGAA GCCCC|-GGC 1921 -UAA-C---U CCGU-G(-CC AGCAGCC-GC -GGU-AA)-G ACGGGG|--- -GGG-GCA-- 1981 AGUGU-UCUU CGG--AAUGA CUGGGC|GUA AAGGGCACGU -A-GGCG|GU GAAUCG--GG 2041 |UUGAA--AG UGAAA----G UCGCCA-(-- --AAAAG)-U GGCGG----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------AA UGCUCUCGAA ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|C AAUUCAC-UU 2281 G-----AGUG -AG-ACAG-A -GGAGA--GU -----|GGAA UUUCGU-GUG ---UAGGG(G 2341 UGAAA)UCC- GUA---GAUC UACG-AAG-G AAC------- ----GCCAAA -AGC(-GAAG 2401 -)GC|A---- ----GCUCUC U-GGGUC-CC UA---CCGAC GCU--GGGGU GCGAA-AGCA 2461 U-GGG---GA GCGAACAGG( AUUAGAUAC) CCUG-GUAG| -UCCA-UGC- CGUAAA-CGA 2521 U--GAGU-GU |UC|GCCCUU GGU-cu(-ac gc-------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)gg--AU CAGGGGC-CC AGC(UAAC)G CGUGAAACAC 2701 U-C|--C|GC C-UGGG-GAG UACGGUC(-- -GCAA--)GA CCG--AAACU CAAAGGAA-U 2761 UG|ACGGGG- GCCUGC---A CAAGCGGU|G GAGCAUGU-G |GUUUAA-UU CG(AUACAAC 2821 G--------- ----)CGCAA A-ACCUUACC AGCCCUUGAC AUAUGAA--- ---------- 2881 ---------- ---------- ---------- -------UUU-CA-U A--C---AGG UGC-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-CU CGU-|GUC(G --UGA)GAUG UUUGG(UCA- 3181 AGU)CCU-A- U-AACGAGCG AAA-CCCUCG -----UUUUG UGUUGCUG-- -----(---- 3241 --)--- ---|CGCACU CAC-GAGGGA -CUGCCA-GU (GAGA-U)AC UGG-AGGAAG 3781 -----GUG-G GGAUGA-CGU C-AAGUCCGC A|UGGC|CCU UAU------- ---------G 3841 G-G-CU-GGG CC-ACA--CA -CGUGCUACA AU--GGCAAU G-ACAA-UGG GA--AGCAA- 3901 GGCU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UAA--)GGCG -GAGCG-AAU CCGG-AAAGA UUG-CCUCAG 4021 ---------- -----UUCGG --AUUGU-UC U-C(------ ---------- ---------- 4081 ---------- ---------- UGCAAc-uc) G-GG-A--AC -A--UGAAG- -UUGAAAUCG 4141 C-U--AGUAA U-CGCGGA(- UCAGC-AU-- --)GCCGCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--GUAC 4261 CCGGGC-CC- UGUACACA-C -CGCCCGUCA C-ACC--CUG GGA-auuggu uuc-GCCCGA 4321 Agcaucggac caa-uga-uc acccaugac- uucuguguac -(cacua-)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->gugccac aaaggccu-u ug-guggucu uauuggcgca 4561 uaccacGGUg gggucUUCGA CUGG-GGU-G AAGUCGUAAC AAGGUAGC-C GUA-GG(GGA 4621 -A)CCU-GU- GGCUGGAUUG AAUCC----| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.Z.may.1 5213 bp RNA RNA ~?~???? DEFINITION Mitochondria Zea mays. ACCESSION No information KEYWORDS No information. SOURCE Mitochondria Zea mays. ORGANISM Mitochondria Zea mays. REFERENCE 1 (bases 1 to 6251) AUTHORS No information JOURNAL 6629-6644(1983?)+other ref. STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5213) Corresponding GenBank entry: X00794 Phylo:Mitochondria,Plant,Zea BASE COUNT 491 a 463 c 602 g 406 t 3251 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- --------aa aaucuGAGUU 661 (UGA-)U-CC U|GGCUC-AG AAGGAACGCU -A-GCUA-UA |UG-CU--UA ACAC-A-UGC 721 -AAGUCG-AA CGUUG|UUUU CGGggag(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)cugggcag 841 aaggaaaaga ggcuccuagc u-aaag---- -uugucucgc ccugc----- --cugcaggg 901 cgcgcgcaac ggcuuugacc uaacggccuc cguuugcugg aaucggaaua gUUGAGAA|C 961 A--AA-GU|G GCGAACGGGU GCGUAA--CG C|GUG-GGAA --UC---UGC CGAAC-AGUU 1021 CGGG------ ---c---(ca aa--)---u- ---------C CUGAAGA--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- -AAGCU(caa 1141 a----)AGC- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUG UUUGAUGAG- --CCUGC-GU |--------- -AGUAUUA-- 1321 -GGUAGUUGG UC-AG(GUAA AGG------- ---------- ---------- ------)CUG 1381 ACCAA|---- GCCAA--UGA U|GCUUA-GC UG|---GUCU (UUUC--)GG AUGAUCAGC| 1441 CACACU-GGG AC(UGAGA-C AC-)GGCCCG G|ACUCC--( CACG-)--GG GGG----C-A 1501 GCA|GUG-GG GAAUCUUGGA C-AAUGGGC( ---------- ----GAAA)G CCCGA-UCC| 1561 A|-GCAA-U- AU-CGC---- -GUGAGUGAA --GAAG-GGC (-------aa ugcc------ 1621 --------)G CUUGUA-AAG -CUC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -----UUUCG UCGAGugcgc gau------- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- --------ca ugacaggACU CGAGGAAGAA GCCCC|-GGC 1921 -UAA-C---U CCGU-G(-CC AGCAGCC-GC -GGU-AA)-G ACGGGG|--- -GGG-GCA-- 1981 AGUGU-UCUU CGG--AAUGA CUGGGC|GUA AAGGGCACGU -A-GGCG|GU GAAUCG--GG 2041 |UUGAA--AG UGAAA----G UCGCCA-(-- --AAAAG)-U GGCGG----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------AA UGCUCUCGAA ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|C AAUUCAC-UU 2281 G-----AGUG -AG-ACAG-A -GGAGA--GU -----|GGAA UUUCGU-GUG ---UAGGG(G 2341 UGAAA)UCC- GUA---GAUC UACG-AAG-G AAC------- ----GCCAAA -AGC(-GAAG 2401 -)GC|A---- ----GCUCUC U-GGGUC-CC UA---CCGAC GCU--GGGGU GCGAA-AGCA 2461 U-GGG---GA GCGAACAGG( AUUAGAUAC) CCUG-GUAG| -UCCA-UGC- CGUAAA-CGA 2521 U--GAGU-GU |UC|GCCCUU GGU-cu(guc uacgcuacgc uacgc----- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)gg--AU CAGGGGC-CC AGC(UAAC)G CGUGAAACAC 2701 U-C|--C|GC C-UGGG-GAG UACGGUC(-- -GCAA--)GA CCG--AAACU CAAAGGAA-U 2761 UG|ACGGGG- GCCUGC---A CAAGCGGU|G GAGCAUGU-G |GUUUAA-UU CG(AUACAAC 2821 G--------- ----)CGCAA A-ACCUUACC AGCCCUUGAC AUAUGAA--- ---------- 2881 ---------- ---------- ---------- -------uUU-CA-U A--C---AGG UGC-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-CU CGU-|GUC(G --UGA)GAUG UUUGG(UCA- 3181 AGU)CCU-A- U-AACGAGCG AAA-CCCUCG -----UUUUG UGUUGCUG-- -----(---- 3241 --)--- ---|CGCACU CAC-GAGGGA -CUGCCA-GU (GAGA-U)AC UGG-AGGAAG 3781 -----GUG-G GGAUGA-CGU C-AAGUCCGC A|UGGC|CCU UAU------- ---------G 3841 G-G-CU-GGG CC-ACA--CA -CGUGCUACA AU--GGCAAU G-ACAA-UGG GA--AGCAA- 3901 GGCU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UAA--)GGCG -GAGCG-AAU CCGG-AAAGA UUG-CCUCAG 4021 ---------- -----UUCGG --AUUGU-UC U-C(------ ---------- ---------- 4081 ---------- ---------- UGCAAc-uc) G-GG-A--AC -A--UGAAG- -UAGAAAUCG 4141 C-U--AGUAA U-CGCGGA(- UCAGC-AU-- --)GCCGCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--GUAC 4261 CCGGGC-CC- UGUACACA-C -CGCCCGUCA C-ACC--CUG GGA-auuggu uuc-gcccga 4321 agcaucggac caauga-uca cccaugacu- ucuguguac- -(cacua-)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->gugccac aaaggccu-- uugguggucu uauuggcgca 4561 uaccacggug gggucUUCGA CUGG-GGU-G AAGUCGUAAC AAGGUAGC-C GUA-GG(GGA 4621 -A)CCU-GU- GGCUGGAUUG AAUCCUUC-| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.Z.may.2 5213 bp RNA RNA 13-JUL-1995 DEFINITION Mitochondrion Zea mays.; 18S ribosomal RNA; ribosomal RNA. ACCESSION M10248 KEYWORDS 18S ribosomal RNA; ribosomal RNA. SOURCE Mitochondrion Zea mays. ORGANISM Mitochondrion Zea mays. REFERENCE 1 (bases 1 to 2588) AUTHORS Dale,R.M., McClure,B.A. and Houchins,J.P. TITLE sequential series of overlapping clones for use in DNA sequencing: application to sequencing the corn mitochondrial 18 S rDNA A rapid single-stranded cloning strategy for producing a JOURNAL Plasmid 13 (1), 31-40 (1985) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: M10248 BASE COUNT 494 a 463 c 603 g 407 t 3246 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------a ucauagucaa aaucuGAGUU 661 (UGA-)U-CC U|GGCUC-AG AAGGAACGCU -A-GCUA-UA |UG-CU--UA ACAC-A-UGC 721 -AAGUCG-AA CGUUG|UUUU CGGGGAG(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)cugggcag 841 aaggaaaaga ggcuccuagc u-aaag---- -uugucucgc ccugc----- --cugcaggg 901 cgcgcgcaac ggcuuugacc uaacggccuc cguuugcugg aaucggaaua gUUGAGAA|C 961 A--AA-GU|G GCGAACGGGU GCGUAA--CG C|GUG-GGAA --UC---UGC CGAAC-AGUU 1021 CGGG------ ---c---(ca aa--)---u- ---------C CUGAAGA--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- -AAGCU(caa 1141 a----)AGC- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUG UUUGAUGAG- --CCUGC-GU |--------- -AGUAUUA-- 1321 -GGUAGUUGG UC-AG(GUAA AGG------- ---------- ---------- ------)CUG 1381 ACCAA|---- GCCAA--UGA U|GCUUA-GC UG|---GUCU (UUUC--)GG AUGAUCAGC| 1441 CACACU-GGG AC(UGAGA-C AC-)GGCCCG G|ACUCC--( CACG-)--GG GGG----C-A 1501 GCA|GUG-GG GAAUCUUGGA C-AAUGGGC( ---------- ----GAAA)G CCCGA-UCC| 1561 A|-GCAA-U- AU-CGC---- -GUGAGUGAA --GAAG-GGC (-------aa ugcc------ 1621 --------)G CUUGUA-AAG -CUC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -----UUUCG UCGAGugcgc gau------- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- --------ca ugacaggACU CGAGGAAGAA GCCCC|-GGC 1921 -UAA-C---U CCGU-G(-CC AGCAGCC-GC -GGU-AA)-G ACGGGG|--- -GGG-GCA-- 1981 AGUGU-UCUU CGG--AAUGA CUGGGC|GUA AAGGGCACGU -A-GGCG|GU GAAUCG--GG 2041 |UUGAA--AG UGAAA----G UCGCCA-(-- --AAAAG)-U GGCGG----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------AA UGCUCUCGAA ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|C AAUUCAC-UU 2281 G-----AGUG -AG-ACAG-A -GGAGA--GU -----|GGAA UUUCGU-GUG ---UAGGG(G 2341 UGAAA)UCC- GUA---GAUC UACG-AAG-G AAC------- ----GCCAAA -AGC(-GAAG 2401 -)GC|A---- ----GCUCUC U-GGGUC-CC UA---CCGAC GCU--GGGGU GCGAA-AGCA 2461 U-GGG---GA GCGAACAGG( AUUAGAUAC) CCUG-GUAG| -UCCA-UGC- CGUAAA-CGA 2521 U--GAGU-GU |UC|GCCCUU GGU-cu(guc uacgcuacgc uacgc----- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)gg--AU CAGGGGC-CC AGC(UAAC)G CGUGAAACAC 2701 U-C|--C|GC C-UGGG-GAG UACGGUC(-- -GCAA--)GA CCG--AAACU CAAAGGAA-U 2761 UG|ACGGGG- GCCUGC---A CAAGCGGU|G GAGCAUGU-G |GUUUAA-UU CG(AUACAAC 2821 G--------- ----)CGCAA A-ACCUUACC AGCCCUUGAC AUAUGAA--- ---------- 2881 ---------- ---------- ---------- -------uUU-CA-U A--C---AGG UGC-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-CU CGU-|GUC(G --UGA)GAUG UUUGG(UCA- 3181 AGU)CCU-A- U-AACGAGCG AAA-CCCUCG -----UUUUG UGUUGCUG-- -----(---- 3241 --)--- ---|CGCA-U CAC-GAGGGA -CUGCCA-GU (GAGA-U)AC UGG-AGGAAG 3781 -----GUG-G GGAUGA-CGU C-AAGUCCGC A|UGGC|CCU UAU------- ---------G 3841 G-G-CU-GGG CC-ACA--CA -CGUGCUACA AU--GGCAAU G-ACAA-UGG GA--AGCAA- 3901 GGCU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UAA--)GGCG -GAGCG-AAU CCGG-AAAGA UUG-CCUCAG 4021 ---------- -----UUCGG --AUUGU-UC U-C(------ ---------- ---------- 4081 ---------- ---------- UGCAAc-uc) G-GG-A--AC -A--UGAAG- -UAGAAAUCG 4141 C-U--AGUAA U-CGCGGA(- UCAGC-AU-- --)GCCGCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--GUAC 