#- #- editor #- Fri May 11 11:47:31 2001 #- #- #- Reference sequence: E.coli #- Attributes: #= E.coli nobase in -out vis prt rna lin 5>3 func ref #= EURYARCHAE nobase -in out vis bold rna lin 5>3 func #= M.jannas.A nobase in out vis prt rna lin 5>3 comp #= M.jannas.B nobase in out vis prt rna lin 5>3 func #= M.vannieli nobase in out vis prt rna lin 5>3 func #= M.thermo.1 nobase in out vis prt rna lin 5>3 func #= M.thermo.2 nobase in out vis prt rna lin 5>3 func #= M.thermo.3 nobase in out vis prt rna lin 5>3 func #= M.hungatei nobase in out vis prt rna lin 5>3 func #= H.halobium nobase in out vis prt rna lin 5>3 func #= N.magadii nobase in out vis prt rna lin 5>3 func #= H.morrhuae nobase in out vis prt rna lin 5>3 func #= H.marism.1 nobase in out vis prt rna lin 5>3 func #= H.marism.2 nobase in out vis prt rna lin 5>3 func #= H.marism.3 nobase in out vis prt rna lin 5>3 func #= T.acidophi nobase in out vis prt rna lin 5>3 func #= A.fulgid.1 nobase in out vis prt rna lin 5>3 func #= A.fulgid.2 nobase in out vis prt rna lin 5>3 func #= T.celer nobase in out vis prt rna lin 5>3 func #= P.furiosus nobase in out vis prt rna lin 5>3 func #= P.horikosh nobase in out vis prt rna lin 5>3 func #= CRENARCHAE nobase -in out vis bold rna lin 5>3 func #= Pb.islandi nobase in out vis prt rna lin 5>3 func #= T.tenax nobase in out vis prt rna lin 5>3 func #= P.occultum nobase in out vis prt rna lin 5>3 func #= A.pern.OH2 nobase in out vis prt rna lin 5>3 func #= A.pern.K1 nobase in out vis prt rna lin 5>3 func #= A.pern.TB1 nobase in out vis prt rna lin 5>3 func #= A.pern.TB7 nobase in out vis prt rna lin 5>3 func #= S.marinu.1 nobase in out vis prt rna lin 5>3 func #= S.marinu.2 nobase in out vis prt rna lin 5>3 func #= D.mobilis nobase in out vis prt rna lin 5>3 func #= S.shibatae nobase in out vis prt rna lin 5>3 func #= S.solfatar nobase in out vis prt rna lin 5>3 func #= S.acidoc.1 nobase in out vis prt rna lin 5>3 func #= S.acidoc.2 nobase in out vis prt rna lin 5>3 func #= S.acidoc.3 nobase in out vis prt rna lin 5>3 func #= S.azoricus nobase in out vis prt rna lin 5>3 func #= A.infernus nobase in out vis prt rna lin 5>3 func #= A.brierley nobase in out vis prt rna lin 5>3 func #= Tf.pendens nobase in out vis prt rna lin 5>3 func #= C.symbio.A nobase in out vis prt rna lin 5>3 func #= C.symbio.B nobase in out vis prt rna lin 5>3 func #- #:E.coli:name:Escherichia coli #:E.coli:subsp: #:E.coli:strain: #:E.coli:atcc:? #:E.coli:acs:J01695 #:E.coli:auth: #:E.coli:title: #:E.coli:jour:E.coli:who:Published #:E.coli:who:Published #:E.coli:date:July 11, 1980 #:E.coli:rem:Phylo:Eubacteria,Purple,gamma,3 #:EURYARCHAE:name: #:EURYARCHAE:subsp: #:EURYARCHAE:strain: #:EURYARCHAE:atcc: #:EURYARCHAE:acs:DIVIDER #:EURYARCHAE:auth: #:EURYARCHAE:title: #:EURYARCHAE:jour: #:EURYARCHAE:who:Robin Gutell,MCDB-256,28595,7868901 #:EURYARCHAE:date:Fri Dec 31 13:58:19 1993 #:M.jannas.A:name:Methanococcus jannaschii. #:M.jannas.A:subsp: #:M.jannas.A:strain: #:M.jannas.A:atcc: #:M.jannas.A:acs:U67472 #:M.jannas.A:auth:Bult,C.J., White,O., Olsen,G.J., Zhou,L., Fleischmann,R.D., #:M.jannas.A:title:Complete genome sequence of the methanogenic archaeon, #:M.jannas.A:jour:Science 273 (5278), 1058-1073 (1996) #:M.jannas.A:who: #:M.jannas.A:date:27-AUG-1996 #:M.jannas.A:rem:LOCUS U67472 14222 bp DNA BCT 28-JAN-1998 #:M.jannas.A:rem:DEFINITION Methanococcus jannaschii section 14 of 150 of the complete genome. #:M.jannas.A:rem:ACCESSION U67472 L77117 #:M.jannas.A:rem:NID g2826253 #:M.jannas.A:rem:KEYWORDS . #:M.jannas.A:rem:SOURCE Methanococcus jannaschii. #:M.jannas.A:rem: ORGANISM Methanococcus jannaschii #:M.jannas.A:rem: Archaea; Euryarchaeota; Methanococcales; Methanococcaceae; #:M.jannas.A:rem: Methanococcus. #:M.jannas.A:rem:REFERENCE 1 (bases 1 to 14222) #:M.jannas.A:rem: AUTHORS Bult,C.J., White,O., Olsen,G.J., Zhou,L., Fleischmann,R.D., #:M.jannas.A:rem: Sutton,G.G., Blake,J.A., FitzGerald,L.M., Clayton,R.A., #:M.jannas.A:rem: Gocayne,J.D., Kerlavage,A.R., Dougherty,B.A., Tomb,J., Adams,M.D., #:M.jannas.A:rem: Reich,C.I., Overbeek,R., Kirkness,E.F., Weinstock,K.G., #:M.jannas.A:rem: Merrick,J.M., Glodek,A., Scott,J.D., Geoghagen,N.S., Weidman,J.F., #:M.jannas.A:rem: Fuhrmann,J.L., Nguyen,D.T., Utterback,T., Kelley,J.M., #:M.jannas.A:rem: Peterson,J.D., Sadow,P.W., Hanna,M.C., Cotton,M.D., Hurst,M.A., #:M.jannas.A:rem: Roberts,K.M., Kaine,B.B., Borodovsky,M., Klenk,H.P., Fraser,C.M., #:M.jannas.A:rem: Smith,H.O., Woese,C.R. and Venter,J.C. #:M.jannas.A:rem: TITLE Complete genome sequence of the methanogenic archaeon, #:M.jannas.A:rem: Methanococcus jannaschii #:M.jannas.A:rem: JOURNAL Science 273 (5278), 1058-1073 (1996) #:M.jannas.A:rem: MEDLINE 96337999 #:M.jannas.A:rem:REFERENCE 2 (bases 1 to 14222) #:M.jannas.A:rem: AUTHORS Bult,C.J., White,O., Olsen,G.J., Zhou,L., Fleischmann,R.D., #:M.jannas.A:rem: Sutton,G.G., Blake,J.A., FitzGerald,L.M., Clayton,R.A., #:M.jannas.A:rem: Gocayne,J.D., Kerlavage,A.R., Dougherty,B.A., Tomb,J., Adams,M.D., #:M.jannas.A:rem: Reich,C.I., Overbeek,R., Kirkness,E.F., Weinstock,K.G., #:M.jannas.A:rem: Merrick,J.M., Glodek,A., Scott,J.D., Geoghagen,N.S., Weidman,J.F., #:M.jannas.A:rem: Fuhrmann,J.L., Nguyen,D.T., Utterback,T., Kelley,J.M., #:M.jannas.A:rem: Peterson,J.D., Sadow,P.W., Hanna,M.C., Cotton,M.D., Hurst,M.A., #:M.jannas.A:rem: Roberts,K.M., Kaine,B.B., Borodovsky,M., Klenk,H.P., Fraser,C.M., #:M.jannas.A:rem: Smith,H.O., Woese,C.R. and Venter,J.C. #:M.jannas.A:rem: TITLE Direct Submission #:M.jannas.A:rem: JOURNAL Submitted (27-AUG-1996) The Institute for Genomic Research, 9712 #:M.jannas.A:rem: Medical Center Dr, Rockville, MD 20850, USA #:M.jannas.A:rem:COMMENT On Jan 30, 1998 this sequence version replaced gi:1590907. #:M.jannas.A:rem:FEATURES Location/Qualifiers #:M.jannas.A:rem: source 1..14222 #:M.jannas.A:rem: /organism="Methanococcus jannaschii" #:M.jannas.A:rem: /db_xref="taxon:2190" #:M.jannas.A:rem: rRNA complement(11233..14122) #:M.jannas.A:rem: /gene="MJrrnA23S" #:M.jannas.A:rem: /product="Ribosomal RNA" #:M.jannas.A:rem: gene complement(11233..14122) #:M.jannas.A:rem: /gene="MJrrnA23S" #:M.jannas.A:rem:BASE COUNT 4449 a 2720 c 3034 g 4019 t #:M.jannas.B:name:Methanococcus jannaschii #:M.jannas.B:subsp: #:M.jannas.B:strain: #:M.jannas.B:atcc: #:M.jannas.B:acs:U67517 #:M.jannas.B:auth:Gocayne,J.D., Kerlavage,A.R., Dougherty,B.A., Tomb,J.-F., Aams ... #:M.jannas.B:title: #:M.jannas.B:jour:Science #:M.jannas.B:who:Robin Gutell,MCDB-256,28595,7868901 #:M.jannas.B:date:Sat Aug 24 14:08:49 1996 #:M.jannas.B:rem:LOCUS U67517 12730 bp DNA BCT 28-JAN-1998 #:M.jannas.B:rem:DEFINITION Methanococcus jannaschii section 59 of 150 of the complete genome. #:M.jannas.B:rem:ACCESSION U67517 L77117 #:M.jannas.B:rem:NID g2826310 #:M.jannas.B:rem:KEYWORDS . #:M.jannas.B:rem:SOURCE Methanococcus jannaschii. #:M.jannas.B:rem: ORGANISM Methanococcus jannaschii #:M.jannas.B:rem: Archaea; Euryarchaeota; Methanococcales; Methanococcaceae; #:M.jannas.B:rem: Methanococcus. #:M.jannas.B:rem:REFERENCE 1 (bases 1 to 12730) #:M.jannas.B:rem: AUTHORS Bult,C.J., White,O., Olsen,G.J., Zhou,L., Fleischmann,R.D., #:M.jannas.B:rem: Sutton,G.G., Blake,J.A., FitzGerald,L.M., Clayton,R.A., #:M.jannas.B:rem: Gocayne,J.D., Kerlavage,A.R., Dougherty,B.A., Tomb,J., Adams,M.D., #:M.jannas.B:rem: Reich,C.I., Overbeek,R., Kirkness,E.F., Weinstock,K.G., #:M.jannas.B:rem: Merrick,J.M., Glodek,A., Scott,J.D., Geoghagen,N.S., Weidman,J.F., #:M.jannas.B:rem: Fuhrmann,J.L., Nguyen,D.T., Utterback,T., Kelley,J.M., #:M.jannas.B:rem: Peterson,J.D., Sadow,P.W., Hanna,M.C., Cotton,M.D., Hurst,M.A., #:M.jannas.B:rem: Roberts,K.M., Kaine,B.B., Borodovsky,M., Klenk,H.P., Fraser,C.M., #:M.jannas.B:rem: Smith,H.O., Woese,C.R. and Venter,J.C. #:M.jannas.B:rem: TITLE Complete genome sequence of the methanogenic archaeon, #:M.jannas.B:rem: Methanococcus jannaschii #:M.jannas.B:rem: JOURNAL Science 273 (5278), 1058-1073 (1996) #:M.jannas.B:rem: MEDLINE 96337999 #:M.jannas.B:rem:REFERENCE 2 (bases 1 to 12730) #:M.jannas.B:rem: AUTHORS Bult,C.J., White,O., Olsen,G.J., Zhou,L., Fleischmann,R.D., #:M.jannas.B:rem: Sutton,G.G., Blake,J.A., FitzGerald,L.M., Clayton,R.A., #:M.jannas.B:rem: Gocayne,J.D., Kerlavage,A.R., Dougherty,B.A., Tomb,J., Adams,M.D., #:M.jannas.B:rem: Reich,C.I., Overbeek,R., Kirkness,E.F., Weinstock,K.G., #:M.jannas.B:rem: Merrick,J.M., Glodek,A., Scott,J.D., Geoghagen,N.S., Weidman,J.F., #:M.jannas.B:rem: Fuhrmann,J.L., Nguyen,D.T., Utterback,T., Kelley,J.M., #:M.jannas.B:rem: Peterson,J.D., Sadow,P.W., Hanna,M.C., Cotton,M.D., Hurst,M.A., #:M.jannas.B:rem: Roberts,K.M., Kaine,B.B., Borodovsky,M., Klenk,H.P., Fraser,C.M., #:M.jannas.B:rem: Smith,H.O., Woese,C.R. and Venter,J.C. #:M.jannas.B:rem: TITLE Direct Submission #:M.jannas.B:rem: JOURNAL Submitted (27-AUG-1996) The Institute for Genomic Research, 9712 #:M.jannas.B:rem: Medical Center Dr, Rockville, MD 20850, USA #:M.jannas.B:rem:COMMENT On Jan 30, 1998 this sequence version replaced gi:1591419. #:M.jannas.B:rem:FEATURES Location/Qualifiers #:M.jannas.B:rem: source 1..12730 #:M.jannas.B:rem: /organism="Methanococcus jannaschii" #:M.jannas.B:rem: /db_xref="taxon:2190" #:M.jannas.B:rem: rRNA 9705..12653 #:M.jannas.B:rem: /gene="MJrrnB23S" #:M.jannas.B:rem: /product="Ribosomal RNA" #:M.jannas.B:rem: gene 9705..12653 #:M.jannas.B:rem: /gene="MJrrnB23S" #:M.jannas.B:rem:BASE COUNT 3786 a 2392 c 3166 g 3386 t #:M.vannieli:name:Methanococcus vannielli #:M.vannieli:subsp: #:M.vannieli:strain: #:M.vannieli:atcc:? #:M.vannieli:acs:X02729 #:M.vannieli:auth: #:M.vannieli:title: #:M.vannieli:jour:M.vannieli:who:published #:M.vannieli:who:published #:M.vannieli:date:Nov. 3 1985 #:M.vannieli:rem:Phylo:Archaebacteria,Methanogens and relatives,Methanococcales #:M.thermo.1:name:Methanobacterium thermoautotrophicum #:M.thermo.1:subsp: #:M.thermo.1:strain: #:M.thermo.1:atcc:? #:M.thermo.1:acs:X05482 #:M.thermo.1:auth: #:M.thermo.1:title: #:M.thermo.1:jour:Fri Apr 17 09:53:22 1987 checked #:M.thermo.1:who:published #:M.thermo.1:date:Fri Apr 17 09:53:22 1987 checked #:M.thermo.1:rem:Phylo:Archaebacteria,Methanogens and relatives,Methanobacteriales #:M.thermo.2:auth:Prabhakar,S., McDougall,S., Shimer,G., Goyal,A., Pietrovski,S., #:M.thermo.2:auth:Church,G.M., Daniels,C.J., Mao,J.-i., Rice,P., Nolling,J. and #:M.thermo.2:auth:Reeve,J.N. #:M.thermo.2:auth:Smith,D.R., Doucette-Stamm,L.A., Deloughery,C., Lee,H.-M., #:M.thermo.2:auth:Dubois,J., Aldredge,T., Bashirzadeh,R., Blakely,D., Cook,R., #:M.thermo.2:auth:Gilbert,K., Harrison,D., Hoang,L., Keagle,P., Lumm,W., Pothier #:M.thermo.2:title:comparative genomics #:M.thermo.2:auth:,B., Qiu,D., Spadafora,R., Vicare,R., Wang,Y., Wierzbowski,J., #:M.thermo.2:title:Complete genome sequence of Methanobacterium #:M.thermo.2:name:Methanobacterium thermoautotrophicum. #:M.thermo.2:subsp: #:M.thermo.2:strain: #:M.thermo.2:atcc: #:M.thermo.2:acs:AE000930 #:M.thermo.2:auth:Gibson,R., Jiwani,N., Caruso,A., Bush,D., Safer,H., Patwell,D., #:M.thermo.2:title:thermoautotrophicum delta H: functional analysis and #:M.thermo.2:jour:J. Bacteriol. 179, 7135-7155 (1997) #:M.thermo.2:who: #:M.thermo.2:date:13-NOV-1997 #:M.thermo.2:rem:ref:1 (bases 1 to 15553) #:M.thermo.2:rem:ref:2 (bases 1 to 15553) #:M.thermo.2:rem:auth:Smith,D.R. #:M.thermo.2:rem:jour:Submitted (10-AUG-1997) Genomics and Technology #:M.thermo.2:rem:: Development, Genome Therapuetics Corporation, 100 Beaver #:M.thermo.2:rem:: Street, Waltham, MA 02154-8448, USA #:M.thermo.2:rem:title:Direct Submission #:M.thermo.2:rem:KEYWORDS:. #:M.thermo.2:rem:GenBank ACCESSION:AE0009 0 AE00 666 #:M.thermo.3:auth:Gibson,R., Jiwani,N., Caruso,A., Bush,D., Safer,H., Patwell,D., #:M.thermo.3:auth:Prabhakar,S., McDougall,S., Shimer,G., Goyal,A., Pietrovski,S., #:M.thermo.3:auth:Church,G.M., Daniels,C.J., Mao,J.-i., Rice,P., Nolling,J. and #:M.thermo.3:auth:Reeve,J.N. #:M.thermo.3:auth:Smith,D.R., Doucette-Stamm,L.A., Deloughery,C., Lee,H.-M., #:M.thermo.3:auth:Dubois,J., Aldredge,T., Bashirzadeh,R., Blakely,D., Cook,R., #:M.thermo.3:title:thermoautotrophicum delta H: functional analysis and #:M.thermo.3:auth:Gilbert,K., Harrison,D., Hoang,L., Keagle,P., Lumm,W., Pothier #:M.thermo.3:title:comparative genomics #:M.thermo.3:name:Methanobacterium thermoautotrophicum. #:M.thermo.3:subsp: #:M.thermo.3:strain: #:M.thermo.3:atcc: #:M.thermo.3:acs:AE000940 #:M.thermo.3:auth:,B., Qiu,D., Spadafora,R., Vicare,R., Wang,Y., Wierzbowski,J., #:M.thermo.3:title:Complete genome sequence of Methanobacterium #:M.thermo.3:jour:J. Bacteriol. 179, 7135-7155 (1997) #:M.thermo.3:who: #:M.thermo.3:date:13-NOV-1997 #:M.thermo.3:rem:ref:1 (bases 1 to 15288) #:M.thermo.3:rem:ref:2 (bases 1 to 15288) #:M.thermo.3:rem:auth:Smith,D.R. #:M.thermo.3:rem:jour:Submitted (10-AUG-1997) Genomics and Technology #:M.thermo.3:rem:: Development, Genome Therapuetics Corporation, 100 Beaver #:M.thermo.3:rem:: Street, Waltham, MA 02154-8448, USA #:M.thermo.3:rem:title:Direct Submission #:M.thermo.3:rem:KEYWORDS:. #:M.thermo.3:rem:GenBank ACCESSION:AE0009 0 AE00 666 #:M.hungatei:name:Methanospirillum hungatei #:M.hungatei:subsp: #:M.hungatei:strain: #:M.hungatei:atcc: #:M.hungatei:acs:M81323 M61738 #:M.hungatei:auth:Burggraff,S., Ching,A., Stetter,K.O. and Woese,C.R. #:M.hungatei:title: #:M.hungatei:jour: #:M.hungatei:who: #:M.hungatei:date: #:M.hungatei:rem:LOCUS MEHRGSUB 2910 bp ss-rRNA RNA 10-JAN-1992 #:M.hungatei:rem:DEFINITION Methanospirillum hungatei 23S large subunit ribosomal RNA gene, #:M.hungatei:rem: complete cds. #:M.hungatei:rem:ACCESSION M81323 M61738 #:M.hungatei:rem:KEYWORDS 23S large subunit ribosomal RNA. #:M.hungatei:rem:SOURCE Methanospirillum hungatei (strain JF1) rRNA. #:M.hungatei:rem: ORGANISM Methanospirillum hungatei #:M.hungatei:rem: Prokaryota; Bacteria; Mendosicutes; Archaeobacteria; #:M.hungatei:rem: Methanobacteriales; Methanobacteriaceae. #:M.hungatei:rem:REFERENCE 1 (bases 1 to 2910) #:M.hungatei:rem: AUTHORS Burggraff,S., Ching,A., Stetter,K.O. and Woese,C.R. #:M.hungatei:rem: TITLE The sequence of Methanospirillum hungatei 23S rRNA confirms the #:M.hungatei:rem: specific relationship between the extreme halophiles and the #:M.hungatei:rem: methanomicrobiales #:M.hungatei:rem: JOURNAL Unpublished (1991) #:M.hungatei:rem: STANDARD simple staff_entry #:M.hungatei:rem:FEATURES Location/Qualifiers #:M.hungatei:rem: rRNA 1..2910 #:M.hungatei:rem: /note="typical archaeal type" #:M.hungatei:rem: /product="23S large subunit ribosomal RNA" #:M.hungatei:rem: /gene="23S rRNA" #:M.hungatei:rem:BASE COUNT 792 a 640 c 846 g 631 t 1 others #:M.hungatei:rem:ORIGIN #:H.halobium:name:Halobacterium halobium #:H.halobium:subsp: #:H.halobium:strain: #:H.halobium:atcc:? #:H.halobium:acs:X03407 #:H.halobium:auth: #:H.halobium:title: #:H.halobium:jour:152-161(1986) #:H.halobium:who:published #:H.halobium:date:March 24 1986 #:H.halobium:rem:Phylo:Archaebacteria,Methanogens and relatives,Halobacteria #:N.magadii:name:Natrialba magadii #:N.magadii:subsp:was Natronobacterium magadii #:N.magadii:strain: #:N.magadii:atcc: #:N.magadii:acs:X72495 #:N.magadii:auth:Lodwick D., Ross H.N.M., Walker J.A., Almond J.W., Grant W.D. #:N.magadii:title: #:N.magadii:jour: #:N.magadii:who: #:N.magadii:date: #:N.magadii:rem:ID NMRRNA standard; DNA; PRO; 5209 BP. #:N.magadii:rem:XX #:N.magadii:rem:AC X72495; #:N.magadii:rem:XX #:N.magadii:rem:DT 11-MAY-1993 (Rel. 35, Created) #:N.magadii:rem:DT 13-APR-1994 (Rel. 39, Last updated, Version 7) #:N.magadii:rem:XX #:N.magadii:rem:DE N.magadii rRNA operon #:N.magadii:rem:XX #:N.magadii:rem:KW 16S ribosomal RNA; 16S rRNA gene. #:N.magadii:rem:XX #:N.magadii:rem:OS Natronobacterium magadii #:N.magadii:rem:OC Prokaryota; Bacteria; Mendosicutes; Archaeobacteria; #:N.magadii:rem:OC Halobacteriales; Halobacteriaceae. #:N.magadii:rem:XX #:N.magadii:rem:RN [1] #:N.magadii:rem:RA Lodwick D., Ross H.N.M., Walker J.A., Almond J.W., Grant W.D.; #:N.magadii:rem:RT "Nucleotide Sequence of the 16S Ribosomal RNA Gene from the #:N.magadii:rem:RT Haloalkaliphilic Archaeon (Archaebacterium) Natrobacterium #:N.magadii:rem:RT magadii, and the Phylogeny of Halobacteria"; #:N.magadii:rem:RL Syst. Appl. Microbiol. 14:352-357(1991). #:N.magadii:rem:XX #:N.magadii:rem:RN [3] #:N.magadii:rem:RC sequence revised by author 15-NOV-93 #:N.magadii:rem:RP 1-5209 #:N.magadii:rem:RA Lodwick D.; #:N.magadii:rem:RT ; #:N.magadii:rem:RL Submitted (29-APR-1993) to the EMBL/GenBank/DDBJ databases. #:N.magadii:rem:RL D. Lodwick, University of Leicester, Dept of Medicine Clinical Sc #:N.magadii:rem:RL Bldg, Leicester Royal Infirmary, P O Box 65, Leicester LE2 7LX, UK #:N.magadii:rem:XX #:N.magadii:rem:FH Key Location/Qualifiers #:N.magadii:rem:FH #:N.magadii:rem:FT source 1..5209 #:N.magadii:rem:FT /organism="Natronobacterium magadii" #:N.magadii:rem:FT /strain="NCMB2190" #:N.magadii:rem:FT rRNA 157..1622 #:N.magadii:rem:FT /product="16S ribosomal RNA" #:N.magadii:rem:FT tRNA 1750..1824 #:N.magadii:rem:FT /product="transfer RNA-Ala" #:N.magadii:rem:FT rRNA 2028..4938 #:N.magadii:rem:FT /product="23S ribosomal RNA" #:N.magadii:rem:FT rRNA 5072..5196 #:N.magadii:rem:FT /product="5S ribosomal RNA" #:N.magadii:rem:XX #:N.magadii:rem:SQ Sequence 5209 BP; 1269 A; 1351 C; 1618 G; 971 T; 0 other; #:H.morrhuae:name:Halococcus morrhuae #:H.morrhuae:subsp: #:H.morrhuae:strain: #:H.morrhuae:atcc:? #:H.morrhuae:acs:X05481 #:H.morrhuae:auth: #:H.morrhuae:title: #:H.morrhuae:jour:Leffers,H., Kjems,J., Ostergaard,L., Larsen,N. and Garrett,R.A. #:H.morrhuae:who:published #:H.morrhuae:date:1986 #:H.morrhuae:rem:Phylo:Archaebacteria,Methanogens and relatives,Halobacteria #:H.morrhuae:rem:Leffers,H., Kjems,J., Ostergaard,L., Larsen,N. and Garrett,R.A. #:H.morrhuae:rem:Archaea; Euryarchaeota; Halobacteriales; Halobacteriaceae; Halococcu #:H.morrhuae:rem:Evolutionary relationships amongst archaebacteria. A comparative #:H.morrhuae:rem:study of 23 S ribosomal RNAs of a sulphur-dependent extreme #:H.morrhuae:rem:thermophile, an extreme halophile and a thermophilic methanogen #:H.morrhuae:rem:J. Mol. Biol. 195 (1), 43-61 (1987) #:H.marism.1:name:Halobacterium marismortui #:H.marism.1:subsp: #:H.marism.1:strain: #:H.marism.1:atcc: #:H.marism.1:acs:X137388 #:H.marism.1:auth: #:H.marism.1:title: #:H.marism.1:jour:Fri Jul 21 10:00:26 1989 #:H.marism.1:who:Robin Gutell #:H.marism.1:date:Fri Jul 21 10:00:26 1989 #:H.marism.2:title:Haloarcula marismortui #:H.marism.2:name:Haloarcula marismortui. #:H.marism.2:subsp: #:H.marism.2:strain: #:H.marism.2:atcc: #:H.marism.2:acs:AF034619 #:H.marism.2:auth:Dennis,P.P. and Mylvaganam,S. #:H.marism.2:title:Disparate ribosomal RNA operons in the halophilic archaeon #:H.marism.2:jour:Unpublished #:H.marism.2:who: #:H.marism.2:date:01-DEC-1997 #:H.marism.2:rem:ref:1 (bases 1 to 6178) #:H.marism.2:rem:ref:2 (bases 1 to 6178) #:H.marism.2:rem:auth:Mylvaganam,S. and Dennis,P.P. #:H.marism.2:rem:jour:Submitted (17-NOV-1997) Biochemsitry and Molecular #:H.marism.2:rem:: Biology, University of British Columbia, 2146Health #:H.marism.2:rem:: Sciences Mall, Vancouver, BC V6T 1Z3, Canada #:H.marism.2:rem:title:Direct Submission #:H.marism.2:rem:KEYWORDS:. #:H.marism.2:rem:GenBank ACCESSION:AF0346 9 #:H.marism.3:title:Haloarcula marismortui #:H.marism.3:name:Haloarcula marismortui. #:H.marism.3:subsp: #:H.marism.3:strain: #:H.marism.3:atcc: #:H.marism.3:acs:AF034620 #:H.marism.3:auth:Dennis,P.P. and Mylvaganam,S. #:H.marism.3:title:Disparate ribosomal RNA operons in the halophilic archaeon #:H.marism.3:jour:Unpublished #:H.marism.3:who: #:H.marism.3:date:01-DEC-1997 #:H.marism.3:rem:ref:1 (bases 1 to 5946) #:H.marism.3:rem:ref:2 (bases 1 to 5946) #:H.marism.3:rem:auth:Mylvaganam,S. and Dennis,P.P. #:H.marism.3:rem:jour:Submitted (17-NOV-1997) Biochemsitry and Molecular #:H.marism.3:rem:: Biology, University of British Columbia, 2146Health #:H.marism.3:rem:: Sciences Mall, Vancouver, BC V6T 1Z3, Canada #:H.marism.3:rem:title:Direct Submission #:H.marism.3:rem:KEYWORDS:. #:H.marism.3:rem:GenBank ACCESSION:AF0346 0 #:T.acidophi:name:Thermoplasma acidophilum #:T.acidophi:subsp: #:T.acidophi:strain: #:T.acidophi:atcc: #:T.acidophi:acs:M32298 M20822 #:T.acidophi:auth:Ree,H.K. and Zimmerman,R.A. #:T.acidophi:title: #:T.acidophi:jour: #:T.acidophi:who:Zimmerman #:T.acidophi:date: #:T.acidophi:rem:Phylo:Archaebacteria #:T.acidophi:rem:LOCUS THARGG 4154 bp ds-DNA BCT 15-SEP-1990 #:T.acidophi:rem:DEFINITION T.acidophilum 23S ribosomal RNA gene. #:T.acidophi:rem:ACCESSION M32298 M20822 #:T.acidophi:rem:KEYWORDS 23S ribosomal RNA. #:T.acidophi:rem:SOURCE T.acidophilum (strain 122-1B2) DNA, clones pTH1-1, pL8 and pTH3-7. #:T.acidophi:rem: ORGANISM Thermoplasma acidophilum #:T.acidophi:rem: Prokaryota; Bacteria; Mendosicutes; Archaeobacteria; #:T.acidophi:rem: Thermoplasmales. #:T.acidophi:rem:REFERENCE 1 (bases 1 to 4154) #:T.acidophi:rem: AUTHORS Ree,H.K. and Zimmerman,R.A. #:T.acidophi:rem: TITLE Organization and expression of the 16S, 23S and 5S ribosomal RNA #:T.acidophi:rem: genes from the archaebacterium Thermoplasma acidophilum #:T.acidophi:rem: JOURNAL Nucleic Acids Res. 18, 4471-4478 (1990) #:T.acidophi:rem: STANDARD full staff_review #:T.acidophi:rem:COMMENT Draft entry and computer-readable sequence for [Nucleic Acids Res. #:T.acidophi:rem: 18, 4471-4478 (1990)] kindly submitted #:T.acidophi:rem: by H.K.Ree 23-FEB-1990. #:T.acidophi:rem:FEATURES Location/Qualifiers #:T.acidophi:rem: misc_RNA 429..3473 #:T.acidophi:rem: /note="23S RNA gene (3' end +/- 5 bp)" #:T.acidophi:rem: rRNA 521..3426 #:T.acidophi:rem: /note="23S RNA" #:T.acidophi:rem:BASE COUNT 1097 a 903 c 1177 g 977 t #:A.fulgid.1:name:Archaeoglobus fulgidus #:A.fulgid.1:subsp: #:A.fulgid.1:strain: #:A.fulgid.1:atcc: #:A.fulgid.1:acs:M64487 #:A.fulgid.1:auth: #:A.fulgid.1:title: #:A.fulgid.1:jour: #:A.fulgid.1:who:Richter,Woese #:A.fulgid.1:date:1987 #:A.fulgid.1:rem:Phylo:Archaebacteria,? #:A.fulgid.1:rem:LOCUS ARFRRLSA 2933 bp ss-rRNA RNA 11-FEB-1992 #:A.fulgid.1:rem:DEFINITION A.fulgicus large subunit ribosomal RNA. #:A.fulgid.1:rem:ACCESSION M64487 #:A.fulgid.1:rem:KEYWORDS large subunit ribosomal RNA. #:A.fulgid.1:rem:SOURCE Archaeoglobus fulgicus (strain VC-16) rRNA. #:A.fulgid.1:rem: ORGANISM Archaeoglobus fulgicus #:A.fulgid.1:rem: Prokaryota; Bacteria; Gracilicutes; Scotobacteria; #:A.fulgid.1:rem: Sulfate- or sulfur-reducing dissimilatory bacteria. #:A.fulgid.1:rem:REFERENCE 1 (bases 1 to 2933) #:A.fulgid.1:rem: AUTHORS Woese,C.R., Achenbach,L., Rouviere,P. and Mandelco,L. #:A.fulgid.1:rem: TITLE Archaeal phylogeny: Reexamination of the phylogenetic position of #:A.fulgid.1:rem: Archaelglobus fulgidus in light of certain composition-induced #:A.fulgid.1:rem: artifacts #:A.fulgid.1:rem: JOURNAL Unpublished (1991) #:A.fulgid.1:rem: STANDARD full staff_review #:A.fulgid.1:rem:FEATURES Location/Qualifiers #:A.fulgid.1:rem: rRNA 1..2933 #:A.fulgid.1:rem: /product="large subunit ribosomal RNA" #:A.fulgid.1:rem:BASE COUNT 640 a 791 c 1045 g 456 t 1 others #:A.fulgid.1:rem:ORIGIN #:A.fulgid.2:auth:Fleischmann,R.D., Quackenbush,J., Lee,N.H., Sutton,G.G., Gill #:A.fulgid.2:auth:,S., Kirkness,E.F., Dougherty,B.A., McKenney,K., Adams,M.D., #:A.fulgid.2:auth:Loftus,B., Peterson,S., Reich,C.I., McNeil,L.K., Badger,J.H., #:A.fulgid.2:auth:Glodek,A., Zhou,L., Overbeek,R., Gocayne,J.D., Weidman,J.F., #:A.fulgid.2:auth:McDonald,L., Utterback,T., Cotton,M.D., Spriggs,T., Artiach,P., #:A.fulgid.2:auth:Kaine,B.P., Sykes,S.M., Sadow,P.W., D'Andrea,K.P., Bowman,C., #:A.fulgid.2:auth:Fujii,C., Garland,S.A., Mason,T.M., Olsen,G.J., Fraser,C.M., #:A.fulgid.2:auth:Smith,H.O., Woese,C.R. and Venter,J.C. #:A.fulgid.2:auth:Klenk,H.P., Clayton,R.A., Tomb,J., White,O., Nelson,K.E., #:A.fulgid.2:auth:Ketchum,K.A., Dodson,R.J., Gwinn,M., Hickey,E.K., Peterson,J.D #:A.fulgid.2:title:sulphate-reducing archaeon Archaeoglobus fulgidus #:A.fulgid.2:name:Archaeoglobus fulgidus. #:A.fulgid.2:subsp: #:A.fulgid.2:strain: #:A.fulgid.2:atcc: #:A.fulgid.2:acs:AE000966 (AE000782) #:A.fulgid.2:auth:., Richardson,D.L., Kerlavage,A.R., Graham,D.E., Kyrpides,N.C., #:A.fulgid.2:title:The complete genome sequence of the hyperthermopholic, #:A.fulgid.2:jour:Unpublished (1997) #:A.fulgid.2:who: #:A.fulgid.2:date:24-NOV-1997 #:A.fulgid.2:rem:ref:1 (bases 1 to 10740) #:A.fulgid.2:rem:ref:2 (bases 1 to 10740) #:A.fulgid.2:rem:auth:Klenk,H.P., Clayton,R.A., Tomb,J., White,O., Nelson,K.E., #:A.fulgid.2:rem:: Ketchum,K.A., Dodson,R.J., Gwinn,M., Hickey,E.K., Peterson, #:A.fulgid.2:rem:: J.D., Richardson,D.L., Kerlavage,A.R., Graham,D.E., #:A.fulgid.2:rem:: Kyrpides,N.C., Fleischmann,R.D., Quackenbush,J., Lee,N.H., #:A.fulgid.2:rem:: Sutton,G.G., Gill,S., Kirkness,E.F., Dougherty,B.A., #:A.fulgid.2:rem:: McKenney,K., Adams,M.D., Loftus,B., Peterson,S., Reich,C.I., #:A.fulgid.2:rem:: McNeil,L.K., Badger,J.H., Glodek,A., Zhou,L., Overbeek,R., #:A.fulgid.2:rem:: Gocayne,J.D., Weidman,J.F., McDonald,L., Utterback,T., #:A.fulgid.2:rem:: Cotton,M.D., Spriggs,T., Artiach,P., Kaine,B.P., Sykes,S.M., #:A.fulgid.2:rem:: Sadow,P.W., D'Andrea,K.P., Bowman,C., Fujii,C., Garland,S. #:A.fulgid.2:rem:: A., Mason,T.M., Olsen,G.J., Fraser,C.M., Smith,H.O., Woese, #:A.fulgid.2:rem:: C.R. and Venter,J.C. #:A.fulgid.2:rem:jour:Submitted (24-NOV-1997) The Institute for Genomic #:A.fulgid.2:rem:: Research, 9712 Medical Center Dr, Rockville, MD 20850, USA #:A.fulgid.2:rem:title:Direct Submission #:A.fulgid.2:rem:KEYWORDS:. #:A.fulgid.2:rem:GenBank ACCESSION:AE0009 6 AE00 782 #:T.celer:name:Thermococcus celer #:T.celer:subsp: #:T.celer:strain: #:T.celer:atcc: #:T.celer:acs:M67497 #:T.celer:auth:Woese,C.R. and Achenbach,L. #:T.celer:title: #:T.celer:jour: #:T.celer:who: #:T.celer:date: #:T.celer:rem:LOCUS THCLRRNA 3029 bp ss-rRNA RNA 14-APR-1992 #:T.celer:rem:DEFINITION T.celer 23S ribosomal RNA gene sequence. #:T.celer:rem:ACCESSION M67497 #:T.celer:rem:KEYWORDS 23S ribosomal RNA; large subunit ribosomal RNA. #:T.celer:rem:SOURCE Thermococcus celer (strain VU 13) rRNA. #:T.celer:rem: ORGANISM Thermococcus celer #:T.celer:rem: Prokaryota; Archaeobacteria; Methanobacteriales; Methanothermaceae. #:T.celer:rem:REFERENCE 1 (bases 1 to 3029) #:T.celer:rem: AUTHORS Woese,C.R. and Achenbach,L. #:T.celer:rem: TITLE The sequence of Thermococcus celer 23S rRNA #:T.celer:rem: JOURNAL Unpublished (1991) #:T.celer:rem: STANDARD full staff_entry #:T.celer:rem:FEATURES Location/Qualifiers #:T.celer:rem: rRNA 1..3029 #:T.celer:rem: /product="23S ribosomal RNA" #:T.celer:rem: /gene="23S rRNA" #:T.celer:rem:BASE COUNT 631 a 847 c 1096 g 455 t #:T.celer:rem:ORIGIN #:P.furiosus:name:Pyrococcus furiosus #:P.furiosus:subsp: #:P.furiosus:strain: #:P.furiosus:atcc: #:P.furiosus:acs:M86627 #:P.furiosus:auth:Kjems,J., Larsen,N., Dalgaard,J.Z., Garrett,R.A. and Stetter,K.O. #:P.furiosus:title: #:P.furiosus:jour: #:P.furiosus:who: #:P.furiosus:date: #:P.furiosus:rem:LOCUS PYWRGGA 2818 bp ds-DNA BCT 06-FEB-1992 #:P.furiosus:rem:DEFINITION P.furiosus 23S ribosomal RNA, partial cds. #:P.furiosus:rem:ACCESSION M86627 #:P.furiosus:rem:KEYWORDS 23S ribosomal RNA. #:P.furiosus:rem:SOURCE Pyrococcus furiosus DNA. #:P.furiosus:rem: ORGANISM Pyrococcus furiosus #:P.furiosus:rem: Prokaryota; Archaeobacteria; Thermococcales; Thermococcaceae. #:P.furiosus:rem:REFERENCE 1 (bases 1 to 2818) #:P.furiosus:rem: AUTHORS Kjems,J., Larsen,N., Dalgaard,J.Z., Garrett,R.A. and Stetter,K.O. #:P.furiosus:rem: TITLE Phylogenetic relationships amongst the hyperthermophilic archaea #:P.furiosus:rem: determined from partial 23S rRNA gene sequences #:P.furiosus:rem: JOURNAL Syst. Appl. Microbiol. (1992) In press #:P.furiosus:rem: STANDARD full staff_review #:P.furiosus:rem:FEATURES Location/Qualifiers #:P.furiosus:rem: rRNA 1..1656 #:P.furiosus:rem: /partial #:P.furiosus:rem: /product="23S ribosomal RNA" #:P.furiosus:rem: /standard_name="23S rRNA" #:P.furiosus:rem: 3'UTR 1657..2818 #:P.furiosus:rem: /standard_name="23S rRNA" #:P.furiosus:rem:BASE COUNT 647 a 666 c 876 g 526 t 103 others #:P.furiosus:rem:ORIGIN #:P.horikosh:auth:Kawarabayasi,Y., Sawada,M., Horikawa,H., Haikawa,Y., Hino,Y., #:P.horikosh:auth:Yamamoto,S., Sekine,M., Baba,S., Kosugi,H., Hosoyama,A., Nagai #:P.horikosh:auth:,Y., Sakai,M., Ogura,K., Otuka,R., Nakazawa,H., Takamiya,M., #:P.horikosh:auth:Ohfuku,Y., Funahashi,T., Tanaka,T., Kudoh,Y., Yamazaki,J., #:P.horikosh:title:Complete Sequence and Gene Organization of the Genome of a #:P.horikosh:auth:Kushida,N., Oguchi,A., Aoki,K., Nakamura,Y., Robb,T.F., #:P.horikosh:title:Hyper-thermophilic Archaebacterium, Pyrococcus horikoshii #:P.horikosh:name:Pyrococcus horikoshii strain OT3. #:P.horikosh:subsp: #:P.horikosh:strain: #:P.horikosh:atcc:ORIGINAL ACCESSION # AB009472 is no longer available from GB #:P.horikosh:acs:AP000001 #:P.horikosh:auth:Horikoshi,K., Masuchi,Y., Shizuya,H. and Kikuchi,H. #:P.horikosh:title:OT3 #:P.horikosh:jour:DNA Research 5, 55-76 (1998) #:P.horikosh:who: #:P.horikosh:date:26-JUN-1998 #:P.horikosh:rem:ref:1 (sites) #:P.horikosh:rem:ref:2 (bases 1 to 287000) #:P.horikosh:rem:auth:Tanaka,T., Kawarabayasi,Y. and Kikuchi,H. #:P.horikosh:rem:jour:Submitted (11-JUN-1998) to the DDBJ/EMBL/GenBank #:P.horikosh:rem:: databases. Yutaka Kawarabayasi, National Institute of #:P.horikosh:rem:: Technology and Evaluation, Biotechnology Center; 2Chome #:P.horikosh:rem:: 49-10 Nishihara, Shibuya-ku, Tokyo 151-0066, Japan (E-mail: #:P.horikosh:rem:: genomeOT3@nite.go.jp, Tel:+81-3-3481-8951, Fax: #:P.horikosh:rem:: +81-3-3481-8424) #:P.horikosh:rem:title:Direct Submission #:P.horikosh:rem:KEYWORDS:. #:P.horikosh:rem:GenBank ACCESSION:AP0000 1 #:P.horikosh:rem:Kawarabayasi, Y. is officially affiliated with the National #:P.horikosh:rem:Institute of Bioscience and Human-Technology, Tsukuba, Ibaraki #:P.horikosh:rem:305-0046, Japan. #:P.horikosh:rem:Robb, T. F. is at the Center of Marine Biotechnology, #:P.horikosh:rem:University of #:P.horikosh:rem:Maryland, Baltimore, MD, USA. #:P.horikosh:rem:Horikoshi, K. is at the Japan Marine Science and Technology #:P.horikosh:rem:Center, #:P.horikosh:rem:Yokosuka, Kanagawa 237-0061, Japan. #:P.horikosh:rem:Masuchi, Y. is at the University of Tokyo, Meguro, Tokyo #:P.horikosh:rem:153-0041, Japan. #:P.horikosh:rem:Shizuya, H. is at the California Institute of Technology, #:P.horikosh:rem:Pasadena, CA, USA. #:P.horikosh:rem:The other authors are at the National Institute of Technology and #:P.horikosh:rem:Evaluation, 2-49-10 Nishihara, Shibuya, Tokyo 151-0066, Japan. #:P.horikosh:rem:The sequence data of the fosmid clones for the entire genomic #:P.horikosh:rem:sequence are deposited in DDBJ/Genbank/EMBL with accession numbers #:P.horikosh:rem:AB009464-AB009531 #:P.horikosh:rem:All the sequence with length 100 codons or more between ATG or GTG #:P.horikosh:rem:and stop codon are defined as CDS #:P.horikosh:rem:Homology analysis is performed by Smith-Waterman algorithm against #:P.horikosh:rem:GenBank and GenPept release 103; EMBL release 52.0; SwissProt #:P.horikosh:rem:release 34.0; PIR-Protein release 54.0; and OWL release 29.5. #:P.horikosh:rem:E-mail address for comments and questions: genomeOT3@nite.go.jp #:P.horikosh:rem:Restriction map, ORF organization, sequence alignment and more #:P.horikosh:rem:information are available at W.W.W. site of Biotechnology Center, #:P.horikosh:rem:URL: http://www.bio.nite.go.jp/. #:P.horikosh:rem:ORIGINAL ACCESSION NUMBER: AB009472 (no longer available from GenBank) #:CRENARCHAE:name: #:CRENARCHAE:subsp: #:CRENARCHAE:strain: #:CRENARCHAE:atcc: #:CRENARCHAE:acs:DIVIDER #:CRENARCHAE:auth: #:CRENARCHAE:title: #:CRENARCHAE:jour: #:CRENARCHAE:who:Robin Gutell,MCDB-256,28595,7868901 #:CRENARCHAE:date:Fri Dec 31 13:58:19 1993 #:Pb.islandi:name:Pyrobaculum islandicum #:Pb.islandi:subsp: #:Pb.islandi:strain: #:Pb.islandi:atcc: #:Pb.islandi:acs:M86622 #:Pb.islandi:auth:Kjems,J., Larsen,N., Dalgaard,J.Z., Garrett,R.A. and Stetter,K.O. #:Pb.islandi:title: #:Pb.islandi:jour: #:Pb.islandi:who: #:Pb.islandi:date: #:Pb.islandi:rem:(JJC; 27 January 1999) #:Pb.islandi:rem:The accession number M86622 is referenced in Dalgaard and Garrett, Gene, 121 #:Pb.islandi:rem:(1992):103-110 for Pyrobaculum organotrophum. The flanking sequence for the #:Pb.islandi:rem:two introns is identical. Is the GenBank entry misnamed? The most recent #:Pb.islandi:rem:taxon file lists the two organisms as separate entries. #:Pb.islandi:rem:--------------------------------------- #:Pb.islandi:rem:LOCUS PYBRGGA 3358 bp ds-DNA BCT 06-FEB-1992 #:Pb.islandi:rem:DEFINITION P.islandicum 23S ribosomal RNA, partial cds. #:Pb.islandi:rem:ACCESSION M86622 #:Pb.islandi:rem:KEYWORDS 23S ribosomal RNA. #:Pb.islandi:rem:SOURCE Pyrobaculum islandicum DNA. #:Pb.islandi:rem: ORGANISM Pyrobaculum islandicum #:Pb.islandi:rem: Prokaryota; Archaeobacteria; Thermoproteales. #:Pb.islandi:rem:REFERENCE 1 (bases 1 to 3358) #:Pb.islandi:rem: AUTHORS Kjems,J., Larsen,N., Dalgaard,J.Z., Garrett,R.A. and Stetter,K.O. #:Pb.islandi:rem: TITLE Phylogenetic relationships amongst the hyperthermophilic archaea #:Pb.islandi:rem: determined from partial 23S rRNA gene sequences #:Pb.islandi:rem: JOURNAL Syst. Appl. Microbiol. (1992) In press #:Pb.islandi:rem: STANDARD full staff_review #:Pb.islandi:rem:FEATURES Location/Qualifiers #:Pb.islandi:rem: rRNA 1..2616 #:Pb.islandi:rem: /partial #:Pb.islandi:rem: /product="23S ribosomal RNA" #:Pb.islandi:rem: /standard_name="23S rRNA" #:Pb.islandi:rem: 3'UTR 2617..3358 #:Pb.islandi:rem:BASE COUNT 578 a 922 c 1181 g 561 t 116 others #:Pb.islandi:rem:ORIGIN #:T.tenax:name:Thermoproteus tenax #:T.tenax:subsp: #:T.tenax:strain: #:T.tenax:atcc: #:T.tenax:acs:published, no accession # #:T.tenax:auth: #:T.tenax:title: #:T.tenax:jour: #:T.tenax:who: #:T.tenax:date: #:T.tenax:rem:ref: #:T.tenax:rem:Kjems, J., Leffers, H., Garrett R.A., Wich G., Leinfelder W., and Bock A. #:T.tenax:rem:1987, Nucleic Acids Research 15:4821-4835. #:T.tenax:rem:Gene organization, transcription signals and processing of the single ribosomal RN #:T.tenax:rem:RNA operon of the archaebacterium Thermoproteus tenax #:P.occultum:name:Pyrodictium occultum #:P.occultum:subsp: #:P.occultum:strain: #:P.occultum:atcc: #:P.occultum:acs:M86626 #:P.occultum:auth:Kjems,J., Larsen,N., Dalgaard,J.Z., Garrett,R.A. and Stetter,K.O. #:P.occultum:title: #:P.occultum:jour: #:P.occultum:who: #:P.occultum:date: #:P.occultum:rem:LOCUS PYRRGGA 3865 bp ds-DNA BCT 06-FEB-1992 #:P.occultum:rem:DEFINITION P.occultum 23S ribosomal RNA, partial cds. #:P.occultum:rem:ACCESSION M86626 #:P.occultum:rem:KEYWORDS 23S ribosomal RNA. #:P.occultum:rem:SOURCE Pyrodictium occultum DNA. #:P.occultum:rem: ORGANISM Pyrodictium occultum #:P.occultum:rem: Prokaryota; Archaeobacteria; Pyrodictiales. #:P.occultum:rem:REFERENCE 1 (bases 1 to 3865) #:P.occultum:rem: AUTHORS Kjems,J., Larsen,N., Dalgaard,J.Z., Garrett,R.A. and Stetter,K.O. #:P.occultum:rem: TITLE Phylogenetic relationships amongst the hyperthermophilic archaea #:P.occultum:rem: determined from partial 23S rRNA gene sequences #:P.occultum:rem: JOURNAL Syst. Appl. Microbiol. (1992) In press #:P.occultum:rem: STANDARD full staff_review #:P.occultum:rem:FEATURES Location/Qualifiers #:P.occultum:rem: rRNA 1..1673 #:P.occultum:rem: /partial #:P.occultum:rem: /product="23S ribosomal RNA" #:P.occultum:rem: /standard_name="23S rRNA" #:P.occultum:rem: 3'UTR 1674..3865 #:P.occultum:rem: /standard_name="23S rRNA" #:P.occultum:rem:BASE COUNT 535 a 1165 c 1450 g 647 t 68 others #:P.occultum:rem:ORIGIN #:A.pern.OH2:title:presence of multiple hotspots for intron homing #:A.pern.OH2:title:Intraspecific genetic polymorphism in the rRNA gene locus of #:A.pern.OH2:name:Aeropyrum pernix. #:A.pern.OH2:subsp: #:A.pern.OH2:strain: #:A.pern.OH2:atcc: #:A.pern.OH2:acs:AB019552 #:A.pern.OH2:auth:Nomura,N., Sako,Y., Morinaga,Y., Kogishi,T. and Uchida,A. #:A.pern.OH2:title:the hyperthermophilic archaeon Aeropyrum pernix, implying the #:A.pern.OH2:jour:Unpublished (1998) #:A.pern.OH2:who: #:A.pern.OH2:date:11-NOV-1998 #:A.pern.OH2:rem:ref:1 (sites) #:A.pern.OH2:rem:ref:2 (bases 1 to 4883) #:A.pern.OH2:rem:auth:Nomura,N. #:A.pern.OH2:rem:jour:Submitted (05-NOV-1998) to the DDBJ/EMBL/GenBank #:A.pern.OH2:rem:: databases. Norimichi Nomura, Kyoto University, Lab. of #:A.pern.OH2:rem:: Marine Microbiology, Graduate School of Agriculture; #:A.pern.OH2:rem:: Kitashirakawa-Oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan #:A.pern.OH2:rem:: (E-mail:j54718@sakura.kudpc.kyoto-u.ac.jp, Tel: #:A.pern.OH2:rem:: 81-75-753-6219, Fax:81-75-753-6226) #:A.pern.OH2:rem:title:Direct Submission #:A.pern.OH2:rem:KEYWORDS:16S rRNA; 23S rRNA; 16S ribosomal RNA; 23S ribosomal #:A.pern.OH2:rem:: RNA; internal transcribed spacer region. #:A.pern.OH2:rem:GenBank ACCESSION:AB019552 #:A.pern.K1:title:hyperthermophilic archaeon Aeropyrum pernix K1 #:A.pern.K1:title:Molecular characterization and postsplicing fate of three #:A.pern.K1:name:Aeropyrum pernix. #:A.pern.K1:subsp: #:A.pern.K1:strain: #:A.pern.K1:atcc: #:A.pern.K1:acs:AB008745 #:A.pern.K1:auth:Nomura,N., Sako,Y. and Uchida,A. #:A.pern.K1:title:introns within the single rRNA operon of the #:A.pern.K1:jour:J. Bacteriol. 