4261 CCGGGC-CC- UGUACACA-C -CGCCCGUCA C-ACC--CUG GGA-auuggu uuc-GCCCGA 4321 Agcaucggac caauga-uca cccaugacu- ucuguguac- -(cacua-)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->gugccac aaaggccu-- uugguggucu uauuggcgca 4561 uaccacGGUg gggucUUCGA CUGG-GGU-G AAGUCGUAAC AAGGUAGC-C GUA-GG(GGA 4621 -A)CCU-GU- GGCUGGAUUG AAUCC----| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.E.virgi 5213 bp RNA RNA 19-DEC-1997 DEFINITION Mitochondrion Epifagus virginiana.; . ACCESSION U82642 KEYWORDS . SOURCE Mitochondrion Epifagus virginiana. ORGANISM Mitochondrion Epifagus virginiana. REFERENCE 1 (bases 1 to 1038) AUTHORS Duff,R.J. and Nickrent,D.L. TITLE Mutation rates and phylogenetic utility of mitochondrial SSU rDNA in holoparasitic plants JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1038) AUTHORS Duff,R.J. and Nickrent,D.L. TITLE Direct Submission JOURNAL Submitted (19-DEC-1996) Plant Biology, Southern Illinois University, Carbondale, IL 62901-6509, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U82642 BASE COUNT 271 a 233 c 325 g 209 t 4175 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~~~~~~~~ -~-~~~~-~~ |~~-~~--~~ ~~~~-~~~GC 721 -AAGUCG-AA CGUUG|UUUU CGAggag(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)cugggcag 841 aaggaaaagc ggcuccuagc -----uaa-- --ugucucgc ccag------ ---------- 901 ---------- ---------- ---------- --------ga gg----agg- --UGAGAA|C 961 A--AA-GU|G GCGAACGGGU GCGUAA--CG C|GUG-GGAA --UC---UGC CGAAC-AGUU 1021 CGGG------ ---c---(ca aa--)---u- ---------C CUGAAGA--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- -AAGCU(aaa 1141 a----)AGC- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUG UUUGAUGAG- --CCUGC-GU |--------- -AGUAUUA-- 1321 -GGUAGUUGG UC-AG(GUAA AGG------- ---------- ---------- ------)CUG 1381 ACCAA|---- GCCAA--UGA U|GCUUA-GC UG|---GUCU (UUUC--)GG ACGAUCAGC| 1441 CACACU-GGG AC(UGAGA-C AC-)GGCCCG G|ACUCC--( CACG-)--GG GGG----C-A 1501 GCA|GUG-GG GAAUCUUGGA C-AAUGGGC( ---------- ----GAAA)G CCC-A-UCC| 1561 A|-GCAA-U- AU-CGC---- -GUGAGUGAA --GAAG-GGC (-------aa ugcc------ 1621 --------)G CUUGUA-AAG -CUC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -----UUUCA UCGAGugcgc gau------- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- --------ca ugacaggACU CGAGGAAGAA GCCCC|-GGC 1921 -UAA-C---U CCGU-G(-CC AGCAGCC-GC -GGU-AA)-G ACGGGG|--- -GGG-GCA-- 1981 AGUGU-UCUU CGG--AAUGA CUGGGC|GUA AAGGGCACGU -A-GGCG|GU GAAUCG--GG 2041 |UUGAA--AG UGAAA----G UCGCCA-(-- --AAAAC)-U GGCGG----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------AA UGCUCUCGAA ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|C AAUUCAC-UU 2281 G-----AGUG -AG-ACAG-A -GGAGA--GU -----|GGAA UUUCGU-GUU ---UAGGG(G 2341 UGAAA)UCC- GGA---UAUC UACG-AAG-G AAC------- ----GCCAAA -AGC(-GAAG 2401 -)GC|A---- ----GCUCUC U-GGGUC-CC UA---CCGAC GCU--GGGGU GCGAA-AGCA 2461 U-GGG---GA GCGAACAGG( AUUAGAUAC) CCUG-GUAG| -UCCA-UGC- CGUAAA-CGA 2521 U--GAGU-GU |UC|GCCCUU GGU-cu(-ac gc-------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)gg--AU CAGGGGC-CC AGC(UAAC)G CGUGAAACAC 2701 U-C|--C|GC C-UGGG-GAG UACGGUC(-- -GCAA--)GA CCG--AAACU CAAAGGAA-U 2761 UG|ACGGGG- GCCUGC---A CAAGCGGU|G GAGCAUGU-G |GUUUAA-UU CG(AUACAAC 2821 G--------- ----)CGCAA A-ACCUUACC AGCCCUUGAC AUAUGAA--- ---------- 2881 ---------- ---------- ---------- -------<-a a-aaaaccug uccuuaac-- 2941 ---------- ---------- ---------- ----gggaug guacuuac-- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ->UUU-CA-U A--C---AGG UGU-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-CU CGU-|GUC(G --UGA)GAUG UUUGG(UCA- 3181 AGU)CCU-A- U-AACGAGCG AAA-CCCUCG -----UUUUG UGUUGC~~~~ ~~~~~(~~~~ 3241 ~~)<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~-- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~-~)~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~|~~~ ~~~------- -------~~~ 3841 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~<~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~>(~~~ ~~~-~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~-~(~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~) ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~)~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~- 4381 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~>~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.N.tabac 5213 bp RNA RNA 19-DEC-1997 DEFINITION Mitochondrion Nicotiana tabacum.; . ACCESSION U82638 KEYWORDS . SOURCE Mitochondrion Nicotiana tabacum. ORGANISM Mitochondrion Nicotiana tabacum. REFERENCE 1 (bases 1 to 1756) AUTHORS Duff,R.J. and Nickrent,D.L. TITLE Mutation rates and phylogenetic utility of mitochondrial SSU rDNA in holoparasitic plants JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1756) AUTHORS Duff,R.J. and Nickrent,D.L. TITLE Direct Submission JOURNAL Submitted (19-DEC-1996) Plant Biology, Southern Illinois University, Carbondale, IL 62901-6509, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U82638 BASE COUNT 450 a 408 c 538 g 360 t 3457 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~~~~~~~~ -~-~~~~-~~ |UG-CU--UA ACAC-A-UGC 721 -AAGUCG-AA CGUUG|UUUU CGGggag(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)cugggcag 841 aaggaaaaga ggcuccuagc -uaaagguag cuugucucgc ccag------ ---------- 901 ---------- ---------- ---------- --------ga ggugagaaga gUUGAGAA|C 961 A--AA-GU|G GCGAACGGGU GCGUAA--CG C|GUG-GGAA --UC---UGC CGAAC-AGUU 1021 CGGG------ ---c---(ca aa--)---u- ---------C CUGAAGA--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- -AAGCU(aaa 1141 a----)AGC- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUG UUUGAUGAG- --CCUGC-GU |--------- -AGUAUUA-- 1321 -GGUAGUUGG UC-AG(GUAA AGG------- ---------- ---------- ------)CUG 1381 ACCAA|---- GCCAA--UGA U|GCUUA-GC UG|---GUCU (UUUC--)GG AUGAUCAGC| 1441 CACACU-GGG AC(UGAGA-C AC-)GGCCCG G|ACUCC--( CACG-)--GG GGG----C-A 1501 GCA|GUG-GG GAAUCUUGGA C-AAUGGGC( ---------- ----GAAA)G CCCGA-UCC| 1561 A|-GCAA-U- AU-CGC---- -GUGAGUGAA --GAAG-GGC (-------aa ugcc------ 1621 --------)G CUUGUA-AAG -CUC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -----UUUCG UCGAGugcgc gau------- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- --------ca ugacaggACU CGAGGAAGAA GCCCC|-GGC 1921 -UAA-C---U CCGU-G(-CC AGCAGCC-GC -GGU-AA)-G ACGGGG|--- -GGG-GCA-- 1981 AGUGU-UCUU CGG--AAUGA CUGGGC|GUA AAGGGCACGU -A-GGCG|GU GAAUCG--GG 2041 |UUGAA--AG UGAAA----G CCGCCA-(-- --AAAAC)-U GGCGG----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------AA UGCUCUCGAA ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|C AAUUCAC-UU 2281 G-----AGUG -AG-ACAG-A -GGAGA--GU -----|GGAA UUUCGU-GUG ---UAGGG(G 2341 UGAAA)UCC- GGA---GAUC UACG-AAG-G AAG------- ----GCCAAA -AGC(-GAGG 2401 -)GC|A---- ----GCUCUC U-GGGUC-CC UA---CCGAC GCU--GAGGU GCGAA-AGCA 2461 U-GGG---GA GCGAACAGG( AUUAGAUAC) CCUG-GUAG| -UCCA-UGC- CGUAAA-CGA 2521 U--GAGU-GU |UC|GCCCUU GGU-cu(-ac gc-------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)gg--AU CAGGGGC-CC AGC(UAAC)G CGUGAAACAC 2701 U-C|--C|GC C-UGGG-GAG UACGGUC(-- -GCAA--)GA CCG--AAACU CAAAGGAA-U 2761 UG|ACGGGG- GCCUGC---A CAAGCGGU|G GAGCAUGU-G |GUUUAA-UU CG(AUACAAC 2821 G--------- ----)CGCAA A-ACCUUACC AGCCCUUGAC AUAUGAA--- ---------- 2881 ---------- ---------- ---------- -------UUU-CA-U A--C---AGG UGC-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-CU CGU-|GUC(G --UGA)GAUG UUUGG(UCA- 3181 AGU)CCU-A- U-AACGAGCG AAA-CCCUCG -----UUUUG UGUUGCUG-- -----(---- 3241 --)--- ---|CGCACU CAC-GAGGGA -CUGCCA-GU (GAUA-U)AC UGG-AGGAAG 3781 -----GUG-G GGAUGA-CGU C-AAGUCCGC A|UGGC|CCU UAU------- ---------G 3841 G-G-CU-GGG CC-ACA--CA -CGUGCUACA AU--GGCAAU U-ACAA-UGG GA--AGCAA- 3901 GGCU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UAA--)GGCG -GAGCG-AAU CCGG-AAAGA UUG-CCUCAG 4021 ---------- -----UUCGG --AUUGU-UC U-C(------ ---------- ---------- 4081 ---------- ---------- UGCAAc-uc) G-GG-A--AC -A--UGAAG- -UUGGAAUCG 4141 C-U--AGUAA U-CGCGGA(- UCAGC-AU-- --)GCCGCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--GUAC 4261 CCGGGC-CC- UGUACACA-C -CGCCCGUCA C-ACC--CUG GGA-auuggu uuc-gcccga 4321 agcaucggac caa-uga-uc acccaugac- uucuguguca -(cacua-)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->gugccac aaaggcuu-u ug-gugg~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.A.thali 5213 bp RNA RNA 17-JAN-1997 DEFINITION Mitochondrion Arabidopsis thaliana.; 18S ribosomal RNA; 26S ribosomal RNA; 5S ribosomal RNA; apocytochrome B; atp1 gene; atp6 gene; atp9 gene; ATPase subunit 1; ATPase subunit 6; ATPase subunit 9; ccb203 gene; ccb206 gene; ccb256 gene; ccb382 gene; ccb452 gene; cob gene; cox1 gene; cox2 gene; cox3 gene; cytochrome c biogenesis orf203; cytochrome c biogenesis orf206; cytochrome c biogenesis orf256; cytochrome c biogenesis orf382; cytochrome c biogenesis orf452; cytochrome c oxidase subunit 1; cytochrome c oxidase subunit 2; cytochrome c oxidase subunit 3; matR gene; maturase; nad1 gene; nad2 gene; nad3 gene; nad4 gene; nad4L gene; nad5 gene; nad6 gene; nad7 gene; nad9 gene; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; NADH dehydrogenase subunit 7; NADH dehydrogenase subunit 9; ORF25; orf25 gene; orfB; orfB gene; orfX gene; ribosomal protein L16; ribosomal protein L2; ribosomal protein L5; ribosomal protein S12; ribosomal protein S3; ribosomal protein S4; ribosomal protein S7; rpl16 gene; rpl2 gene; rpl5 gene; rps12 gene; rps3 gene; rps4 gene; rps7 gene; rrn18 gene; rrn28 gene; rrn5 gene; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-fMet; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Trp; transfer RNA-Tyr; trnC gene; trnD gene; trnE gene; trnfM gene; trnG gene; trnH gene; trnI gene; trnK gene; trnM gene; trnN gene; trnP gene; trnQ gene; trnS gene; trnW gene; trnY gene. ACCESSION Y08502 KEYWORDS 18S ribosomal RNA; 26S ribosomal RNA; 5S ribosomal RNA; apocytochrome B; atp1 gene; atp6 gene; atp9 gene; ATPase subunit 1; ATPase subunit 6; ATPase subunit 9; ccb203 gene; ccb206 gene; ccb256 gene; ccb382 gene; ccb452 gene; cob gene; cox1 gene; cox2 gene; cox3 gene; cytochrome c biogenesis orf203; cytochrome c biogenesis orf206; cytochrome c biogenesis orf256; cytochrome c biogenesis orf382; cytochrome c biogenesis orf452; cytochrome c oxidase subunit 1; cytochrome c oxidase subunit 2; cytochrome c oxidase subunit 3; matR gene; maturase; nad1 gene; nad2 gene; nad3 gene; nad4 gene; nad4L gene; nad5 gene; nad6 gene; nad7 gene; nad9 gene; NADH dehydrogenase subunit 1; NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3; NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L; NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6; NADH dehydrogenase subunit 7; NADH dehydrogenase subunit 9; ORF25; orf25 gene; orfB; orfB gene; orfX gene; ribosomal protein L16; ribosomal protein L2; ribosomal protein L5; ribosomal protein S12; ribosomal protein S3; ribosomal protein S4; ribosomal protein S7; rpl16 gene; rpl2 gene; rpl5 gene; rps12 gene; rps3 gene; rps4 gene; rps7 gene; rrn18 gene; rrn28 gene; rrn5 gene; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-fMet; transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Trp; transfer RNA-Tyr; trnC gene; trnD gene; trnE gene; trnfM gene; trnG gene; trnH gene; trnI gene; trnK gene; trnM gene; trnN gene; trnP gene; trnQ gene; trnS gene; trnW gene; trnY gene. SOURCE Mitochondrion Arabidopsis thaliana. ORGANISM Mitochondrion Arabidopsis thaliana. REFERENCE 1 (bases 1 to 166924) AUTHORS Unseld,M., Marienfeld,J.R., Brandt,P. and Brennicke,A. TITLE The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366924 nucleotides JOURNAL Nature Genet. In press STANDARD No information REFERENCE 2 (bases 1 to 166924) AUTHORS Marienfeld,J.R. TITLE Direct Submission JOURNAL Submitted (30-SEP-1996) J.R. Marienfeld, Institut fuer Genbiologische Forschung GmbH, Ihnestrasse 63, 14195 Berlin, FRG STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Y08502 Related sequences: X96535, X96536, X91201-X91210, X72616, X67736, X65123, X67105, X60045, X60047, X60048, M58320, X07376, X94583, X82565, U49402 & U49403. BASE COUNT 501 a 441 c 593 g 400 t 3278 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------a ucauagucaa aagaaGAGUU 661 (UGA-)U-CC U|GGCUC-AG AAGGAACGCU -A-GCUA-UA |UG-CU--UA ACAC-A-UGC 721 -AAGUCG-AA CGUUG|UUCU CGGGGAG(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)cuaggcag 841 aaggaaaaga ggcuccuagc -ucaagguag cuugucucgc ccag------ ---------- 901 ---------- ---------- ---------- --------ga ggcgggaaga gUUGAGAA|C 961 A--AA-GU|G GCGAACGGGU GCGUAA--GG C|GUG-GGAA --UC---UGC CGAAC-AGUU 1021 CGGG------ ---c---(ca aa--)---u- ---------C CUGAAGA--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- -AAGCU(aaa 1141 a----)AGC- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUG UUUGAUGAG- --CCUGC-GU |--------- -AGUAUUA-- 1321 -GGUAGUUGG UU-AG(GUAA AGG------- ---------- ---------- ------)CUG 1381 ACCAA|---- GCCAA--UGA U|GCUUA-GC UG|---GUCU (UUUC--)GG AUGAUCAGC| 1441 CACACU-GGG AC(UGAGA-C AC-)GGCCCG G|ACUCC--( CACG-)--GG GGG----C-A 1501 GCA|GUG-GG GAAUCUUGGA C-AAUGGGC( ---------- ----GAAA)G CC-GA-UCC| 1561 A|-GCAA-U- AU-CGC---- -GUGAGUGAA --GAAA-GGC (-------aa ugcc------ 1621 --------)G CUUGUA-AAG -CUC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -----UUUCG UCGAGugcgc gau------- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- --------ca ugacaggACU CGAGGAAGAA GCCCC|-GGC 1921 -UAA-C---U CCGU-G(-CC AGCAGCC-GC -GGU-AA)-A ACGGGG|--- -GGG-GCA-- 1981 AGUGU-UCUU CGG--AAUGA CUGGGC|GUA AAGGGCACGU -A-GGCG|GU GAAUCG--GG 2041 |UUGAA--AG UGAAA----G UCGCCA-(-- --AAAAG)-U GGCGG----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------AA UGCUUUCGAA ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|C AAUUCAC-UU 2281 G-----AGUG -AG-ACAG-A -GGAGA--GU -----|GGAA UUUCGU-GUG ---GAGGG(G 2341 UGAAA)UCU- ACA---GAUC UACG-AAG-G AAC------- ----GCCAAA -AGC(-GAAG 2401 -)GC|A---- ----GCUCUC U-GGGUC-CC UA---CCGAC GCU-gGGGGU GCGAA-AGCA 2461 UgGGG---GA GCGAACGGG( AUUAGAUAC) CCUG-GUAG| -UCCA-UGC- CGUAAA-CGA 2521 U--GAGU-GU |UC|GCCCUU GGU-cu(-ac gc-------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)ag--AU CAGGGGC-UC AGC(UAAC)G CGUGA-ACAC 2701 U-C|--C|GC C-UGGG-GAG UACGGUC(-- -GCAA--)GA CCA--AAACU CAAAGGAA-U 2761 UG|ACGGGG- GCCUGC---A CAAGCGGU|G GAGCAUGU-G |GUUUAA-UU CG(AUACAAC 2821 G--------- ----)CGCAA A-ACCUUACC AGCCCUUGAC AUAUGAA--- ---------- 2881 ---------- ---------- ---------- -------UUU-CA-U A--C---AGG UGC-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-CU CGU-|GUC(G --UGA)GAUG UUUGG(UCA- 3181 AGU)CCU-A- U-AACGAGCG AAA-CCCUCG -----UCUUG UGUUGCUC-- -----(---- 3241 --)--- ---|CGCACU CAC-GAGGGA -CUGCCA-GU (GAUA-U)AC UGG-AGGAAG 3781 -----GUG-G GGAUGA-CGU C-AAGUCCGC A|UGGC|CCU UAU------- ---------G 3841 G-G-CU-GGG CC-ACA--CA -CGUGCUACA AU--GGCAAU U-ACAA-UGG GA--AGCAA- 3901 GGCU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UAA--)GGCG -GAGCG-AAU CCGG-AAAGA UUG-CCUCAG 4021 ---------- -----UUCGG --AUUGU-UC U-C(------ ---------- ---------- 4081 ---------- ---------- UGCAAc-uc) G-GG-A--AC -A--UGAAG- -UUGGAAUCG 4141 C-U--AGUAA U-CGCGGA(- UCAGC-AU-- --)GCCGCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--GUAC 4261 CCGGGC-CC- UGUACACA-C -CGCCCGUCA C-ACC--CUG GGA-auuggu uuc-GCCCGA 4321 Agcaucggac caa-uga-uc acccaugac- uucuguguac -(cacua-)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->gugccac aaaggcuu-u ug-guggucu uauuggcgca 4561 uaccacGGUg gggucUUCGA CUGG-GGU-G AAGUCGUAAC AAGGUAGC-C GUA-GG(GGA 4621 -A)CCU-GU- GGCUGGAUUG AAUCC----| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.max.1 5213 bp RNA RNA ~?~???? DEFINITION mitochondria,Glycine max(soybean) 18S. ACCESSION No information KEYWORDS No information. SOURCE mitochondria,Glycine max(soybean) 18S. ORGANISM mitochondria,Glycine max(soybean) 18S. REFERENCE 1 (bases 1 to 166924) AUTHORS No information JOURNAL 119-124(1985) STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5213) Corresponding GenBank entry: M16859 Phylo:Mitochondria,Plant,Glycine BASE COUNT 501 a 453 c 610 g 426 t 3223 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------a ucauacucaa aauaaGAGUU 661 (UGA-)U-CC U|GGCUC-AG AAGGAACGCU -A-GCUA-UA |UG-CU--UA ACAC-A-UGC 721 -AAGUCG-AA CGUUG|UUUU CGGggag(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)cugggcag 841 aaggaaaaga ggcuccuagc gugaagguug cuugucucgc ccag------ ---------- 901 ---------- ---------- ---------- --------ga ggugggaaca gUUGAAAA|C 961 A--AA-GU|G GCGAACGGGU GCGUAA--UG C|GUG-GGAA --UC---UGC CGAAC-AGUU 1021 CGGG------ ---c---(ca aa--)---u- ---------C CUGAAGA--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- -AAGCU(aaa 1141 a----)AGC- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUG UUUGAUGAG- --CCUGC-GU |--------- -AGUAUUA-- 1321 -GGUAGUUGG UC-AG(GUAA AGG------- ---------- ---------- ------)CUG 1381 ACCAA|---- GCCAA--UGA U|GCUUA-GC UG|---GUCU (UUUC--)GG AUGAUCAGC| 1441 CACACU-GGG AC(UGAGA-C AC-)GGCCCG G|ACUCC--( CACG-)--GG GGG----C-A 1501 GCA|GUG-GG GAAUCUUGGA C-AAUGGGC( ---------- ----GAAA)G CCCGA-UCC| 1561 A|-GCAA-U- AU-CGC---- -GUGAGUGAA --GAAG-GGC (-------aa ugcc------ 1621 --------)G CUUGUA-AAG -CUC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -----UUUCG UCGAGugcgc gau------- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- --------ca ugacaggACU CGAGGAAGAA GCCCC|-GGC 1921 -UAA-C---U CCGU-G(-CC AGCAGCC-GC -GGU-AA)-G ACGGGG|--- -GGG-GCA-- 1981 AGUGU-UCUU CGG--AAUGA CUGGGC|GUA AAGGGCACGU -A-GGCG|GU GAAUCG--GG 2041 |UUGAA--AG UGAAA----G UCGCCA-(-- --AAAAC)-U GGUGG----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------AA UGCUCUCGAA ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|C AAUUCAC-UU 2281 G-----AGUG -AG-ACAG-A -GGAGA--GU -----|GGAA UUUCGU-GUG ---UAGGG(G 2341 UGAAA)UCC- GCA---GAUC UACG-AAG-G AAC------- ----GCCAAA -AGC(-GAAG 2401 -)GC|A---- ----GCUCUC U-GGGUC-CC UA---CCGAC GCU--GGAGU GCGAA-AGCA 2461 U-GGG---GA GCGAACGGG( AUUAGAUAC) CCUG-GUAG| -UCCA-UGC- CGUAAA-CGA 2521 U--GAGU-GU |UC|GCCCUU GGU-cu(-ac gu-------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)gg--AU CAGGGGC-CC AGC(UAAC)G CGUGAAACAC 2701 U-C|--C|GC C-UGGG-GAG UACGGUC(-- -GCAA--)GA CCG--AAACU CAAAGGAA-U 2761 UG|ACGGGG- GCCUGC---A CAAGCGGU|G GAGCAUGU-G |GUUUAA-UU CG(AUACAAC 2821 G--------- ----)CGCAA A-ACCUUACC AGCCCUUGAC AUAUGAA--- ---------- 2881 ---------- ---------- ---------- -------uUU-CA-U A--C---AGG UGC-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-CU CGU-|GUC(G --UGA)GAUG UUUGG(UCA- 3181 AGU)CCU-A- U-AACGAGCG AAA-CCCUCG -----UUUUG UGUUGCUG-- -----(---- 3241 --)--- ---|CGCACU CAC-GAGGGA -CUGCCA-GU (GAUA-U)AC UGG-AGGAAG 3781 -----GUG-G GGAUGA-CGU C-AAGUCCGC A|UGGC|CCU UAU------- ---------G 3841 G-G-CU-GGG CC-ACA--CA -CGUGCUACA AU--GGCAAU U-ACAA-UGG GA--AGCAA- 3901 GGCU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UAA--)GGCG -GAGCG-AAU CCGG-AAAGA UUG-CCUCAG 4021 ---------- -----UUCGG --AUUGU-UC U-C(------ ---------- ---------- 4081 ---------- ---------- UGCAAc-uc) G-GG-A--AC -A--UGAAG- -UUGGAAUCG 4141 C-U--AGUAA U-CGCGGA(- UCAGC-AU-- --)GCCGCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--GUAC 4261 CCGGGC-CC- UGUACACA-C -CGCCCGUCA C-ACC--CUG GGA-auuggu uuc-gcccga 4321 agcaucggac caauga-uca cccaugacu- ucuguguac- -(cacua-)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->gugccac aaaggcuu-- uugguggucu uauuggcgca 4561 uaccacggug gggucUUCGA CUGG-GGU-G AAGUCGUAAC AAGGUAGC-C GUA-GG(GGA 4621 -A)CCU-GU- GGCUGGAUGG AAUCC----| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.G.max.2 5213 bp RNA RNA 10-APR-1991 