180 (14), 3635-3643 (1998) #:A.pern.K1:who: #:A.pern.K1:date:07-AUG-1998 #:A.pern.K1:rem:ref:1 (sites) #:A.pern.K1:rem:ref:2 (bases 1 to 10717) #:A.pern.K1:rem:auth:Nomura,N. #:A.pern.K1:rem:jour:Submitted (06-NOV-1997) to the DDBJ/EMBL/GenBank #:A.pern.K1:rem:: databases. Norimichi Nomura, Kyoto University, Lab. of #:A.pern.K1:rem:: Marine Microbiology, Graduate School of Agriculture; #:A.pern.K1:rem:: Kitashirakawa-Oiwake-cho, Sakyo-ku, Kyoto, Kyoto 606-01, #:A.pern.K1:rem:: Japan (E-mail:j54718@sakura.kudpc.kyoto-u.ac.jp, Tel: #:A.pern.K1:rem:: 075-753-6219, Fax:075-753-6226) #:A.pern.K1:rem:title:Direct Submission #:A.pern.K1:rem:KEYWORDS:16S rRNA; 16S ribosomal RNA; 23S rRNA; 23S ribosomal #:A.pern.K1:rem:: RNA; rRNA intron-encoded homing endonuclease. #:A.pern.K1:rem:GenBank ACCESSION:AB008745 #:A.pern.TB1:title:the hyperthermophilic archaeon Aeropyrum pernix, implying the #:A.pern.TB1:title:presence of multiple hotspots for intron homing #:A.pern.TB1:name:Aeropyrum pernix. #:A.pern.TB1:subsp: #:A.pern.TB1:strain: #:A.pern.TB1:atcc: #:A.pern.TB1:acs:AB019553 #:A.pern.TB1:auth:Nomura,N., Sako,Y., Morinaga,Y., Kogishi,T. and Uchida,A. #:A.pern.TB1:title:Intraspecific genetic polymorphism in the rRNA gene locus of #:A.pern.TB1:jour:Unpublished (1998) #:A.pern.TB1:who: #:A.pern.TB1:date:11-NOV-1998 #:A.pern.TB1:rem:ref:1 (sites) #:A.pern.TB1:rem:ref:2 (bases 1 to 5268) #:A.pern.TB1:rem:auth:Nomura,N. #:A.pern.TB1:rem:jour:Submitted (05-NOV-1998) to the DDBJ/EMBL/GenBank #:A.pern.TB1:rem:: databases. Norimichi Nomura, Kyoto University, Lab. of #:A.pern.TB1:rem:: Marine Microbiology, Graduate School of Agriculture; #:A.pern.TB1:rem:: Kitashirakawa-Oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan #:A.pern.TB1:rem:: (E-mail:j54718@sakura.kudpc.kyoto-u.ac.jp, Tel: #:A.pern.TB1:rem:: 81-75-753-6219, Fax:81-75-753-6226) #:A.pern.TB1:rem:title:Direct Submission #:A.pern.TB1:rem:KEYWORDS:16S rRNA; 16S ribosomal RNA; 23S ribosomal RNA; 23S #:A.pern.TB1:rem:: rRNA; internal transcribed spacer region. #:A.pern.TB1:rem:GenBank ACCESSION:AB019553 #:A.pern.TB7:title:the hyperthermophilic archaeon Aeropyrum pernix, implying the #:A.pern.TB7:title:presence of multiple hotspots for intron homing #:A.pern.TB7:name:Aeropyrum pernix. #:A.pern.TB7:subsp: #:A.pern.TB7:strain: #:A.pern.TB7:atcc: #:A.pern.TB7:acs:AB019554 #:A.pern.TB7:auth:Nomura,N., Sako,Y., Morinaga,Y., Kogishi,T. and Uchida,A. #:A.pern.TB7:title:Intraspecific genetic polymorphism in the rRNA gene locus of #:A.pern.TB7:jour:Unpublished (1998) #:A.pern.TB7:who: #:A.pern.TB7:date:11-NOV-1998 #:A.pern.TB7:rem:ref:1 (sites) #:A.pern.TB7:rem:ref:2 (bases 1 to 5324) #:A.pern.TB7:rem:auth:Nomura,N. #:A.pern.TB7:rem:jour:Submitted (05-NOV-1998) to the DDBJ/EMBL/GenBank #:A.pern.TB7:rem:: databases. Norimichi Nomura, Kyoto University, Lab. of #:A.pern.TB7:rem:: Marine Microbiology, Graduate School of Agriculture; #:A.pern.TB7:rem:: Kitashirakawa-Oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan #:A.pern.TB7:rem:: (E-mail:j54718@sakura.kudpc.kyoto-u.ac.jp, Tel: #:A.pern.TB7:rem:: 81-75-753-6219, Fax:81-75-753-6226) #:A.pern.TB7:rem:title:Direct Submission #:A.pern.TB7:rem:KEYWORDS:16S rRNA; 16S ribosomal RNA; 23S ribosomal RNA; 23S #:A.pern.TB7:rem:: rRNA; internal transcribed spacer region. #:A.pern.TB7:rem:GenBank ACCESSION:AB019554 #:S.marinu.1:name:Staphylothermus marinus #:S.marinu.1:subsp: #:S.marinu.1:strain: #:S.marinu.1:atcc: #:S.marinu.1:acs:M38363 #:S.marinu.1:auth:Kjems,J. and Garrett,R.A. #:S.marinu.1:title: #:S.marinu.1:jour: #:S.marinu.1:who: #:S.marinu.1:date: #:S.marinu.1:rem:LOCUS SPYRRGQ 2158 bp ds-DNA BCT 25-JAN-1991 #:S.marinu.1:rem:DEFINITION S.marinus 23S rRNA gene, introns. #:S.marinu.1:rem:ACCESSION M38363 #:S.marinu.1:rem:KEYWORDS 23S ribosomal RNA. #:S.marinu.1:rem:SOURCE Staphylothermus marinus DNA. #:S.marinu.1:rem: ORGANISM Staphylothermus marinus #:S.marinu.1:rem: Prokaryota; Bacteria; Mendosicutes; Archaeobacteria; #:S.marinu.1:rem: Thermoproteales; Desulfurococcaceae. #:S.marinu.1:rem:REFERENCE 1 (bases 1 to 2158) #:S.marinu.1:rem: AUTHORS Kjems,J. and Garrett,R.A. #:S.marinu.1:rem: TITLE New ribosomal RNA introns in archaea and evidence for RNA #:S.marinu.1:rem: conformational changes associated with splicing #:S.marinu.1:rem: JOURNAL Proc. Natl. Acad. Sci. U.S.A. (1990) In press #:S.marinu.1:rem: STANDARD simple staff_entry #:S.marinu.1:rem:COMMENT Draft entry and computer-readable sequence for [Proc. Natl. Acad. #:S.marinu.1:rem: Sci. U.S.A. (1990) In press] kindly submitted #:S.marinu.1:rem: by R.A.Garrett, 07-SEP-1990. #:S.marinu.1:rem:FEATURES Location/Qualifiers #:S.marinu.1:rem: rRNA join(<1..681,738..1411, #:S.marinu.1:rem: 1466..>2158) #:S.marinu.1:rem: /partial #:S.marinu.1:rem: /product="23s rRNA" #:S.marinu.1:rem: intron 682..737 #:S.marinu.1:rem: intron 1412..1465 #:S.marinu.1:rem:BASE COUNT 447 a 645 c 727 g 339 t #:S.marinu.1:rem:ORIGIN #:S.marinu.1:rem:SPYRGGA:LOCUS SPYRGGA 2828 bp ds-DNA BCT 06-FEB-1992 #:S.marinu.1:rem:SPYRGGA:DEFINITION S.marinus 23S ribosomal RNA, partial cds. #:S.marinu.1:rem:SPYRGGA:ACCESSION M86623 #:S.marinu.1:rem:SPYRGGA:KEYWORDS 23S ribosomal RNA. #:S.marinu.1:rem:SPYRGGA:SOURCE Staphylothermus marinus DNA. #:S.marinu.1:rem:SPYRGGA: ORGANISM Staphylothermus marinus #:S.marinu.1:rem:SPYRGGA: Prokaryota; Archaeobacteria; Thermoproteales. #:S.marinu.1:rem:SPYRGGA:REFERENCE 1 (bases 1 to 2828) #:S.marinu.1:rem:SPYRGGA: AUTHORS Kjems,J., Larsen,N., Dalgaard,J.Z., Garrett,R.A. and Stetter,K.O. #:S.marinu.1:rem:SPYRGGA: TITLE Phylogenetic relationships amongst the hyperthermophilic archaea #:S.marinu.1:rem:SPYRGGA: determined from partial 23S rRNA gene sequences #:S.marinu.1:rem:SPYRGGA: JOURNAL Syst. Appl. Microbiol. (1992) In press #:S.marinu.1:rem:SPYRGGA: STANDARD full staff_review #:S.marinu.1:rem:SPYRGGA:FEATURES Location/Qualifiers #:S.marinu.1:rem:SPYRGGA: rRNA join(<1..681,738..1411,1466..1789) #:S.marinu.1:rem:SPYRGGA: /product="23S ribosomal RNA" #:S.marinu.1:rem:SPYRGGA: /standard_name="23S rRNA" #:S.marinu.1:rem:SPYRGGA: /partial #:S.marinu.1:rem:SPYRGGA: intron 682..737 #:S.marinu.1:rem:SPYRGGA: /number=1 #:S.marinu.1:rem:SPYRGGA: /standard_name="23S rRNA" #:S.marinu.1:rem:SPYRGGA: intron 1412..1465 #:S.marinu.1:rem:SPYRGGA: /number=2 #:S.marinu.1:rem:SPYRGGA: /standard_name="23S rRNA" #:S.marinu.1:rem:SPYRGGA: 3'UTR 1790..2828 #:S.marinu.1:rem:SPYRGGA: /standard_name="23S rRNA" #:S.marinu.1:rem:SPYRGGA:BASE COUNT 649 a 789 c 809 g 572 t 9 others #:S.marinu.1:rem:SPYRGGA:ORIGIN #:S.marinu.2:title:stable circles in the hyperthermophilic archaeon Pyrobaculum #:S.marinu.2:title:organotrophum #:S.marinu.2:name:Staphylothermus marinus. #:S.marinu.2:subsp: #:S.marinu.2:strain: #:S.marinu.2:atcc: #:S.marinu.2:acs:M86623 #:S.marinu.2:auth:Dalgaard,J.Z. and Garrett,R.A. #:S.marinu.2:title:Protein-coding introns from the 23S rRNA-encoding gene form #:S.marinu.2:jour:Gene 121, 103-110 (1992) #:S.marinu.2:who: #:S.marinu.2:date:14-JAN-1993 #:S.marinu.2:rem:LOCUS SPYRGGA 2828 bp DNA BCT 14-JAN-1993 #:S.marinu.2:rem:DEFINITION S.marinus 23S ribosomal RNA, partial cds. #:S.marinu.2:rem:ACCESSION M86623 #:S.marinu.2:rem:NID g152908 #:S.marinu.2:rem:KEYWORDS 23S ribosomal RNA. #:S.marinu.2:rem:SOURCE Staphylothermus marinus DNA. #:S.marinu.2:rem: ORGANISM Staphylothermus marinus #:S.marinu.2:rem: Archaea; Crenarchaeota; Thermoproteales; Staphylothermus. #:S.marinu.2:rem:REFERENCE 1 (bases 1 to 2828) #:S.marinu.2:rem: AUTHORS Dalgaard,J.Z. and Garrett,R.A. #:S.marinu.2:rem: TITLE Protein-coding introns from the 23S rRNA-encoding gene form stable #:S.marinu.2:rem: circles in the hyperthermophilic archaeon Pyrobaculum organotrophum #:S.marinu.2:rem: JOURNAL Gene 121, 103-110 (1992) #:S.marinu.2:rem: MEDLINE 93051344 #:S.marinu.2:rem:FEATURES Location/Qualifiers #:S.marinu.2:rem: source 1..2828 #:S.marinu.2:rem: /organism="Staphylothermus marinus" #:S.marinu.2:rem: /db_xref="taxon:2280" #:S.marinu.2:rem: rRNA join(<1..681,738..1411,1466..1789) #:S.marinu.2:rem: /gene="23S rRNA" #:S.marinu.2:rem: /product="23S ribosomal RNA" #:S.marinu.2:rem: gene join(<1..681,738..1411,1466..1789) #:S.marinu.2:rem: /gene="23S rRNA" #:S.marinu.2:rem: intron 682..737 #:S.marinu.2:rem: /gene="23S rRNA" #:S.marinu.2:rem: /number=1 #:S.marinu.2:rem: intron 1412..1465 #:S.marinu.2:rem: /gene="23S rRNA" #:S.marinu.2:rem: /number=2 #:S.marinu.2:rem: 3'UTR 1790..2828 #:S.marinu.2:rem: /gene="23S rRNA" #:S.marinu.2:rem:BASE COUNT 649 a 789 c 809 g 572 t 9 others #:D.mobilis:name:Desulfurococcus mobilis #:D.mobilis:subsp: #:D.mobilis:strain: #:D.mobilis:atcc:? #:D.mobilis:acs:X05480 #:D.mobilis:auth: #:D.mobilis:title: #:D.mobilis:jour:Nov 16, 1986 #:D.mobilis:who:published #:D.mobilis:date:Nov 16, 1986 #:D.mobilis:rem:Phylo:Archaebacteria,Sulfur-dependent,Desulfurococcus #:S.shibatae:name:Sulfolobus shibatae #:S.shibatae:subsp: #:S.shibatae:strain: #:S.shibatae:atcc: #:S.shibatae:acs:U32321 #:S.shibatae:auth:Trevisanato,S.I., Segerer,A.H., Stetter,K.O. and Garrett,R.A. #:S.shibatae:title: #:S.shibatae:jour: #:S.shibatae:who: #:S.shibatae:date: #:S.shibatae:rem:LOCUS SSU32321 3157 bp DNA BCT 15-AUG-1995 #:S.shibatae:rem:DEFINITION Sulfolobus shibatae 23S rRNA gene, partial sequence. #:S.shibatae:rem:ACCESSION U32321 #:S.shibatae:rem:KEYWORDS . #:S.shibatae:rem:SOURCE Sulfolobus shibatae. #:S.shibatae:rem: ORGANISM Sulfolobus shibatae #:S.shibatae:rem: Archaea; Crenarchaeota; Sulfolobales; Sulfolobus. #:S.shibatae:rem:REFERENCE 1 (bases 1 to 3157) #:S.shibatae:rem: AUTHORS Trevisanato,S.I., Segerer,A.H., Stetter,K.O. and Garrett,R.A. #:S.shibatae:rem: TITLE Phylogenetic analysis of the Archaeal order of Sulfolobales based #:S.shibatae:rem: on sequences of 23S rRNA genes and 16S/23S rRNA spacers #:S.shibatae:rem: JOURNAL Unpublished (1995) #:S.shibatae:rem:REFERENCE 2 (bases 1 to 3157) #:S.shibatae:rem: AUTHORS Trevisanato,S.I. #:S.shibatae:rem: TITLE Direct Submission #:S.shibatae:rem: JOURNAL Submitted (25-JUL-1995) Siro I. Trevisanato, Princess Margaret #:S.shibatae:rem: Hospital, Ontario Cancer Institute, 500 Sherbourne Street, Toronto, #:S.shibatae:rem: Ontario M4X 1K9, Canada #:S.shibatae:rem:COMMENT #:S.shibatae:rem: NCBI gi: 942630 #:S.shibatae:rem:FEATURES Location/Qualifiers #:S.shibatae:rem: source 1..3157 #:S.shibatae:rem: /organism="Sulfolobus shibatae" #:S.shibatae:rem: /isolate="DSM 5389" #:S.shibatae:rem: misc_feature <1..185 #:S.shibatae:rem: /note="16S/23S rRNA spacer region" #:S.shibatae:rem: rRNA 186..>3157 #:S.shibatae:rem: /product="23S rRNA" #:S.shibatae:rem:BASE COUNT 696 a 845 c 1089 g 512 t 15 others #:S.shibatae:rem:ORIGIN #:S.solfatar:name:Sulfolobus solfataricus #:S.solfatar:subsp: #:S.solfatar:strain: #:S.solfatar:atcc: #:S.solfatar:acs:U32322 #:S.solfatar:auth:Trevisanato,S.I., Segerer,A.H., Stetter,K.O. and Garrett,R.A. #:S.solfatar:title: #:S.solfatar:jour: #:S.solfatar:who: #:S.solfatar:date: #:S.solfatar:rem:LOCUS SSU32322 3229 bp DNA BCT 15-AUG-1995 #:S.solfatar:rem:DEFINITION Sulfolobus solfataricus 23S rRNA gene, partial sequence. #:S.solfatar:rem:ACCESSION U32322 #:S.solfatar:rem:KEYWORDS . #:S.solfatar:rem:SOURCE Sulfolobus solfataricus. #:S.solfatar:rem: ORGANISM Sulfolobus solfataricus #:S.solfatar:rem: Archaea; Crenarchaeota; Sulfolobales; Sulfolobus. #:S.solfatar:rem:REFERENCE 1 (bases 1 to 3229) #:S.solfatar:rem: AUTHORS Trevisanato,S.I., Segerer,A.H., Stetter,K.O. and Garrett,R.A. #:S.solfatar:rem: TITLE Phylogenetic analysis of the Archaeal order of Sulfolobales based #:S.solfatar:rem: on sequences of 23S rRNA genes and 16S/23S rRNA spacers #:S.solfatar:rem: JOURNAL Unpublished (1995) #:S.solfatar:rem:REFERENCE 2 (bases 1 to 3229) #:S.solfatar:rem: AUTHORS Trevisanato,S.I. #:S.solfatar:rem: TITLE Direct Submission #:S.solfatar:rem: JOURNAL Submitted (25-JUL-1995) Siro I. Trevisanato, Princess Margaret #:S.solfatar:rem: Hospital, Ontario Cancer Institute, 500 Sherbourne Street, Toronto, #:S.solfatar:rem: Ontario M4X 1K9, Canada #:S.solfatar:rem:COMMENT #:S.solfatar:rem: NCBI gi: 942631 #:S.solfatar:rem:FEATURES Location/Qualifiers #:S.solfatar:rem: source 1..3229 #:S.solfatar:rem: /organism="Sulfolobus solfataricus" #:S.solfatar:rem: /isolate="DSM 1616" #:S.solfatar:rem: misc_feature <1..186 #:S.solfatar:rem: /note="16S/23S rRNA spacer region" #:S.solfatar:rem: rRNA 187..>3229 #:S.solfatar:rem: /product="23S rRNA" #:S.solfatar:rem:BASE COUNT 704 a 867 c 1117 g 527 t 14 others #:S.solfatar:rem:ORIGIN #:S.acidoc.1:name:Sulfolobus acidocaldarius #:S.acidoc.1:subsp:Now this strain is known to be Sulfolobus acidocaldarius #:S.acidoc.1:strain:previously called Sulfolobus solfataricus #:S.acidoc.1:atcc:? #:S.acidoc.1:acs:M67495 #:S.acidoc.1:auth: #:S.acidoc.1:title: #:S.acidoc.1:jour:S.solfataricus:who:published #:S.acidoc.1:who:published #:S.acidoc.1:date:May 9 1985,Jan 6 1986 #:S.acidoc.1:rem:Phylo:Archaebacteria,Sulfur-dependent,Sulfolobus #:S.acidoc.1:rem:LOCUS SSORGLSA 3033 bp ds-DNA BCT 13-NOV-1991 #:S.acidoc.1:rem:DEFINITION S.solfataricus large subunit ribosomal RNA gene, complete cds. #:S.acidoc.1:rem:ACCESSION M67495 #:S.acidoc.1:rem:KEYWORDS large subunit ribosomal RNA. #:S.acidoc.1:rem:SOURCE Sulfolobus solfataricus (strain DSM 1616) DNA. #:S.acidoc.1:rem: ORGANISM Sulfolobus solfataricus #:S.acidoc.1:rem: Prokaryota; Bacteria; Mendosicutes; Archaeobacteria; Sulfolobales. #:S.acidoc.1:rem:REFERENCE 1 (bases 1 to 3033) #:S.acidoc.1:rem: AUTHORS Woese,C.R. #:S.acidoc.1:rem: JOURNAL Unpublished (1991) #:S.acidoc.1:rem: STANDARD full staff_entry #:S.acidoc.1:rem:FEATURES Location/Qualifiers #:S.acidoc.1:rem: rRNA <1..>3033 #:S.acidoc.1:rem: /product="large subunit ribosomal RNA" #:S.acidoc.1:rem:BASE COUNT 699 a 803 c 1029 g 502 t #:S.acidoc.1:rem:ORIGIN #:S.acidoc.1:rem:LOCUS SSORGLSA 3033 bp ds-DNA BCT 13-NOV-1991 #:S.acidoc.1:rem:DEFINITION S.solfataricus large subunit ribosomal RNA gene, complete cds. #:S.acidoc.1:rem:ACCESSION M67495 #:S.acidoc.1:rem:KEYWORDS large subunit ribosomal RNA. #:S.acidoc.1:rem:SOURCE Sulfolobus solfataricus (strain DSM 1616) DNA. #:S.acidoc.1:rem: ORGANISM Sulfolobus solfataricus #:S.acidoc.1:rem: Prokaryota; Archaeobacteria; Sulfolobales. #:S.acidoc.1:rem:REFERENCE 1 (bases 1 to 3033) #:S.acidoc.1:rem: AUTHORS Woese,C.R. #:S.acidoc.1:rem: JOURNAL Unpublished (1991) #:S.acidoc.1:rem: STANDARD full staff_entry #:S.acidoc.1:rem:FEATURES Location/Qualifiers #:S.acidoc.1:rem: rRNA <1..>3033 #:S.acidoc.1:rem: /product="large subunit ribosomal RNA" #:S.acidoc.1:rem:BASE COUNT 699 a 803 c 1029 g 502 t #:S.acidoc.2:name:Sulfolobus acidocaldarius #:S.acidoc.2:subsp: #:S.acidoc.2:strain: #:S.acidoc.2:atcc: #:S.acidoc.2:acs:U05018 #:S.acidoc.2:auth:Durovic,P.V. and Dennis,P.P. #:S.acidoc.2:title: #:S.acidoc.2:jour: #:S.acidoc.2:who: #:S.acidoc.2:date: #:S.acidoc.2:rem:LOCUS SAU05018 7151 bp DNA BCT 16-MAR-1994 #:S.acidoc.2:rem:DEFINITION Sulfolobus acidocaldarius 16S and 23S rRNA genes, complete #:S.acidoc.2:rem: sequence. #:S.acidoc.2:rem:ACCESSION U05018 #:S.acidoc.2:rem:KEYWORDS . #:S.acidoc.2:rem:SOURCE Sulfolobus acidocaldarius #:S.acidoc.2:rem: ORGANISM Sulfolobus acidocaldarius #:S.acidoc.2:rem: Archaea; Crenarchaeota; Sulfolobales; Sulfolobus. #:S.acidoc.2:rem:REFERENCE 1 (bases 1 to 7151) #:S.acidoc.2:rem: AUTHORS Durovic,P.V. and Dennis,P.P. #:S.acidoc.2:rem: TITLE Separate pathways for excision and processing of 16S and 23S rRNA #:S.acidoc.2:rem: from the primary rRNA operon transcript from the hyperthermophilic #:S.acidoc.2:rem: archaebacterium Sulfolobus acidocaldarius: similarities to #:S.acidoc.2:rem: eukaryotic rRNA processing #:S.acidoc.2:rem: JOURNAL Unpublished #:S.acidoc.2:rem: STANDARD full automatic #:S.acidoc.2:rem:REFERENCE 2 (bases 1 to 7151) #:S.acidoc.2:rem: AUTHORS Durovic,P.V. #:S.acidoc.2:rem: TITLE Direct Submission #:S.acidoc.2:rem: JOURNAL Submitted (12-JAN-1994) Peter V. Durovic, Biochemistry and #:S.acidoc.2:rem: Molecular Biology, University of British Columbia, Faculty of #:S.acidoc.2:rem: Medicine, 2146 Health Sciences Mall, Vancouver, British Columbia #:S.acidoc.2:rem: V6T 1Z3, Canada #:S.acidoc.2:rem: STANDARD full automatic #:S.acidoc.2:rem:COMMENT #:S.acidoc.2:rem: NCBI gi: 460149 #:S.acidoc.2:rem:FEATURES Location/Qualifiers #:S.acidoc.2:rem: rRNA 850..2403 #:S.acidoc.2:rem: /product="16S ribosomal RNA" #:S.acidoc.2:rem: /note="The 16S rRNA in this organism is highly unusual in #:S.acidoc.2:rem: that it retains an extra 61 nucleotides at its 3' end of #:S.acidoc.2:rem: intergenic spacer sequence that in all other characterized #:S.acidoc.2:rem: organisms is removed by processing and assembly into small #:S.acidoc.2:rem: ribosome subunits" #:S.acidoc.2:rem: rRNA 2539..5580 #:S.acidoc.2:rem: /product="23S ribosomal RNA" #:S.acidoc.2:rem: /note="The predominant 5' end is at nucleotide 2539, #:S.acidoc.2:rem: shorter forms isolated starting between 2539 and 2550" #:S.acidoc.2:rem: source 1..7151 #:S.acidoc.2:rem: /organism="Sulfolobus acidocaldarius" #:S.acidoc.2:rem:BASE COUNT 1872 a 1593 c 2152 g 1534 t #:S.acidoc.2:rem:ORIGIN #:S.acidoc.3:name:Sulfolobus acidocaldarius #:S.acidoc.3:subsp: #:S.acidoc.3:strain: #:S.acidoc.3:atcc: #:S.acidoc.3:acs:U32320 #:S.acidoc.3:auth:Trevisanato,S.I., Segerer,A.H., Stetter,K.O. and Garrett,R.A. #:S.acidoc.3:title: #:S.acidoc.3:jour: #:S.acidoc.3:who: #:S.acidoc.3:date: #:S.acidoc.3:rem:LOCUS SAU32320 3238 bp DNA BCT 15-AUG-1995 #:S.acidoc.3:rem:DEFINITION Sulfolobus acidocaldarius 23S rRNA gene, partial sequence. #:S.acidoc.3:rem:ACCESSION U32320 #:S.acidoc.3:rem:KEYWORDS . #:S.acidoc.3:rem:SOURCE Sulfolobus acidocaldarius. #:S.acidoc.3:rem: ORGANISM Sulfolobus acidocaldarius #:S.acidoc.3:rem: Archaea; Crenarchaeota; Sulfolobales; Sulfolobus. #:S.acidoc.3:rem:REFERENCE 1 (bases 1 to 3238) #:S.acidoc.3:rem: AUTHORS Trevisanato,S.I., Segerer,A.H., Stetter,K.O. and Garrett,R.A. #:S.acidoc.3:rem: TITLE Phylogenetic analysis of the Archaeal order of Sulfolobales based #:S.acidoc.3:rem: on sequences of 23S rRNA genes and 16S/23S rRNA spacers #:S.acidoc.3:rem: JOURNAL Unpublished (1995) #:S.acidoc.3:rem:REFERENCE 2 (bases 1 to 3238) #:S.acidoc.3:rem: AUTHORS Trevisanato,S.I. #:S.acidoc.3:rem: TITLE Direct Submission #:S.acidoc.3:rem: JOURNAL Submitted (25-JUL-1995) Siro I. Trevisanato, Princess Margaret #:S.acidoc.3:rem: Hospital, Ontario Cancer Institute, 500 Sherbourne Street, Toronto, #:S.acidoc.3:rem: Ontario M4X 1K9, Canada #:S.acidoc.3:rem:COMMENT #:S.acidoc.3:rem: NCBI gi: 942629 #:S.acidoc.3:rem:FEATURES Location/Qualifiers #:S.acidoc.3:rem: source 1..3238 #:S.acidoc.3:rem: /organism="Sulfolobus acidocaldarius" #:S.acidoc.3:rem: /isolate="DSM 639" #:S.acidoc.3:rem: misc_feature <1..203 #:S.acidoc.3:rem: /note="16S/23S rRNA spacer region" #:S.acidoc.3:rem: rRNA 204..>3238 #:S.acidoc.3:rem: /product="23S rRNA" #:S.acidoc.3:rem:BASE COUNT 750 a 849 c 1080 g 559 t #:S.acidoc.3:rem:ORIGIN #:S.azoricus:name:Stygiolobus azoricus #:S.azoricus:subsp: #:S.azoricus:strain: #:S.azoricus:atcc: #:S.azoricus:acs:U32319 #:S.azoricus:auth:Trevisanato,S.I., Segerer,A.H., Stetter,K.O. and Garrett,R.A. #:S.azoricus:title: #:S.azoricus:jour: #:S.azoricus:who: #:S.azoricus:date: #:S.azoricus:rem:LOCUS SAU32319 3113 bp DNA BCT 15-AUG-1995 #:S.azoricus:rem:DEFINITION Stygiolobus azoricus 23S rRNA gene, partial sequence. #:S.azoricus:rem:ACCESSION U32319 #:S.azoricus:rem:KEYWORDS . #:S.azoricus:rem:SOURCE Stygiolobus azoricus. #:S.azoricus:rem: ORGANISM Stygiolobus azoricus #:S.azoricus:rem: Archaea; Crenarchaeota; Sulfolobales; Stygiolobus. #:S.azoricus:rem:REFERENCE 1 (bases 1 to 3113) #:S.azoricus:rem: AUTHORS Trevisanato,S.I., Segerer,A.H., Stetter,K.O. and Garrett,R.A. #:S.azoricus:rem: TITLE Phylogenetic analysis of the Archaeal order of Sulfolobales based #:S.azoricus:rem: on sequences of 23S rRNA genes and 16S/23S rRNA spacers #:S.azoricus:rem: JOURNAL Unpublished (1995) #:S.azoricus:rem:REFERENCE 2 (bases 1 to 3113) #:S.azoricus:rem: AUTHORS Trevisanato,S.I. #:S.azoricus:rem: TITLE Direct Submission #:S.azoricus:rem: JOURNAL Submitted (25-JUL-1995) Siro I. Trevisanato, Princess Margaret #:S.azoricus:rem: Hospital, Ontario Cancer Institute, 500 Sherbourne Street, Toronto, #:S.azoricus:rem: Ontario M4X 1K9, Canada #:S.azoricus:rem:COMMENT #:S.azoricus:rem: NCBI gi: 942628 #:S.azoricus:rem:FEATURES Location/Qualifiers #:S.azoricus:rem: source 1..3113 #:S.azoricus:rem: /organism="Stygiolobus azoricus" #:S.azoricus:rem: /strain="FC6" #:S.azoricus:rem: /isolate="DSM 6296" #:S.azoricus:rem: misc_feature <1..204 #:S.azoricus:rem: /note="16S/23S rRNA spacer region" #:S.azoricus:rem: rRNA 205..>3113 #:S.azoricus:rem: /product="23S rRNA" #:S.azoricus:rem:BASE COUNT 700 a 862 c 1078 g 472 t 1 others #:S.azoricus:rem:ORIGIN #:A.infernus:name:Acidianus infernus #:A.infernus:subsp: #:A.infernus:strain: #:A.infernus:atcc: #:A.infernus:acs:U32318 #:A.infernus:auth:Trevisanato,S.I., Segerer,A.H., Stetter,K.O. and Garrett,R.A #:A.infernus:title: #:A.infernus:jour: #:A.infernus:who: #:A.infernus:date: #:A.infernus:rem:LOCUS AIU32318 3140 bp DNA BCT 15-AUG-1995 #:A.infernus:rem:DEFINITION Acidianus infernus 23S rRNA gene, partial sequence. #:A.infernus:rem:ACCESSION U32318 #:A.infernus:rem:KEYWORDS . #:A.infernus:rem:SOURCE Acidianus infernus. #:A.infernus:rem: ORGANISM Acidianus infernus #:A.infernus:rem: Archaea; Crenarchaeota; Sulfolobales; Acidianus. #:A.infernus:rem:REFERENCE 1 (bases 1 to 3140) #:A.infernus:rem: AUTHORS Trevisanato,S.I., Segerer,A.H., Stetter,K.O. and Garrett,R.A. #:A.infernus:rem: TITLE Phylogenetic analysis of the Archaeal order of Sulfolobales based #:A.infernus:rem: on sequences of 23S rRNA genes and 16S/23S rRNA spacers #:A.infernus:rem: JOURNAL Unpublished (1995) #:A.infernus:rem:REFERENCE 2 (bases 1 to 3140) #:A.infernus:rem: AUTHORS Trevisanato,S.I. #:A.infernus:rem: TITLE Direct Submission #:A.infernus:rem: JOURNAL Submitted (25-JUL-1995) Siro I. Trevisanato, Princess Margaret #:A.infernus:rem: Hospital, Ontario Cancer Institute, 500 Sherbourne Street, Toronto, #:A.infernus:rem: Ontario M4X 1K9, Canada #:A.infernus:rem:COMMENT #:A.infernus:rem: NCBI gi: 942627 #:A.infernus:rem:FEATURES Location/Qualifiers #:A.infernus:rem: source 1..3140 #:A.infernus:rem: /organism="Acidianus infernus" #:A.infernus:rem: /isolate="So4a" #:A.infernus:rem: misc_feature <1..185 #:A.infernus:rem: /note="16S/23S rRNA spacer region" #:A.infernus:rem: rRNA 186..