DEFINITION Mitochondrion Glycine max.; 18S ribosomal RNA; 5S ribosomal RNA; ribosomal RNA; unidentified reading frame. ACCESSION X00835 KEYWORDS 18S ribosomal RNA; 5S ribosomal RNA; ribosomal RNA; unidentified reading frame. SOURCE Mitochondrion Glycine max. ORGANISM Mitochondrion Glycine max. REFERENCE 1 (bases 1 to 1794) AUTHORS Morgens,P.H., Grabau,E.A. and Gesteland,R.F. TITLE rearrangement involving the 5S rRNA gene A novel soybean mitochondrial transcript resulting from a DNA JOURNAL Nucleic Acids Res. 12 (14), 5665-5684 (1984) STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X00835 BASE COUNT 173 a 175 c 225 g 177 t 4463 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~~~~~~~~ -~-~~~~~~~ |~~-~~--~~ ~~~~-~~~~~ 721 -~~~~~~-~~ ~~~~~|~~~~ ~~~~~~~(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------~~~~ ~)~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ 961 ~~~~~-~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 1141 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~)~~~ 1381 ~~~~~|-~~~ ~~~~~~~~~~ ~|~~~~~-~~ ~~|~~~~~~~ (~~~~~~)~~ ~~~~~~~~~| 1441 ~~~~~~~~~~ ~~(~~~~~-~ ~-~)~~~~~~ ~|~~~~~~~( ~~~~~)~~~~ ~~~~~~~~-~ 1501 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~| 1561 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1921 ~~~~~~~~~~ ~~~~~~(-~~ ~~~~~~~~~~ ~~~~~~~)~~ -~~~~~|~~~ ~~~~~~~~~~ 1981 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ -~~~~~~|~~ ~~~~~~~~~~ 2041 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2341 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 2401 ~)~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ 2461 ~~~~~~--~~ ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~-~~ |~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ 2701 ~~~|~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ 2821 ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~---~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~>~~~~~~~~ ~~~~~~~~~~ ~~~-~~|~~~ 3121 |~~|~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~(~ ~-~~~)~~~~ ~~~~~(~~~- 3181 ~~~)~~~-~- ~-~~~~~~~~ ~~~-~~~~~~ -----~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 3241 ~~)<~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -gaauucgaa gcacuuucua gugugcgcug 3421 uuuuuugauu gcagcuagcg agcaagaaaa cggaugcgc- --------(g aac---)--- 3481 -------gcg gcuuucuuuc g--------- ---ccuugcu uguugcuuua cuaaauagaa 3541 agaaagggcu uuucucgcuu guuuaguaaa guccaguuuu uggccuuauc uugcagguga 3601 cgacgacguc gaguuggcgg cggagaaaga cucggcauuc aggugagccg cccgguggug 3661 (ugg)uacgu aguggguuua guacgccccg ccaaaacggc uccgaaacaa acgaaaaggu 3721 gcaugc>--- ---|CGCACU CAC-GAGGGA -CUGCCA-GU (GAUA-U)AC UGG-AGGAAG 3781 -----GUG-G GGAUGA-CGU C-AAGUCCGC A|UGGC|CCU UAU------- ---------G 3841 G-G-CU-GGG CC-ACA--CA -CGUGCUACA AU--GGCAAU U-ACAA-UGG GA--AGCAA- 3901 GGCU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UAA--)GGCG -GAGCG-AAU CCGG-AAAGA UUG-CCUCAG 4021 ---------- -----UUCGG --AUUGU-UC U-C(------ ---------- ---------- 4081 ---------- ---------- UGCAAc-uc) G-GG-A--AC -A--UGAAG- -UUGGAAUCG 4141 C-U--AGUAA U-CGCGGA(- UCAGC-AU-- --)GCCGCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--GUAC 4261 CCGGGC-CC- UGUACACA-C -CGCCCGUCA C-ACC--CUG GGA-auuggu uuc-gcccga 4321 agcaucggac caauga-uca cccaugacu- ucuguguac- -(cacua-)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->gugccac aaaggcuu-- uugguggucu uauuggcgca 4561 uaccacggug gggucUUCGA CUGG-GGU-G AAGUCGUAAC AAGGUAGC-C GUA-GG(GGA 4621 -A)CCU-GU- GGCUGGAUGG AAUCC----| uucgcgaugg ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.L.luteu 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Lupinus luteus. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Lupinus luteus. ORGANISM Mitochondrion Lupinus luteus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: Z11512 DEFINITION L.luteus genes for 5S and 18S ribosomal RNA SOURCE Lupinus luteus DNA. ORGANISM Lupinus luteus Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Rosidae; Rosales; Fabaceaea. REFERENCE 1 (bases 1 to 2896) AUTHORS Augustyniak,H. JOURNAL Unpublished (1991) REFERENCE 2 (bases 1 to 2462) AUTHORS Martin,R., Schwob,E., Augustyniak,H., Makalowski,W., Stiegler,P. and Dirheimer,G. TITLE The organization of 18S rRNA gene of lupine mitochondria JOURNAL Unpublished (1992) REFERENCE 3 (bases 2301 to 2896) AUTHORS Martin,R., Schwob,E., Augustyniak,H., Makalowski,W., Stiegler,P. and Dirheimer,G. TITLE Organization and structure of 5S rRNA gene from lupine mitochondria JOURNAL Unpublished (1992) COMMENT *source: strain=cv. Topaz; *source: stage=seedling; From EMBL entry LL5S18SRR; dated 28-FEB-1992. FEATURES Location/Qualifiers rRNA 390..2412 /product="18S rRNA" /citation=[1] /citation=[2] /citation=[3] rRNA 2603..2721 /product="5S rRNA" /citation=[1] /citation=[3] BASE COUNT 511 a 455 c 608 g 449 t 3190 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------a ucauacucaa aagaaGAGUU 661 (UGA-)U-CC U|GGCUC-AG AAGGAACGCU -A-GCUA-UA |UG-CU--UA ACAC-A-UGC 721 -AAGUCG-AA CGUUG|UUUU CGGggag(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)cugggcag 841 aaggaaaaga ggcuccuagc gugaagguag cuugucucgc ccag------ ---------- 901 ---------- ---------- ---------- --------ga ggugggaaca gUUGAAAA|C 961 A--AA-GU|G GCGAACGGGU GCGUAA--UG C|GUG-GGAA --UC---UGC CGAAC-AGUU 1021 CGGG------ ---c---(ca aa--)---u- ---------C CUGAAGA--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- -AAGCU(AAA 1141 A----)AGC- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUG UUUGAUGAG- --CCUGC-GU |--------- -AGUAUUA-- 1321 -GGUAGUUGG UC-AG(GUAA AGG------- ---------- ---------- ------)CUG 1381 ACCAA|---- GCCAA--UGA U|GCUUA-GC UG|---GUCU (UUUC--)GG AUGAUCAGC| 1441 CACACU-GGG AC(UGAGA-C AC-)GGCCCG G|ACUCC--( CACG-)--GG GGG----C-A 1501 GCA|GUG-GG GAAUCUUGGA C-AAUGGGC( ---------- ----GAAA)G CCCGA-UCC| 1561 A|-GCAA-U- AU-CGC---- -GUGAGUGAA --GAAG-GGC (-------aa ugcc------ 1621 --------)G CUUGUA-AAG -CUC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -----UUUCG UCGAGugcgc gau------- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- --------ca cgacaggACU CGAGGAAGAA GCCCC|-GGC 1921 -UAA-C---U CCGU-G(-CC AGCAGCC-GC -GGU-AA)-G ACGGGG|--- -GGG-GCA-- 1981 AGUGU-UCUU CGG--AAUGA CUGGGC|GUA AAGGGCACGU -A-GGCG|GU GAAUCG--GG 2041 |UUGAA--AG UGAAA----G UCGCCA-(-- --AAAAC)-U GGUGG----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------AA UGCUCUCGAA ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|C AAUUCAC-UU 2281 G-----AGUG -AG-ACAG-A -GGAGA--GU -----|GGAA UUUCGU-GUG ---UAGGG(G 2341 UGAAA)UCC- GCA---GAUC UACG-AAG-G AAG------- ----GCCAAA -AGC(-GAAG 2401 -)GC|A---- ----GCUCUC U-GGGUC-CC UA---CCGAC GCU--GGAGU GCGAA-AGCA 2461 U-GGG---GA GCGAACGGG( AUUAGAUAC) CCUG-GUAG| -UCCA-UGC- CGUAAA-CGA 2521 U--GAGU-GU |UC|GCCCUU GGU-cu(-ac gu-------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)gg--AU CAGGGGC-CC AGC(UAAC)G CGUGAAACAC 2701 U-C|--C|GC C-UGGG-GAG UACGGUC(-- -GCAA--)GA CCG--AAACU CAAAGGAA-U 2761 UG|ACGGGG- GCCUGC---A CAAGCGGU|G GAGCAUGU-G |GUUUAA-UU CG(AUACAAC 2821 G--------- ----)CGCAA A-ACCUUACC AGCCCUUGAA AUAUGAA--- ---------- 2881 ---------- ---------- ---------- -------uUU-CA-U A--C---AGG UGC-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-CU CGU-|GUC(G --UGA)GAUG UUUGG(UCA- 3181 AGU)CCU-A- U-AACGAGCG AAA-CCCUCG -----UUUUG UGUUGCUG-- -----(---- 3241 --)--- ---|CGCACU CAC-GAGGGA -CUGCCA-GU (GAUA-U)AC UGG-AGGAAG 3781 -----GUG-G GGAUGA-CGU C-AAGUCCGC A|U-GC|CCU UAU------- ---------G 3841 G-G-CU-GGG CC-ACA--CA -CGUGCUACA AU--GGCAAU U-ACAA-UGG GA--AGCAA- 3901 GGCU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UAA--)GGCG -GAGCG-AAU CCGG-AAAGA UUG-CCUCAG 4021 ---------- -----UUCGG --AUUGU-UC U-C(------ ---------- ---------- 4081 ---------- ---------- UGCAAc-uc) G-GG-A--AC -A--UGAAG- -UUGGAAUCG 4141 C-U--AGUAA U-CGCGGA(- UCAGC-AU-- --)GCCGCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--GUAC 4261 CCGGGC-CC- UGUACACA-C -CGCCCGUCA C-ACC--CUG GgA-auuggu uuc-gcccga 4321 agcaucggac caauga-uca cccaugacu- ucuguguac- -(cacua-)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->gugccac aaaggcuu-- uugguggucu ucuuggcgca 4561 uaccacggug gggucUUCGA CUGG-GGU-G AAGUCGUAAC AAGGUAGC-C GUA-GG(GGA 4621 -A)CCU-GU- GGCUGGAUUG AAUCC----| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.O.berte 5213 bp RNA RNA 10-JAN-1985 DEFINITION Mitochondrion Oenothera berteriana. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Oenothera berteriana. ORGANISM Mitochondrion Oenothera berteriana. REFERENCE 1 (bases 1 to 1794) AUTHORS No information JOURNAL 404-410(1985)******* STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5213) Corresponding GenBank entry: X61277 Phylo:Mitochondria,Plant,Oenothera BASE COUNT 478 a 440 c 588 g 394 t 3313 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------a ucauagucaa aagaaGAGUU 661 (UGA-)U-CC U|GGCUC-AG AAGGAACGCU -A-GCUA-UA |UG-CU--UA ACAC-A-UGC 721 -AAGUCG-AA CGUUG|UUUU CGGggag(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)cugggcag 841 aaggaaaaga ggcuccuagc guu-aguccg cuugucucgc ccaac----- ---------- 901 ---------- ---------- ---------- -----auguu ggugggaaca gUUGAGAA|C 961 A--AA-GU|G GCGAACGGGU GCGUAA--CG C|GUG-GGAA --UC---UGC CGAAC-AGUU 1021 CGGG------ ---c---(ca aa--)---u- ---------C CUGAAGA--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- -AAGCU(aaa 1141 a----)AGC- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUG UUUGAUGAG- --CCUGC-GU |--------- -AGUAUUA-- 1321 -GGUAGUUGG UC-AG(GUAA AGG------- ---------- ---------- ------)CUG 1381 ACCAA|---- GCCAA--UGA U|GCUUA-GC UG|---GUCU (UUUC--)GG AUGAUCAGC| 1441 CACACU-GGG AC(UGAGA-C AC-)GGCCCG G|ACUCC--( CACG-)--GG GGG----C-A 1501 GCA|GUG-GG GAAUCUUGGA C-AAUGGGC( ---------- ----GAAA)G CCCGA-UCC| 1561 A|-GCAA-U- AU-CGC---- -GUGAGUGAA --GAAG-GGC (-------aa ugcc------ 1621 --------)G CUUGUA-AAG -CUC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -----UUUCG UCGAGugcgc gau------- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- --------ca ugacaggACU CGAGGAAGAA GCCCC|-GGC 1921 -UAA-C---U CCGU-G(-CC AGCAGCC-GC -GGU-AA)-G ACGGGG|--- -GGG-GCA-- 1981 AGUGU-UCUU CGG--AAUGA CUGGGC|GUA AAGGGCACGU -A-GGCG|GU GAAUCG--GG 2041 |UUGAA--AG UGAAA----G UCGCCA-(-- --AAAAC)-U GGCGG----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------AA UGCUCUCGAA ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|C AAUUCAC-UU 2281 G-----AGUG -AG-ACAG-A -GGAGA--GU -----|GGAA UUUCGU-GUG ---UAGGG(G 2341 UGAAA)UCC- GGA---GAUC UACG-AAG-G AAC------- ----GCCAAA -AGC(-GAAG 2401 -)GC|A---- ----GCUCUC U-GGGUC-CC UA---CCGAC GCU--GGGGU GCGAA-AGCA 2461 U-GGG---GA GCGAACGGG( AUUAGAUAC) CCUG--UAG| -UCCA-UGC- CGUAAA-CGA 2521 U--GAGU-GU |UC|GCCCUU GGU-cu(-ac gc-------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)gg--AU CAGGGGC-CC AGC(UAAC)G CGUGAAACAC 2701 U-U|--C|GC C-UGGG--AG UACGGUC(-- -GCAA--)GA CCG--AAACU CAAAGGAA-U 2761 UG|ACGGGG- GCCUGC---A CAAGCGGU|G GAGCAUGU-G |GUUUAA-UU CG(AUACAAC 2821 G--------- ----)CGCAA A-ACCUUACC AGCCCUUGAC AUAUGAA--- ---------- 2881 ---------- ---------- ---------- -------uUU-CA-U A--C---AGG UGC-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-CU CGU-|GUC(G --UGA)GAUG UUUGG(UCA- 3181 AGU)CCU-U- U-AACGAGCG AAA-CCCUCG -----UUUUG UGUUGCUG-- -----(---- 3241 --)--- ---|CGCACU CAC-GAGGGA ACUGCCA-GU (GAUA-U)AC UGG-AGGAAG 3781 -----GUG-G GGAUGA-CGU C-AAGUCCGC A|U-GC|CCU UAU------- ---------G 3841 G-G-CU-GGG CC-ACA--CA -CGUGCUACA AU--GGCAAU U-ACAA-UGG GA--AGCAA- 3901 GGCU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UAA--)G-CG -GAGCG-AAU CCGG-AAAGA UUG-CCUCAG 4021 ---------- -----UUCGG --AUUGU-UC U-C(------ ---------- ---------- 4081 ---------- ---------- UGCAAc-uc) G-GG-A--AC -A--UGAAG- -UUGGAAUCG 4141 C-U--AGUAA U-CGCGGA(- UCAGC-AU-- --)GCCGCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--GUAC 4261 CCGGGC-CC- UGUACACA-C -CGCCCGUCA C-ACC--CUG GGA-auuggu uuc-gcccga 4321 agcaucggac caauga-uca cccaugacu- ucuguguac- -(cacua-)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->gugccac aaaggcuu-- uugguggucu uauuggcgca 4561 uaccacggug gggucUUCGA CUGG-GGU-G AAGUCGUAAC AAGGUAGC-C GUA-GG(GGA 4621 -A)CCU-GU- GGCUGGAUUG AAUCC----| ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---------- 5101 ---------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- --------|| ||| // LOCUS mt.L.chile 5213 bp RNA RNA 19-DEC-1997 DEFINITION Mitochondrion Lepidoceras chilense.; . ACCESSION U82641 KEYWORDS . SOURCE Mitochondrion Lepidoceras chilense. ORGANISM Mitochondrion Lepidoceras chilense. REFERENCE 1 (bases 1 to 1830) AUTHORS Duff,R.J. and Nickrent,D.L. TITLE rDNA in holoparasitic plants Mutation rates and phylogenetic utility of mitochondrial SSU JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1830) AUTHORS Duff,R.J. and Nickrent,D.L. TITLE Direct Submission JOURNAL Submitted (19-DEC-1996) Plant Biology, Southern Illinois University, Carbondale, IL 62901-6509, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U82641 BASE COUNT 469 a 417 c 567 g 377 t 3383 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~~~~~~~~ -~-~~~~-~~ |~~-~~--~~ ~~~~-~~~GC 721 -AAGUCG-AA CGUUG|UUUU CGAggag(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)cugggcag 841 aaggaaaaga ggcuccuagc -uaaagguag cuugucucgc ccag------ ---------- 901 ---------- ---------- ---------- --------ga ggugggaaga gUUGAGAA|C 961 A--AA-GU|G GCGAACGGGU GCGUAA--UG C|GUG-GGAA --UC---UGC CGAAC-AGUU 1021 CGGG------ ---c---(ca aa--)---u- ---------C CUGAAGA--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- -AAGCU(aaa 1141 a----)AGC- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUG UUUGAUGAG- --CCUGC-GU |--------- -AGUAUUA-- 1321 -GGUAGUUGG UC-AG(GUAA AGG------- ---------- ---------- ------)CUG 1381 ACCAA|---- GCCAA--UGA U|GCUUA-GC UG|---GUCU (UUUC--)GG AUGAUCAGC| 1441 CACACU-GGG AC(UGAGA-C AC-)GGCCCG G|ACUCC--( CACG-)--GG GGG----C-A 1501 GCA|GUG-GG GAAUCUUG-A C-AAUGGGC( ---------- ----GAAA)G CCUGA-UCC| 1561 A|-GCAA-U- AU-CGC---- -GUGAGUGAA --GAAG-GGC (-------aa ugcc------ 1621 --------)G CUUGUA-AAG -CUC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -----UUUCG UCGAGugcgc gau------- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- --------ca ugacaggACU CGAGGAAGAA GCCCC|-GGC 1921 -UAA-C---U CCGU-G(-CC AGCAGCC-GC -GGU-AA)-G ACGGGG|--- -GGG-GCA-- 1981 AGUGU-UCUU CGG--AAUGA CUGGGC|GUA AAGGGCACGU -A-GGCU|GU GAAUCG--GG 2041 |UUGAA--AG UGAAA----G UCGCCA-(-- --AAAAC)-U GGUGG----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------AA AGCUCUCGAA ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|C AAUUCAC-UU 2281 G-----AGUG -AG-ACAG-A -GGAGA--GU -----|GGAA UUUCGU-GUG ---UAGGG(G 2341 UAAAA)UCC- GGA---GAUC UACG-AAG-G AAC------- ----GCCAAA -AGC(-GAAG 2401 -)GC|A---- ----GCUCUC U-GGGUC-CC UA---CCGAC GCU--GGGGU GCGAA-AGCA 2461 U-GGG---GA GCGAACGGG( AUUAGAUAC) CCUG-GUAG| -UCCA-UGC- CGUAAA-CGA 2521 U--GAGU-GU |UC|GCCCUU GGU-cu(-ac gc-------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)gg--AU CAGGGGC-CC AGC(UAAC)G CGUGAAACAC 2701 U-C|--C|GC C-UGGG-GAG UACGGUC(-- -GCAA--)GA CCG--AAACU CAAAGGAA-U 2761 UG|ACGGGG- GCCUGC---A CAAGCGGU|G GAGCAUGU-G |GUUUAA-UU CG(AUACAAC 2821 G--------- ----)CGCAA A-ACCUUACC AGCCCUUGAC AUAUGAA--- ---------- 2881 ---------- ---------- ---------- -------UUU-CA-U A--C---AGG UGC-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-CU CGU-|GUC(G --UGA)GAUG UUUGG(UCA- 3181 AGU)CCU-A- U-AACGAGCG AAA-CCCUCG -----UUUUG UGUUGCUG-- -----(---- 3241 --)--- ---|-GCACU CAC-GAGGGA -CUGCCA-GU (GAUA-U)AC UGG-AGGAAG 3781 -----GUG-G GGAUGA-CGU C-AAGUCCGC A|UGGC|CCU UAU------- ---------G 3841 G-G-CU-GGG CC-ACA--CA -CGUGCUACA AU--GGCAAU U-ACAA-UGG GA--AGCAA- 3901 GGCU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UAA--)GGCG -GAGCG-AAU CCGG-AAAGA UUG-CCUCAG 4021 ---------- -----UUCGG --AUUGU-UC U-C(------ ---------- ---------- 4081 ---------- ---------- UGCAAc-uc) G-GG-A--AC -A--UGAAG- -UUGGAAUCG 4141 C-U--AGUAA U-CGCGGA(- UCAGC-AU-- --)GCCGCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--GUAC 4261 CCGGGC-CC- UGUACACA-C -CGCCCGUCA C-ACC--CUG GGA-auuggu uuc-gcccga 4321 agcaucggac caa-uga-uc acccaugac- uucuguguac -(cacua-)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->gugccac aaaggcuu-u ug-guggucu uauuggcgca 4561 uaccacggug gggucUUCGA CUGG-GGU-G AAGUCGUAAC AAGGUAG~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.H.cayen 5213 bp RNA RNA 19-DEC-1997 DEFINITION Mitochondrion Helosis cayennensis.; . ACCESSION U82640 KEYWORDS . SOURCE Mitochondrion Helosis cayennensis. ORGANISM Mitochondrion Helosis cayennensis. REFERENCE 1 (bases 1 to 1748) AUTHORS Duff,R.J. and Nickrent,D.L. TITLE rDNA in holoparasitic plants Mutation rates and phylogenetic utility of mitochondrial SSU JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1748) AUTHORS Duff,R.J. and Nickrent,D.L. TITLE Direct Submission JOURNAL Submitted (19-DEC-1996) Plant Biology, Southern Illinois University, Carbondale, IL 62901-6509, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U82640 BASE COUNT 443 a 419 c 523 g 363 t 3465 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~~~~~~~~ -~-~~~~-~~ |~~-~~--~~ ~~~~-~~~GC 721 -AAGUCG-AA CGUUG|UUUU CGG-uaa(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)acggaugu 841 acgga---gu ucu--cuagc gucgugagag cu-gcgaaca ggcggagaac ugcguucucc 901 auuggagaac uacgugccuu cggcuggacu ccgugcau-a ggu---cg-- guUGAGAA|C 961 A--AA-GU|G GCGAACGGGU GCGUAA--CG C|GUG-GGAA --UC---UGC CGAAC-AGUU 1021 CGGG------ ---c---(ca aa--)---u- ---------C CUGAA----- ---------- 1081 ---------- ---------- ---------- ---------- ---------- --AGCU(caa 1141 a----)AGC- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUG UUUGAUGAG- --CCUGC-GU |--------- -AGUAUUA-- 1321 -GGUAGUUGG UC-AG(GUAA AGG------- ---------- ---------- ------)CUG 1381 ACCAA|---- GCCAA--UGA U|GCUUA-GC UG|---GUCU (UUUC--)GG AUGAUCAGC| 1441 CACACC-GGG AC(UGAGA-C AA-)GGCCCG G|ACUCC--( CACG-)--GG GGG----C-A 1501 GCA|GUG-GG GAAUCUUGGA C-AAUGGGC( ---------- ----GAAA)G CCCGA-UCC| 1561 A|-GCAA-U- AU-CGC---- -GUGAGUGAA --GAAG-AGC (-------aa ugcc------ 1621 --------)G CUUGUA-AAG -CUC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -----UUUCG UCGAGugcgc gau------- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- --------ca ugacaggACU CGAGGAAGAA GCCCC|-GGC 1921 -UAA-C---U CCGU-G(-CC AGCAGCC-GC -GGU-AA)-G ACGGGG|--- -GGG-GCA-- 1981 GGUCU-UCUU CGG--AAUCA CUGGGC|GUA AAGGGCACGU -A-GGCG|GU GAAUCG--GG 2041 |UUGAA--AG UGAAA----G UCACCA-(-- --AAAAC)-U GGCGG----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------AA UGCUCUCGAA ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|C AAUUCAC-UC 2281 G-----AGUG -AG-ACAG-A -GGAGA--GU -----|GGAA UUUCGU-GUG ---UAGGG(G 2341 UGAAA)UCC- CGA---GAUA AACG-AAG-G AAG------- ----GCCAAA -AGC(-GAAG 2401 -)GC|A---- ----GCUCUC U-GGGUC-CC UA---CCGAC GCU--GGGGU GCGAA-AGCA 2461 U-GGG---GA GCGAACGGG( AUUAGAUAC) CCCG-GUAG| -UCCA-UGC- CGUAAA-CGA 2521 U--GAGU-GU |UC|GCCUUU GGU-cu(-ac gc-------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)gg--AU CAGGGGC-CC AGC(UAAC)G CGUGAAACAC 2701 U-C|--C|GC C-UGGG-GAG UACGGUC(-- -GCAA--)GA GCU--AAACU CAAAGGAA-U 2761 UG|ACGGGG- GCCGGC---A CAAGCGGU|G GAGCAUGU-G |GUUUAA-UU CG(AUACAAC 2821 G--------- ----)CGCAA A-ACCUUACC AGCCCUUGAC AUAUGAA--- ---------- 2881 ---------- ---------- ---------- -------UUU-CA-U A--C---AGG UGC-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-CU CGU-|GUC(G --UGA)GAUG UUUGG(UCA- 3181 AGU)CCU-A- U-AACGAGCG AAA-CCCUCG -----UUUUG UGUUGCUU-- -----(---- 3241 --)--- ---|CGCACU CAC-GAGGGA -CUGCCA-GU (GAUA-U)AC