>3140 #:A.infernus:rem: /product="23S rRNA" #:A.infernus:rem:BASE COUNT 687 a 876 c 1101 g 475 t 1 others #:A.infernus:rem:ORIGIN #:A.brierley:name:Acidianus brierleyi #:A.brierley:subsp: #:A.brierley:strain: #:A.brierley:atcc: #:A.brierley:acs:U32317 #:A.brierley:auth:Trevisanato,S.I., Segerer,A.H., Stetter,K.O. and Garrett,R.A. #:A.brierley:title: #:A.brierley:jour: #:A.brierley:who: #:A.brierley:date: #:A.brierley:rem:LOCUS ABU32317 3246 bp DNA BCT 15-AUG-1995 #:A.brierley:rem:DEFINITION Acidianus brierleyi 23S rRNA gene, partial sequence. #:A.brierley:rem:ACCESSION U32317 #:A.brierley:rem:KEYWORDS . #:A.brierley:rem:SOURCE Acidianus brierleyi. #:A.brierley:rem: ORGANISM Acidianus brierleyi #:A.brierley:rem: Archaea; Crenarchaeota; Sulfolobales; Acidianus. #:A.brierley:rem:REFERENCE 1 (bases 1 to 3246) #:A.brierley:rem: AUTHORS Trevisanato,S.I., Segerer,A.H., Stetter,K.O. and Garrett,R.A. #:A.brierley:rem: TITLE Phylogenetic analysis of the Archaeal order of Sulfolobales based #:A.brierley:rem: on sequences of 23S rRNA genes and 16S/23S rRNA spacers #:A.brierley:rem: JOURNAL Unpublished (1995) #:A.brierley:rem:REFERENCE 2 (bases 1 to 3246) #:A.brierley:rem: AUTHORS Trevisanato,S.I. #:A.brierley:rem: TITLE Direct Submission #:A.brierley:rem: JOURNAL Submitted (25-JUL-1995) Siro I. Trevisanato, Princess Margaret #:A.brierley:rem: Hospital, Ontario Cancer Institute, 500 Sherbourne Street, Toronto, #:A.brierley:rem: Ontario M4X 1K9, Canada #:A.brierley:rem:COMMENT #:A.brierley:rem: NCBI gi: 942626 #:A.brierley:rem:FEATURES Location/Qualifiers #:A.brierley:rem: source 1..3246 #:A.brierley:rem: /organism="Acidianus brierleyi" #:A.brierley:rem: misc_feature <1..200 #:A.brierley:rem: /note="16S/23S rRNA spacer region" #:A.brierley:rem: rRNA 201..>3246 #:A.brierley:rem: /product="23S rRNA" #:A.brierley:rem:BASE COUNT 778 a 823 c 1071 g 573 t 1 others #:A.brierley:rem:ORIGIN #:Tf.pendens:name:Thermofilum pendens #:Tf.pendens:subsp: #:Tf.pendens:strain: #:Tf.pendens:atcc: #:Tf.pendens:acs:X14835 #:Tf.pendens:auth:Kjems,J. #:Tf.pendens:title: #:Tf.pendens:jour:Tf.pendens:date:10.4.88 #:Tf.pendens:who: #:Tf.pendens:date:10.4.88 #:Tf.pendens:rem:LOCUS X14835 8935 bp UNA 15-SEP-1990 #:Tf.pendens:rem:DEFINITION Thermofilum pendens DNA for 16S and 23S ribosomal RNA, tRNA-Met, #:Tf.pendens:rem: and tRNA-Gly. #:Tf.pendens:rem:ACCESSION X14835 #:Tf.pendens:rem:KEYWORDS . #:Tf.pendens:rem:SOURCE #:Tf.pendens:rem: ORGANISM Unknown #:Tf.pendens:rem: Unclassified. #:Tf.pendens:rem:REFERENCE 1 (bases 1 to 8935) #:Tf.pendens:rem: AUTHORS Kjems,J. #:Tf.pendens:rem: JOURNAL Unpublished (1989) see COMMENT for author address #:Tf.pendens:rem: STANDARD unannotated staff_entry #:Tf.pendens:rem:REFERENCE 2 (bases 1 to 8935) #:Tf.pendens:rem: AUTHORS Kjems,J., Leffers,H., Olesen,T., Ingelore,H. and Garrett,R.A. #:Tf.pendens:rem: TITLE Sequence, organisation and transcription of the ribosomal RNA #:Tf.pendens:rem: operon and the downstream tRNA and protein genes in the #:Tf.pendens:rem: archaebacterium Thermofilum pendens #:Tf.pendens:rem: JOURNAL Unpublished (1990) see COMMENT for author address #:Tf.pendens:rem: STANDARD unannotated staff_entry #:Tf.pendens:rem:BASE COUNT 1894 a 2462 c 2941 g 1638 t #:C.symbio.A:title:Genomic analysis reveals chromosomal variation in natural #:C.symbio.A:auth:Schleper,C., DeLong,E.F., Preston,C.M., Feldman,R.A., Wu,K.Y. #:C.symbio.A:title:populations of the uncultured psychrophilic archaeon #:C.symbio.A:name:Cenarchaeum symbiosum strain A. #:C.symbio.A:subsp: #:C.symbio.A:strain:A hypothetical protein 01 gene, complete cds #:C.symbio.A:atcc: #:C.symbio.A:acs:AF083071 #:C.symbio.A:auth:and Swanson,R.V. #:C.symbio.A:title:Cenarchaeum symbiosum #:C.symbio.A:jour:J. Bacteriol. (1998) In press #:C.symbio.A:who: #:C.symbio.A:date:14-SEP-1998 #:C.symbio.A:rem:ref:1 (bases 1 to 32998) #:C.symbio.A:rem:ref:2 (bases 1 to 32998) #:C.symbio.A:rem:auth:Feldman,R.A. #:C.symbio.A:rem:jour:Submitted (07-AUG-1998) Genomics, Diversa Corp., 10665 #:C.symbio.A:rem:: Sorrento Valley Rd., San Diego, CA 92121, USA #:C.symbio.A:rem:title:Direct Submission #:C.symbio.A:rem:KEYWORDS:. #:C.symbio.A:rem:GenBank ACCESSION:AF0830 1 #:C.symbio.B:strain:genes, complete cds #:C.symbio.B:title:Cenarchaeum symbiosum #:C.symbio.B:strain:B histone H1 DNA binding protein (hc2), hypothetical protein, #:C.symbio.B:auth:and Swanson,R.V. #:C.symbio.B:title:Genomic analysis reveals chromosomal variation in natural #:C.symbio.B:name:Cenarchaeum symbiosum strain B. #:C.symbio.B:subsp: #:C.symbio.B:strain:lysyl tRNA synthetase (syk), and hypothetical protein 01 #:C.symbio.B:atcc: #:C.symbio.B:acs:AF083072 #:C.symbio.B:auth:Schleper,C., DeLong,E.F., Preston,C.M., Feldman,R.A., Wu,K.Y. #:C.symbio.B:title:populations of the uncultured psychrophilic archaeon #:C.symbio.B:jour:J. Bacteriol. (1998) In press #:C.symbio.B:who: #:C.symbio.B:date:14-SEP-1998 #:C.symbio.B:rem:ref:1 (bases 1 to 42432) #:C.symbio.B:rem:ref:2 (bases 1 to 42432) #:C.symbio.B:rem:auth:Feldman,R.A. #:C.symbio.B:rem:jour:Submitted (07-AUG-1998) Genomics, Diversa Corp., 10665 #:C.symbio.B:rem:: Sorrento Valley Rd., San Diego, CA 92121, USA #:C.symbio.B:rem:title:Direct Submission #:C.symbio.B:rem:KEYWORDS:. #:C.symbio.B:rem:GenBank ACCESSION:AF083072 E.coli 0 |--|---------GGUUAAGCGACUAAGCGUACACGGUGGAUG|CCCUGG E.coli 50 |CAGUCAG|AG|GCGAUGAAGGA|CGUG(CUAAUC)U|GCGAUAAGCGUC E.coli 100 GGU|AAGGU(GAUAUGA)ACCGUUAUAACCGGCGAUU|UC-CGAAUGGG( E.coli 150 GAAA-)CCC|AGUGUGU-------(UUCG-)-------ACAC-ACU-AUC E.coli 200 AUUAACU(GA-AUC-CA-UA)GGU-UAAUGAGGCGAAC|CGGGGGAACU| E.coli 250 GA(AACA)UCUAAGUACCCCGAGGAAAAGAAAUC(AA--CC)GAGA-U|U E.coli 300 CCCCCAGUAGC(GGCGA)GCGAACGGGGAGCAGCCCA------------- E.coli 350 -------------------------------------------gagccug E.coli 400 -----(-----)-----aaucagug--uguguguuagug-GAAg-cguc- E.coli 450 (uggaaa)-ggcgcgc|g(aua)caGGG(UGACAGC)CCCGUA-cacaaa E.coli 500 aaugcacaugcugu---gagcucGAU----GAGUAGGGCGGGA(CACGUG E.coli 550 GUA)UCCUGUCUGAAU-AUGGGGG(GACCAU--)CCUCCAAGGCUAAAUA E.coli 600 CUCCUGACUGACCGAUAGUGAAC-CAGUACC(GUGA)GGGAAAGGCGAAA E.coli 650 AGAACCCC(GGCGA)GGGGAGUGAAAAAGAACCUGAAACCGUGUACGUAC E.coli 700 A-AGCAGUGGGAGCACGC-------------------------------- E.coli 750 --(uuag-)-------------------------------GCGUGUGACU E.coli 800 GCGUACCU(UUUGUAU|A)AUGG|GUCAGCGACUUAUA-UUCUGUAGCAA E.coli 850 GGUUAACC--(--GAAUA)--GGGGAGCCGAAGG(GAAA)CCG------- E.coli 900 ---------------------------------AGUCU(UAACU)GGGCG E.coli 950 UuaaGUUGCAGGGUAUAGACCCGAAACCCGGUGAUCUAGCCAUGGG|CAG E.coli 1000 GUUGAAGGUUGGG(UAAC)ACUAACUGGAGGACCG-AA-CCGAC-UA-AU E.coli 1050 (GUUGAA-AA)AUUA-G|CGGAUGACUUGUGGCUGGGGGU(GAAAG)GCC E.coli 1100 AAUCAAACCGGG-AGAUAGCUGGUUCUCCCCGAAAGCUAU(UUAG)GUAG E.coli 1150 CGC|CUCGUGAAUU|CAU|---CUCCGG|GGGUAG|AGC-ACUGUUUCGG E.coli 1200 CAA--GG|GGGUC(AUCCC)GACUUACCAACCCG-AUGCAAACUGCGAAU E.coli 1250 A|CCGGAGAAUGU---UA|UCACGGG-AGACACACGGC-G-GGU(GCUAA E.coli 1300 C)GUCC-GUCGUGAAGAGGG(AAACAA)CCCAGACCGCCAGCUAAGGU|C E.coli 1350 CCAAAGUCAUGGUUA-AGUG--------GGAAACGAUGUGGGAAGGCCCA E.coli 1400 GACAGCCAGGAUGUUGGC(UUAGAAGCA)GCCAUCAU|U(UAA)A|GAAA E.coli 1450 GC(GUAAUA)GC|UCACUGGUCGAGUCGGCCUGC|GCGGAAGAUGUAACG E.coli 1500 GGGCU-AAACCAUG|C|ACCGAAGCU|GCGG|cagcgacgc-(uuau--) E.coli 1550 -gcguugu--ugGGUAGGGGAG|CGUUCUGUAAGCCUGCGAAGGUGUG-C E.coli 1600 U(GUGA)GGCAUGCUGG|AGGUAUCAGAAGUGCGAAUGCUGAC|AUAAGU E.coli 1650 AACG--AUAAAGCGGG(UGAAAA-G)CCC-GCU|CGCCGGAA-GACCAAG E.coli 1700 GGUUCCUGUCCAACG-(UUAAU)CG|GGGCAGGGUGAGU|CGA|CCCCUA E.coli 1750 AGGCGAG-GCC(-GAAA)GGC---GUAGUCGAU--GGGAAACAGG(UUAA E.coli 1800 UAUU)CCUGU|AC|uugguguu-acu----------------------gc E.coli 1850 gaag-gggggacggagaaggcuauguug|gccggg(----cga--cgguu E.coli 1900 g----u)cccggu|uuaagcgug--uaggcugguuuuccagg(caaau)c E.coli 1950 c|ggaaaaucaaggcuga--ggcgugauga|cga|ggcac(--uacg)gu E.coli 2000 gcugaagcaacaaaugcccug|cuucc-aggaaaagccucuaagcauca- E.coli 2050 ggu-aacauca--a|A|UCGUACCCCAAACC(GACACA)GG|UGGUCAGG E.coli 2100 UA(-GAGAA-)UACCAAGGCGC||U-UGAG-AG-AACUCGGGUGAAGGAA E.coli 2150 CUAGGCAAAAUGGUGCCGUAAC(UUCG)GGAGAAGGCAC|GCUGAUaugu E.coli 2200 aggugaggucc(--cucgc)ggauggagcugaaAUCAGU|C(GAA)GAUA E.coli 2250 CCAGCUGGCUG|CAACUGU(UUAUUAAAA)ACACAGCACUGUG|CAAACA E.coli 2300 C(GAA-A)GUGGACGUAUACGGUGUGACGCCUGCCCGGU|GCCGGAAGGU E.coli 2350 UAAUUGAUGGGGUUAGC(GCAA)GCGAAGCUCUUGAUCGAAGCC|CCGGU E.coli 2400 AAAC|GGC|GGCCGU(AACUAUA)ACGGUC|C(UAA)GGUAGCGAAAUUC E.coli 2450 CUU|GUCGGG(UA-----AGU)UCCGAC|CUGCACGAAUGGCGUAAUGAU E.coli 2500 GGCCAGGCUGUCUCCACCCGAG-ACUCA|GUGAAAUU|-GAACU-CGCUG E.coli 2550 (-UGAAGA-UG)CAGUGUACCCGCGGCAAGACGGAAAGACCCCGUGA|AC E.coli 2600 CUUUACUAU|AGCUUGACACU|GAACAUUGAGCCUUGAUGUGUAGGAUAG E.coli 2650 GUGGGAGGCUUUG---AAGUGUGGAC(GCCA-)GUCUGCAU-GGAGCCGA E.coli 2700 CCUUGAAAUACCACC|CUUUAAUGUUUGAUGUUCUAACGUUGACCCG(UA E.coli 2750 AUC-)CGGGUUGCGGACAGUGUCUGGUGGGUAGUUUGACUG(GGG)CGGU E.coli 2800 -C|UCCUCC(UAAAGAGUAAC)GGAGGA|G|C|ACGAAGGUUGGC|UAAU E.coli 2850 CCUGG(UCGGACA)UCAGGAGGUUA|GU(G|C-AAUG)GCAUAAGCCAGC E.coli 2900 UUGACUGCGAGCG(---UGACGG-)CGCGAGCAGGUGC(GAAA)GCAGGU E.coli 2950 |CAUAGUGAUCCGGUG-GUUCUG(---AAUGGA)AGG|GCCAUCGCUCAA E.coli 3000 C|GGAUAAAAGGUACUC|CGGG|GAUAACAG|GCUGAUACCGCCCAAGA( E.coli 3050 GUUCAUA)UCGACGGCGGUGUUUGGCACCUCGAUGUC|GGCU|C|AUCAC E.coli 3100 |AUCC|UGGGGCU(GAAGUA)GGUCCCAAGGGU|AUGGC(UGUUC)GCCA E.coli 3150 UUUAAAGUGGUACGCGAGCUGGGUUUAGAAC|GUC(GUGA)GACAGUUCG E.coli 3200 GUCCCUAUCU|GCCGUGGG-|CG-CUGGAGAACU|GA|GGGGG--GCUGC E.coli 3250 UCC(UAGUAC(GAGA)GGACC)GGAGUGG|ACGCAUCACUGGUGUUCGGG E.coli 3300 U|UGUCAU(GCCA)AUGGCA-CUGCCCGGUA-GCUAAAUGCGGAAGAGAU E.coli 3350 AAGUGCU(GAAAGCAUCUA)AGCACGAAACUUGCCCC|GAG-AUGAGUUC E.coli 3400 UCC|CU|GACCCU--------------(UUA--)--------------AG E.coli 3450 GGUCCUGAAGG|AA|CGUUG(AAGACGA)CGACGUUGAUAG|GCCGG|GU E.coli 3500 GUGUAAGCGCA-------(GCGA--)-------UGCGU|UGAGCUA|A|C E.coli 3550 CGGUACUAAUGAACCGUGAG|GCUUAACCUU------||||| EURYARCHAE 0 x~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ EURYARCHAE 150 ~~~~-~~~~~~~~~~~~~------~~~~~-~~------~~~~-~~~~~~~ EURYARCHAE 200 ~~~~~~~~~~~~~~-~~~~|~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~|~~~~~~~~--~~~~~~~-~~~ EURYARCHAE 300 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~|~(~~~-)~|~ EURYARCHAE 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|~~~~~~~~~~~~~ EURYARCHAE 400 -----(-----)-----~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~- EURYARCHAE 450 ~~~~~~~~-~~|~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~ EURYARCHAE 500 ~~~~~~~~~~~~~~---~~~~~~~~~----~|~~~~~~~~~~~~~~~~~~ EURYARCHAE 550 ~~~~~~~~~~~~~~~|-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ EURYARCHAE 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ EURYARCHAE 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|~~ EURYARCHAE 700 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ EURYARCHAE 750 --~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~ EURYARCHAE 800 ~~~~~~~~(~~~~~~~|~)~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ EURYARCHAE 850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|~--- EURYARCHAE 900 ---------------------------------~~~~~~~~~~~~~~~~~ EURYARCHAE 950 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 1000 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~-~~-~~ EURYARCHAE 1050 ~~~~~~~-|~(~~~~-)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 1100 ~~~~|~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~| EURYARCHAE 1150 ~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 1200 |~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ EURYARCHAE 1250 ~~~~~~~~~~~~~~~~~~~~~~|~~~-~~~~~~~~~~~~~-~~~~~~~~~ EURYARCHAE 1300 ~~~~-~-~~~~|~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 1350 ~~~~~~~~~~~~~~~-~~~~~|~|~|--~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 1400 ~~~~~~~~~~~~~~~|~~(~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 1450 ~~~~~~~~~~~~~~~~~~~~~~~)~~~~~~~~~~~~~~~~~~~~~~~(~~ EURYARCHAE 1500 ~~~~~~~|~~~~~~~~~~~~~~~~~~~~~~~~~~|~~~~|~~~~~~|~~~ EURYARCHAE 1550 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 1600 ~~~~~~~~~~~~~~|~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 1650 -~~~--~~|~|~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~ EURYARCHAE 1700 ~|||||~~~~~~~~~~(~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 1750 ~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~ EURYARCHAE 1800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 1850 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~ EURYARCHAE 1900 ~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 1950 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ EURYARCHAE 2000 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 2050 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 2100 ~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~-~~-~~~~~~~~~~~~~~~~ EURYARCHAE 2150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 2200 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 2250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 2300 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 2350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 2400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 2450 ~~~~~~~~~~~~~-----~~~~~~~~~~|~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 2500 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~-~~~~~ EURYARCHAE 2550 ~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 2600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 2650 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~ EURYARCHAE 2700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 2750 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 2800 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 2850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ EURYARCHAE 2900 ~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 2950 ~~~~~~~~~~~~~~~~-~~~~~~(---~~~~~~)~~~~~~~~~~~~~~~~ EURYARCHAE 3000 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 3050 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 3100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 3150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 3200 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ EURYARCHAE 3250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 3300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ EURYARCHAE 3350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ EURYARCHAE 3400 ~~~~~~~~~~~~~--------------~~~~~~~--------------~~ EURYARCHAE 3450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ EURYARCHAE 3500 ~~~~~~~~~~~~~-----~~~~~~-~~~~~---~~~~~~~~~~~~~|~~~ EURYARCHAE 3550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|||| M.jannas.A 0 |---ggauacucugccgggcc--ACCAGCCCACCUGGUGGAUG|GCUCGG M.jannas.A 50 |CUCGGGG|CG|CCGAGGAAGGG|CGUG(GCAAGC)U|GCGAUAAGCCCG M.jannas.A 100 GGG|GAGGC(GCAGGCA)GCCGUG-GAACCCGGGAUC|CC-CGAAUGGG( M.jannas.A 150 ACUU-)CCU|gcccc---------(auuu-)---------gg-ggc-gcu M.jannas.A 200 ccc----(---guu--a---)-----gggagcggGAAC|GCGGGGAAAA| M.jannas.A 250 GA(AGCA)UCCGAGUACCCGCAGGAAAAGAAACC(aa--ca)GGGA-U|G M.jannas.A 300 CCGGGAGUAGG(GGCGA)CCGAAACCGGCACAGGGCAaaccgaa--uccc M.jannas.A 350 uaccc(-guaa)ggguaggga--gauguggaguugc-aggg-cccccaau M.jannas.A 400 -----(-----)------acagacccccacugggaagcc-GAAgucccc- M.jannas.A 450 (uggaau)-ggggcgc|c(aua)gaGGG(UGAAAGC)CCCGUA-ggcgua M.jannas.A 500 accaguugggggucu---uggggugucccuGAGUACCGCGCGu(---ugg M.jannas.A 550 aua)uCGCGCGGGAAG-CUGGGAG(acauuagg)CUUCCAACCCUaaAua M.jannas.A 600 CG-UCCCGAGACCGAUAGCGAAC-UAGUACC(GUGA)GGGAAAGCUGAAA M.jannas.A 650 AGCACCCC(U-UGC)GGGGGGUG-AAAAGAGCCUGAAACCAGGUGGGUac M.jannas.A 700 g-gaauggcacggccc--gaaagg-----uaaccaccccgaaggaaacuc M.jannas.A 750 cc(gcga-)gggag---gaguacgag-ggguggcaugccg--gggucgug M.jannas.A 800 ccGUCCGU(UUCGAAA|A)ACGG|GCCGGGGAGUGUAC-GGGUGUGGCGA M.jannas.A 850 GCCUAAgggg(--uucaa)ccccGGAGGCGUaGG(GAAA)CCgacaugcc M.jannas.A 900 cgcaGccc---(uuau)---gggugaggggcggGGUCU(uaau-)GGGCC M.jannas.A 950 CGGAGUCACACCCGUACGACCCGAAACCGGGCGAUCUAGGCCGGGG|UAG M.jannas.A 1000 GGUGAAGCCCCUC(GCCA)GAGGGGUGGAGGCCCg-ca-ggg-g-ug-uu M.jannas.A 1050 (accgcgcaa)agugcu|ccucuGACCCCGGUCUAGGGGU(GAAAA)GCC M.jannas.A 1100 AAUCGAGCCCGG-AGAUAGCUGGUUCCCCCCGAAAUAACU(CGCA)GGUU M.jannas.A 1150 AGC|CGGGGGUUA-|GGU|-aGAUGGCG|GGGUAG|AGCCACGGAUAGGG M.jannas.A 1200 UGuuuaG|GGGGC(gaga-)GCC-U-Cg-gCACCCUGUCAAACUCCGAAC M.jannas.A 1250 C|CGUCAUCGCCgu---a|gCCCCCG-AGUGAGGGCAU-A-CGG(G-UAA M.jannas.A 1300 G)CCGU-AUGUCCGAGAGGG(GAACAA)CCCGGACCCG-GGUUAAGGC|C M.jannas.A 1350 CCUAAGUGCCGGCUA-AGUGuaaa---ugagaaGGGAGUCCCUGGCCUAA M.jannas.A 1400 GACAGCGGGgAGGUUGGC(UUAGAAGCA)GCCAUCCU|U(UAA)A|GAGU M.jannas.A 1450 GC(GUAACA)GC|UCACCCGUCGAGGUCAGGGGC|CCCGAAGAUAAC-GG M.jannas.A 1500 GGGCU-AAGCCGGC|C|GCCGAGACC|CGGG|ggggcu----(gaaa--) M.jannas.A 1550 ----agccauccGGUAGGGGGG|CGUCCCGCG-GGGGUAGAAGCUCGG-C M.jannas.A 1600 C(GUGA)GGUCGGGUGG|ACCCCGUGGGAACGAGAAUCCCGGC|AGUAGU M.jannas.A 1650 AACagca-aaGUGGGG(UGAGAA-U)CCC-CAC|CGCCGAAG-GGGCCAG M.jannas.A 1700 GUUUCCACAGCAACG-(GUCGU)CA|GCUGUGGGUUAGC|CGG|-UCCUA M.jannas.A 1750 ACCCCCG-GGG(UAAUU)CCC--ugGGGGGGAAA-GGGAAGCGGG(UUAA M.jannas.A 1800 UAUU)CCCGC|GC-caccgggg-uacg---ugcg(-gcaa)cgcaa-ggc M.jannas.A 1850 cagc-uccugacgcuucgggguaggccg|accacc(-----cc-cgucgg M.jannas.A 1900 ------)gguggc|-caagcgca-uaagccCGGGGAGUG-CC(GUAAU)G M.jannas.A 1950 G|CGAGAACCG--ggcaa-aagcgugaug-|ggc|ccucc(--guua)gg M.jannas.A 2000 aggguu-cggcugagcccug-|gagcccgugaaaagggagcuggcaa--- M.jannas.A 2050 ggauccccggu--g|A|CCGUACCCAGAACC(GACACA)GG|UGCCCCUA M.jannas.A 2100 GG(cgaguau)CCUAA-GGCGU||GUCGGG-AG-AAUCCGGCCCAGGGAA M.jannas.A 2150 GUCGGCAAAUUGGCCCCGUAAC(UUCG)GGAGAAGGGGU|GCCUGC---g M.jannas.A 2200 gucuucuc---(--uaagu)--gaggggacc--GCAG-U|C(GCA)GUGG M.jannas.A 2250 CCAGGGGGGUC|CGACUGU(UUAAUAAAA)ACACAGGUCUUGG|CUAGCC M.jannas.A 2300 C(GUA-A)GGGUGUGUACCAAGGCCGACGCCUGCCCAGU|GCCGGUACGU M.jannas.A 2350 GAA----acccggg---(uaca)----accggg----cGAAGCG|CCGGU M.jannas.A 2400 AAAC|GGC|GGGGGU(AACUAUA)ACCCUC|U(UAA)GGUAGCGAAAUUC M.jannas.A 2450 CUU|GUCGGG(UA-----AGU)UCCGAC|CUGCAUGAAUGGCGUAACGAG M.jannas.A 2500 ACCCCCACUGUCCCGGGCCGGA-ACCCG|GUGAACCU|-ACCAU-UCCGG M.jannas.A 2550 (-UGCAAA-GG)CCGGAGACCCCCAGUGGGAAGCGAAGACCCCGUGG|AG M.jannas.A 2600 CUUUACUGC|AGCCUGUCGUU|GGGGCAUGGCCGUGGGUGCACAGCGUAG M.jannas.A 2650 GUGGGAGCCGUCG---AAGCCACCCC(UCCG-)GGGGUGGU-GGAGGCGC M.jannas.A 2700 CCAUGGGACACCACC|CACCCAUGGCCAUGUCCCuaac------ccc(gu M.jannas.A 2750 aaa-)ggg-----ggacACCGGCAGGUGGGCAGUUUGGCUG(GGG)CGGC M.jannas.A 2800 AC|CCCCCU(GAAAAGGCAUC)AGGGGG|G|C|CCAAAGGUCGGC|UCAG M.jannas.A 2850 GCGGG(UCAGAAC)UCCGCCGUGGA|GU(G|C-AAGG)GCAAAAGCCGGC M.jannas.A 2900 CUGACUUGGUCGG(uaaaagagg-)CCGACCAAGAGGC(GAAA)GCCGGG M.jannas.A 2950 |CCUAGCGAACCCCUGUGC-CUC(--accgaug)GGG|GCCAGGG-auaa M.jannas.A 3000 c|aga--aAAGCUACCC|CGGG|GAUAACAG|AGUUGUCGCGGGCAAGA( M.jannas.A 3050 GCCCAUA)UCGACCCCGCGGCUUGCUACAUCGAUGUC|GGUU|C|UUCCC M.jannas.A 3100 |AUCC|UGGGCCU(GCAGCA)GGGCCCAAGGGU|GGGGC(UGUUC)GCCC M.jannas.A 3150 AUUAAAGGGGAUCGUGAGCUGGGUUUAAACC|GUC(GUGA)GACAGGUUG M.jannas.A 3200 GUUGCUAUCU|GCUGGGGG-|UG-UUGGCCGCCU|GA|GGGGAA-GGUGG M.jannas.A 3250 CUC(UAGUAC(GAGA)GGAAC)GAGCCGC|CGGCGCCUCUGGUCUACCGG M.jannas.A 3300 U|UGUCC-(GACA)-GGGCA-uuGCCGGGCA-GCUACGCGCUA-AGGGAU M.jannas.A 3350 AAGGGCU(GAAGGCAUCUA)AGCCCGAAACCCUCCCC|GAA-AAUAGGCG M.jannas.A 3400 GCC|ag|ucc-----------------(uucg-)---------------- M.jannas.A 3450 ggga--cgagg|gc|UCUCC(UAUAAGA)GGAGGUUGAUAG|GCCGG|GG M.jannas.A 3500 GUGUAAGCGCCgagggc-(uuu---)-gcccgaGGCGU|UCAGCCC|G|C M.jannas.A 3550 CGGUACUAaucgccca--ag|ggcccggcagggu---||||| M.jannas.B 0 |---ggauacucugccgggcc--ACCAGCCCACCUGGUGGAUG|GCUCGG M.jannas.B 50 |CUCGGGG|CG|CCGAGGAAGGG|CGUG(GCAAGC)U|GCGAUAAGCCCG M.jannas.B 100 GGG|GAGGC(GCAGGCA)GCCGUG-GAACCCGGGAUC|CC-CGAAUGGG( M.jannas.B 150 ACUU-)CCU|gcccc---------(auuu-)---------gg-ggc-gcu M.jannas.B 200 ccc----(---guu--a---)-----gggagcggGAAC|GCGGGGAAAA| M.jannas.B 250 GA(AGCA)UCCGAGUACCCGCAGGAAAAGAAACC(aa--ca)GGGA-U|G M.jannas.B 300 CCGGGAGUAGG(GGCGA)CCGAAACCGGCACAGGGCAaaccgaa--uccc M.jannas.B 350 uaucc(-guaa)ggguaggga--gauguggaguugc-aggg-cccccaau M.jannas.B 400 -----(-----)------auagacccccacugggaagcc-GAAgucccc- M.jannas.B 450 (uggaau)-ggggcgc|c(aua)gaGGG(UGAAAGC)CCCGUA-ggcgua M.jannas.B 500 accaguugggggucu----ggggugucccuGAGUACCGCGCGu(---ugg M.jannas.B 550 aua)uCGCGCGGGAAG-CUGGGAG(acauuagg)CUUCCAACCCUaaAua M.jannas.B 600 CG-UCCCGAGACCGAUAGCGAAC-UAGUACC(GUGA)GGGAAAGCUGAAA M.jannas.B 650 AGCACCCC(U-UGC)GGGGGGUG-AAAAGAGCCUGAAACCAGGUGGGUac M.jannas.B 700 g-gaauggcacggccc--gaaagg-----uaaccaccccgaaggaaacuc M.jannas.B 750 cc(gcga-)gggag---gaguacgag-ggguggcaugccg--gggucgug M.jannas.B 800 ccGUCCGU(UUCGAAA|A)ACGG|GCCGGGGAGUGUAC-GGGUGUGGCGA M.jannas.B 850 GCCUAAgggg(--uucaa)ccccGGAGGCGUaGG(GAAA)CCgacaugcc M.jannas.B 900 cgcaaccc---(uuau)---gggugaggggcggGGUCU(uaau-)GGGCC M.jannas.B 950 CGGAGUCACACCCGUACGACCCGAAACCGGGCGAUCUAGGCCGGGG|UAG M.jannas.B 1000 GGUGAAGCCCCUC(GCCA)GAGGGGUGGAGGCCCg-ca-ggg-g-ug-uu M.jannas.B 1050 (accgcgcaa)agugcu|ccucuGACCCCGGUCUAGGGGU(GAAAA)GCC M.jannas.B 1100 AAUCGAGCCCGG-AGAUAGCUGGUUCCCCCCGAAAUAACU(CGCA)GGUU M.jannas.B 1150 AGC|CGGGGGUUA-|GGU|-aGAUGGCG|GGGUAG|AGCCACGGAUAGGG M.jannas.B 1200 UGuuuaG|GGGGC(gaga-)GCCCU-Cg-gCACCCUGUCAAACUCCGAAC M.jannas.B 1250 C|CGUCAUCGCCgu---a|gCCCCCG-AGUGAGGGCAU-A-CGG(G-UAA M.jannas.B 1300 G)CCGU-AUGUCCGAGAGGG(GAACAA)CCCGGACCCG-GGUUAAGGC|C M.jannas.B 1350 CCUAAGUGCCGGCUA-AGUGuaaa---ugagaaGGGAGUCCCUGGCCUAA M.jannas.B 1400 GACAGCGGGgAGGUUGGC(UUAGAAGCA)GCCAUCCU|U(UAA)A|GAGU M.jannas.B 1450 GC(GUAACA)GC|UCACCCGUCGAGGUCAGGGGC|CCCGAAGAUAAC-GG M.jannas.B 1500 GGGCU-AAGCCGGC|C|GCCGAGACC|CGGG|ggggcu----(gaaa--) M.jannas.B 1550 ----agccauccGGUAGGGGGG|CGUCCCGCG-GGGGUAGAAGCUCGG-C M.jannas.B 1600 C(GUGA)GGUCGGGUGG|ACCCCGUGGGAACGAGAAUCCCGGC|AGUAGU M.jannas.B 1650 AACagca-aaGUGGGG(UGAGAA-U)CCC-CAC|CGCCGAAG-GGGCCAG M.jannas.B 1700 GUUUCCACAGCAACG-(GUCGU)CA|GCUGUGGGUUAGC|CGG|-UCCUA M.jannas.B 1750 ACCCCCG-GGG(UAAUU)CCC--ugGGGGGGAAA-GGGAAGCGGG(UUAA M.jannas.B 1800 UAUU)CCCGC|GC-caccgggg-uacg---ugcg(-gcaa)cgcaa-ggc M.jannas.B 1850 cagc-uccugacgcuucgggguaggccg|accacc(-----cc-cgucgg M.jannas.B 1900 ------)gguggc|-caagcgca-uaagccCGGGGAGUG-CC(GUAAU)G M.jannas.B 1950 G|CGAGAACCG--ggcaa-aagcgugaug-|ggc|ccucc(--guua)gg M.jannas.B 2000 aggguu-cggcugagcccug-|gagcccgugaaaagggagcuggcaa--- M.jannas.B 2050 ggauccccggu--g|A|CCGUACCCAGAACC(GACACA)GG|UGCCCCUA M.jannas.B 2100 GG(cgaguau)CCUAA-GGCGU||GUCGGG-AG-AAUCCGGCCCAGGGAA M.jannas.B 2150 GUCGGCAAAUUGGCCCCGUAAC(UUCG)GGAGAAGGGGU|GCCUGC---g M.jannas.B 2200 gucuucuc---(--uaagu)--gaggggacc--GCAGGU|C(GCA)GUGG M.jannas.B 2250 CCAGGGGGGUC|CGACUGU(UUAAUAAAA)ACACAGGUCUUGG|CUAGCC M.jannas.B 2300 C(GUA-A)GGGUGUGUACCAAGGCCGACGCCUGCCCAGU|GCCGGUACGU M.jannas.B 2350 GAA----acccggg---(uaca)----accggg----cGAAGCG|CCGGU M.jannas.B 2400 AAAC|GGC|GGGGGU(AACUAUA)ACCCUC|U(UAA)GGUAGCGAAAUUC M.jannas.B 2450 CUU|GUCGGG(UA-----AGU)UCCGAC|CUGCAUGAAUGGCGUAACGAG M.jannas.B 2500 ACCCCCACUGUCCCGGGCCGGA-ACCCG|GUGAACCU|-ACCAU-UCCGG M.jannas.B 2550 (-UGCAAA-GG)CCGGAGACCCCCAGUGGGAAGCGAAGACCCCGUGG|AG M.jannas.B 2600 CUUUACUGC|AGCCUGUCGUU|GGGGCAUGGCCGUGGGUGCACAGCGUAG M.jannas.B 2650 GUGGGAGCCGUCG---AAGCCACCCC(UCCG-)GGGGUGGU-GGAGGCGC M.jannas.B 2700 CCAUGGGACACCACC|CACCCAUGGCCAUGUCCCuaac------ccc(gu M.jannas.B 2750 aaa-)ggg-----ggacACCGGCAGGUGGGCAGUUUGGCUG(GGG)CGGC M.jannas.B 2800 AC|CCCCCU(GAAAAGGCAUC)AGGGGG|G|C|CCAAAGGUCGGC|UCAG M.jannas.B 2850 GCGGG(UCAGAAC)UCCGCCGUGGA|GU(G|C-AAGG)GCAAAAGCCGGC M.jannas.B 2900 CUGACUUGGUCGG(uaaaagagg-)CCGACCAAGAGGC(GAAA)GCCGGG M.jannas.B 2950 |CCUAGCGAACCCCUGUGC-CUC(--accgaug)GGG|GCCAGGG-auaa M.jannas.B 3000 c|aga--aAAGCUACCC|CGGG|GAUAACAG|AGUUGUCGCGGGCAAGA( M.jannas.B 3050 GCCCAUA)UCGACCCCGCGGCUUGCUACAUCGAUGUC|GGUU|C|UUCCC M.jannas.B 3100 |AUCC|UGGGCCU(GCAGCA)GGGCCCAAGGGU|GGGGC(UGUUC)GCCC M.jannas.B 3150 AUUAAAGGGGAUCGUGAGCUGGGUUUAAACC|GUC(GUGA)GACAGGUUG M.jannas.B 3200 GUUGCUAUCU|GCUGGGGG-|UG-UUGGCCGCCU|GA|GGGGAA-GGUGG M.jannas.B 3250 CUC(UAGUAC(GAGA)GGAAC)GAGCCGC|CGGCGCCUCUGGUCUACCGG M.jannas.B 3300 U|UGUCC-(GACA)-GGGCA-uuGCCGGGCA-GCUACGCGCUA-AGGGAU M.jannas.B 3350 AAGGGCU(GAAGGCAUCUA)AGCCCGAAACCCUCCCC|GAA-AAUAGGCG M.jannas.B 3400 GCC|ag|uccc----------------(uucg-)---------------- M.jannas.B 3450 ggga--cgagg|gc|UCUCC(UAUAAGA)GGAGGUUGAUAG|GCCGG|GG M.jannas.B 3500 GUGUAAGCGCCgagggc-(uuu---)-gcccgaGGCGU|UCAGCCC|G|C M.jannas.B 3550 CGGUACUAaucgccca--ag|ggcccggcagggu--~||||| M.vannieli 0 |---------------uaucu--AUUACCCUACCUGGGGAAUG|GCUUGG M.vannieli 50 |CUUGAAa|cg|cCGAUGAAGGA|CGUG(GUAAGC)U|GCGAUAAGCCUA M.vannieli 100 GGC|GAGGC(GCAUACA)GCCUUU-GAACCUAGGAUU|UC-CGAAUGGG( M.vannieli 150 ACUU-)CCU|ac------------(uuuu-)-------------gu-aau M.vannieli 200 cc-----(---gua--a---)------ggauuggUAAC|GCGGGGGAUU| M.vannieli 250 GA(AGCA)UCUUAGUACCCGCAGGAAAAGAAAUC(AA--CU)GAGA-U|U M.vannieli 300 CCGUUAGUAGA(GGCGA)UUGAACACGGAUCAGGGCAaacugaa------ M.vannieli 350 -uccc(-uucg)ggga-------gaugugguguuau-aggg-ccuucuuu M.vannieli 400 -----(-----)------ucgccug--uugagaaaagcu-GAAguugac- M.vannieli 450 (uggaac)-gucacac|u(aua)gaGGG(UGAAAGU)CCCGUA-agcgca M.vannieli 500 aucgauucagguu-----ugaagugucccuGAGUACCGUGCGu(---ugg M.vannieli 550 aua)uCGCGCGGGAAU-UUGGGAG(GcaucaA-)CUUCCAACUCUAAAUA M.vannieli 600 cg-uUUCAAGACCGAUAGCGUAC-UAGUACC(GCGA)GGGAAAGCUGAAA M.vannieli 650 AGCACCCU(u-aac)AGGGUGUG-AAAAGAGCCUGAAACCAGGUAGGuau M.vannieli 700 g-gaauggcguggccc--caaagg-----caacuguucugaaggaaaccg M.vannieli 750 uc(gcaa-)ggcgg---cuguacgaa-gaacaga--gcca--ggguugcg M.vannieli 800 ucCUCCGU(UUCGAAA|A)ACGG|GCCGGGGAGUGUAU-UGUUGUGGCGA M.vannieli 850 GCUUAAgauc(--uucac)gaucGAAGGCGUAGG(GAAA)CCAacaaguc M.vannieli 900 cgcaga-----(auc-)-----uuuagggacggGGUCU(uaa--)GGGCC M.vannieli 950 CGGAGUCACAGCAAUACGACCCGAAACCGGGCGAUCUAGGCCGGGG|CAA M.vannieli 1000 GGUGAAGUCCCUC(AACU)GAGGGAUGGAGGCCUG-ca-gag-u-ug-uu M.vannieli 1050 (gccguucga)agcacu|cuucuGACCUCGGUCUAGGGGU(GAAAG)GCC M.vannieli 1100 AAUCGAGCCCGG-AGAUAGCUGGUUCCCCUCGAAGUGACU(CUCA)GGUC M.vannieli 1150 AGC|CAGAGUUca-|ggu|-aguCGGCA|GGGUAG|AGC-ACUGAUAAGA M.vannieli 1200 ugguuaG|GGGAA(gaaa-)UUCCU-Cg-CUGUUUUGUCAAACUCCGAAC M.vannieli 1250 C|UGUCGUCGCCgu---a|gGCUCUG-AGUGAGGGCAU-A-CGG(G-UAA M.vannieli 1300 G)CUGU-AUGUCCGAGACGG(GAAUAG)CCGAGACUUG-GGUUAAGGC|C M.vannieli 1350 CCUAAAUGCCGAUUA-AGUGugaa---cacgaaGGGCGUCCUUGGUCUAA M.vannieli 1400 GACAGCAGGGAGGUUGGC(UUAGAAGCA)GCCACCCU|U(UAA)A|GAGU M.vannieli 1450 GC(GUAACA)GC|UCACCUGUCGAGAUCAAGGGC|CCCGAAAAUGGA-CG M.vannieli 1500 GGGCU-AAAUCGGC|U|GCCGAGACC|CAAG|ggcacc----(gcaa--) M.vannieli 1550 ----ggugauccCGUAGGGGGG|CGUUCUGCG-AGGGCAGAAGUUCGG-C M.vannieli 1600 U(GUGA)AGUCGAGUGG|ACCUCGUAGAAAUGAAGAUCCCGGU|AGUAGU M.vannieli 1650 AACagcauaaGUGGGG(UGAGAA-U)CCC-CAC|CGCCGAAG-GGGCAAG M.vannieli 1700 GGUUCCACAGCAAUG-(UUUGU)CA|GCUGUGGGUAAGC|CGG|-uCCUA M.vannieli 1750 ACUCUCG-AGG(UAACU)CCU--uuGAGAGGAAA-GGGAAACAGG(UUAA M.vannieli 1800 UAUU)CCUGU|GC-caucuaga-uacg---cgug(-gcaa)cacaa-ggu M.vannieli 1850 uagu-uuccaacgcuucuggguaggcug|aguguu(-----cu-ugucug M.vannieli 1900 ------)gacauu|-caagcuua-uaagucCGGGGAGAG-UU(GUAAU)A M.vannieli 1950 A|CGAGAACCG--gauga-aagagugaug-|agc|ucucc(--guua)gg M.vannieli 2000 agaguu-cggccgaucucug-|gagcccgugaaaagggaacuagcaa--- M.vannieli 2050 ggauucuagau--g|U|CCGUACCCAGAACC(GACACU)GG|UGCCCCUA M.vannieli 2100 GG(ugaguau)CCUAA-GGCGU||AGCGGA-UG-AAUCUAGUCGAGGGAA M.vannieli 2150 GUCGGCAAAUUGGCUCCGUAAC(UUCG)GGAGAAGGAGU|GCCAGU---g M.vannieli 2200 aucuugu----(-uuaaau)---augggauc--GCUGGU|C(GCA)GUGA M.vannieli 2250 CCAGGGAGGUC|CGACUGU(UUAAUACAA)ACAUAGGUCUUAG|CGAGCC M.vannieli 2300 U(GAA-A)AGGUGUGUACUAAGGCCGACGCCUGCCCAGU|GCUGGUACGU M.vannieli 2350 GAA----ccccggu---(ucca)----accggg----cGAAGCG|CCAGU M.vannieli 2400 AAAC|GGC|GGGGGU(AACUAUA)ACCCUC|U(UAA)GGUAGCGAAAUUC M.vannieli 2450 CUU|GUCGGG(CA-----AGU)UCCGAC|CUGCAUGAAUGGCGUAACGAG M.vannieli 2500 ACCUCCACUGUCCCCGACUAGA-AUCCG|GUGAACCU|-ACCAU-UCCGG M.vannieli 2550 (-CGCAAA-GG)CCGGAGACUUCCAGUGGGAAGCGAAGACCCCGUGG|AG M.vannieli 2600 CUUUACUGC|AGCCUGUCGUU|GGGGCAUGGUUGUGAGUGUACAGUGUAG M.vannieli 2650 GUGGGAGCCAUCG---AAACCUUUUC(GCCA-)GGAAAGGU-GGAGGCGA M.vannieli 2700 UCCUGGGACACCACC|CUCUCAUGACCAUGUUCCucac------ccu(-- M.vannieli 2750 uuu-)agg-----ggacACCGGUAGGUGGGCAGUUUGGCUG(GGG)CGGU M.vannieli 2800 AC|CCUCCU(AAAAAUGCAUC)AGGAGG|G|C|CCAAAGGUUGGC|UCAA M.vannieli 2850 GCGGG(UCAGGAC)UCCGCUGUUGA|GU(G|U-AAGG)GCAAAAGCCAGC M.vannieli 2900 CUGACUUUGUUGC(caacaaaac-)GCAACGAAGAGGC(GAAA)GCCGGG M.vannieli 2950 |CCUAACGAACCCCUGUGC-CUC(--acugaug)GGG|GCCAGGG-auga M.vannieli 3000 c|aaa--aAAGCUACCC|CGGG|GAUAACAG|AGUUGUCGCGGGCAAGA( M.vannieli 3050 GCCCAUA)UCGACCCCGCGGCUUGCUACCUCGAUGUC|GGUU|U|UUCCC M.vannieli 3100 |AUCC|UGGGUCU(GCAGCA)GGACCCAAGGGU|GGGGC(UGUUC)GCCC M.vannieli 3150 AUUAAAGGGGAUCAUGAGCUGGGUUUAGACC|GUC(GUGA)GACAGGUUG M.vannieli 3200 GUUGCUAUCU|GCUGGAUG-|UG-UAGGCUGUCU|GA|GGGAAA-GGUGG M.vannieli 3250 CUC(UAGUAC(GAGA)GGAAC)GGGCCGU|CGGCGCCUCUAGUCGAUCGG M.vannieli 3300 U|UGUCu-(GACA)-AGGCA-cuGCCGAGCA-GCCACGCGCCA-AGAGAU M.vannieli 3350 AAGAGCU(GAAAGCAUCUA)AGCUCGAAAUUCAUCCU|GAA-AAUAGACA M.vannieli 3400 GCC|gu|uucc----------------(uucg-)---------------- M.vannieli 3450 ggaa--cgaga|ac|UCCCG(UAGAAGA)CGGGUUUGAUAG|GCUAG|GG M.vannieli 3500 GUGUACGCAUCaagg---(uucuu-)---ccgaGAUGU|UCAGCCC|G|C M.vannieli 3550 UAGUACUAacaguucgag--|agaua---a-------||||| M.thermo.1 0 |------------------cuuuuuUAUGCCGUCUGGGGGAUG|GCUUGG M.thermo.1 50 |CUUGAGu|cg|cUGAUGAAGGC|CGUG(GCAAGC)U|GCGAUAAGCCCA M.thermo.1 100 GGG|gAGGA(GCAUGCA)UCCUUg-GAUCCUGGGAUU|GC-CGAAUGGG( M.thermo.1 150 ACUU-)CCC|agccaaccc-----(uucg-)-----ggguugugcu-acu M.thermo.1 200 cccu---(---guu-au---)----ggggaggggGAAC|CCGCCGAACU| M.thermo.1 250 GA(AACA)UCUUAGUAGGCGGAGGAAGAGAAAGC(AA-auU)GCGAcU|G M.thermo.1 300 CCGUGAGUAAU(GGCGA)AUGAAAGCGGUGCAGGACAaacugaa-ccccu M.thermo.1 350 ucgca(-guga)uguguugggg-gaugugguguugu--cgaucggugcgu M.thermo.1 400 -----(auggg)-----ggugccggguguguggu--guu-GAAcuugggc M.thermo.1 450 (uggaau)gcccgggc|c(gua)gaGGG(UUAAAGC)CCCGUA-gau--- M.thermo.1 500 gcccaugcuuggcucccugcacc-uuuccuGAGUAGCGUCCAu(---ugg M.thermo.1 550 aua)uUGGGCGUGAAG-CUGGGAG(GcaucgA-)CUCCUAAUCCUAAAca M.thermo.1 600 cg-uCUCAAGUCCGAUAGCGAAC-UAGUACC(GUGA)GGGAAAGCUGAAA M.thermo.1 650 AGUACCCC(ugaua)GGGGUGUG-AAAAGUGCCUGAAACCAGGCGGUGac M.thermo.1 700 a-gcccggcacggcau--ggaaggaauguggcugccccuguaagaaacca M.thermo.1 750 ug(guaa-)caugg---gaguaugugugggugguugaaca--gugucgug M.thermo.1 800 ucGUCCGU(CUUGAAA|C)ACGG|GCCAGGGAGUUUAGUGGUUGUGGCGA M.thermo.1 850 GGCUAAGAag(ugugucg)cuuuguAGUCGUAGG(GAAA)CCGacagguc M.thermo.1 900 cgcagcagcc-(uuug)-ugcugugagggacggGGUCU(uaaua)GGGCC M.thermo.1 950 UGGAGUCACAGCUCUAAAACCCGAAGCCGGUCGAUCUAGCCCUGGG|UAG M.thermo.1 1000 GGUGAAGUCGCUC(UUAC)GAGUGAUGGAGGCCCG-ca-ggg-g-ug-uu M.thermo.1 1050 (gucgugcga)aacauu|ccucuAACCUGGGGUUAGUGGU(GAAAG)GCC M.thermo.1 1100 AAUCAAGGCCGG-UGACAGCUGGUUCCACCCGAAAUGGCU(CGUA)GGCC M.thermo.1 1150 AGC|CUGACUgga-|gau|-aggUGGCG|GGGUAG|AGC-ACUUAUUGGG M.thermo.1 1200 UGuuuag|gggga(gaga-)UCCCU-CG-GCAUCCUGUAAAACUCCGAAC M.thermo.1 1250 U|cgucaccgucgu-uga|agguugg-AGUCAGGGGCG-C-GGG(G-UAA M.thermo.1 1300 G)CCUG-UGUCCCGAGAGAG(GAACAA)CUCAGACUGG-GGUUAAGGU|C M.thermo.1 1350 CCUAAAUGCCGGCUA-AGUCu----------aaGGGGGUCUUUGGCCCUA M.thermo.1 1400 GACAAUGGGAAGGUGGGC(UUAGAAGCA)GCCAUCCU|U(UAA)A|GAGU M.thermo.1 1450 UC(GUAACA)GA|UCACCCAUCGAGGUCAAAGGC|ACCGAAAAUGGA-GG M.thermo.1 1500 GGAAUUAAGCCGGC|U|ACCGAUACC|UCAG|agcaccac--(uggu--) M.thermo.1 1550 --gugguggucuUGUAGGGUGG|CGUCCGGUU-GGGGUUGAAGUGGGG-G M.thermo.1 1600 C(GUGA)GCUCCUGUGG|ACCCGGCUGGAAUGAGGAUCCUGGU|AGUAGU M.thermo.1 1650 AGCagcg-aaGUGAGG(UGUGAA-U)CCU-UAC|CGCCGGAG-GGGCUAG M.thermo.1 1700 GGUUCCUUGGCAAUG-(UUCGU)CA|GCCAAGGGUUAGU|CGG|-uccUA M.thermo.1 1750 Aggccgu-GGG(UAAUG)UCCauuuuggucGAAA-GGGUAACGGG(UUAA M.thermo.1 1800 UAUU)CCUGU|AC-gguccagg-uacu---ugcg(-guga)cgcuggguu M.thermo.1 1850 gggc-uucugacgcuuugggguaggcug|agcggg(-----au-uuucgu M.thermo.1 1900 ------)ccuguu|-uaaggguu-gaagccUGGGGAGAG-CC(GUAAU)G M.thermo.1 1950 G|CGAGAACCA-ugguga-aggccugaau-|agc|caucc(cuugu-)gg M.thermo.1 2000 gugguu-uggcugugcccug-|gaguccuugaaaagggaguccuucuug- M.thermo.1 2050 ggauccuggau--c|G|CCGUACCGAGAUCC(GACACU)GG|UGCCCCUA M.thermo.1 2100 GC(ugaguag)GCUAA-GGUGU||GUUGGG-GU-AACCUGGCUAAGGGAA M.thermo.1 2150 AUCGGCAAAUUGGCCCCGUAAC(UUUG)GGAGAAGGGGU|GCCAGC---c M.thermo.1 2200 au---------(---gcgg)--------aug--GCUGGU|C(GCA)GUGA M.thermo.1 2250 CAGGGGGGGCC|CGACUGU(UUAAUAAAA)ACAUAGCUCCUAG|CUAGCC M.thermo.1 2300 C(GUG-A)GGGUGUGUACUGGGGGCGACACCUGCCCAGU|GCCGGCACGU M.thermo.1 2350 GAA----gcccugg---(uuca)----acgggg----uGAAGCG|CCGGU M.thermo.1 2400 AAAC|GGC|GGGGGU(AACUAUA)ACCCUC|U(UAA)GGUAGCGAAAUGC M.thermo.1 2450 CUU|GCCGGA(UA-----AGU)ACCGGC|CUGCAUGAAUGGUUGAACGAG M.thermo.1 2500 GUCCCUACUGUCCCUAGCCAGG-ACCUA|GUGAAGCU|-GCUGU-UCUGG M.thermo.1 2550 (-UGCACA-AG)CCAGAGACUCCCAGUGGGAAGCGAAGACCCCGUAG|AG M.thermo.1 2600 CUUUACUGC|AGUCUGCUGUU|GGGGCUUGGUCAUGGGUAUGCAGUGUAG M.thermo.1 2650 GUGGGAGGCGUCG--augCCAUGGUC(GCCA-)GGCUGUGGUGGAGUCGG M.thermo.1 2700 UCAUGAGACACCACC|UUCCUGUGACUGUGUCUCuaac----cccau(-g M.thermo.1 2750 uuu-)guggg---ggacAUCGGUAGAUGGGCAGUUUGGCUG(GGG)CGGC M.thermo.1 2800 AC|GCGCUU(GAAAUGGUAUC)AAGCGC|G|C|CCUAAGGUCGGC|UCAG M.thermo.1 2850 GCGGG(ACAGAGA)UCCGCUGUAGA|GU(G|U-AAGG)GCAUAAGCCGGC M.thermo.1 2900 UUGACUGUGCUCC(uacuaguag-)GGGGUGCAGGUGC(GAGA)GCAGGG M.thermo.1 2950 |CCUAGCGAACCCCAGAGU-CCU(-cgucggug)GGG|GCCUGGG-auga M.thermo.1 3000 c|aga--aAAGCUACCU|CGGG|GAUAACUG|GGUGGUCGCAGGCAAGA( M.thermo.1 3050 GCCCAUA)UCGACCCUGCGGCUUGCUACUUCGAUGUC|GGUU|C|UUUCC M.thermo.1 3100 |AUCC|UGGGUGU(GCAGCA)GCACCCAAGGGU|GGGGU(UGUUC)GCCC M.thermo.1 3150 AUUAAAGGGGAACGUGAGCUGGGUUUAGACC|GUC(GUGA)GACAGGUUG M.thermo.1 3200 GUUGCUAUCU|ACUGGGAG-|UGUGuGGUUGCCU|GA|GGGGAA-GGUGG M.thermo.1 3250 UUC(CAGUAC(GAGA)GGAAC)GGACCGU|CGGCGCCUCUGGUUUACCGG M.thermo.1 3300 U|UAUCC-(GAGU)-GGGUA-uuGCCGGGCG-GCUACGCGCUAUGAUUAU M.thermo.1 3350 AAAGGCU(GAAGGCAUCUA)AGCCUGAgguuuuCCCU|GAA-AAUAGGUG M.thermo.1 3400 GCU|u-|--------------------(-----)---------------- M.thermo.1 3450 ------gugga|cu|GCGGG(UAGAAGA)CCUGUUUGUUGG|GGCGG|GG M.thermo.1 3500 GUGUGAGCUUCgaggccu(guuuu-)gggccgaGUUGU|UUAGCCU|G|C M.thermo.1 3550 CGUUUCCAagguuuuu----|--------ugucccu-||||| M.thermo.2 0 |------------------cuuauuUAUGCCGUCUGGGGGAUG|GCUUGG M.thermo.2 50 |CUUGAGu|cg|cUGAUGAAGGC|CGUG(GCAAGC)U|GCGAUAAGCCCA M.thermo.2 100 GGG|gAGGA(GCAUGCA)UCCUUg-GAUCCUGGGAUU|GC-CGAAUGGG( M.thermo.2 150 ACUU-)CCU|ggccgccccugcac(ucu--)gugcgggggcugguc-acu M.thermo.2 200 cccc---(---uucucu---)----ggggaggggGAAC|CCGCUGAACU| M.thermo.2 250 GA(AACA)UCUUAGUAGGCGGAGGAAGAGAAAGC(AA-uaU)GCGA-U|G M.thermo.2 300 CCGUGAGUAAU(GGCGA)AUGAAAGCGGUGGAGGACAaacugaa--ucca M.thermo.2 350 ucaug(-guga)cguggugga--gaugugguguug--cgga-cccccuua M.thermo.2 400 -----(---gg)-----gguuccaggugugguugg-guu-GAAcuugggc M.thermo.2 450 (uggaau)gcccgggc|c(gua)gaGGG(UUAAAGC)CCCGUA-gac-uu M.thermo.2 500 gcug-ugccuggcccugcagggguguuccuGAGUAGCGUCCAu(---ugg M.thermo.2 550 aua)uUGGGCGUGAAG-CUGGGAG(GcaucgA-)CUCCUAAUCCUAAAca M.thermo.2 600 cg-uCUCAAGUCCGAUAGCGAAC-UAGUACC(GUGA)GGGAAAGCUGAAA M.thermo.2 650 AGUACCCC(ugaua)GGGGUGUG-AAAAGUGCCUGAAACCAGGCGGUGac M.thermo.2 700 a-gcccggcacggcau--ggaaggaaugaggcuugcccuguaagaaacca M.thermo.2 750 ug(gcaa-)caugg---gaguaugug-ggcuggcugauca--gugucgug M.thermo.2 800 ucAUCCGU(CUUGAAA|C)ACGG|GCCAGGGAGUUUAGUGGUUGUGGCGA M.thermo.2 850 GACUAAGAag(ugugucg)cuuugaAGUCGUAGG(GAAA)CCGacagguc M.thermo.2 900 cgcagcagca-(ucug)-ugcugugagggacggGGUCU(uaaua)GGGCC M.thermo.2 950 UGGAGUCACAGCCCUAAAACCCGAAGCCGGUCGAUCUAGCCCUGGG|UAG M.thermo.2 1000 GAUGAAGUCGCUC(UUAC)GAGUGAUGGAGGUCCG-ca-ggg-g-ug-uu M.thermo.2 1050 (gucgugcga)aacauu|ccucuAACCUGGGGUUAGUGGU(GAAAG)GCC M.thermo.2 1100 AAUCAAGGCCGG-UGACAGCUGGUUCCACCCGAAAUGGCU(CGUA)GGCC M.thermo.2 1150 AGC|CUGACUgga-|ggu|-uggUGGCG|GGGUAG|AGC-ACUUAUUGGG M.thermo.2 1200 UGuuuag|gggga(gaaa-)UCCCU-CG-GCAUCCUGUAAAACUCCGAAC M.thermo.2 1250 U|cgucaccgcugu-uga|agguugg-AGUCAGGGGCG-C-GGG(G-UAA M.thermo.2 1300 G)CCUG-UGUCCCGAGAGAG(GAACAA)CUCAGACUGG-GGUUAAGGU|C M.thermo.2 1350 CCUAAAUGCCGGCUA-AGUCu----------aaGGGGGUCUUUGGCCCUA M.thermo.2 1400 GACAAUGGGAAGGUGGGC(UUAGAAGCA)GCCAUCCU|U(UAA)A|GAGU M.thermo.2 1450 UC(GUAACA)GA|UCACCCAUCGAGGUCAAAGGC|ACCGAAAAUGGA-GG M.thermo.2 1500 GGAAUUAAGCCGGC|U|ACCGAUACC|UCAG|agcaccac--(uuuugu) M.thermo.2 1550 --gugguggucuUGUAGGGUGG|CGucccGUU-GGGGUUGAAGUGGGG-G M.thermo.2 1600 C(GUGA)GCUCCUGUGG|ACCCUGCGGGAAUGAGGAUCCUGGU|AGUAGU M.thermo.2 1650 AGCagca-aaGUGAGG(UGAGAA-U)CCU-UAC|CGCCGGAG-GGGCUAG M.thermo.2 1700 GGUUCCUUGGCAAUG-(UUCGU)CA|GCCAAGGGUUAGU|CGG|-uccUA M.thermo.2 1750 Aggccau-GGG(UAAUG)UCCau-guggucGAAA-GGGUAACAGG(UUAA M.thermo.2 1800 UAUU)CCUGU|AC-gguccagg-uacu---ugcg(-guga)cgcuggguu M.thermo.2 1850 gggc-uucugacgcuucgggguaggcug|agcggg(-----au-uuucgu M.thermo.2 1900 ------)ccuguu|-uaaggguu-gaagccUGGGGAGAG-CC(GUAAU)G M.thermo.2 1950 G|CGAGAACUAuugguga-aggccugaau-|agc|cacuc(cuuguu)gg M.thermo.2 2000 gugguu-cggcugugcccug-|gaguccuugaaaagggaguccuucuug- M.thermo.2 2050 ggauccuggau--c|G|CCGUACCGAGAUCC(GACACU)GG|UGCCCCUA M.thermo.2 2100 GC(ugaguag)GCUAA-GGCGU||GUUGGG-GU-AACCUGGCUAAGGGAA M.thermo.2 2150 AUCGGCAAAUUAGCCCCGUAAC(UUUG)GGAGAAGGGGU|GCCAGC---c M.thermo.2 2200 au---------(---guag)--------aug--GCUGGU|C(GCA)GUGA M.thermo.2 2250 CAGGGGGGGCC|CGACUGU(UUAAUAAAA)ACAUAGCUCCUAG|CUAGCC M.thermo.2 2300 C(GUG-A)GGGUGUGUACUGGGGGCGACACCUGCCCAGU|GCCGGCACGU M.thermo.2 2350 GAA----gcccugg---(uuca)----acgggg----uGAAGCG|CCGGU M.thermo.2 2400 AAAC|GGC|GGGGGU(AACUAUA)ACCCUC|U(UAA)GGUAGCGAAAUGC M.thermo.2 2450 CUU|GCCGGA(UA-----AGU)ACCGGC|CUGCAUGAAUGGUUGAACGAG M.thermo.2 2500 GUCCCUACUGUCCCUAGCCAGG-ACCUG|GUGAAGCU|-GCUGU-UCUGG M.thermo.2 2550 (-UGCACA-AG)CCAGAGACUCCCAGUGGGAAGCGAAGACCCCGUAG|AG M.thermo.2 2600 CUUUACUGC|AGUCUGCUGUU|GGGGCUUGGUCAUGGGUAUGCAGUGUAG M.thermo.2 2650 GUGGGAGGUGUCG--augCCAUGGUC(GCCA-)GGCCGUGGUGGAGCCGG M.thermo.2 2700 UCAUGAGACACCACC|UUCCUGUGACUGUGUCUCuaac----ccccc(au M.thermo.2 2750 ugu-)ggggg---ggacAUCGGUAGAUGGGCAGUUUGGCUG(GGG)CGGC M.thermo.2 2800 AC|GCGCUU(GAAAUGGUAUC)AAGCGC|G|C|CCUAAGGUCGGC|UCAG M.thermo.2 2850 GCGGG(ACAGAGA)UCCGCUGUAGA|GU(G|U-AAGG)GCAUAAGCCGGC M.thermo.2 2900 UUGACUGUGCUCC(uacuaguag-)GGUGUGCAGGUGC(GAGA)GCAGGG M.thermo.2 2950 |CCUAGCGAACCCCAGAGU-CCU(-cgucggug)GGG|GCCUGGG-auga M.thermo.2 3000 c|aga--aAAGCUACCU|CGGG|GAUAACUG|GGUGGUCGCAGGCAAGA( M.thermo.2 3050 GCCCAUA)UCGACCCUGCGGCUUGCUACUUCGAUGUC|GGUU|C|UUUCC M.thermo.2 3100 |AUCC|UGGGUGU(GCAGCA)GCACCCAAGGGU|GGGGU(UGUUC)GCCC M.thermo.2 3150 AUUAAAGGGGAACGUGAGCUGGGUUUAGACC|GUC(GUGA)GACAGGUUG M.thermo.2 3200 GUUGCUAUCU|ACUGGGAG-|UGUGuGGUUGCCU|GA|GGGGAA-GGUGG M.thermo.2 3250 UUC(CAGUAC(GAGA)GGAAC)GGACCGU|CGGCGCCUCUGGUUUACCGG M.thermo.2 3300 U|UAUCC-(GAGU)-GGGUA-uuGCCGGGCG-GCUACGCGCUAUGAUUAU M.thermo.2 3350 AAAGGCU(GAAGGCAUCUA)AGCCUGAgguuuuCCCU|GAA-AAUAGGCG M.thermo.2 3400 GCU|u-|--------------------(-----)---------------- M.thermo.2 