UGG-AGGAAG 3781 -----GUG-G GGAUGA-CGU C-AAGUCCGC A|UGGC|CCU UAU------- ---------G 3841 G-G-CU-GGG CC-ACA--CA -CGUGCUACA AU--GGCAAU U-ACAA-UGG GA--AGCAA- 3901 GGCU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UAA--)GGCG -GAGCG-AAU CCGG-AAAGA UUG-CCUCGG 4021 ---------- -----UUCGG --AUUGU-UC U-C(------ ---------- ---------- 4081 ---------- ---------- UGCAAc-uc) G-AG-A--AC -A--UGAAG- -UUGGAAUCG 4141 C-U--AGUAA U-CGCGGA(- UCAGC-AU-- --)GCCGCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--GUAC 4261 CCGGGC-CC- UGUACACA-C -CGCCCGUCA C-ACC--CCG GGA-auaggu uuc-gcccga 4321 agcaucggac ccauaggauc acccauuac- uucuguguac -(cacua-)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->gugccac aaaggc-u-u ug-guggucu uauuggcgca 4561 uaccacggug gggccUUCGA CUGG-GGU-G AAGUCGUAAC AAGGUAGC-C GUA-GG(GGA 4621 -A)CCU-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.crass 5213 bp RNA RNA 19-DEC-1997 DEFINITION Mitochondrion Corynaea crassa.; . ACCESSION U82636 KEYWORDS . SOURCE Mitochondrion Corynaea crassa. ORGANISM Mitochondrion Corynaea crassa. REFERENCE 1 (bases 1 to 1721) AUTHORS Duff,R.J. and Nickrent,D.L. TITLE Mutation rates and phylogenetic utility of mitochondrial SSU rDNA in holoparasitic plants JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1721) AUTHORS Duff,R.J. and Nickrent,D.L. TITLE Direct Submission JOURNAL Submitted (19-DEC-1996) Plant Biology, Southern Illinois University, Carbondale, IL 62901-6509, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U82636 BASE COUNT 454 a 410 c 507 g 350 t 3492 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~~~~~~~~ -~-~~~~-~~ |~~-~U--UA ACAC-A-UGC 721 -AAGUCG-AA CGUUG|UUUU CAGgaaa(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)-------- 841 -------a-- -accc---gc g-aaagg-cc cuaacaggga cg-g------ ---------- 901 ---------- ---------- ---------- --------ga ggugg----a gUUGAGAA|C 961 A--AA-GU|G GCGAACGGGU GCGUAA--CG C|GUG-GGAA --UC---UGC CGAAC-AGUU 1021 CGGG------ ---c---(ca aa--)---u- ---------C CUGAAGA--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- -AAGCU(aaa 1141 a----)AGC- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUG UUUGAUGAG- --CCCGC-GU |--------- -AGUAUUA-- 1321 -GGUAGUUGG UC-AG(GUAA AGG------- ---------- ---------- ------)CUG 1381 ACCAA|---- GCCAA--UGA U|GCUUA-GC UG|---GUCU (UUUC--)GG AUGAUCCGC| 1441 CACACC-GGG AC(UGAGA-C AC-)GGCCCG G|ACUCC--( CACG-)--GG GGG----C-A 1501 GCA|GUG-GG GAAUCUUGGA C-AAUGGGC( ---------- ----GAAA)G CCCGA-UCC| 1561 A|-GCA--U- AU-CGC---- -GUGAGUGAA --GAA--GGC (-------aa ugcc------ 1621 --------)G CUCGUA-AAG -CUC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -----UUUCG UCGAGugcgc gau------- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- --------ca ugacaggACU CGAGGAAGAA GCCCC|-GGC 1921 -UAA-C---U CCGU-G(-CC AGCAGCC-GC -GGU-AA)-G ACGGGG|--- -GGG-GCA-- 1981 GGUCU-UUUU CGG--AAUGA CUGGGC|GUA AAGGGCACGU -A-GGCG|GU GAAUCG--GG 2041 |UUGAA--AG UGAAA----G UCGCCA-(-- --AAAAC)-G GGCGG----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------AA UGCUCUCGAA ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|C AAUUCAC-UC 2281 G-----AGUG -AG-ACAG-G -GGAGA--GU -----|GGAA UUUCGU-GUG ---UAGGG(G 2341 UGAAA)UCC- CGA---GAUA AACG-AAG-G AAG------- ----GCCAAA -AGC(-GAAG 2401 -)GC|A---- ----GCUCUC U-GGGUC-CC UA---CCGAC GCU--GGGGU GCGAA-AGCA 2461 U-GGG---GA GCGAACGGG( AUUAGAUAC) CCCG-GUAG| -UCCA-UGC- CGUAAA-CGA 2521 U--GAGU-GU |UC|GCCCUU GGU-cu(-ac gc-------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)gg--AU CAGGGGC-CC AGC(UAAC)G CGUGAAACAC 2701 U-C|--C|GC C-UGGG-GAG UACGUUC(-- -GCAA--)GA AUG--AAACU CAAAGGAA-U 2761 UG|ACGGGG- GCCGGC---A CAAGCGGU|G GAGCAUGU-G |GUUUAA-UU CG(AUACAAC 2821 G--------- ----)CGCAA A-ACCUUACC AGCCCUUGAC AUAUGAA--- ---------- 2881 ---------- ---------- ---------- -------UUU-CA-U A--C---AGG UGC-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-CU CGU-|GUC(G --UGA)GAUG UUUGG(UCA- 3181 AGU)CCU-A- U-AACGAGCG AAA-CCCUCG -----UUUUG UGUUGCUU-- -----(---- 3241 --)--- ---|CGCACU CAC-GAGGGA -CUGCCG-GU (GAUA-U)AC UGG-AGGAAG 3781 -----GUG-G GGAUGA-CGU C-AAGUCCGC A|UGGC|CCU UAU------- ---------G 3841 G-G-CU-GGG CC-ACA--CA -CGUGCUACA AU--GGCAAU U-ACAA-UGG GA--AGCAA- 3901 GGCU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UAA--)GGCG -GAGCG-AAU CCGG-AAAGA UUG-CCUCAG 4021 ---------- -----UUCGG --AUUGU-UC U-C(------ ---------- ---------- 4081 ---------- ---------- UGCAAc-uc) G-AG-A--AC -A--UGAAG- -UUGGAAUCG 4141 C-U--AGUAA U-CGCGGA(- UCAGC-AU-- --)GCCGCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--GUAC 4261 CCGGGC-CC- UGUACACA-C -CGCCCGUCA C-ACC--CUG GGA-auuggu uuc-gcccga 4321 agcaucggac caa-uga-uc acccaugac- uucuguguac -(cacua-)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->gugccac aaaggcuu-u ug-guggucu uauuggcgca 4561 uaccacggug gggucUU~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.C.ruber 5213 bp RNA RNA 19-DEC-1997 DEFINITION Mitochondrion Cytinus ruber.; . ACCESSION U82639 KEYWORDS . SOURCE Mitochondrion Cytinus ruber. ORGANISM Mitochondrion Cytinus ruber. REFERENCE 1 (bases 1 to 1767) AUTHORS Duff,R.J. and Nickrent,D.L. TITLE Mutation rates and phylogenetic utility of mitochondrial SSU rDNA in holoparasitic plants JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1767) AUTHORS Duff,R.J. and Nickrent,D.L. TITLE Direct Submission JOURNAL Submitted (19-DEC-1996) Plant Biology, Southern Illinois University, Carbondale, IL 62901-6509, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U82639 BASE COUNT 443 a 416 c 551 g 357 t 3446 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~~~~~~~~ -~-~~~~-~~ |~~-~~--~A ACAC-A-UGC 721 -AAGUCG-AA CGUUG|UUUU CGGggag(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)cuaggcag 841 aaggaaaaga ggcuccuagc -uaaag---- -uugucucgc ccag------ ---------- 901 ---------- ---------- ---------- --------ga ggugggaaca -gUGAGAA|C 961 A--AA-GU|G GCGAACGGGU GCGUAA--CG C|GUG-GGAA --UC---UGC CGAAC-AGUU 1021 CGGG------ ---c---(ca aa--)---u- ---------C CUGAAGA--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- -AAGCU(aaa 1141 a----)AGC- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUG UUUGAUGAG- --CCUGC-GU |--------- -AGUCUUA-- 1321 -GGUAGUUGG UC-AG(GUAA AGG------- ---------- ---------- ------)CUG 1381 ACCAA|---- GCCAA--UGA U|GCUUA-GC UG|---GUCU (UUUC--)GG AUGAUCAGC| 1441 CACACU-GGG AC(UGAGA-C AC-)GGCCCA G|ACUCC--( CACG-)--GG GGG----C-A 1501 GCA|GUG-GG GAAUCUUGGA C-AAUGGGC( ---------- ----GAAA)G CCCGA-UCC| 1561 A|-GCAA-U- AU-CGC---- -GUGAGUGAA --GAAG-GGU (-------aa uccc------ 1621 --------)G CUUGUC-AAG -CUC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -----UUUCG UCGAGugcgc gau------- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- --------ca ugacaggACU CGAGGAAGAA GCCCC|-GGC 1921 -UAA-C---U CCGU-G(-CC AGCAGCC-GC -GGU-AA)-G ACGGGG|--- -GGG-GCA-- 1981 AGUGU-UCUU CGG--AAUGA CUGCGC|GUA AAGGGCACGU -A-GGCG|GU GAAUCG--GG 2041 |UUGAA--AG UGAAA----G UCGCCA-(-- --AAAAG)-U GGCGG----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------AA UGCUCUCGAA ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|C AAUUCAC-UU 2281 G-----AGUG -AG-ACAG-A -GGAGA--GU -----|GGAA UUUCGU-GUG ---GAGGG(G 2341 UGAAA)UCC- AAA---GAUC UACG-AAG-G AAG------- ----GCCAAA -AGC(-GAAG 2401 -)GC|A---- ----GCUCUC U-GGGUC-CC UA---CCGAC GCU--GGGGU GCGAA-A-CG 2461 U-GGG---GA GCGAACGGG( AUUAGAGAC) CCCA-GUAG| -UCCA-UGC- CGUAAA-CGA 2521 U--GAGU-GU |UC|GCCCUU GGU-cu(-ac gc-------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)gg--AU CAGGGGC-CC AGC(UAAC)G CGUGAAACAC 2701 U-C|--C|GC C-UGGG-GAG UACGGUC(-- -GCAA--)GA CCG--AAACU CAAAGGAA-U 2761 UG|ACGGGG- GCCUGC---G CAA-CGGU|G GAGCAUGU-U |GUUUAA-UU CG(AGACAAC 2821 G--------- ----)CGCAA A-ACCUUACC AGCCCUUGAC AGAUGAA--- ---------- 2881 ---------- ---------- ---------- -------UUU-CA-U A--C---AGG UGC-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-CU CGU-|GUC(G --UGA)GAUG UUUGG(UCA- 3181 AGU)CCU-U- U-AACGAGCG AAA-CCCUCG -----UUUUG UGUUGCUG-- -----(---- 3241 --)--- ---|CGCACU CAC-GAGGGA -CUGCCA-GU (GAGA-G)AC UGG-AGGAAG 3781 -----GUG-G GGAUGA-CGU C-AAGUCCGC A|UGGC|CCU UAU------- ---------G 3841 G-G-CU-GGG CC-ACA--CA -CGUGCUACA AU--GGCAAU G-ACAA-UGG GA--AGCAA- 3901 GGCU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UCA--)GGCG -GAGCG-AAU CCGG-AAAGA UUG-CCUCAG 4021 ---------- -----UUCGG --AUUGU-UC U-C(------ ---------- ---------- 4081 ---------- ---------- UGCAAc-uc) G-GG-A--AC -A--UGAAG- -UUGGAAUCG 4141 C-U--AGUAA U-CGCGGA(- UCAGC-AU-- --)GCCGCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UCU--GUAC 4261 CCGGGC-CC- UGUACACA-C -CGCCCGUCA C-ACC--CUG GGA-auuggu uuc-gcccga 4321 agcaucggac caa-uga-uc acccaugac- uucuguguac -(cacua-)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->gugccac aaaggcuu-u ug-guggucu uauuggcgca 4561 uaccacggug gggucUUCGA C~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.Hyd.afr 5213 bp RNA RNA 19-DEC-1997 DEFINITION Mitochondrion Hydnora africana.; . ACCESSION U82637 KEYWORDS . SOURCE Mitochondrion Hydnora africana. ORGANISM Mitochondrion Hydnora africana. REFERENCE 1 (bases 1 to 1891) AUTHORS Duff,R.J. and Nickrent,D.L. TITLE Mutation rates and phylogenetic utility of mitochondrial SSU rDNA in holoparasitic plants JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1891) AUTHORS Duff,R.J. and Nickrent,D.L. TITLE Direct Submission JOURNAL Submitted (19-DEC-1996) Plant Biology, Southern Illinois University, Carbondale, IL 62901-6509, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U82637 BASE COUNT 468 a 458 c 573 g 392 t 3322 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~~~~~~~~ -~-~~~~-~~ |~~-~U--UA ACAC-A-UGC 721 -AAGUCG-AA CGUUG|UUUU CGGgggc(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- -)gggau--- 841 ---------- ---------- ---aagguag cuugucucgc cc-------- ---------- 901 ---uucacau cuaaagau-- ---------- ---------a gaugggcaca gUGGAAAA|C 961 A--AA-GU|G GCGAACGGGU GCGUAA--CG C|GUG-GGAA --UC---UGC CGAAC-AGUG 1021 CGGG------ ---c---(ca aa--)---u- ---------C CUGAAuc--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- -AAGCU(aaa 1141 a----)AGC- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUG UUUGAUGAG- --CCUGC-GU |--------- -AGUAUUA-- 1321 -GGUAGUUGG UC-AG(GUAA AGG------- ---------- ---------- ------)CUG 1381 ACCAA|---- GCCAA--UGA U|GCUUA-GC UG|---GUCU (UUUC--)GG AUGAUCAGC| 1441 CACACU-GGG AC(UGAGA-C ACa)GGCCCG G|ACUCC--( CACG-)--GG GGG----C-A 1501 GCA|GUG-GG GAAUCUUGGA C-AAUGGGC( ---------- ----GAAA)G CCCGA-UCC| 1561 A|-GCAA-U- AU-CGC---- -GUGAGUGAA --GAAG-GGC (-------aa ugcc------ 1621 --------)G CUUGUA-AAG -CUC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -----UUUCG UCGAGugcgc gau------- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- --------ca ugacaugACU CGAAGAAGAA GCCCC|-GGC 1921 -UAA-C---U CCGU-G(-CC AGCAGCC-GC -GGU-AA)-G ACGGGG|--- -GGG-GCA-- 1981 AGUGU-UCUU CGG--AAUGA CUGGGC|GUC AAGGGCACGU -A-GGCG|GU GAAUCG--GG 2041 |UUUCA--AG UGAAA----G UCGCCA-(-- --AAAAG)-U CGCGG----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------AA UGCUCUCGAA ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|C CAUUCAC-UU 2281 G-----AGUG -AG-ACAG-A -GGAGA--GU -----|GGAA UUUCGU-GUG ---UAGGG(G 2341 UGAAA)UCC- GGA---GAUC UACG-AAG-G AAG------- ----GCCAAA -AGC(-GAAG 2401 -)GC|A---- ----GCUCUC U-GGGUC-CC UA---CCGAC GCU--GGGGU GCGAA-AGCA 2461 U-GGG---GA GCAAACAGG( AUUAGAUAC) CCUG-GUAG| -UCCA-UGC- CGUAAA-CGA 2521 U--GAGU-GU |UC|GCCCUU GGU-cu(-ac gc-------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)gg--AU CAGGGGC-CC AGC(UAAC)G CGUGAAACAC 2701 U-C|--C|GC C-UGGG-GAG UACGGUC(-- -GCAA--)GA CCG--AAACU CAAAGGAA-U 2761 UG|ACGGGG- GCCCGC---A CAAGCGGU|G GAGCAUGU-G |GUUUAA-UU CG(AUACAAC 2821 G--------- ----)CGCAA A-ACCUUACC AGCCCUUGAC AUAUGAA--- ---------- 2881 ---------- ---------- ---------- -------UUU-CA-U A--C---AGG UGC-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-CU CGU-|GUC(G --UGA)GAUG UUUGG(UCA- 3181 AGU)CCU-A- U-AACGAGCG AAA-CCCUCG -----UCUUG UGUUGCUG-- -----(---- 3241 --)--- ---|CGCACU CAC-GAGGGA -CUGCCA-GU (GAUA-U)AC UGG-AGGAAG 3781 -----GUG-G GGAUGA-CGU C-AAGUCCGC A|UGGC|CCU UAU------- ---------G 3841 G-G-CU-GGG CC-ACA--CA -CGUGCUACA AU--GGCAAU G-ACAA-UGG GA--AGCAA- 3901 GGCU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UAA--)GGCG -GAGCG-AAU CCGG-AAAGA UUG-CCUCAG 4021 ---------- -----UUCGG --AUUGU-UC U-C(------ ---------- ---------- 4081 ---------- ---------- UGCAAc-uc) G-GG-A--AC -A--UGAAG- -UUGGAAUCG 4141 C-U--AGUAA U-CGCGGA(- UCAGC-AU-- --)GCCGCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--GUAC 4261 CCGGGC-CC- UGUACACA-C -CGCCCGUCA C-ACC--CUG GGA-augggu uuc-gcccga 4321 agcaucggac caa-uga-uc acccaugacu ggaaguguac -(cacaa-)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->gugccac aaaggcuggg agcguggucu uauuggcgca 4561 uaccacggug gggucUUCGA ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~(~~~ 4621 -~)~~~-~~- ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS mt.R.price 5213 bp RNA RNA 01-JAN-1998 DEFINITION Mitochondrion Rafflesia pricei.; . ACCESSION U96694 KEYWORDS . SOURCE Mitochondrion Rafflesia pricei. ORGANISM Mitochondrion Rafflesia pricei. REFERENCE 1 (bases 1 to 1861) AUTHORS Duff,R.J. and Nickrent,D.L. TITLE Characterization of mitochondrial small-subunit ribosomal RNAs from holoparasitic plants JOURNAL J. Mol. Evol. 45, 631-639 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1861) AUTHORS Duff,R.J. and Nickrent,D.L. TITLE Direct Submission JOURNAL Submitted (04-APR-1997) Plant Biology, Southern Illinois University, MC 6509 Life Science III, Carbondale, IL 62901-6509, USA STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: U96694 BASE COUNT 478 a 429 c 573 g 381 t 3352 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------~ ~~~~~~~~~~ ~~~~~~~~~~ 661 (~~~-)~-~~ ~|~~~~~-~~ ~~~~~~~~~~ -~-~~~~-~~ |~~-~~--~~ ~~~~-A-UGC 721 -AAGUCG-AA CGUUG|UUUU CGgggag(cg agaaaauagc gagaagaagu gcgcgcccua 781 uaaucuaaaa uaaagcacuc cuuuuuuauu aaaguucgag gccuucguuu g-cugggcag 841 aaggaa--ga aaaaccuagc -uaaagguag cuugucucgc ccag------ ---------- 901 ---------- ---------- ---------- --------ga ggugggaaca gUUGAGAA|C 961 A--AA-GU|G GCGAACGGGU GCGUAA--CG C|GUG-GGAA --UC---UGC CGAAC-AGUU 1021 CGGG------ ---c---(ca aa--)---u- ---------C CUGAAGA--- ---------- 1081 ---------- ---------- ---------- ---------- ---------- -AAGCU(aaa 1141 a----)AGC- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------GCUG UUUGAUGAG- --CCUGC-GU |--------- -AGUAUUA-- 1321 -GGUAGUUGG UC-AG(GUAA AGG------- ---------- ---------- ------)CUG 1381 ACCAA|---- GCCAA--UGA U|GCUUA-GC UG|---GUCU (UUUC--)GG AUGAUCAGC| 1441 CACACU-GGG AC(UGAGA-C AC-)GGCCCG G|ACUCC--( CACG-)--GG GGG----C-A 1501 GCA|GUG-GG GAAUCUUGGA C-AAUGGGC( ---------- ----GAAA)G CCCGA-UCC| 1561 A|-GCAA-U- AU-CGC---- -GUGAGUGAA --GAAG-GGC (-------aa ugcc------ 1621 --------)G CUUGUA-AAG -CUC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -----UUUCG UCGAGugcgc gau------- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- --------ca ugacaggACU CGAGGAAGAA GCCCC|-GGC 1921 -UAA-C---U CCGU-G(-CC AGCAGCC-GC -GGU-AA)-G ACGGGG|--- -GGG-GCA-- 1981 AGUGU-UCUU CGG--AAUGA CUGGGC|GUA AAGGGCACGU -A-GGCG|GU GAAUCG--GG 2041 |UUGAA--AG UGAAA----G UCGCCA-(-- --AAAAC)-U GGCGG----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------AA UGCUCUCGAA ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|C AAUUCAC-UU 2281 G-----AGUG -AG-ACAG-A -GGAGA--GU -----|GGAA UUUCGU-GUG ---UAGGG(G 2341 UGAAA)UCC- GGG---GAUA UAAG-AAG-G AAC------- ----GCCAAA -AGC(-GAAG 2401 -)GC|A---- ----GCUCUC U-GGGUC-CC UA---CCGAC GCU--GGGGU GCGAA-AGCG 2461 U-GGG---GA GCGAACGGG( AUUAGAUAA) CCUG-GUAG| -UCCA-UGC- CGUAAA-CGA 2521 U--GAGU-GU |UC|GCCCUU GGU-cu(-ac gc-------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)gg--AU CAUGGGC-CU AGC(UAAC)G CGUGAAACAC 2701 U-C|--C|GC C-UGGG-GAG UACGGUC(-- -GCAA--)GA CCG--AAACU CAAAGGAA-U 2761 UG|ACGGGG- GCCCGC---A CGAGCGGU|G GAGCAUGU-G |GUUUAA-UU CG(AUACAAC 2821 G--------- ----)CGCAA A-ACCUUACC AGCCCUUGAC AUAUGAA--- ---------- 2881 ---------- ---------- ---------- -------UUU-CA-U A--C---AGG UGC-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-CU CGU-|GUC(G --UGA)GAUG UUUGG(UCA- 3181 AGU)CCU-A- U-AACGAGCG AAA-CCCUCG -----UUUUG UGUUGCUG-- -----(---- 3241 --)(--G UAA--)GGCG -GAGCG-AAU CCGG-AAAGA UUG-CCUAAG 4021 ---------- -----UUCGG --AUUGU-UC U-C(------ ---------- ---------- 4081 ---------- ---------- UGCAAc-uc) G-GG-A--AC -A--UGAAG- -UUGGAAUCG 4141 C-U--AGUAA U-CGCGGA(- UCAGC-AU-- --)GCCGCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAU--GUAC 4261 CCGGGC-CC- UGUACACA-C -CGCCCGUCA C-ACC--CUG GGA-auuggu uuc-gcccga 4321 agcaucggac caa-gga-uc acccaugac- uucuguguac -(cacua-)< ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->gugccac aaaggcuu-u ug-guggucu ucuuggcgca 4561 uaccacggug gggucUUCGA CUGG-GGU-G AAGUCGUAAC AAGGUAGC-C GUA-GG(GGA 4621 -A)CCU-GU- GG~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (3)-strame 5213 bp RNA RNA 25-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.P.litto 5213 bp RNA RNA 11-JAN-191 DEFINITION Mitochondrion Pilayella littoralis. ACCESSION No information KEYWORDS No information. SOURCE Mitochondrion Pilayella littoralis. ORGANISM Mitochondrion Pilayella littoralis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: X14874 ID MIPL16S standard; DNA; ORG; 1659 BP. XX AC X14874; X14803; XX DT 18-OCT-1990 (Rel. 25, Created) DT 24-MAR-1994 (Rel. 39, Last updated, Version 10) XX DE Pylaiella littoralis mitochondrail gene for 16S ribosomal RNA XX KW 16S ribosomal RNA; ribosomal RNA. XX OS Pylaiella littoralis OC Eukaryota; Plantae; Thallobionta; Chromophycota; Phaeophyceae. XX OG Mitochondrion XX RN [1] RA Markowicz Y., Loiseaux-de Goer S., Mache R.; RT "Presence of a 16S rRNA pseudogene in the bi-molecular plastid RT genome of the primitive brown alga Pylaiella littoralis. RT Evolutionary implications"; RL Curr. Genet. 14:599-608(1988). XX CC Corrected by Fontaine, J.M. and Loiseaux-de Goer, S. 24-Mar-94 XX FH Key Location/Qualifiers FH FT source 1..1659 FT /organism="Pylaiella littoralis" FT /clone="pPLiE3'" FT /mitochondrion FT -35_signal 8..13 FT /note="putative" FT -10_signal 33..38 FT /note="putative" FT rRNA 141..1654 FT /product="16S ribosomal RNA" XX SQ Sequence 1659 BP; 506 A; 277 C; 424 G; 452 T; 0 other; BASE COUNT 457 a 258 c 398 g 406 t 3694 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|----- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -----uaaua aaaauGAGUU 661 (UGA-)U-CC U|GGCUC-AG AGUGAAGGCU -A-UAAG-UC |UG-CU-uga aUAC-A-UGC 721 -GAGUCG-AA UGau-|---- -------(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------uuag -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- --------|- 961 --auC-AU|G GCGUACGGGU GAGUAA--UA G|ACUcaua- --uc---ugg cccca-acuc 1021 uuggauaa-- --------uc cu------au ccc-----uc cgggagaaaa aaagggaaau 1081 acaggauaau uauaagguac gcc------- ---------- ---------- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ------Gguu ggggaugau- --UAGGU-CG |--------- -AGUAUUA-- 1321 -GGUAGUUGG UA-AG(---u aag------- ---------- ---------- ------)CUU 1381 ACCAA|---- GCCUU--UGA U|GCUUA-GU UG|---GUCU (GGGA--)GG ACGAUCAAU| 1441 cacACU-GGG AC(UGAGA-C AA-)GGCCCA G|GUUUC--( AUUU-)--GA AGG----C-A 1501 GCA|GUA-AG GAAUAUUGCA C-AAUGAGC( ---------- ----gaaa)G CUUGA-UGC| 1561 A|-GCAA-G- AC-UUG---- -GUGAGGGAU u-gaag-gc- ---------- uuag------ 1621 ---------- guuguA-AAC -CUC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -----uuuu- uuaacugagg auaau----- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- -gacauuaag