3450 ------gugga|cc|GCGGG(UAGAAGA)CCUGUUUGUUGG|GGCGG|GG M.thermo.2 3500 GUGUGAGCUUCgaggccu(guuuuu)gggucgaGUUGU|UUAGCCU|G|C M.thermo.2 3550 CGUUUCCAagguuuuu----|--------ugucccu-||||| M.thermo.3 0 |------------------cuuauuUAUGCCGUCUGGGGGAUG|GCUUGG M.thermo.3 50 |CUUGAGu|cg|cUGAUGAAGGC|CGUG(GCAAGC)U|GCGAUAAGCCCA M.thermo.3 100 GGG|gAGGA(GCAUGCA)UCCUUg-GAUCCUGGGAUU|GC-CGAAUGGG( M.thermo.3 150 ACUU-)CCU|ggccgucccugcac(ucu--)gugcgggggcugguc-acu M.thermo.3 200 ccccu--(---uuucuu---)---gggggaggggGAAC|CCGCUGAACU| M.thermo.3 250 GA(AACA)UCUUAGUAGGCGGAGGAAGAGAAAGC(AA-uaU)GCGA-U|G M.thermo.3 300 CCGUGAGUAAU(GGCGA)AUGAAAGCGGUGGAGGACAaacugaa--ucca M.thermo.3 350 ucaug(-guga)cguggugga--gaugugguguug--cgga-cccccugc M.thermo.3 400 -----(uuagg)-----gguuccaggugugguugg-guu-GAAcuugggc M.thermo.3 450 (uggaau)gcccgggc|c(gua)gaGGG(UUAAAGC)CCCGUA-gac-uu M.thermo.3 500 gcug-ugccuggcccugcggggguguuccuGAGUAGCGUCCAu(---ugg M.thermo.3 550 aua)uUGGGCGUGAAG-CUGGGAG(GcaucgA-)CUCCUAAUCCUAAAca M.thermo.3 600 cg-uCUCAAGUCCGAUAGCGAAC-UAGUACC(GUGA)GGGAAAGCUGAAA M.thermo.3 650 AGUACCCC(ugaua)GGGGUGUG-AAAAGUGCCUGAAACCAGGCGGUGac M.thermo.3 700 a-gcccggcacggcau--ggaaggaaugaggcuugcccuguaagaaacca M.thermo.3 750 ug(gcaa-)caugg---gaguaugug-ggcuggcugauca--gugucgug M.thermo.3 800 ucAUCCGU(CUUGAAA|C)ACGG|GCCAGGGAGUUUAGUGGUUGUGGCGA M.thermo.3 850 GACUAAGAag(ugugucg)cuuugaAGUCGUAGG(GAAA)CCGacagguc M.thermo.3 900 cgcagcagca-(ucug)-ugcugugagggacggGGUCU(uaaua)GGGCC M.thermo.3 950 UGGAGUCACAGCCCUAAAACCCGAAGCCGGUCGAUCUAGCCCUGGG|UAG M.thermo.3 1000 GAUGAAGUCGCUC(UUAC)GAGUGAUGGAGGUCCG-ca-ggg-g-ug-uu M.thermo.3 1050 (gucgugcga)aacauu|ccucuAACCUGGGGUUAGUGGU(GAAAG)GCC M.thermo.3 1100 AAUCAAGGCCGG-UGACAGCUGGUUCCACCCGAAAUGGCU(CGUA)GGCC M.thermo.3 1150 AGC|CUGACUgga-|ggu|-uggUGGCG|GGGUAG|AGC-ACUUAUUGGG M.thermo.3 1200 UGuuuag|gggga(gaaa-)UCCCU-CG-GCAUCCUGUAAAACUCCGAAC M.thermo.3 1250 U|cgucaccgcugu-uga|agguugg-AGUCAGGGGCG-C-GGG(G-UAA M.thermo.3 1300 G)CCUG-UGUCCCGAGAGAG(GAACAA)CUCAGACUGG-GGUUAAGGU|C M.thermo.3 1350 CCUAAAUGCCGGCUA-AGUCu----------aaGGGGGUCUUUGGCCCUA M.thermo.3 1400 GACAAUGGGAAGGUGGGC(UUAGAAGCA)GCCAUCCU|U(UAA)A|GAGU M.thermo.3 1450 UC(GUAACA)GA|UCACCCAUCGAGGUCAAAGGC|ACCGAAAAUGGA-GG M.thermo.3 1500 GGAAUUAAGCCGGC|U|ACCGAUACC|UCAG|agcaccac--(uuuugu) M.thermo.3 1550 --gugguggucuUGUAGGGUGG|CGucccGUU-GGGGUUGAAGUGGGG-G M.thermo.3 1600 C(GUGA)GCUCCUGUGG|ACCCUGCGGGAAUGAGGAUCCUGGU|AGUAGU M.thermo.3 1650 AGCagca-aaGUGAGG(UGAGAA-U)CCU-UAC|CGCCGGAG-GGGCUAG M.thermo.3 1700 GGUUCCUUGGCAAUG-(UUCGU)CA|GCCAAGGGUUAAU|CGG|-uccUA M.thermo.3 1750 Aggccau-GGG(UAAUG)UCCau-guggucGAAA-GGGUAACAGG(UUAA M.thermo.3 1800 UAUU)CCUGU|AC-gguccagg-uacu---ugcg(-guga)cgcuggguu M.thermo.3 1850 gggc-uucugacgcuucgggguaggcug|agcggg(-----au-uuucgu M.thermo.3 1900 ------)ccuguu|-uaaggguu-gaagccUGGGGAGAG-CC(GUAAU)G M.thermo.3 1950 G|CGAGAACUAuugguga-aggccugaau-|agc|cacuc(cuuguu)gg M.thermo.3 2000 gugguu-cggcugugcccug-|gaguccuugaaaagggaguccuucuug- M.thermo.3 2050 ggauccuggau--c|G|CCGUACCGAGAUCC(GACACU)GG|UGCCCCUA M.thermo.3 2100 GC(ugaguag)GCUAA-GGCGU||GUUGGG-GU-AACCUGGCUAAGGGAA M.thermo.3 2150 AUCGGCAAAUUAGCCCCGUAAC(UUUG)GGAGAAGGGGU|GCCAGC---c M.thermo.3 2200 au---------(---guag)--------aug--GCUGGU|C(GCA)GUGA M.thermo.3 2250 CAGGGGGGGCC|CGACUGU(UUAAUAAAA)ACAUAGCUCCUAG|CUAGCC M.thermo.3 2300 C(GUG-A)GGGUGUGUACUGGGGGCGACACCUGCCCAGU|GCCGGCACGU M.thermo.3 2350 GAA----gcccugg---(uuca)----acgggg----uGAAGCG|CCGGU M.thermo.3 2400 AAAC|GGC|GGGGGU(AACUAUA)ACCCUC|U(UAA)GGUAGCGAAAUGC M.thermo.3 2450 CUU|GCCGGA(UA-----AGU)ACCGGC|CUGCAUGAAUGGUUGAACGAG M.thermo.3 2500 GUCCCUACUGUCCCUAGCCAGG-ACCUG|GUGAAGCU|-GCUGU-UCUGG M.thermo.3 2550 (-UGCACA-AG)CCAGAGACUCCCAGUGGGAAGCGAAGACCCCGUAG|AG M.thermo.3 2600 CUUUACUGC|AGUCUGCUGUU|GGGGCUUGGUCAUGGGUAUGCAGUGUAG M.thermo.3 2650 GUGGGAGGUGUCG--augCCAUGGUC(GCCA-)GGCCGUGGUGGAGCCGG M.thermo.3 2700 UCAUGAGACACCACC|UUCCUGUGACUGUGUCUCuaac---cccucg(-u M.thermo.3 2750 uuu-)uggggg--ggacAUCGGUAGAUGGGCAGUUUGGCUG(GGG)CGGC M.thermo.3 2800 AC|GCGCUU(GAAAUGGUAUC)AAGCGC|G|C|CCUAAGGUCGGC|UCAG M.thermo.3 2850 GCGGG(ACAGAGA)UCCGCUGUAGA|GU(G|U-AAGG)GCAUAAGCCGGC M.thermo.3 2900 UUGACUGUGCUCC(uacuaguag-)GGGGUGCAGGUGC(GAGA)GCAGGG M.thermo.3 2950 |CCUAGCGAACCCCAGAGU-CCU(-cgucggug)GGG|GCCUGGG-auga M.thermo.3 3000 c|aga--aAAGCUACCU|CGGG|GAUAACUG|GGUGGUCGCAGGCAAGA( M.thermo.3 3050 GCCCAUA)UCGACCCUGCGGCUUGCUACUUCGAUGUC|GGUU|C|UUUCC M.thermo.3 3100 |AUCC|UGGGUGU(GCAGCA)GCACCAAAGGGU|GGGGU(UGUUC)GCCC M.thermo.3 3150 AUUAAAGGGGAACGUGAGCUGGGUUUAGACC|GUC(GUGA)GACAGGUUG M.thermo.3 3200 GUUGCUAUCU|ACUGGGAG-|UGUGuGGUUGCCU|GA|GGGGAA-GGUGG M.thermo.3 3250 UUC(CAGUAC(GAGA)GGAAC)GGACCGU|CGGCGCCUCUGGUUUACCGG M.thermo.3 3300 U|UAUCC-(GAGU)-GGGUA-uuGCCGGGCG-GCUACGCGCUAUGAUUAU M.thermo.3 3350 AAAGGCU(GAAGGCAUCUA)AGCCUGAgguuuuCCCU|GAA-AAUAGGCG M.thermo.3 3400 GCU|u-|--------------------(-----)---------------- M.thermo.3 3450 ------gugga|cc|GCGGG(UAGAAGA)CCUGUUUGUUGG|GGCGG|GG M.thermo.3 3500 GUGUGAGCUUCgaggccu(guuuuu)gggucgaGUUGU|UUAGCCU|G|C M.thermo.3 3550 CGUUUCCAagguuuuu----|--------ugucccu-||||| M.hungatei 0 |------------------uu--cuUACGCCUGUCAGUGGAUG|GCUCGG M.hungatei 50 |UUCGGG-|ug|cCGACGAAGGG|CGUG(CCAAGC)U|GCGAUAAGCUCC M.hungatei 100 GGG|UAGAC(GCAUGGA)GUCAUU-GAACCGGAGAUC|CC-CGAAUAGG( M.hungatei 150 acau-)CCA|gaugc---------(auaaa)---------gc-auc-auu M.hungatei 200 ccg----(---cca--u---)-----cggaaaggGAAC|GCCCCGAAUU| M.hungatei 250 GA(AACA)UCUUAGUAGGGGCAGGAGAAGAAACC(aa--cc)GGGA-U|G M.hungatei 300 UCGUUAGUAGA(GGCGA)UCGAACACGACAGAGUUCAaaccgaa------ M.hungatei 350 --ucc(-uucg)gga--------gaugugguguau---gga-ccgcggca M.hungatei 400 -----(-----)-----uaagauuu--gcauucagaacu-GAAguugcc- M.hungatei 450 (uggaac)-gguauac|c(aga)gaGGG(UGACAGU)CCCGUA-UGUgua M.hungatei 500 ugcaugcagacuuu-----agcgguauccuGAGUAGCGUGGGu(---cgg M.hungatei 550 aau)uCCCGCGUGAAU-GUGGGGG(ucaucaa-)CCUCCAAAACUAAAUA M.hungatei 600 cu-cCCCGAAACCGAUAGCGUAG-UAGUAGC(GUGA)GCGAAAGCUGAAA M.hungatei 650 AGCAACCC(uggaa)AGGUGUUG-AAAAGUGCCUGAAACUGACAGGUUau M.hungatei 700 c-gcgugauacggcac--gaaagg----aucuucaaagcgaaggaacgag M.hungatei 750 uu(gcga-)gacuc---aaguacggg-uuuuguug--ccg--gugucgua M.hungatei 800 ucGUACGU(UUUGAAG|A)ACGG|GCCAGAGAGUUUAU-UCUGUUGGCGA M.hungatei 850 CGGUUAAUuu(--cuaug)aaagAAGCCA-GAGG(GAAA)CCAacaaguc M.hungatei 900 cgcagcc----(guaa)----ggucagggacgaCGUAC(uacca)GUGCG M.hungatei 950 UGGAGUCAGCAGGAUAAGACCCGAAGCCCGGCGAUCUAUGCGUGGG|CAG M.hungatei 1000 GUUGAAGCGUGCC(GAAA)GGUGCGUGGAGGACCGcaa-gcg-g-uu-uu M.hungatei 1050 (gauaugcaa)aucauu|cgcgugACCUGCGUAUAGGAGU(GAAAG)AUU M.hungatei 1100 AAUCGAGCCGGG-CAUCAGCUGGUUCCUCUCGAAACAUGC(CGUA)GCAU M.hungatei 1150 GAC|CUGAUCuga-|gau|-cgacagug|AGGUAG|AGC-ACUGAUUGGG M.hungatei 1200 gaagcug|gggaa(gaaa-)uuccu-ca-cucuccugucaaaCUCCAAAU M.hungatei 1250 U|CCCUGUCAUCag-cga|cgaucggaaguccgcauuA-C-GGG(G-UAA M.hungatei 1300 G)CUUG-UAAUGCGUAAGGG(AGACAA)CCCAGACCGU-GGUUAAUGU|C M.hungatei 1350 CCUCAGUGCAGGCUC-AGUGuaaac--acugaaagUAGUCCUGGGUCAAA M.hungatei 1400 GACAACUGGGAGGUGAGC(UUAGAAGCA)GCUACCCU|U(UAA)A|AAGU M.hungatei 1450 GC(GUAACA)GC|UUACCAGUCAAGAUUCAGGGC|GCUGAAAAUGGA-CG M.hungatei 1500 GGGCUUAAGCCUGC|C|ACAGAUACC|ACGG|accauacg--(aau---) M.hungatei 1550 --uguaugauggCGUAGAGAGG|CGUCCUGCA-UGGGCGGAAGCAGGG-U M.hungatei 1600 U(GCAA)GAUCCUGUGG|ACCGUGCAGGAAUGAAAAUUCUGGC|AGUAGU M.hungatei 1650 AGAagcuuaaGAUUGG(UGAGAA-U)CCA-AUC|CGCCGCAG-GGGCUAG M.hungatei 1700 GUUUCCUCGACAAUG-(UUCGU)CA|GUCGAGGGUUAGU|CGG|-UCCUA M.hungatei 1750 AGACGUA-CCG(UAAUU)CGA--GuACGCCGAAA-GGGAAACAGG(UUAA M.hungatei 1800 UAUU)CCUGU|AC-cuguauca-----------a(-acaa)u-------- M.hungatei 1850 ------ccugacgcuuucggauaggcau|ugcgga(-----gu-caucgc M.hungatei 1900 ------)uccguc|-uaagccggauauGAAAUUGGAGUA-CC(GUAAU)G M.hungatei 1950 G|UGAGAAUUU--uucaa-aacggugaug-|---|---gg(--guaa)ca M.hungatei 2000 -------augcugauuccag-|gagcccgugaaaaggg------------ M.hungatei 2050 ----ugauacg--g|U|CCGUACCGAGAACU(GACACA)GG|UGCCCCUC M.hungatei 2100 GC(ugagaag)GCGAA-GGCGU||GUCGGG-AGUAAAUGUGUUAAGGGAA M.hungatei 2150 CUCGGCAAAUUAGCCCUGUAAC(UUUG)GGAUAAGGGGU|GCCUGC---c M.hungatei 2200 ca---------(--gcgau)--------ugg--GCAGGU|C(GCA)GUGA M.hungatei 2250 CAAGAUCGCUC|CGACUGU(CUAAUAACA)ACAUAGCAGACUG|CAACUC M.hungatei 2300 C(GAA-A)GGACUCGUAUAGUCUGUGAUUCCUGCCCAGU|GCGAGUAUCU M.hungatei 2350 GAA----caccggg---(uuca)----accgga----CGAAGGA|CUCGU M.hungatei 2400 AAAC|GGC|GGGGGU(AACUAUG)ACCCUC|U(UAA)GGUAGCGUAGUAC M.hungatei 2450 CUU|GUCGCU(UA-----AUU)GGCGAC|UUGCAUGAAUGGAAUAACGAG M.hungatei 2500 AGCGAUACUGUCCCUAACACAU-ACCCG|UUGAACCU|-UUUGU-ACUAG M.hungatei 2550 (-UGCAGA-GA)CUAGUGACUCCUUAUGGGAAGUGAAGACCCCGUGG|AG M.hungatei 2600 CUUUACUGC|AGCCUGUCGUU|GGGUUACGGUAUUACCUGCGCAGGGUAG M.hungatei 2650 AUGGGAGACGUCG---AUCCAACCCU(UGUG-)GGGGUUGG-UUAGUCAC M.hungatei 2700 CGAUGAGACACCAUC|CUGGUUUUAUUGUAAUUCuaac------uga(-u M.hungatei 2750 uua-)uca-----ggacAUCGAUAGGUAGGCAGUUUGGGUG(GGG)CGCN M.hungatei 2800 AC|ACCCUC(GAAAAAAUAUC)AAGGGU|G|C|CCUAAGGUCAAC|UCAA M.hungatei 2850 GCGGG(UCAGAAA)CCCGCUGAAGA|GU(G|UCAAGA)GCAAAAGUUGGC M.hungatei 2900 CUGACGCGAUUUC(gcauagcaa-)GAAAUCGCGAGAG(GAAA)CUCGGG M.hungatei 2950 |UCUAACGAACCAAUACGC-CCU(--guugaug)AGG|GCUAUUG-acua M.hungatei 3000 c|aga--aAAGCUACCC|CGGG|GAUAACAG|AGUCGUCGCCGGCAAGA( M.hungatei 3050 GCACAUA)UCGACCCGGCGGCUUGCUACCUCGAUGUC|GGUU|C|UUUCC M.hungatei 3100 |AUCC|UGGCUGU(GCAGCA)GCAGCCAAGGGU|GAGGU(UGUUC)GCCU M.hungatei 3150 AUUAAAGGGGAUCGUGAGCUGGGUUUAGACC|GUC(GUGA)GACAGGUCG M.hungatei 3200 GUUACUAUCU|AUAAGGAG-|UG-UUGGAAGUCU|GA|AGGCAA-GAAUG M.hungatei 3250 AAA(UAGUAC(GAGA)GGAAC)UUUCAUU|CGGCGCCACUGGUCUACCGG M.hungatei 3300 U|UGUCU-(GACA)-AGGCA-acGCCGGGCA-GCUACGCGCCA-AGAGAU M.hungatei 3350 AAAAGCU(GAAAGCAUCUA)AGCUUGAAACUCAGCCU|GAAcAAGagacu M.hungatei 3400 uca|u-|--------------------(-----)---------------- M.hungatei 3450 ------uaaag|ac|ACGGG(UAAAAGA)CCCGGUUGAUAG|GUUCG|GG M.hungatei 3500 AUGUACGCACGaag----(gcaa--)----cgaCGUGU|UCAGUCC|G|C M.hungatei 3550 GAAUACUAaucgucuu----|aa------uaacguc-||||| H.halobium 0 |---------------guggc-uacUGUGCCACCUGGUGGAUA|GCUCGG H.halobium 50 |CUCGGA-|ug|cCGACGAAGGA|CGUG(CCAAGC)U|GCGAUAAGCCUG H.halobium 100 AGG|gaGCC(GCACGGA)GGCUaa-GAACUCAGGAUC|UC-CUAAUGGG( H.halobium 150 AAUC-)CCU|--------------(auaac)----------------aau H.halobium 200 ugc----(---cuu-gc---)-----gcaaugggGAAC|GGCCGGAAUU| H.halobium 250 GA(AGCA)UCUCAGUACGGCCAGGAAGAGAAAUC(GA--AU)GAGA-C|G H.halobium 300 CCGUUAGUAAU(GGCGA)AUGAACGCGGCACAGUCCAaaccgaa------ H.halobium 350 --gcc(-uucg)ggc--------aaugugguguuc---ggacugacuuu- H.halobium 400 -----(-----)-----caucguuu--gaccguuc-guguGAAgucucc- H.halobium 450 (ugaaac)-ggagcgc|g(aua)caGGG(UGACAGC)CCCGUAucac--g H.halobium 500 gaccaguacgacgu----gcgucagcuccaGAGUAGCGGGGGu(---ugg H.halobium 550 aaa)uCCCUCGUGAAUugUGGCAG(GcaucgA-)CUGCCAAGACUAAGUA H.halobium 600 cuc-UCCGAGACCGAUAGUGAAC-AAGUAGU(GUGA)ACGAACGCUGAAA H.halobium 650 AGCACCCC(acaaa)GGGGGGUGAAAUAGGGCUUGAAAUCAGGUGGCGau H.halobium 700 g-gagcgacggggcau--aaaagg------ccucucugggaacgacuuga H.halobium 750 gu(gcaa-)acuca---ugguaggac-cugagaggagccg--auguuccg H.halobium 800 ucGUACGU(UUUGAAA|A)ACGA|GCUAGGGAGUGUGC-CUGUUUGACGA H.halobium 850 GUCUAAccgg(--aguau)ccGGGAAGGCGUAGG(GAAA)CCAauauggc H.halobium 900 cgcggc-----(auu-)-----gcgagggccacCGUGU(ucaa-)GCGCG H.halobium 950 GGGAGUCAAACGGGCACGACCCGAAACCCGGUGAUCUACGCGUGGG|CAA H.halobium 1000 GGUGAAGCAUGGC(GAAA)GCCAUGUGGAGGCCUGuua-ggg-uugg-ug H.halobium 1050 (ucuuuc-aa)cacccu|cccguGaCCUACGUGUAGGGGU(GAAAG)GCC H.halobium 1100 CAUCGAACCGGG-CAACAGCUGGUUCCAACCGAAACAUGU(CGAA)GCAU H.halobium 1150 GAC|CUCUGCcga-|ggu|-agUUCGUG|GGGUAG|AGCGACCGAUUGGG H.halobium 1200 GAguuCA|ACUCC(gaga-)GGAGU-UGuCUCCCCUGUCAAACUCCAAAC H.halobium 1250 C|UACGGAcgccgu-cga|cGCAGGG-AAUCCGGUGUG-C-GGG(G-UAA H.halobium 1300 G)CCUG-UGCACCGUGAGGG(AGACAA)CCCAGAGUUA-GGUUAAGGU|C H.halobium 1350 CCAAAGUGCGAGCUA-AGUGcg-----auuGAAGGUGGUCUCGAGCCCUA H.halobium 1400 GACAGCCGGGAGGUGAGC(UUAGAAGCA)GCUACCCU|C(UAA)G|AAAA H.halobium 1450 GC(GUAACA)GC|UUACCGGCCGAGGUUCGAGGC|GCCCAAAAUGAU-CG H.halobium 1500 GGGCUUAAGUUCGC|C|ACCGAGACC|UAAC|ggcacggg--(uaac--) H.halobium 1550 --accgugauccAGUAGGUUGG|CAUUCUGUU-CGGGUGGAAGCUCGG-G H.halobium 1600 U(GAGA)ACUCGAGUGG|ACCGAGUGGAAAAGAAAAUCCUGGC|CAUAGU H.halobium 1650 AGCagcguuaGUCGGG(UAAGAA-U)CCC-GAU|GGCCGAAA-GAGCAAG H.halobium 1700 GGUUCCUCGGCAAUG-(CUUAU)CA|GCCGAGGGUUAGC|CGA|-uCCUA H.halobium 1750 AGGCCCG-UCG(UAAUU)CGA--gcgggucAAAA-GGGAAACUGG(UUAA H.halobium 1800 UAUU)CCAGU|GC-caccguac----------au(-ugaa)a-------- H.halobium 1850 ------gucgacgccucggagcagcuug|agccgg(-----gc-auucgc H.halobium 1900 ------)ccgguc|-gaaccguc-gaaguuCGUGGAA-G-CC(GUAAU)G H.halobium 1950 G|CAGGAAGCG--aacga---acgucggaa|ca-|---gg(--gaaa)cu H.halobium 2000 -------caaguca-aucug-|gggcccgugaaaaggc-------ga--- H.halobium 2050 ----guacggu--g|U|UCGUACCGAGAUCC(GACACA)GG|UGCUC-UG H.halobium 2100 GC(agaggaa)GCCAA-GGCCu||GUCGGG-AAUAACCGACGUUAGGGAA H.halobium 2150 UUCGGCAAGUUAGUCCCGUAAG(UUCG)CGAUAAGGGAU|GCCUGC---c H.halobium 2200 ac---------(--gcaau)--------gag--GCAGGU|C(GCA)GUGA H.halobium 2250 CUCGGAGGCUC|CGACUGU(CUAAUAACA)ACAUAGGUGACCG|CAAAUC H.halobium 2300 C(GCA-A)GGACGCGUACGGUCACUGAAUCCUGCCCAGU|GCGGGUAUCU H.halobium 2350 GAA----cacccag---(uaca)----augggg----cGAAGGA|CCCGU H.halobium 2400 UAAC|GGC|GGGGGU(AACUAUG)ACCCUC|U(UAA)GGUAGCGUAGUAC H.halobium 2450 CUU|GCCGCU(UC-----AGU)AGCGGC|UUGCAUGAAUGGAUCAACGAG H.halobium 2500 AGCCUCACUGUCCCAACGUUGG-GCCCG|GUGAACUG|-UACGU-UCCAG H.halobium 2550 (-UGCGGA-GU)CUGGAGACCCCCAAGGGGAAGCGAAGACCCUAUAG|AG H.halobium 2600 CUUUACUGC|AGGCUGUCGCU|GGGACACGGUCGCUGAUGUGCAGAGUAG H.halobium 2650 GUAGGAGACguuacacagguaCGUGC(GCUA-)GCACGccaccGAGUCAC H.halobium 2700 ACAUGAAACACUACC|CGUCAGUGACUGUGACCCucac------ucc(-g H.halobium 2750 gga-)gga-----ggacACCGGUAGCCGGGCAGUUUGACUG(GGG)CGGU H.halobium 2800 AC|GCGCUU(GAAAAGAUAUC)GAGCGC|G|C|CCUAAGCCUAUC|UCAG H.halobium 2850 CCGAG(UCAGAGA)CUCGGCGAAGA|GU(G|C-AAGA)GCAUAAGAUAGG H.halobium 2900 CUGACAGUGUCCU(acacaacga-)GGGACGCUGACGC(GAAA)GC-UGG H.halobium 2950 |UCUAGCGAACCAAUUAGG-CUG(--cuugaug)CGG|CCAAUUG-cuga H.halobium 3000 c|aga--aAAGCUACCU|UAGG|GAUAACAG|AGUCGUCACUCGCAAGA( H.halobium 3050 GCACAUA)UCGACCGAGUGGCU-GCUACCUCGAUGUC|GGUU|C|CCUCC H.halobium 3100 |AUCC|UGCCCGU(GCAGAA)GCGGGCAAGGGU|GAGGU(UGUUC)GCCU H.halobium 3150 AUUAAAGGAGGUCGUGAGCUGGGUUUAGACC|GUC(GUGA)GACAGGUCG H.halobium 3200 GCUGCUAUCU|AUUGGGGG-|UGuuuUGGUGCUU|GA|CAGGAA-CGUUC H.halobium 3250 GUA(UAGUAC(GAGA)GGAAC)UACGAAC|GGGUGCCACUGGUGUAUCGG H.halobium 3300 U|UGUCC-(GAGA)-GGGCAuguGCCGAGCA-GCUACGCACCA-CGGGGU H.halobium 3350 AAGAGCU(GAAUGCAUCUA)AGCUCGAAACCCACCUG|GAA-AAGAAGCA H.halobium 3400 CCA|c-|--------------------(-----)---------------- H.halobium 3450 ------ugaga|cc|GCUCG(UAGAAGA)CGAGUUCGAUAG|ACUUG|GG H.halobium 3500 GUGUACGCGUCgag----(gcaa--)----cgaGACGU|UUAGCCC|G|C H.halobium 3550 GAGUACUAacaggucaa--u|gccac---ac------||||| N.magadii 0 |--------------guggcu--acUGUGCCAGCUGGUGGAUC|GCUCGG N.magadii 50 |CUUGAG-|ag|cUGAAGACGGA|CGUG(CCAAGC)U|GCGAUAAGCCUC N.magadii 100 AGG|GACCC(GCACGGA)GGGAAA-GAACUGAGGAUU|UC-CGAAUGGG( N.magadii 150 AAUC-)CCC|--------------(accgc)----------------aau N.magadii 200 ucg----(---uuc-gc---)-----gcaaugggGAAC|GCCGAGAACU| N.magadii 250 GA(AACA)UCUCAGUAUCGGCAGGAAAAGAAAAC(gu-aau)GUGA-U|G N.magadii 300 UCGUUAGUACU(GGCGA)AGGAACGCGAUACAGUCCAaaccgaa------ N.magadii 350 --gcc(-uucg)ggc--------aaugugguguuc---ggacugacgau- N.magadii 400 -----(-----)-----cacucucc--gaaacucg-acacGAAgucucu- N.magadii 450 (uggaac)-agagcac|g(aga)caGGG(UGACAGU)CCCGUAcugu--c N.magadii 500 gacgaguaagagac----gagucagcuccaGAGUAUCGGGGGu(---ugg N.magadii 550 aua)uCCCUCGUGAAU-AUCCCAG(GcaucgA-)CUGGGAAGACUAAACA N.magadii 600 cuc-CUCAAGACCGAUAGCGAAC-AAGUAGU(GUGA)ACGAACGCUGAAA N.magadii 650 AGCACCCC(ACAAA)GGGAGGUGCAAUAGGGCGUGAAAUCAGUUGGCGau N.magadii 700 a-gagcgacagagcau--acaagg------uccgccgaguaacgaccgag N.magadii 750 ac(gcga-)gucuc---uaguaggaa-ucgacggaagccg--auguucug N.magadii 800 ucGUACGU(UUUGAAA|A)ACGA|ACCAGGGAGUGUGC-CUGAUUGACGA N.magadii 850 GUCUAACucg(--agaau)cgaggaAGGCGUAGG(GAAA)CCGacauggc N.magadii 900 cgcaguc----(uuac)----gacgagggccgcCGUGU(ucaa-)GCGCG N.magadii 950 GGGAGUCAAUCGGGCACGACCCGAAACUGGAUGAUCUAGACGUGGG|CAA N.magadii 1000 GGUGAAGCGUGCC(GAAA)GGCACGUGGAGGCCUGuua-gug-uugg-ug N.magadii 1050 (uccuac-aa)uacccu|cacguGACCUACGUCUAGGGGU(GAAAG)GCC N.magadii 1100 CAUCGAAUCCAG-AAACAGCUGGUUCCAACCGAAAGAUGU(CGAA)GCAU N.magadii 1150 CAC|CUCUGCcga-|gau|-agUUCAUG|GGGUAG|AGCGACGGAUUGGG N.magadii 1200 GGaccgc|acucc(gaga-)ggagu-gcgcCCCCCUGUCcaacuccgaac N.magadii 1250 c|UAUGAAcgucguucga|cGCAGGG-AGUCCGGUGCA-C-GGG(G-UAA N.magadii 1300 G)CCUG-UGUACCGUAAGGG(AGACAA)CCCAGAGCUG-GGUUAAGGU|C N.magadii 1350 CCAAAGUGUGGAUUA-AGUGcg-----aucGAAGGUGGUCUCAAGCCCUA N.magadii 1400 GACAGCCGGGAGGUGAGC(UUAGAAGCA)GCUACCCU|C(UAA)G|AAAA N.magadii 1450 GC(GUAACA)GC|UUACCGGCCGAGGUUUGAGGC|GCCCAAAAUGAU-CG N.magadii 1500 GGGCUCAAAUCCAC|C|ACCGAGACC|GAGC|cguacccc--(ugac--) N.magadii 1550 --aggguaaucgCGUAGGUUGG|CGUUCUGUU-CGGGUGGAAGCACGG-A N.magadii 1600 U(GAGA)AUUCGUGUGG|ACCGUUCAGUAACGAAAAUCCUGGU|CAUAGU N.magadii 1650 AGCagcguuaGUCGGG(Uuagac-c)CCC-GAC|GGCCGAAC-GAGUAAG N.magadii 1700 GGUUCCUCAGCAAUG-(CUGAU)CA|GCUGAGGGUUAGC|CGG|-uccUA N.magadii 1750 Agucugc-ccg(UAAGU)cga--agcagacaaca-GGGAAAUAGG(UUAA N.magadii 1800 UAUU)CCUAU|GC-cgguaugc----------aa(-uaaa)a-------- N.magadii 1850 ------guugacgcuuuggggccaccca|ggcugg(-----gc-cuucgc N.magadii 1900 ------)ccaguu|g-aacaguc-gaagagCGUGGAA-G-CC(GUAAU)G N.magadii 1950 G|CACGAAGCG--aucgaauggcug-gaua|---|---ac(--gcaa)gc N.magadii 2000 -------uggguca-accca-|gagcccgugaaaagac-------ga--- N.magadii 2050 ----gcauacu--g|U|CCGUACCGAGAUCC(GACACA)GG|UACUCAUG N.magadii 2100 GC(ggcgaaa)GCCAA-GGUCU||GUCGGG-AGCAACCGACGUUAGGGAA N.magadii 2150 UUCGGCAAGUUAGUCCCGUACG(UUCG)CAAUAAGGGAU|GCCUGC---c N.magadii 2200 uc---------(--ggaaa)--------gag--GCAGGU|C(GCA)GUGA N.magadii 2250 CUCGGGCGCUC|CGACUGU(CUAGUAACA)ACAUAGGUGACCG|CAAAUC N.magadii 2300 C(GCA-A)GGACUCGUACGGUCACUGAAUCCUGCCCAGU|GCGGGUAUCU N.magadii 2350 GAA----caccccu---(uaca)----agggga----cGAAGGA|CCCGU N.magadii 2400 UAAC|GGC|GGGGGU(AACUAUG)ACCCUC|U(UAA)GGUAGCGUAGUAC N.magadii 2450 CUU|GCCGCU(UC-----AGU)AGCGGC|UUGCAUGAAUGGAUCAACGAG N.magadii 2500 AGCGCCACUGUCCCAACGUUGG-GCCCG|GUGAACUG|-UACGU-UCCAG N.magadii 2550 (-UGCGGA-GU)CUGGAGACCCCCAAGGGGAAGCGAAGACCCUAUAG|AG N.magadii 2600 CUUUACUGC|AGGCUGUCACU|GAGACGUGGUCGCCAUUGUGCAGCAUAG N.magadii 2650 GUAGGAGGCauuacacagguaCCCGC(GCUA-)GCGGGccaccGAGCCAG N.magadii 2700 CAUUGAAAUACUACC|CGAUGGUGACUGCGACUCucac------ucc(-u N.magadii 2750 ggc-)gga-----ggacACUGGUAGCCGGGCAGUUUGACUG(GGG)CGGU N.magadii 2800 AC|GCGCCU(GAAAAGAUAUC)GGGCGC|G|C|CCCAAGAUUUCC|UCAC N.magadii 2850 CCGCG(UCGGAGA)CGCGGGAAAGA|GC(G|C-AAGA)GCAUACGGAAGU N.magadii 2900 CUGACAGUGUCCG(gcacaacga-)CGGACGCUGACGC(GAAA)GCGUGG N.magadii 2950 |UCUAGCGAACCAAUUAGG-CUG(--cuugaug)CGG|CCAAUUG-cuga N.magadii 3000 c|aaa--aAAGCUACCU|UAGG|GAUAACAG|AGUCGUCACCCGCAAGA( N.magadii 3050 GCACAUA)UCGACCGGGUGGCUUGCUACCUCGAUGUC|GGUU|C|CCUCC N.magadii 3100 |AUCC|UGCCCGU(GCAGAA)GCGGGCAAGGGU|GAGGU(UGUUC)GCCU N.magadii 3150 AUUAAAGGAGGUCGUGAGCUGGGUUUAGACC|GUC(GUGA)GACAGGUCG N.magadii 3200 GCUGCUAUCU|AUUGGGGG-|UGuuAUGGUUCCU|GA|CGGGAA-CGUUC N.magadii 3250 GUA(UAGUAC(GAGA)GGAAC)UACGAAU|GGGUGCCACUGGUGUACCGG N.magadii 3300 C|UGUUC-(GAAA)-GAGCAcguGCCGGGCA-GCCACGCACCA-CGGGGU N.magadii 3350 AAGAGCU(GAACGCAUCUA)AGCUCGAAACCCACCUG|GAA-AAGAGGAG N.magadii 3400 CCA|c-|--------------------(-----)---------------- N.magadii 3450 ------cgagg|cc|ACUCG(UAGAAGA)CGAGAUCGAUAG|ACUCG|GG N.magadii 3500 GUGUACGCGCCaag----(gcaa--)----cgaGGCGU|UGAGCCC|G|C N.magadii 3550 GAGCACUAaucggcca----|agccacac--------||||| H.morrhuae 0 |----------------ggcu--acUAUGCCAACUGGUGAAUA|GCUCGG H.morrhuae 50 |CUCGAG-|ug|cCGAUGAAGGA|CGUG(CCAAGC)U|GCGAUAAGCUCA H.morrhuae 100 GGG|gaGCC(GCACGGA)GGCgaa-GAACCUGAGAUU|UC-CGAAUGGG( H.morrhuae 150 AAUC-)CCC|--------------(accgc)----------------aau H.morrhuae 200 