uuaagaauaa GUCCC|-GAC 1921 -UAA-C---U UCGU-G(-CC AGCAGUC-GC -GGU-AA)-U ACGGAG|--- -GGG-GCA-- 1981 AGCCU-UAUU CGU--CAUAA CUGggc|guA AAGGGCCCGU -A-gguu|gc uuucug---u 2041 aaaguuauuu guuaa----a uauuauagcu -uaacuauaa aaagg----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------ca uuu------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---aaaac|a ugaaagc-uu 2281 g-----AG-u -cu-gaca-g -aggga--aa u----|GGAA uuuuuu-aau ---uaggg(- 2341 uuaaa)cucc gga---uaag uaaa-aga-G AAC------- ----aucagc -ugc(-gaaa 2401 -)ga|----- -----uuucc u-uguucag- ua---CUGAC gcu--GAGGG GCGAA-GGCG 2461 U-AGG---UA GCGAACAGG( AUUUGAGAC) CCUG-GUAG| -UCUA-CGC- uguaaa-cga 2521 u--gagu-gc |ua-auuuuu agaaaucua- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---gaaa-au aua(gcca)a ggcauuaagc 2701 a-u|--C|gc u--gag-GAG UACGAGC(-- -GCAA--)GC UUA--aaaau cAACGGAA-U 2761 UG|GCGGGG- GUUCAA---A CAAGUGGU|G GAGCAUGU-G |GUUUAA-UG CG(AUAAUAC 2821 G--------- ----)CGCGU A-ACCUUACC AGUUcuagua -agucuguca uuuuuacgag 2881 acgua---ac aa-acuuugg gacuuuc--- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- -------AGG UGU-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-CU CGU-|GUC(G --UGA)GAUg uaggg(uua- 3181 auu)ccugu- A-ACUGAGCG CAA-CCCUcg -----ucucu uuuaaguuuu guaauaguuu 3241 auacuaagua auaaaacagg agagauacug ccaacguu-- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- -----gagug 3781 gaggaagguG GGAUGA-GGU C-AAGUCUUC A|UGGC|CCu ua-------- ---------u 3841 A-A-CU-GGG CU-ACA--CA -CGUGCUACA AU--GGGAAG G-acaa-cga gu--ugcga- 3901 ggga------ ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--g uaa--)ucca -aagccaauc uu-a-aaaCC UUU-UCUUAG 4021 ---------- -----UUCGG --AUUGG-GG G-C(------ ---------- ---------- 4081 ---------- ---------- UGCAAu-uc) G-CC-C--CC -A--UGAAG- -UUGGAAUCA 4141 C-U--AGUAA U-CGCGAA(- UCAGG-AU-- --)GUCGCGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -uac--guca 4261 cUGGGC-CU- UGCACACA-C -CGCCCGUCA C-GUC--CUG Gga-guugac uuggccagaa 4321 gauuuaggaa uaaacu-uuu uaaguugaa- guuugauaaa -aaaaagcuu uuuuucuuu- 4381 ucuaa-cgaa aaaagaaagu ccuuuug--- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ----aaggac agguaagcaa CUGG-GAG-U AAGUCGUAAC AAGGUAGU-C GUA-GG(GGA 4621 -A)CCU-GC- GGCUGGAAAA auuaauuu-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| // LOCUS (2)-Unclas 5213 bp RNA RNA 25-JAN-1994 DEFINITION Unclassified Eukaryotes. ACCESSION No information KEYWORDS No information. SOURCE Unclassified Eukaryotes. ORGANISM Unclassified Eukaryotes. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5213 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ----|..... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......-.. .......... .......... ..-....... |......... ....-..... 721 .......-.. .....|.... ........-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ------.... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .....-..|. .......... .......... .|........ -......... .....-.... 1021 .......... ....---... ..-..---.. .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .........- .......... ..----.... ........-- 1321 .......... .......... .......... .......... .......... .......... 1381 ......---. .......... .......-.. .......... .......... .......... 1441 .......... ........-. ..-....... .......... .......... ........-. 1501 ...|...-.. .......... .......... .......... .......... .....-...| 1561 .......... .......... .......... .......... .--....... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......-.. .......... -.......-. .......... .......... 1981 .....-.... ...--..... .......... .......... -......... .......... 2041 .......... .....----. .......... .......... .....----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------.. .......... .......... .......... 2221 .......... .......... .......... .......... ........|. .......-.. 2281 .......... -......... ......--.. .-........ .......... ---....... 2341 .......... ...-...... ....-..... .......... .......... .......... 2401 ....|..... .......... .......... .......... .......... .....-.... 2461 .....--... .......... .......... .......... .......... .......... 2521 .--....-.. |......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .-..-..... .......... .......... .......... .......... .......... 2761 ..|....... .......... ........|. ........-. |......... .......... 2821 .--------- ----...... .-........ .......... .......... .......... 2881 .....---.. ..-....... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .--....... ...-.....- 3121 .......--. |......... .......-.. .......... .-........ .........- 3181 .......... .-........ .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .....--... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... ........-- --........ .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .....-.... .......... 3781 .......... .......... .......... ......|... ...------- -------... 3841 ...-..-... ..-....... .......... ..-....... ......-... ..--...... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... ...-...... .......... .......... .......... 4021 ......---. .......... .-........ .-........ .......... .......... 4081 .......... .......... ......-... .......... .........- .......... 4141 .-.-...... .......... .......... .......... .-........ .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .-........ ...-...... .......... 4321 .......... ......-... .........- .......... -......... .........- 4381 .....-.... .......... ........-- ....-..... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... ...--..... ........-- .......... .......... 4561 .......... .......... ........-. .......... ........-. ...-...... 4621 -.....-... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... ........|| ||| // LOCUS mt.R.ameri 5213 bp RNA RNA 09-JAN-1997 DEFINITION mitochondria, Reclinomonas americana. ACCESSION No information KEYWORDS No information. SOURCE mitochondria, Reclinomonas americana. ORGANISM mitochondria, Reclinomonas americana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5213) Corresponding GenBank entry: AF007261 Reclinomonas americana mt rns, final Version 21NOV96, 1595 Residues BASE COUNT 480 a 285 c 403 g 427 t 3618 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -------UAA UAGAAGAGUU 661 (UGA-)U-CC U|GGCUC-AG AAUGAACGCU -A-GCGA-UA |CG-CU--UA ACAC-A-UGC 721 -AAGUUG-AA Ugggg|uauu ca-----(-- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------uau -)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ----ugag|u 961 auucc-au|A GCGAACGGGU GAGUAA--UA C|ACA-AGAA --CU---UGC CUAAC-AGuc 1021 ugggauaagu aua----(-- ----)----- ---------- -------gua acac(uuua) 1081 guguuac-ga auuaagauag uuu(uuu)gg auuaucuuaa auau--aaau accgg----- 1141 ---------a uauauuga-- ----aaga-- ---uuaau-- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- -----cGCUG UUAGAUAGG- --CUUGU-GG |--------- -AGGAAUAU- 1321 -GGUAGUUGG UA-GG(GUAA UGG------- ---------- ---------- ------)CCU 1381 ACCAA|---- GCCUU--UGA U|CCUUA-GC CG|---GUCU (GAAA--)GG ACGAUCGGC| 1441 CACACU-GGG AC(UGAGA-C AC-)GGCCCA G|ACUCC--( UACG-)--GG AGG----C-A 1501 GCA|GUG-GG GAAUAUUGGA C-AAUGGGC( ---------- ----GAAA)G CUUGA-UCC| 1561 A|-GCGA-U- AU-CGC---- -GUGAGUGAU --GAAG-GCU (--------- cuuuu----- 1621 --------)G GUUGUA-AAG -CUC|----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 -----UUUCG UUGAGGAAGA UAA------- -(-------- )--------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- UGACGGUACU CAAAGAAGAA GCCCC|-GGC 1921 -UAA-C---U CCGU-G(-CC AGCAGCC-GC -GGU-AA)-U ACGGGG|--- -GGG-GCU-- 1981 AGUGU-UAUU CAU--AAUGA UUGGGC|GUA AAGGGCACGU -A-GGUG|GU CCAUUA--AG 2041 |UUAUA--CG UAAAA----U CCCUGAG(-- --CUUAA)CU UAGGA----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- --------AG GUCGUAUAAU ---------- ---------- 2221 ---------- ---------- ---------- ---------- ------AC|U GGUGGAC-UU 2281 G-----AGUU -UG-AUAG-A -GGAUA--GU -----|GGUA UUUCUA-GUG ---UAAGG(A 2341 UAAAA)UCU- AUA---AAUA UUAG-AAG-G AAC------- ----ACCCGA -AGC(-GAAG 2401 -)GC|G---- ----ACUAUC U-GGAUC-AA CA---CUGAC ACU--GAGGU GCGAA-AGCG 2461 U-GGG---GA GCAAACAGG( AUUUGAGAC) CCUG-GUAG| -UCCA-CGC- CGUAAA-CGA 2521 U--GGGU-GU |UA|aauguc ggga--(-aa au-------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---)---ucu cgguguu-AU AGC(UAAC)G CGUUAAACAC 2701 C-C|--C|GC C-UGGG-GAA UAUAAUC(-- -GCAA--)GA UUG--AAACU CAAAGGAA-U 2761 UG|ACGGGG- GCCUGA---A CAAGCGGU|G GAGCAUGU-G |GUUUAA-UU CG(AAACAAC 2821 G--------- ----)CGCAA A-ACCUUACC AGCUCUUGAC auuauuuu-- --uGAGCUGU 2881 (-------GA AA-)GCAGCU C-----(--- --)----aaa-auua auac---AGG UGU-UG|CA- 3121 |UG|-GC--U |G------UC GU-CA|G-CU CGU-|GUC(G --UGA)GAUG UUGGG(UUC- 3181 AGU)CCU-A- U-AACGAGCG CAA-CCCCUA -----UAAUC AGUUA----- -----(---- 3241 --)--- ---|--UACU UUG-AUUAAA -CUGCCU-GU (GAUA-A)GC AGG-AGGAAG 3781 -----GUG-G GGAUGA-CGU C-AAGUCCUC A|UGAC|CCU UAU------- ---------G 3841 A-G-CU-GGG CU-ACA--CA -UGUGCUACA AU--GGUAAU G-ACAA-UGG GA--AGCAA- 3901 UGAU<----- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ----->(--G UGA--)AUCG -GAGCAAAUC CUUC-AAACG UUA-CCUAAG 4021 ---------- -----UUCAG --AUUGU-UC U-C(------ ---------- ---------- 4081 ---------- ---------- UGCAAC-UC) G-AG-A--AC -A--UGAAG- -UCGGAAUCG 4141 C-U--AGUAA U-CGUGGA(- UCAGC-AC-- --)GCCACGG U-GAA----- ---------- 4201 ---------- ---------- ---------- ---------- ---------- -UAC--GUUC 4261 CCAGGC-CU- UGUACACA-C -CGCCCGUCA C-ACC--cug gaa-guuguu uuu-acccga 4321 aguuaugacu cuaacc-uua uuaauaaaa- aag------- -(------)< uaaaauuau- 4381 (uuuu-uaua uuau)guaau u--------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- -->------c uu--uuuu-- au-auaagga ggugcauaau 4561 -cac--ggua aaaauaguaa cuau-GGU-G AAGUCGUAAC AAGGUAGC-U GUA-GG(GGA 4621 -A)CCU-GU- AGCUGGAUGA ACUCCUUU-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|| ||| //