ugc----(---cuucgc---)-----gcaaugggGAAC|GCCGGGAACU| H.morrhuae 250 GA(AACA)UCUCAGUACCGGCAGGAAGAGAAACC(GA--AU)GGGA-U|G H.morrhuae 300 UCGUUACUAAC(GGCGA)GUGAACGCGACACAGUCCAaaccgaagcuuac H.morrhuae 350 ggggc(-uuu-)gccccacgagcaaugugguguuc---ggacugacucu- H.morrhuae 400 -----(-----)-----cagcaccg--gaucgucugugu-GAAgucucc- H.morrhuae 450 (uggaac)-ggagcgu|g(aga)caGGG(UGAAAAC)CCCGUA-acac-a H.morrhuae 500 gaccaguacggugu----gcgucagcuccaGAGUAUCGGGGGu(---ugg H.morrhuae 550 aua)uCCCUCGUGAAU-AUGGCCG(GcaucgA-)CGGCCAAGACUAAaca H.morrhuae 600 cau-CUCGAGACCGAUAGUGAAC-AAGUAGC(GUGA)CGGAACGCUGAAA H.morrhuae 650 AGCACCCC(ACAAA)GGGAGGUGCAAUAGGGCUUGAACUCAGUUGGCGau H.morrhuae 700 c-gagcgacggggcau--aaaagg------cgucuuagugaacgacccgg H.morrhuae 750 gg(gcga-)ccccg---caguagcaa-ccgagacgagccg--auguuccg H.morrhuae 800 ucGUGCGU(UUUGAAA|A)ACGA|GCCAGGGAGUGUGU-CUGCUUGACGA H.morrhuae 850 GUCUAA-CCg(--agcau)cggggaAGGCAUAGG(GAAA)CCGacauggc H.morrhuae 900 cgcagugcgu-(ucu-)-acguaccagggccgcCGUGU(ucaa-)GCGCG H.morrhuae 950 GGGAGUCGAGCGGACACGACCCGAAUCCGGACGAUCUACACGAUGG|CAA H.morrhuae 1000 GGUGAAGCGUGGC(GAAA)GCUGCGUGGAGGCCUGuua-ggg-augg-ug H.morrhuae 1050 (uccuac-aa)uacccu|cccguGACCAGUGUGUAGGGGU(GAAAG)GCC H.morrhuae 1100 CAUCGAGUCCGG-CAACAGCUGGUUCCGACCGAAACAUGU(CGAA)GCAU H.morrhuae 1150 GAC|CUCCGCcga-|ggu|-agUUCGUG|GGGUAG|AGCGACCGAUUGGA H.morrhuae 1200 GGgacCG|ACUCC(gaga-)GGAGU-CGGCCCUCCUGUCGAACUCCGAAC H.morrhuae 1250 C|UACGAAcgccgu-cga|cgcgggg-AGAGCGGUGUG-C-GGG(G-UAA H.morrhuae 1300 G)CCUG-UGCACCAUGAGGG(AGACAA)CCCAGAGCUU-GGUUGAGGU|C H.morrhuae 1350 CCCAAGUGUGGACUA-AGUGcg-----aucGAAGGUGGUUCCGAGCCAUA H.morrhuae 1400 GACAGCCGGGAGGUGAGC(UUAGAAGCA)GCUACCCG|C(UAA)G|AAAA H.morrhuae 1450 GC(GUAACA)GC|UUACCGGCCGAGGUUUGGAGC|GCCGAAAAUGAU-CG H.morrhuae 1500 GGGCUCAAGUCCAC|C|ACCGAUACC|UAGC|ggcgcacu--(guau--) H.morrhuae 1550 --agugc-auccAGUAGGUCGG|CGCUCCGUU-UGGGUGGAAGUACGG-G H.morrhuae 1600 C(GAGA)GUUCGUAUGG|ACCGAACGGUGACGAUAAUCCUGGC|CACAGU H.morrhuae 1650 AGCagcgguaGUCGGG(Uuagaaau)CCC-GAC|GGCCUCAC-GGACAAG H.morrhuae 1700 GGUUCCUCGGCAAUG-(UUCGU)CA|ACCGAGGGUUAGC|CGG|-uccuc H.morrhuae 1750 agucuua-cCG(CAGUU)CGa--guaagacGAaucGGGAAACUGG(UUAA H.morrhuae 1800 UAUU)CCAGU|GC-ccgcgugc-----------a(-auca)u-------- H.morrhuae 1850 ------gccgacgccucggggucgaccg|agccgg(-----gc-acucgc H.morrhuae 1900 ------)ccgguc|gaaucacca-aaacuuCGUGGAA-G-CC(GUAAC)G H.morrhuae 1950 G|CACGAAGCG--ggcga-acggugagaua|---|---ga(--gaaa)uu H.morrhuae 2000 -------cggucca-accug-|gggcccgugaaaaggc------------ H.morrhuae 2050 ----gcacgcg--g|U|CCGUACCCAGAUCC(GACACA)GG|UGUCCgUG H.morrhuae 2100 GC(ggcgaaa)GCCAA-GGCCU||GUCGGG-GAGAACCGACGUUAGGGAA H.morrhuae 2150 UUCGGCAAGUUAGUCCCGUACG(UUCG)CAAUAAGGGAU|GCCUGC---c H.morrhuae 2200 uc---------(--ggaau)--------gag--GCAGGU|C(GCA)GCGA H.morrhuae 2250 CUCGGACGCUC|CAACUGU(CUAAUAACA)ACACAGGUGACCG|CAAAUC H.morrhuae 2300 C(GCA-A)GGACUCGUACGGUCACUGAAUCCUGCCCAGU|GCGGGUAUCU H.morrhuae 2350 GAA----cacccgg---(uaca)----acggga----cGAAGGA|CCCGU H.morrhuae 2400 CAAC|GGC|GGGGGU(AACUAUG)ACCCUC|U(UAA)GGUAGCGUAGUAC H.morrhuae 2450 CUU|GCCGCU(UC-----AGU)AGCGGC|UCGCAUGAAUGGAUGAAUGAG H.morrhuae 2500 AGCGUCACUGUCCCAACGUUGG-GCCCG|GUGAACUG|-UACGU-UCCAG H.morrhuae 2550 (-UGCGGA-GU)CUGGAGACCCCCAAGGGGAAGCGAAGACCCUAUAG|AG H.morrhuae 2600 CUUUACUGC|AAGCUGUCGCU|GGGACACGGUCGCUAGUGUGCAGGAUAG H.morrhuae 2650 GUAGGAGUCGucacgcaggcaCCCGC(GCUA-)GCGGGccgccGAGACAC H.morrhuae 2700 CACUGAAAUACUACC|CACUAGUGACUGUGACCCuuac------ucc(-g H.morrhuae 2750 gga-)gga-----ggacACCGGUAGCUGGGCAGUUUGACUG(GGG)CGGU H.morrhuae 2800 AC|GGGCUU(GAAAAGAUAUC)GAGCCC|G|C|CCGAAGAUCACC|UCAU H.morrhuae 2850 CCGGG(UCGGAGA)CCCGGAAUAGA|GC(G|C-AAGA)GCAAAAGGUGGU H.morrhuae 2900 CUGACAGUGUUCU(cuccaacacg)AGAACGCUGACGC(GAAA)GCGCGG H.morrhuae 2950 |UCUAGCGAACGGAUGAGC-CUG(--cuugaug)CGG|GCCAUUU-acga H.morrhuae 3000 c|aga--aAAGCUACCU|UAGG|GAUAACAG|AGUCGUCACCCGCAAGA( H.morrhuae 3050 GCACAUA)UCGACCGGGUGGCUUGCUACCUCGAUGUC|GGUU|C|CCUCC H.morrhuae 3100 |AUCC|UGCCCGU(GCAGCA)GCGGGCAAGGGU|GAGGU(UGUUC)GCCU H.morrhuae 3150 AUUAAAGGAGGUCGUGAGCUGGGUUUAGACC|GUC(GUGA)GACAGGUCG H.morrhuae 3200 GCUGCUAUCU|AUUGGGGG-|UGucAUGGUACCU|GA|CGGGAA-CGAUC H.morrhuae 3250 GUA(UAGUAC(GAGA)GGAAC)UACGAUU|GGUCGCCACUGGUGUACCGG H.morrhuae 3300 U|UGUCC-(GAGA)-GGGCAcguGCCGGGCA-GCCACGCGACA-CGGGGU H.morrhuae 3350 AAGAGCU(GAACGCAUCUA)AGCUCGAAACCCACCCG|GAA-AAGAGGUA H.morrhuae 3400 CCg|c-|--------------------(-----)---------------- H.morrhuae 3450 ------cgagg|uc|ACUCG(UAGAAGA)CGAGUUCGAUAG|ACUCG|GG H.morrhuae 3500 GUGUACGCGCCgag----(gcaa--)----cgaGGCGU|UUAGCCC|G|C H.morrhuae 3550 GAGCACUAacagaccg----|agcc----acau----||||| H.marism.1 0 |gagucacaacgacguuggcu--acUAUGCCAGCUGGUGGAUU|GCUCGG H.marism.1 50 |CUCAGG-|cg|cUGAUGAAGGA|CGUG(CCAAGC)U|GCGAUAAGCCAU H.marism.1 100 GGG|GAGCC(GCACGGA)GGCGAA-GAACCAUGGAUU|UC-CGAAUGAG( H.marism.1 150 aaucu)CUC|--------------(uaac-)----------------aau H.marism.1 200 ugc----(---uuc-gc---)-----gcaaugagGAAC|CCCGAGAACU| H.marism.1 250 GA(AACA)UCUCAGUAUCGGGAGGAACAGAAAAC(GC-aau)GUGA-U|G H.marism.1 300 UCGUCAGUAAC(CGCGA)GUGAACGCGAUACAGCCCAaaccgaa------ H.marism.1 350 -gccc(-ucac)gggc-------aaugugguguca--gggc-uaccucu- H.marism.1 400 -----(-----)-----caucgucc--gaccaucu-cgacGAAgucucu- H.marism.1 450 (uggaac)-agagcGU|g(aua)caGGG(UGACAAC)CCCGUAcucg--a H.marism.1 500 gaccaguacgacgu----gcgguagugccaGAGUAGCGGGGGu(---ugg H.marism.1 550 aua)uCCCUCGCGAAU-AACGCAG(gcaucgA-)CUGCGAAGGCUAAACA H.marism.1 600 caa-CCUGAGACCGAUAGUGAAC-AAGUAGU(GUGA)ACGAACGCUGCAA H.marism.1 650 AGUACCCU(CAGAA)GGGAGGCGAAAUAGAGCAUGAAAUCAGUUGGCGau H.marism.1 700 c-gagcgacagggcau--acaagg------ucccuugacgaaugaccgag H.marism.1 750 ac(gcga-)gucuc---caguaagac-ucacgggaagccg--auguucug H.marism.1 800 ucGUACGU(UUUGAAA|A)ACGA|GCCAGGGAGUGUGU-CUGUAUGGCAA H.marism.1 850 GUCUAACCgg(--aguau)ccgg-GAGGCACAGG(GAAA)CCGacauggc H.marism.1 900 cgcagggc---(uuu-)---gcccgagggccgcCGUCU(ucaa-)GGGCG H.marism.1 950 GGGAGCCAUGUGGACACGACCCGAAUCCGGACGAUCUACGCAUGGA|CAA H.marism.1 1000 GAUGAAGCGUGCC(GAAA)GGCACGUGGAAGUCUguua-gag-uugg-ug H.marism.1 1050 (uccuac-aa)uacccu|cucguGAUCUAUGUGUAGGGGU(GAAAG)GCC H.marism.1 1100 CAUCGAGUCCGG-CAACAGCUGGUUCCAAUCGAAACAUGU(CGAA)GCAU H.marism.1 1150 GAC|CUCCGCCga-|ggu|-aGUCUGUG|AGGUAG|AGCGACCGAUUGGU H.marism.1 1200 GUgucCG|CCUCC(gaga-)GGAGU-CGGCACACCUGUCAAACUCCAAAC H.marism.1 1250 U|UACAGAcgccguuuga|cGCGGGG-AUUCCGGUGCG-C-GGG(G-UAA H.marism.1 1300 G)CCUG-UGUACCAGGAGGG(GAACAA)CCCAGAGAUA-GGUUAAGGU|C H.marism.1 1350 CCCAAGUGUGGAUUA-AGUGua-auccucuGAAGGUGGUCUCGAGCCCUA H.marism.1 1400 GACAGCCGGGAGGUGAGC(UUAGAAGCA)GCUACCCU|C(UAA)G|AAAA H.marism.1 1450 GC(GUAACA)GC|UUACCGGCCGAGGUUUGAGGC|GCCCAAAAUGAU-CG H.marism.1 1500 GGACUCAAAUCCAC|C|ACCGAGACC|UGUC|cguaccgc--(ucau--) H.marism.1 1550 --augguaaucgAGUAGAUUGC|CGCUCUAAU-UGGAUGGAAGUAGGG-G H.marism.1 1600 U(GAGA)GCUCCUAUGG|ACCGAUUAGUGACGAAAAUCCUGGC|CAUAGU H.marism.1 1650 AGCagcgauaGUCGGG(Ugag-a-A)CCCcGAC|GGCCUAAU-GGAUAAG H.marism.1 1700 GGUUCCUCAGCACUG-(CUGAU)CA|GCUGAGGGUUAGC|CGG|-uCCUA H.marism.1 1750 AGUCAUA-CCG(CAACU)CGA--cuaugacGAAAuGGGAAACGGG(UUAA H.marism.1 1800 UAUU)CCCGU|GC-cacuaugc----------ag(-ugaa)a-------- H.marism.1 1850 ------guugacgcccuggggucgauca|cgcugg(-----gc-auucgc H.marism.1 1900 ------)ccaguc|g-aaccguc-caacucCGUGGAA-G-CC(GUAAU)G H.marism.1 1950 G|CAGGAAGCG--gacga---acggcggca|ua-|---gg(--gaaa)cg H.marism.1 2000 -------ugauuc--accug-|gggcccaugaaaagac-------ga--- H.marism.1 2050 ----gcauagu--g|U|CCGUACCGAGAACC(GACACA)GG|UGUCCAUG H.marism.1 2100 GC(ggcgaaa)GCCAA-GGCCU||GUCGGG-AGCAACCAACGUUAGGGAA H.marism.1 2150 UUCGGCAAGUUAGUCCCGUACC(UUCG)GAAGAAGGGAU|GCCUGC---u H.marism.1 2200 cc---------(--ggaac)--------gga--GCAGGU|C(GCA)GUGA H.marism.1 2250 CUCGGAAGCUC|GGACUGU(CUAGUAAUA)ACAUAGGUGACCG|CAAAUC H.marism.1 2300 C(GCA-A)GGACUCGUACGGUCACUGAAUCCUGCCCAGU|GCAGGUAUCU H.marism.1 2350 GAA----caccucg---(uaca)----agagga----cGAAGGA|CCUGU H.marism.1 2400 CAAC|GGC|GGGGGU(AACUAUG)ACCCUC|U(UAA)GGUAGCGUAGUAC H.marism.1 2450 CUU|GCCGCA(UC-----AGU)AGCGGC|UUGCAUGAAUGGAUUAACCAG H.marism.1 2500 AGCUUCACUGUCCCAACGUUGG-GCCCG|GUGAACUG|-UACAU-UCCAG H.marism.1 2550 (-UGCGGA-GU)CUGGAGACACCCAGGGGGAAGCGAAGACCCUAUGG|AG H.marism.1 2600 CUUUACUGC|AGGCUGUCGCU|GAGACGUGGUCGCCGAUGUGCAGCAUAG H.marism.1 2650 GUAGGAGUCGuuacagagguaCCCGC(GCUA-)GCGGGccacccAGACAA H.marism.1 2700 CAGUGAAAUACUACC|CGUCGGUGACUGCGACUCucac------ucc(-g H.marism.1 2750 gga-)gga-----ggacACCGAUAGCCGGGCAGUUUGACUG(GGG)CGGU H.marism.1 2800 AC|GCGCUC(GAAAAGAUAUC)GAGCGC|G|C|CCUAUGGUCAUC|UCAG H.marism.1 2850 CCGGG(ACAGAGA)CCCGGCGAAGA|GU(G|C-AAGA)GCAAAAGAUGAC H.marism.1 2900 UUGACAGUGUUCU(ucccaacga-)GGAACGCUGACGC(GAAA)G-GUGG H.marism.1 2950 |UCUAGCGAACCAAUUAGC-CUG(--cuugaug)CGG|GCAAUUG-auga H.marism.1 3000 c|aga--aAAGCUACCC|UAGG|GAUAACAG|AGUCGUCACUCGCAAGA( H.marism.1 3050 GCACAUA)UCGACCGAGUGGCUUGCUACCUCGAUGUC|GGUU|C|CCUCC H.marism.1 3100 |AUCC|UGCCCGU(GCAGAA)GCGGGCAAGGGU|GAGGU(UGUUC)GCCU H.marism.1 3150 AUUAAAGGAGGUCGUGAGCUGGGUUUAGACC|GUC(GUGA)GACAGGUCG H.marism.1 3200 GCUGCUAUCU|ACUGGGUG-|UGuaAUGGUGUCU|GA|CAAGAA-CGACC H.marism.1 3250 GUA(UAGUAC(GAGA)GGAAC)UACGGUU|GGUGGCCACUGGUGUACCGG H.marism.1 3300 U|UGUUC-(GAGA)-GAGCAcguGCCGGGUA-GCCACGCCACA-CGGGGU H.marism.1 3350 AAGAGCU(GAACGCAUCUA)AGCUCGAAACCCACUUG|GAA-AAGAGACA H.marism.1 3400 CCG|c-|--------------------(-----)---------------- H.marism.1 3450 ------cgagg|uc|CCGCG(UACAAGA)CGCGGUCGAUAG|ACUCG|GG H.marism.1 3500 GUGUGCGCGUCgag----(guaa--)----cgaGACGU|UAAGCCC|A|C H.marism.1 3550 GAGCACUAacagaccaa---|agccaucauucauacg||||| H.marism.2 0 |--------------uuggcu--acUAUGCCAGCUGGUGGAUU|GCUCGG H.marism.2 50 |CUCAGG-|cg|cUGAUGAAGGA|CGUG(CCAAGC)U|GCGAUAAGCUGU H.marism.2 100 GGG|GAGCC(GCACGGA)GGCGAA-GAACCACAGAUU|UC-CGAAUGAG( H.marism.2 150 aaucu)CUC|--------------(uaac-)----------------aau H.marism.2 200 ugc----(---uuc-gc---)-----gcaaugagGAAC|CCCGAGAACU| H.marism.2 250 GA(AACA)UCUCAGUAUCGGGAGGAACAGAAAAC(GC-aac)GUGA-U|G H.marism.2 300 UCGUUAGUAAC(CGCGA)GUGAACGCGAUACAGCCCAaaccgaa------ H.marism.2 350 -gccu(-gcac)gggc-------aaugugguguca--gggc-uaccucu- H.marism.2 400 -----(-----)-----caucagcc--gaccgucu-ucacGAAgucucu- H.marism.2 450 (uggaau)-agagcGU|g(aua)caGGG(UGACAAC)CCCGUAcuga--a H.marism.2 500 gaccaguacgcugu----gcgguagugccaGAGUAGCGGGGGu(---ugg H.marism.2 550 aua)uCCCUCGCGAAU-AACGCAG(gcaucgA-)CUGCGAAGGCUAAACA H.marism.2 600 caa-CCUGAGACCGAUAGUGAAC-AAGUAGU(GUGA)ACGAACGCUGCAA H.marism.2 650 AGUACCCU(CAGAA)GGGAGGCGAAAUAGAGCAUGAAAUCAGUUGGCGau H.marism.2 700 c-gagcgacagggcau--acaagg------ucccuugacgaaugaccgag H.marism.2 750 ac(gcga-)gucuc---caguaagac-ucacgggaagccg--auguucug H.marism.2 800 ucGUACGU(UUUGAAA|A)ACGA|GCCAGGGAGUGUGU-CUGUAUGGCAA H.marism.2 850 GUCUAACCgg(--aguau)ccgg-GAGGCACAGG(GAAA)CCGacauggc H.marism.2 900 cgcagggc---(uuu-)---gcccgagggccgcCGUCU(ucaa-)GGGCG H.marism.2 950 GGGAGCCAUGUGGACACGACCCGAAUCCGGACGAUCUACGCAUGGA|CAA H.marism.2 1000 GAUGAAGCGUGCC(GAAA)GGCACGUGGAAGUCUguua-gag-uugg-ug H.marism.2 1050 (uccuac-aa)uacccu|cucguGAUCUAUGUGUAGGGGU(GAAAG)GCC H.marism.2 1100 CAUCGAGUCCGG-CAACAGCUGGUUCCAAUCGAAACAUGU(CGAA)GCAU H.marism.2 1150 GAC|CUCCGCCga-|ggu|-aGUCUGUG|AGGUAG|AGCGACCGAUUGGU H.marism.2 1200 GUgucCG|CCUCC(ggga-)GGAGU-CGGCACACCUGUCAAACUCCAAAC H.marism.2 1250 U|UACAGAcgcuguuuga|cGCGGGG-AUUCCGGUGCG-C-GGG(G-UAA H.marism.2 1300 G)CCUG-UGUACCAGGAGGG(GAACAA)CCCAGAGAUA-GGUUAAGGU|C H.marism.2 1350 CCCAAGUGUGGAUUA-AGUGua-auccucuGAAGGUGGUCUCGAGCCCUA H.marism.2 1400 GACAGCCGGGAGGUCAGC(UUAGAAGCA)GCUACCCU|C(UAA)G|AAAA H.marism.2 1450 GC(GUAACA)GC|UUACCGGCCGAGGUUUGAGGC|GCCCAAAAUGAU-CG H.marism.2 1500 GGACUCAAAUCCAC|C|ACCGAGACC|UGUC|cguaccgc--(ucau--) H.marism.2 1550 --augguaaucgAGUAGAUUGC|CGCUCUAAU-UGGAUGGAAGUAGGG-G H.marism.2 1600 C(GAGA)GCUCCUAUGG|ACCGAUUAGUGACGAAAAUCCUGGC|CAUAGU H.marism.2 1650 AGCagcgauaGUCGGG(Ugag-a-A)CCCcGAC|GGCCUAAU-GGAUAAG H.marism.2 1700 GGUUCCUCAGCACUG-(CUGAU)CA|GCUGAGGGUUAGC|CGG|-uCCUA H.marism.2 1750 AGUCUCA-CCG(CAACU)CGA--cuaugacGAAAuGGGAAACAGG(UUAA H.marism.2 1800 UAUU)CCUGU|GC-caucaugc----------ag(-ugaa)a-------- H.marism.2 1850 ------guugacacccuggggucgauca|cgcccg(-----gc-auucgc H.marism.2 1900 ------)ccgguc|g-aaccguc-caacucCGUGGAA-G-CC(GUAAU)G H.marism.2 1950 G|CAGGAAGCG--gacga---acggcggca|ua-|---gg(--gaaa)cg H.marism.2 2000 -------ugauuc--accug-|gggcccaugaaaagac-------ga--- H.marism.2 2050 ----gcauagu--g|U|CCGUACCGAGAACC(GACACA)GG|UGUCCAUG H.marism.2 2100 GC(ggcgaaa)GCCAA-GGCCU||GUCGGG-AGCAACCAACGUUAGGGAA H.marism.2 2150 UUCGGCAAGUUAGUCCCGUAGG(UUCG)GAAGAAGGGAU|GCCUGC---u H.marism.2 2200 cc---------(--ggaac)--------gga--GCAGGU|C(GCA)GUGA H.marism.2 2250 CUCGGAAGCUC|GGACUGU(CUAGUAAUA)ACAUAGGUGACCG|CAAAUC H.marism.2 2300 C(GCA-A)GGACUCGUACGGUCACUGAAUCCUGCCCAGU|GCAGGUAUCU H.marism.2 2350 GAA----caccucg---(uaca)----agagga----cGAAGGA|CCUGU H.marism.2 2400 CAAC|GGC|GGGGGU(AACUAUG)ACCCUC|U(UAA)GGUAGCGUAGUAC H.marism.2 2450 CUU|GCCGCA(UC-----AGU)AGCGGC|UUGCAUGAAUGGAUUAACCAG H.marism.2 2500 AGCUUCACUGUCCCAACGUUGG-GCCCG|GUGAACUG|-UACAU-UCCAG H.marism.2 2550 (-UGCGGA-GU)CUGGAGACACCCAGGGGGAAGCGAAGACCCUAUGG|AG H.marism.2 2600 CUUUACUGC|AGGCUGUCGCU|GAGACGUGGUCGCCGAUGUGCAGCAUAG H.marism.2 2650 GUAGGAGUCGuuacagagguaCCCGC(GCUA-)GCGGGccacccAGACAA H.marism.2 2700 CAGUGAAAUACUACC|CGUCGGUGACUGCGACUCucac------ucc(-g H.marism.2 2750 gga-)gga-----ggacACCGAUAGCCGGGCAGUUUGACUG(GGG)CGGU H.marism.2 2800 AC|GCGCUC(GAAAAGAUAUC)GAGCGC|G|C|CCUAUGGUGAUC|UCAG H.marism.2 2850 CCGGG(ACAGAGA)CCCGGCGAAGA|GU(G|C-AAGA)GCAAAAGAUGAC H.marism.2 2900 UUGACAGUGUUCU(ucccaacga-)GGAACGCUGACGC(GAAA)G-GUGG H.marism.2 2950 |UCUAGCGAACCAAUUAGC-CUG(--cuugaug)CGG|GCAAUUG-auga H.marism.2 3000 c|aga--aAAGCUACCC|UAGG|GAUAACAG|AGUCGUCACUCGCAAGA( H.marism.2 3050 GCACAUA)UCGACCGAGUGGCUUGCUACCUCGAUGAC|GGUU|C|CCUCC H.marism.2 3100 |AUCC|U-CCCGU(GCAGAA)GCGGGCAAGGGU|GAGGU(UGUUC)GCCU H.marism.2 3150 AUUAAAGGAGGUCGUGAGCUGGGUUUAGACC|GUC(GUGA)GACAGGUCG H.marism.2 3200 GCUGCUAUCU|ACUGGGUG-|UGuaAUGGUGUCU|GA|CAAGAA-CGACC H.marism.2 3250 GUA(UAGUAC(GAGA)GGAAC)UACGGUU|GGUGGCCACUGGUGUACCGG H.marism.2 3300 U|UGUUC-(GAGA)-GAGCAcguGCCGGGUA-GCCACGCCACA-CGGGGU H.marism.2 3350 AAGAGCU(GAACGCAUCUA)AGCUCGAAACCCACUUG|GAA-AAGAGACA H.marism.2 3400 CCG|c-|--------------------(-----)---------------- H.marism.2 3450 ------cgagg|uc|CCGCG(UACAAGA)CGCGGUCGAUAG|ACUCG|GG H.marism.2 3500 GUGUGCGCGUCgag----(guaa--)----cgaGACGU|UAAGCCC|A|C H.marism.2 3550 GAGCACUAacagaccaa---|agccaucau-------||||| H.marism.3 0 |--------------uuggcu--acUAUGCCAGCUGGUGGAUU|GCUCGG H.marism.3 50 |CUCAGG-|cg|cUGAUGAAGGA|CGUG(CCAAGC)U|GCGAUAAGCCAU H.marism.3 100 GGG|GAGCC(GCACGGA)GGCGAA-GAACCAUGGAUU|UC-CGAAUGAG( H.marism.3 150 aaucu)CUC|--------------(uaac-)----------------aau H.marism.3 200 ugc----(---uuc-gc---)-----gcaaugagGAAC|CCCGAGAACU| H.marism.3 250 GA(AACA)UCUCAGUAUCGGGAGGAACAGAAAAC(GC-aau)GUGA-U|G H.marism.3 300 UCGUCAGUAAC(CGCGA)GUGAACGCGAUACAGCCCAaaccgaa------ H.marism.3 350 -gccc(-ucac)gggc-------aaugugguguca--gggc-uaccucu- H.marism.3 400 -----(-----)-----caucagcc--gaccgucu-cgacGAAgucucu- H.marism.3 450 (uggaac)-agagcGU|g(aua)caGGG(UGACAAC)CCCGUAcucg--a H.marism.3 500 gaccaguacgacgu----gcgguagugccaGAGUAGCGGGGGu(---ugg H.marism.3 550 aua)uCCCUCGCGAAU-AACGCAG(gcaucgA-)CUGCGAAGGCUAAACA H.marism.3 600 caa-CCUGAGACCGAUAGUGAAC-AAGUAGU(GUGA)ACGAACGCUGCAA H.marism.3 650 AGUACCCU(CAGAA)GGGAGGCGAAAUAGAGCAUGAAAUCAGUUGGCGau H.marism.3 700 c-gagcgacagggcau--acaagg------ucccuugacgaaugaccgag H.marism.3 750 ac(gcga-)gucuc---caguaagac-ucacgggaagccg--auguucug H.marism.3 800 ucGUACGU(UUUGAAA|A)ACGA|GCCAGGGAGUGUGU-CUGUAUGGCAA H.marism.3 850 GUCUAACCgg(--aguau)ccgg-GAGGCACAGG(GAAA)CCGacauggc H.marism.3 900 cgcagggc---(uuu-)---gcccgagggccgcCGUCU(ucaa-)GGGCG H.marism.3 950 GGGAGCCAUGUGGACACGACCCGAAUCCGGACGAUCUACGCAUGGA|CAA H.marism.3 1000 GAUGAAGCGUGCC(GAAA)GGCACGUGGAAGUCUguua-gag-uugg-ug H.marism.3 1050 (uccuac-aa)uacccu|cucguGAUCUAUGUGUAGGGGU(GAAAG)GCC H.marism.3 1100 CAUCGAGUCCGG-CAACAGCUGGUUCCAAUCGAAACAUGU(CGAA)GCAU H.marism.3 1150 GAC|CUCCGCCga-|ggu|-aGUCUGUG|AGGUAG|AGCGACCGAUUGGU H.marism.3 1200 GUgucCG|CCUCC(ggga-)GGAGU-CGGCACACCUGUCAAACUCCAAAC H.marism.3 1250 U|UACAGAcgcuguuuga|cGCGGGG-AUUCCGGUGCG-C-GGG(G-UAA H.marism.3 1300 G)CCUG-UGUACCAGGAGGG(GAACAA)CCCAGAGAUA-GGUUAAGGU|C H.marism.3 1350 CCCAAGUGUGGAUUA-AGUGua-auccucuGAAGGUGGUCUCGAGCCCUA H.marism.3 1400 GACAGCCGGGAGGUCAGC(UUAGAAGCA)GCUACCCU|C(UAA)G|AAAA H.marism.3 1450 GC(GUAACA)GC|UUACCGGCCGAGGUUUGAGGC|GCCCAAAAUGAU-CG H.marism.3 1500 GGACUCAAAUCCAC|C|ACCGAGACC|UGUC|cguaccgc--(ucau--) H.marism.3 1550 --augguaaucgAGUAGAUUGC|CGCUCUAAU-UGGAUGGAAGUAGGG-G H.marism.3 1600 U(GAAA)ACUCCUGUGG|ACCGAUUAGUGACGAAAAUCCUGGC|CAUAGU H.marism.3 1650 AGCagcgauaGUCGGG(Ugag-a-A)CCCcGAC|GGCCUAAU-GGAUAAG H.marism.3 1700 GGUUCCUCAGCACUG-(CUGAU)CA|GCUGAGGGUUAGC|CGG|-uCCUA H.marism.3 1750 AGUCAUA-CCG(CAACU)CGA--cuauaucGAAAuUGGAAACGGG(UUAA H.marism.3 1800 UAUU)CCCGU|GC-cacuaugc----------ag(-ugaa)a-------- H.marism.3 1850 ------guugacgcccuggggucgauca|cgcugg(-----gc-auucgc H.marism.3 1900 ------)ccaguc|g-aaccguc-caacucCGUGGAA-G-CC(GUAAU)G H.marism.3 1950 G|CAGGAAGCG--gacga---acggcggca|ua-|---gg(--gaaa)cg H.marism.3 2000 -------ugauuc--accug-|gggcccaugaaaagac-------ga--- H.marism.3 2050 ----gcauagu--g|U|CCGUACCGAGAACC(GACACA)GG|UGUCCAUG H.marism.3 2100 GC(ggcgaaa)GCCAA-GGCCU||GUCGGG-AGCAACCAACGUUAGGGAA H.marism.3 2150 UUCGGCAAGUUAGUCCCGUACC(UUCG)GAAGAAGGGAU|GCCUGC---u H.marism.3 2200 cc---------(--ggaac)--------gga--GCAGGU|C(GCA)GUGA H.marism.3 2250 CUCGGAAGCUC|GGACUGU(CUAGUAAUA)ACAUAGGUGACCG|CAAAUC H.marism.3 2300 C(GCA-A)GGACUCGUACGGUCACUGAAUCCUGCCCAGU|GCAGGUAUCU H.marism.3 2350 GAA----caccucg---(uaca)----agagga----cGAAGGA|CCUGU H.marism.3 2400 CAAC|GGC|GGGGGU(AACUAUG)ACCCUC|U(UAA)GGUAGCGUAGUAC H.marism.3 2450 CUU|GCCGCA(UC-----AGU)AGCGGC|UUGCAUGAAUGGAUUAACCAG H.marism.3 2500 AGCUUCACUGUCCCAACGUUGG-GCCCG|GUGAACUG|-UACAU-UCCAG H.marism.3 2550 (-UGCGGA-GU)CUGGAGACACCCAGGGGGAAGCGAAGACCCUAUGG|AG H.marism.3 2600 CUUUACUGC|AGGCUGUCGCU|GAGACGUGGUCGCCGAUGUGCAGCAUAG H.marism.3 2650 GUAGGAGUCGuuacagagguaCCCGC(GCUA-)GCGGGccacccAGACAA H.marism.3 2700 CAGUGAAAUACUACC|CGUCGGUGACUGCGACUCucac------ucc(-g H.marism.3 2750 gga-)gga-----ggacACCGAUAGCCGGGCAGUUUGACUG(GGG)CGGU H.marism.3 2800 AC|GCGCUC(GAAAAGAUAUC)GAGCGC|G|C|CCUAUGGUCAUC|UCAG H.marism.3 2850 CCGGG(ACAGAGA)CCCGGCGAAGA|GU(G|C-AAGA)GCAAAAGAUGAC H.marism.3 2900 UUGACAGUGUUCU(ucccaacga-)GGAACGCUGACGC(GAAA)GC-CGG H.marism.3 2950 |UCUAGCGAACCAAUUAGC-CUG(--cuugaug)CGG|GCAAUUG-auga H.marism.3 3000 c|aga--aAAGCUACCC|UAGG|GAUAACAG|AGUCGUCACUCGCAAGA( H.marism.3 3050 GCACAUA)UCGACCGAGUGGCUUGCUACCUCGAUGAC|GGUU|C|CCUCC H.marism.3 3100 |AUCC|U-CCCGU(GCAGAA)GCGGGCAAGGGU|GAGGU(UGUUC)GCCU H.marism.3 3150 AUUAAAGGAGGUCGUGAGCUGGGUUUAGACC|GUC(GUGA)GACAGGUCG H.marism.3 3200 GCUGCUAUCU|ACUGGGUG-|UGuaAUGGUGUCU|GA|CAAGAA-CGACC H.marism.3 3250 GUA(UAGUAC(GAGA)GGAAC)UACGGUU|GGUGGCCACUGGUGUACCGG H.marism.3 3300 U|UGUUC-(GAGA)-GAGCAcguGCCGGGCA-GCCACGCGACA-CGGGGU H.marism.3 3350 AAGAGCU(GAACGCAUCUA)AGCUCGAAACCCACUUG|GAA-AAGAGACA H.marism.3 3400 CCG|c-|--------------------(-----)---------------- H.marism.3 3450 ------cgagg|uc|CCGCG(UACAAGA)CGCGGUCGAUAG|ACUCG|GG H.marism.3 3500 GUGUGCGCGUCgag----(guaa--)----cgaGACGU|UAAGCCC|A|C H.marism.3 3550 GAGCACUAacagaccaa---|agccaucau-------||||| T.acidophi 0 |---------------gugcucugcUAAUCUGCCUAGAGGAUG|GCUUGG T.acidophi 50 |UUCGGG-|cg|cCGAAGAAGGA|CGUG(CCAAGC)U|GCGAUAAGCCUU T.acidophi 100 GGG|GAGGC(GCAUGGA)GCCUUA-GAUCCAAGGAUC|UC-CGAAUGGG( T.acidophi 150 ACUU-)CCU|gcc-----------(guaa-)------------ggc-acu T.acidophi 200 cc-----(---gaa--a---)------ggagaggGAAC|CCGGGGAAUU| T.acidophi 250 GA(AACA)UCUUAGUACCCGGAGGAAAAGAAAUC(AA--UU)GAGA-U|A T.acidophi 300 CCGUUAGUAAA(GGCGA)UCGAAAGCGGUAGAAGGCAaaccgaa-uagc- T.acidophi 350 ccuuc(-gaaa)gaagg-gaaa-gauguggaguuu---ggu-cuuccucu T.acidophi 400 -----(-----)------aau-gccuccugaagcgagau-GAAu-cuuc- T.acidophi 450 (uggaaa)-gaagagc|c(uua)gaAGG(UGAUAGC)CCUGUA-aucgaa T.acidophi 500 gcuucagaagcuac-aaggggaaguaaccaGAGUACCAUGCGu(---cgu T.acidophi 550 uuu)uCGCGUGGGAAU-UUGGGUG(GcacuaA-)CAUCCAACCUUAAAUA T.acidophi 600 cg-uCCCGAGUCCGAUAGCGAACaAAGUACC(GUGA)GGGAAAGCUGAAA T.acidophi 650 AGAAACCC(g-gaa)GGGUGGUG-AAAAGAGCCUGAAACUAGGCAGAGau T.acidophi 700 a-aacuuauagggcag--uuaaga---------------gg-ugaa-guc T.acidophi 750 gu(uaacu)acgau---g-----------------gaucg--cuguccua T.acidophi 800 uuGUCCGU(GUUGAAG|A)ACGG|GCCAGGGAGUUCUG-ACGAGUGGCAA T.acidophi 850 GGUUAAuccu(---gaa-)aggaguAGCCGUAGC(GAAA)GCAacu-acc T.acidophi 900 cgcaca-----(gcaa)-----uggggggguggCGUG-(guaaa)-CGCG T.acidophi 950 UUUAGUCACUCGUGAGAGACCCGAAGCCGGUCGAUCUACACCUGAG|UAG T.acidophi 1000 GUUGAAGCUCAGU(GAAA)GCUGGGUGGAGGACCGaa-ccua-uucu-ga T.acidophi 1050 (ugugca-aa)ucgu-u|uggauGACUUGGGUGUAGGGGU(UAAAG)GCC T.acidophi 1100 AAUCUAGGCCGG-CAAUAGCGGGUUCCCCCCGAUACUACC(CGCA)GGUA T.acidophi 1150 GAC|CUCGAUGga-|gau|-UCUCGGCG|AGGUAG|AGCGACCGAUUGGU T.acidophi 1200 UGguaAG|CAGUC(gaaa-)GGCUG-CG-CCGACUUGUCAAACUCCGAAC T.acidophi 1250 U|UGUCGAGAUCgu-aga|AGUCGGG-UGCUAGGGGGC-A-GGG(A-UAA T.acidophi 1300 G)CUUU-GCUUCCGUGAUGG(GAACAA)CCAAGACGAG-GGUUAAGGU|C T.acidophi 1350 CCUAAGUUCUAGUUA-AGUGc------acuaaaua-GGUUUGUGGCCAAA T.acidophi 1400 GACAGUGGGGAGGUAGGC(UCAGAAGCA)GCCAUCCU|U(CAA)A|GAGU T.acidophi 1450 GC(GUAACA)GC|UCACUCACCGAGGUCACAUGC|CUAGAAGAUGGA-AG T.acidophi 1500 GGGCUAAAACUAGA|C|ACCGAGACC|UUCG|agcacc----(gaaa--) T.acidophi 1550 ----ggugaucuGGUAGGGGGG|CGUGCCAUG-UGGAUAGAAGUCUCC-C T.acidophi 1600 C(GAGA)GGAGGGAUGG|ACCGCAUGGUAUCGCGGAUCCUGGU|GAAAGU T.acidophi 1650 AGCagag-aaGAACCG(UGAGAA-u)CGG-UUC|CGCCGAAA-GGGCUAG T.acidophi 1700 GGUUCCUUGGCAAUG-(UUCGU)CA|GCCGAGGGUUAGU|CGA|-UCCUA T.acidophi 1750 AGGCCAU-ACC(UAACA)GGA--uauggucGAAG-GGGAAGCCGG(UUAA T.acidophi 1800 UAUU)CCGGC|AC-acugaac--guuu-------(-----)----u-gcc T.acidophi 1850 cugu-augagaagguucaggguaggggc|gguacg(-----gg-ugccaa T.acidophi 1900 ------)cguauu|-uaugcuca-uaagcgGAUGGAGAG-UC(GUAAU)G T.acidophi 1950 A|CGAGAAGUU--cgcga-aagagcguau-|--g|uuccc(--guuu)gg T.acidophi 2000 gaauc--gccucgauccccg-|gaucccaugaaaaucaugcaggg----- T.acidophi 2050 gucagguucag--u|A|UCGUACCAAGAACC(GACACU)GG|UGCCCCUA T.acidophi 2100 GG(ugagaag)CCUAA-GGCGU||UUUGGG-AU-AAUGGACGCGAGGGAA T.acidophi 2150 AUCGGCAAAAUAGCUCCGUAUC(UUCG)GUAUAAGGAGU|GCCUAU---u T.acidophi 2200 cc---------(--gugag)--------gga--AUAGGU|C(GCA)GUGA T.acidophi 2250 CGAAGGGACUC|CGACUGU(UUACCACAA)ACACAGAUCGCUG|CUAGUC T.acidophi 2300 C(GUA-A)GGAUGUGUAUAGCGGUUGAAACCUGCCCAGU|GCUGGUACCU T.acidophi 2350 GAA----agccccg---(uaca)----agggga----aGAAGGG|CCAGU T.acidophi 2400 AAAC|GGC|GGGGGU(AACUAUG)ACCCUC|U(UAA)GGUAGCGUAAUAC T.acidophi 2450 CUA|GCCGCU(UA-----AUU)GGCGGC|UUGCAUGAA-GGUUCAACGUG T.acidophi 2500 GGUCCCACUGUCCCCGCGUUCA-GCCCA|GUGAAAUU|-GAUGU-ACUGG T.acidophi 2550 (-UGCACA-AU)CCAGUCUCUCCCACGUGAAAGCGAAGUCCCCGUGG|AG T.acidophi 2600 CUUUACUGC|AGCCUGUAGCU|GUGGUGCGAUCCUGACUGCGUAGUGUAG T.acidophi 2650 GAAGGAGCCGUCG---AAGCUCUGGU(UUCG-)GCCGGAGU-GGAGGCGC T.acidophi 2700 CAAUGAAACACUUCC|CUCUCGGGAUUGCGUCACuaac------cuc(-u T.acidophi 2750 ucg-)gag-----ggacAACUAUUGGUGGGCAGUUUGGGUG(GGG)CGCC T.acidophi 2800 AC|GCCCCU(AACAACGUAAC)AGGGGC|C|C|CCAAAGGUCAGC|UCAG T.acidophi 2850 GAGGG(UCAGAAA)UCCUCCGUAGA|GU(G|U-AAAA)GCAAAAGCUGGC T.acidophi 2900 UUGACUGUGUUGC(agacaacua-)GCAACGCAGAUGC(GAAA)GCAGGG T.acidophi 2950 |UUUAGCGAACCACCCAGU-UCC(uccuuagug)GGG|GCGGGUG-auaa T.acidophi 3000 g|aga--gAAGUUACCC|CAGG|GAUAACUG|AGUCGUCCUCGGCAAGA( T.acidophi 3050 GUACACA)UCGACCCGAGGGUUUGCUACUUCGAUGUC|GUCU|G|UUCCU T.acidophi 3100 |AUCC|UGGUGCU(GCAUAA)GGUGCCAAGGGU|GGGGC(UGUUC)GCCC T.acidophi 3150 AUUAAAAGGGAUCCUGAGAUGGGUUCACUAC|GUC(GCGA)GACAGUAGG T.acidophi 3200 GUUGCUUCUC|CGUGGGAG-|UG-CUCGAUGUCU|GA|GGGGAA-GGGGC T.acidophi 3250 CUU(UAGUAC(GAGA)GGAAC)AAGGGCU|CGUGACCUCUAGUUUACCGG T.acidophi 3300 U|UGUCU-(GGCA)-AGGCA-ucGCCGGGUA-GCCACGUCAUACGCGGAU T.acidophi 3350 AAGAGCU(GAAAGCAUCUA)AGCUCGAAGCCGCCCCC|GAA-AAUAGACA T.acidophi 3400 UCG|uc|--------------------(-----)---------------- T.acidophi 3450 -----aucaga|uc|GCCUC(UAGAAGA)GAGGUUUGAUAG|AGCCG|GG T.acidophi 3500 AUGUAAGGAUCgagc---(uucg--)---gcgaGAUUU|UAAGUCC|A|C T.acidophi 3550 GGCUACUAa-agaucg--aa|ggcac---aa------||||| A.fulgid.1 0 |---------------cggcg--aaUAUCCCGGCCGGUGGAUG|GCUCGG A.fulgid.1 50 |CUCGGG-|cg|CCGACGAAGGG|CGUG(CCAAGC)U|GCGAAAAGCCCG A.fulgid.1 100 GGG|GAGGC(GCAAGGA)GCCUUA-GAACCCGGGAUU|CC-CGAAUGGG( A.fulgid.1 150 AUAU-)CCU|guccc---------(uucg-)---------gg-gac-gcu A.fulgid.1 200 ccc----(---uua--c---)-----gggagcggGAAC|GCGGGGAAAG| A.fulgid.1 250 GA(AACA)UCUGUGUACCCGCAGGAAAAGAAAGC(AA--AC)GCGA-U|G A.fulgid.1 300 CCGUGAGUAGG(GGCGA)CCGAAAGCGGCACAGCCCAaaccgaa-cauc- A.fulgid.1 350 cgggg(-guaa)cuccg-gaug-naugugguguugu-agga-cccugccu A.fulgid.1 400 -----(-----)------aaugccg--uggaacgaagcc-GAAgugguc- A.fulgid.1 450 (uggaac)-ggcccgc|c(gua)gaGGG(UGAUAGC)CCCGUA-ggcgua A.fulgid.1 500 aguuccacgguuac-aaggcgggguauccuGAGUACCGUGGGu(---ugg A.fulgid.1 550 aau)uCUCGCGGGAAG-CUGGGGG(UcaucaA-)CCCCCAAGGCUAAAUA A.fulgid.1 600 CGU-CCCGAGUCCGAUAGCGCAA-UAGUAGG(GUGA)CCGAAAGCUGAAA A.fulgid.1 650 AGAACCCC(gagaa)GGGGAGUG-AAAAGAGCCUGAAAUCGGCCGGGGau A.fulgid.1 700 a-gugagcaguggcuc--gaaagg-----uaaucccggcaaaggaaagug A.fulgid.1 750 cu(gaga-)ggcgc---gaguacgag-ccgggacaugccg--gagucacu A.fulgid.1 800 gcGUACGU(UCUGAAG|A)ACGG|GCCAGGGAGUGUAC-GGCAGGGGCGA A.fulgid.1 850 GGCUAAGGag(--ugaaa)cuCCGAAGCCGGAGG(GAAA)CCGaca-gcc A.fulgid.1 900 cgcagc-----(uuau)-----gcgaggggcggGGUG-(ugcu-)-CGCC A.fulgid.1 950 UGUAGUCCCUGCCGUACGACCCGAAGCCGGGCGAUCUAGGCGGGGG|CAG A.fulgid.1 1000 GGUGAAGCGGUGC(GAAA)GCGCCGUGGAGGCCCG-ca-ggg-g-ug-uu A.fulgid.1 1050 (gaugugcaa)aucgcu|ccucuGACCCCCGUCUAGGGGU(GAAAG)UCC A.fulgid.1 1100 AAUCGAGCCCGG-GGAUAGCUGGUUCCCCCCGAGACAUAC(CGCA)GUAU A.fulgid.1 1150 GAC|CCGUCCGga-|ggu|-ugGCGGUG|GGGUAG|AGC-ACUGAUAGGA A.fulgid.1 1200 GGaucCG|GGGGG(ugac-)ACCCU-CG-CCCUCCUGUCAAACUCCGAAU A.fulgid.1 1250 C|CACCGCcgccgu-aga|UGGGCGG-AGUCAGGGGCA-G-GGG(G-UAA A.fulgid.1 1300 G)CUCC-UGUUCCGAGAGGG(AGACAA)CCCAGACCGG-GGUUAAGGC|C A.fulgid.1 1350 CCUAAGUGCCGGCUA-AGUGuaaacggauuAAAGGAGGUCCCGGGUCGAA A.fulgid.1 1400 GACAGCGGGGAGGUAGGC(UUAGAAGCA)GCCACCCU|U(UAA)A|GAGU A.fulgid.1 1450 GC(GUAACA)GC|UCACCCGCCGAGACUCGGGGC|GCCGAAAAUGGA-CG A.fulgid.1 1500 GGGCUCAAGCCGGC|C|GCCGAUACC|CCGG|ggcucc----(gaaa--) A.fulgid.1 1550 ----ggagauccGGUAGGGGGG|CGUGCCGAU-GGCGCAGAAGCCUGA-G A.fulgid.1 1600 C(GUAA)GCUCGGGUGG|AGCCGUCGGUAACGAAUAUCCUGGC|GGUAGU A.fulgid.1 1650 AGCagca-uaGUCGGG(UGAGAA-U)CCC-GAC|CGCCGGAA-GGGCAAG A.fulgid.1 1700 GGUUCCACGGCAAUG-(UUCGU)CA|GCCGUGGGUGAGU|CGG|-UCCUA A.fulgid.1 1750 AGGUGGC-CCG(UAACU)CGG--cgccgccGAAAaGGGAAGCCGG(UUAA A.fulgid.1 1800 UAUU)CCGGC|AC-cgcugccc----gc--ugcc(uuuau)ggca----- A.fulgid.1 1850 ------cccgacgccucgggauaggccg|ggcggg(-----agcugccag A.fulgid.1 1900 ------)cccguc|-caagcguc-gaagccCCCGGAGAU-CC(GUAAU)G A.fulgid.1 1950 G|AGAGAAGGG--gguga-aggcguga-ug|---|---gc(--guaa)gc A.fulgid.1 2000 -------cggccgacuccug-|gggcccgugaaaaggg------------ A.fulgid.1 2050 ----gggcaguugg|A|CCGUACCGAGAACC(GACACA)GG|UGCCC-UG A.fulgid.1 2100 GG(ugaguag)CCUAA-GGCGU||GGCGGA-AC-AUUCCGGCCGAGGGAA A.fulgid.1 2150 UUCGGCAAGUUGGCCCCGUAUC(UUUG)GUAGAAGGGGU|GCCUGC---g A.fulgid.1 2200 guuu-------(---agc-)------agacc--GCAGGU|C(GCA)GUGA A.fulgid.1 2250 CUAGGGGGGAG|CGACUGU(UUACUAAAA)ACACAGGGGGCUG|CAAUCC A.fulgid.1 2300 G(GCA-A)CGGUUUGUACAGCCCCUGAGUCCUGCCCAGU|GCGGGUACCU A.fulgid.1 2350 GAA----acccggg---(uaca)----accggg----CGAAGGG|CCCGU A.fulgid.1 2400 AAAC|GGC|GGGGGU(AACUAUG)ACCCUC|U(UAA)GGUAGCGUAAUAC A.fulgid.1 2450 CUU|GCCGCU(UA-----AUU)GGCGGC|UUGCAUGAACGGAUUAACGAC A.fulgid.1 2500 UCCCCCACUGUCCCCGGCCGGA-AGCCG|GCGAACCC|-GACAU-CCCAG A.fulgid.1 2550 (-UGAAGA-GU)CUGGGGACCCCCGUUGGGAAGCGAAGACCCUGUGG|AG A.fulgid.1 2600 CUUUACUGC|AGCCUGCCGUU|GCUCCACAGCUGGGGGUGCGCAGGGUAG A.fulgid.1 2650 GCGGGAGGCUUCG---AAGCCCCGUC(UCCG-)GGCGGGGU-GGAGCCGU A.fulgid.1 2700 CGAUGAGACACCGCC|CACCUCCAGCUGUGGAGCuaac------ucc(cg A.fulgid.1 2750 cug-)gga-----ggacAUCGGUAGGUGGGCAGUUUGGGUG(GGG)CGCC A.fulgid.1 2800 AC|UCCCCC(GAAAAGGUAUC)GGGGGA|G|C|CCAAAGGUCGGC|UCAG A.fulgid.1 2850 GCGGG(UCAGAAA)UCCGCCGUAGA|GU(G|C-AAGG)GCAAAAGCCGGC A.fulgid.1 2900 CUGACGUGAACCC(gcaaaauaa-)GGGUUCACGAGCC(GAAA)GGCGGG A.fulgid.1 2950 |CCUAGCGAACCACCCUGG-CCU(--uuuggug)AGG|CCGGGUG-acga A.fulgid.1 3000 c|aga--aAAGCUACCC|CAGG|GAUAACAG|AGUUGUCCCCGGCGAGA( A.fulgid.1 3050 GUACAUA)UCGACCCGGGGGCUUGCUACCUCGAUGUC|GGCU|C|UCCCC A.fulgid.1 3100 |AUCC|UGGCCGU(GCAGCA)GCGGCCAAGGGU|GAGGU(UGUUC)GCCU A.fulgid.1 3150 AUUAAAGGGGAUCGUGAGCUGGGUUUAGACC|GUC(GUGA)GACAGGUCG A.fulgid.1 3200 GUUGCUAUCU|AACGGGGG-|UGucAGGGCGGCU|GA|GGGGAA-GGAGG A.fulgid.1 3250 CUC(UAGUAC(GAGA)GGAAC)GAGCCUC|CGGCGCCACUGGUUUACCGG A.fulgid.1 3300 U|UGUCC-(GGCA)-GGGCA-ucGCCGGGCA-GCUACGCGCCACGCGGUU A.fulgid.1 3350 AAAGGCU(GAAAGCAUCUA)AGCCUGAAACCGCCCCC|GAA-AAGAGCCG A.fulgid.1 3400 CCC|au|--------------------(-----)---------------- A.fulgid.1 3450 ------uaagg|gc|UCCCG(UAAAAGA)CGGGGUUGAUAG|GACCG|GG A.fulgid.1 3500 GUGUAAGCGGCgagc---(uucg--)---gcgaGCCGU|UCAGCCC|G|C A.fulgid.1 3550 GGUCACUAaucgcccg----|cgccg-----------||||| A.fulgid.2 0 |---------------cggcg--aaUAUCCCGGCCGGUGGAUG|GCUCGG A.fulgid.2 50 |CUCGGG-|cg|CCGACGAAGGG|CGUG(CCAAGC)U|GCGAAAAGCCCG A.fulgid.2 100 GGG|GAGGC(GCAAGGA)GCCUUA-GAACCCGGGAUU|CC-CGAAUGGG( A.fulgid.2 150 AUAU-)CCU|guccc---------(uucg-)---------gg-gac-gcu A.fulgid.2 200 ccc----(---uua--c---)-----gggagcggGAAC|GCGGGGAAAG| A.fulgid.2 250 GA(AACA)UCUGUGUACCCGCAGGAAAAGAAAGC(AA--AC)GCGA-U|G A.fulgid.2 300 CCGUGAGUAGG(GGCGA)CCGAAAGCGGCACAGCCCAaaccgaa-cauc- A.fulgid.2 350 cgggg(-guaa)cuccg-gaug-gaugugguguugu-agga-cccugccu A.fulgid.2 400 -----(-----)------aaugccg--uggaacgaagcc-GAAgugguc- A.fulgid.2 450 (uggaac)-ggcccgc|c(gua)gaGGG(UGAUAGC)CCCGUA-ggcgua A.fulgid.2 500 aguuccacgguuac-aaggcgggguauccuGAGUACCGUGGGu(---ugg A.fulgid.2 550 aau)uCUCGCGGGAAG-CUGGGGG(UcaucaA-)CCCCCAAGGCUAAAUA A.fulgid.2 600 CGU-CCCGAGUCCGAUAGCGCAA-UAGUAGG(GUGA)CCGAAAGCUGAAA A.fulgid.2 650 AGAACCCC(gagaa)GGGGAGUG-AAAAGAGCCUGAAAUCGGCCGGGGau A.fulgid.2 700 a-gugagcaguggcuc--gaaagg-----uaaucccggcaaaggaaagug A.fulgid.2 750 cu(gaga-)ggcgc---gaguacgag-ccgggacaugccg--gagucacu A.fulgid.2 800 gcGUACGU(UCUGAAG|A)ACGG|GCCAGGGAGUGUAC-GGCAGGGGCGA A.fulgid.2 850 GGCUAAGGag(--ugaaa)cuCCGAAGCCGGAGG(GAAA)CCGaca-gcc A.fulgid.2 900 cgcagc-----(uuau)-----gcgaggggcggGGUG-(ugcu-)-CGCC A.fulgid.2 950 UGUAGUCCCUGCCGUACGACCCGAAGCCGGGCGAUCUAGGCGGGGG|CAG A.fulgid.2 1000 GGUGAAGCGGUGC(GAAA)GCGCCGUGGAGGCCCG-ca-ggg-g-ug-uu A.fulgid.2 1050 (gaugugcaa)aucgcu|ccucuGACCCCCGUCUAGGGGU(GAAAG)UCC A.fulgid.2 1100 AAUCGAGCCCGG-GGAUAGCUGGUUCCCCCCGAGACAUAC(CGCA)GUAU A.fulgid.2 1150 GAC|CCGUCCGga-|ggu|-ugGCGGUG|GGGUAG|AGC-ACUGAUAGGA A.fulgid.2 1200 GGaucCG|GGGGG(ugac-)ACCCU-CG-CCCUCCUGUCAAACUCCGAAU A.fulgid.2 1250 C|CACCGCcgccgu-aga|UGGGCGG-AGUCAGGGGCA-G-GGG(G-UAA A.fulgid.2 1300 G)CUCC-UGUUCCGAGAGGG(AGACAA)CCCAGACCGG-GGUUAAGGC|C A.fulgid.2 1350 CCUAAGUGCCGGCUA-AGUGuaaacg-a-uAAAGGAGGUCCCGGGUCGAA A.fulgid.2 1400 GACAGCGGGGAGGUAGGC(UUAGAAGCA)GCCACCCU|U(UAA)A|GAGU A.fulgid.2 1450 GC(GUAACA)GC|UCACCCGCCGAGACUCGGGGC|GCCGAAAAUGGA-CG A.fulgid.2 1500 GGGCUCAAGCCGGC|C|GCCGAUACC|CCGG|ggcucc----(gaaa--) A.fulgid.2 1550 ----ggagauccGGUAGGGGGG|CGUGCCGAU-GGCGCAGAAGCCUGAGG A.fulgid.2 1600 C(GUAA)GCUCGGGUGG|AGCCGUCGGUAACGAAUAUCCUGGC|GGUAGU A.fulgid.2 1650 AGCagca-uaGUCGGG(UGAGAA-U)CCC-GAC|CGCCGGAA-GGGCAAG A.fulgid.2 1700 GGUUCCACGGCAAUG-(UUCGU)CA|GCCGUGGGUGAGU|CGG|-UCCUA A.fulgid.2 1750 AGGUGGC-CCG(UAACU)CGG--cgccgccGAAAaGGGAAGCCGG(UUAA A.fulgid.2 1800 UAUU)CCGGC|AC-cgcugccc----gc--ugcc(uuuau)ggca----- A.fulgid.2 1850 ------cccgacgccucgggauaggccg|ggcggg(-----agcugccag A.fulgid.2 1900 ------)cccguc|-caagcguc-gaagccCCCGGAGAU-CC(GUAAU)G A.fulgid.2 1950 G|AGAGAAGGG--gguga-aggcguga-ug|---|---gc(--guaa)gc A.fulgid.2 2000 -------cggccgacuccug-|gggcccgugaaaaggg------------ A.fulgid.2 2050 ----gggcaguugg|A|CCGUACCGAGAACC(GACACA)GG|UGCCC-UG A.fulgid.2 2100 GG(ugaguag)CCUAA-GGCGU||GGCGGA-AC-AUUCCGGCCGAGGGAA A.fulgid.2 2150 UUCGGCAAGUUGGCCCCGUAUC(UUUG)GUAGAAGGGGU|GCCUGC---g A.fulgid.2 2200 guuu-------(---agc-)------agacc--GCAGGU|C(GCA)GUGA A.fulgid.2 2250 CUAGGGGGGAG|CGACUGU(UUACUAAAA)ACACAGGGGGCUG|CAAUCC A.fulgid.2 2300 G(GCA-A)CGGUUUGUACAGCCCCUGAGUCCUGCCCAGU|GCGGGUACCU A.fulgid.2 2350 GAA----accaggg---(uaca)----accggg----CGAAGGG|CCCGU A.fulgid.2 2400 AAAC|GGC|GGGGGU(AACUAUG)ACCCUC|U(UAA)GGUAGCGUAAUAC A.fulgid.2 2450 CUU|GCCGCU(UA-----AUU)GGCGGC|UUGCAUGAACGGAUUAACGAC A.fulgid.2 2500 UCCCCCACUGUCCCCGGCCGGA-AGCCG|GCGAACCC|-GACAU-CCCAG A.fulgid.2 2550 (-UGAAGA-GU)CUGGGGACCCCCGUUGGGAAGCGAAGACCCUGUGG|AG A.fulgid.2 2600 CUUUACUGC|AGCCUGCCGUU|GCUCCACAGCUGGGGGUGCGCAGGGUAG A.fulgid.2 2650 GCGGGAGGCUUCG---AAGCCCCGUC(UCCG-)GGCGGGGU-GGAGCCGU A.fulgid.2 2700 CGAUGAGACACCGCC|CACCUCCAGCUGUGGAGCuaac------ucc(cg A.fulgid.2 2750 cug-)gga-----ggacAUCGGUAGGUGGGCAGUUUGGGUG(GGG)CGCC A.fulgid.2 2800 AC|UCCCCC(GAAAAGGUAUC)GGGGGA|G|C|CCAAAGGUCGGC|UCAG A.fulgid.2 2850 GCGGG(UCAGAAA)UCCGCCGUAGA|GU(G|C-AAGG)GCAAAAGCCGGC A.fulgid.2 2900 CUGACGUGAACCC(gcaaaauaa-)GGGUUCACGAGCC(GAAA)GGCGGG A.fulgid.2 2950 |CCUAGCGAACCACCCUGG-CCU(--uuuggug)AGG|CCGGGUG-acga A.fulgid.2 3000 c|aga--aAAGCUACCC|CAGG|GAUAACAG|AGUUGUCCCCGGCGAGA( A.fulgid.2 3050 GUACAUA)UCGACCCGGGGGCUUGCUACCUCGAUGUC|GGCU|C|UCCCC A.fulgid.2 3100 |AUCC|UGGCCGU(GCAGCA)GCGGCCAAGGGU|GAGGU(UGUUC)GCCU A.fulgid.2 3150 AUUAAAGGGGAUCGUGAGCUGGGUUUAGACC|GUC(GUGA)GACAGGUCG A.fulgid.2 3200 GUUGCUAUCU|AACGGGGG-|UGucAGGGCGGCU|GA|GGGGAA-GGAGG A.fulgid.2 3250 CUC(UAGUAC(GAGA)GGAAC)GAGCCUC|CGGCGCCACUGGUUUACCGG A.fulgid.2 3300 U|UGUCC-(GGCA)-GGGCA-ucGCCGGGCA-GCUACGCGCCACGCGGUU A.fulgid.2 3350 AAAGGCU(GAAAGCAUCUA)AGCCUGAAACCGCCCCC|GAA-AAGAGCCG A.fulgid.2 3400 CCC|au|--------------------(-----)---------------- A.fulgid.2 3450 ------uaagg|gc|UCCCG(UAAAAGA)CGGGGUUGAUAG|GACCG|GG A.fulgid.2 3500 GUGUAAGCGGCgagc---(uucg--)---gcgaGCCGU|UCAGCCC|G|C A.fulgid.2 3550 GGUCACUAaucgcccg----|cgccg-----------||||| T.celer 0 |----------ggggcagaga-accUAAGCCGUCUGGUGGAUG|GCUCGG T.celer 50 |CUCGGGg|cg|cCGACGAAGGG|CGUG(GCAAGC)U|GCGAUAAGCCCC T.celer 100 GGC|GAGGC(GCAGGCA)GCCGUC-GAACCGGGGAUU|CC-CGAAUGGG( T.celer 150 ACCU-)CCC|gcggc---------(uuuu-)---------gc-cgc-acu T.celer 200 ccc----(---agu--c---)-----gggaggggGAAC|GCGGGGAAUU| T.celer 250 GA(AACA)UCUUAGUACCCGCAGGAAAAGAAAGC(AA--AA)GCGA-U|G T.celer 300 CCGUUAGUAGG(GGCGA)CCGAAAGCGGCACAGGGCAaacugaa-cccu- T.celer 350 ccggg(-gaaa)cccgg-aggg-gaugugguguagu-aggg-cccugca- T.celer 400 -----(-----)-----cuggagccucgagggugaagcc-GAAguccgc- T.celer 450 (uggaac)-gcggcgc|c(gua)gaGGG(UGAAAGC)CCCGUA-ggcgua T.celer 500 agcccucaggcucc---ugcagggu-uccuGAGUACCGUCGGu(---cgg T.celer 550 aua)uCCGGCGGGAAG-CUGGGAG(GcaucgG-)CUCCCAACCCUAAAUA T.celer 600 cg-uCCCGAGACCGAUAGCGAAC-UAGUACC(GUGA)GGGAAAGCUGAAA T.celer 650 AGCACCCC(u-ggc)AGGGGGUG-AAAAGAGCCUGAAACCAGACGGCGau T.celer 700 a-ggugggugcggccc--gaaaggguuga--cccuccccgaaggaaacac T.celer 750 gg(gcga-)ccgug---gaguacgag-gggaggc-gaccg--ggguugca T.celer 800 ccGUCCGU(CUUGGAU|C)ACGG|GGCAGGGAGUUCAC-GGCCGUGGCGA T.celer 850 GGUUAAgggg(--guuaa)ccccGAAGCCACAGG(GAAA)CCGacagguc T.celer 900 cgcagccc---(guaa)---gggugagggacggGGUGU(gaaa-)GCGCC T.celer 950 CGGAGUCACGGCCGUGAGACCCGAAGCCGGUCGAUCUAGCCCGGGG|CAG T.celer 1000 GGUGAAGUCCCUC(AACA)GAGGGAUGGAGGCCCG-auaggg-g-ug-cu T.celer 1050 (gacgugcaa)uucgcu|cccguGACCCCGGGCUAGGGGU(GAAAG)GCC T.celer 1100 AAUCGAGGCCGG-CGAUAGCUGGUUCCCGCCGAAUUAUCC(CUCA)GGAU T.celer 1150 AGC|CCGGCCGga-|ggu|-AGGUGGUG|GGGUAG|AGC-ACUGAUUGGG T.celer 1200 GGuuuAG|GGGGA(gaaa-)UCCCC-CG-GCUCCCUGUCAAACUCCGAAC T.celer 1250 C|CACUGCCGCCgu-aga|aggccgg--AGUAGGGUGA-C-GGU(G-UAA T.celer 1300 G)-CCG-UCAACCGAGAGGG(GAACAA)CCCAGACCGG-GGUUAAGGC|C T.celer 1350 CCUAAAUGCCGGCUA-AGUGuu-a--cuccaaaGGGCGUCCCUGGCCUUA T.celer 1400 GACAGCGGGGAGGUAGGC(UUAGAAGCA)GCCAUCCU|U(UAA)A|GAGU T.celer 1450 GC(GUAACA)GC|UCACCCGUCGAGGUCAGGGGC|CCCGAAAAUGGA-CG T.celer 1500 GGGCUUAAGCCGGC|U|GCCGAGACC|CCGG|cgcacggacc(gauu--) T.celer 1550 gguccgugaucgGGUAGGCGGG|CGUGCCGGU-GGGGUGGAAGCCGGG-C T.celer 1600 C(GUAA)GGUCCGGUGG|ACCCGUCGGUAUUGUGGAUCCUGCC|GGGAGU T.celer 1650 AGCagca-uaGCCGGG(UGAGAA-U)CCC-GGC|CGCCGAAG-GGGCCAG T.celer 1700 GGUUCCACGGCAAUG-(UUCAU)CA|GCCGUGGGUUAGU|CGG|-UCCUA T.celer 1750 AGCCAGU-CCG(UAACU)CGG--cgcuggcGAAA-GGGAAACGGG(UUUA T.celer 1800 UAUU)CCCGU|AC-cgcggugg-uagg---ugcg(-gcaa)cgcaa-gcc T.celer 1850 c-gaggggugacgccucgggguaggcgg|accggc(------ccacaag- T.celer 1900 ------)gccggc|-uaagcgua-uaagucCGGGGAGUG-CC(GUAAU)G T.celer 1950 G|CGAGAACCG--gauga-aagcgcgaau-|ggc|cuccc(--guaa)gg T.celer 2000 gggguu-ccgccgaucccug-|gggcccgugaaaagcccuc-gggaa--- T.celer 2050 cgauccaccgc--g|A|CCGUACCGAGAACC(GACACA)GG|UGCCCCUG T.celer 2100 GG(ugagaag)CCUAA-GGCGU||GUCGGG-GGAAACCCAGCCGAGGGAA T.celer 2150 CUCGGCAAAUUGGCCCCGUAAC(UUCG)GGAUAAGGGGU|GCCUGC---g T.celer 2200 ggu--------(--gcgua)-------accc--GCAGGU|C(GCA)GUGA T.celer 2250 CUCGGGGGACC|CGACUGU(UUAGUAAAA)ACACAGGUCCCAG|CUAGCC T.celer 2300 C(GAA-A)GGGUUUGUACUGGGGCCGACGCCUGCCCAGU|GCCGGUAUGU T.celer 2350 GAA----gcccggg---(ucca)----accggg----uGAAGCA|CCGGU T.celer 2400 AAAC|GGC|GGGGGU(AACUAUA)ACCCUC|U(UAA)GGUAGCGAAAUUC T.celer 2450 CUU|GUCGGU(UA-----AAU)GCCGAC|CUGCAUGAAUGGCGUAACGAG T.celer 2500 GUCCCCACUGUCCCCGGCUGGG-GCCCG|GCGAAACC|-ACUG--CCAGG T.celer 2550 (-CGCAUA-UG)CCUGGGACCUCCGGUGGGAAGCGAAGACCCCAUGG|AG T.celer 2600 CUUUACUGC|AGCCUGCCGUU|GCCGUACGGCGGGGGGUGCGCAGCGUAG T.celer 2650 GCGGGAGGCGUCG---AAGCCCGCCU(UCCG-)GGGCGGGU-GGAGCCGU T.celer 2700 CCAUGAGACACCGCC|CACCCUCUGCCGUACGGCuaac-----cccc(-- T.celer 2750 gac-)gggg----ggacAGCGGUAGGUGGGCAGUUUGGCUG(GGG)CGGC T.celer 2800 AC|ACCCUC(GAAAAGGUAUC)GAGGGU|G|C|CCUAAGGUCGGC|UCAG T.celer 2850 GCGGG(UCAGGAA)UCCGCCGUAGA|GU(G|C-AAGG)GCAAAAGCCGGC T.celer 2900 CUGACUGGACCCG(uaacagagg-)CGGGUCCAGCCGC(GAAA)GCGUGG T.celer 2950 |CCUAGCGAACCCCUGUGC-CUC(--cccggug)GGG|GCCAGGG-auga T.celer 3000 c|aga--aAAGCUACCC|UGGG|GAUAACAG|AGUCGUCUCGGGCGAGA( T.celer 3050 GCCCAUA)UCGACCCCGAGGCUUGCUACCUCGCUGUC|GGCU|C|UUCCC T.celer 3100 |AUCC|UGGCCCU(GCAGCA)GGGGCCAAGGGU|GGGGG(UGUUC)ACCC T.celer 3150 AUUAAAGGGGAACGUGAGCUGGGUUUAGACC|GUC(GUGA)GACAGGUCG T.celer 3200 GAUGCUAUCU|ACCGGAGG-|UG-UUGGCCGCCU|GA|GGGGAA-GGCUC T.celer 3250 CCC(CAGUAC(GAGA)GGAAC)AGGGAGC|CGCGGCCUCUGGUCUACCGG T.celer 3300 U|UGUCC-(UACA)-GGGCA-caGCCGGGCA-GCUACGCCGUG-UCCGAU T.celer 3350 AAGGCCU(GAAAGCAUCUA)AGGCCGAAGCGGUCCCC|GAA-AAUAGGCG T.celer 3400 GCC|ac|ucccaggcgcaggggguc--(gggc-)gaccgguccuuugccu T.celer 3450 ggga--cgagg|gc|UCGGG(AAGAAGA)CCCGUUUGAUGG|GGCGG|GG T.celer 3500 AUGUAAGCGGGaagg---(gaaa--)---ccgaCCCGU|UCAGUCU|G|C T.celer 3550 CGCUCCCAaucgcccgagg-|uuucugccuc------||||| P.furiosus 0 |~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|~~~~~~ P.furiosus 50 |~~~~~~~|~~|~~~~~~~~~~~|~~~~(~~~~~~)~|~~~~~~~~~~~~ P.furiosus 100 ~~~|~~~~~(~~~~~~~)~~~~~~~~~~~~~~~~~~~|~~~~~~~~~~~( P.furiosus 150 ~~~~~)~~~|~~~~~~~~~~~~~~(~~~~~)~~~~~~~~~~~~~~~~~~~ P.furiosus 200 ~~~~~~~(~~~~~~~~~~~~)~~~~~~~~~~~~~~~~~|~~~~~~~~~~| P.furiosus 250 ~~(~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~(~~~~~~)~~~~~~|~ P.furiosus 300 ~~~~~~~~~~~(~~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ P.furiosus 350 ~~~~~(~~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ P.furiosus 400 ~~~~~(~~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ P.furiosus 450 (~~~~~~)~~~~~~~~|~(~~~)~~~~~(~~~~~~~)~~~~~~~~~~~~~ P.furiosus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~(~~~~~~ P.furiosus 550 ~~~)~~~~~~~~~~~~~~~~~~~~(~~~~~~~~)~~~~~~~~~~~~~~~~ P.furiosus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~(~~~~)~~~~~~~~~~~~~ P.furiosus 650 ~~~~~~~~(~~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ P.furiosus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ P.furiosus 750 ~~(~~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ P.furiosus 800 ~~~~~~~~(~~~~~~~|~)~~~~|~~~~~~~~~~~~~~~~~~~~~~~~~~ P.furiosus 850 ~~~~~~~~~~(~~~~~~~)~~~~~~~~~~~~~~~(~~~~)~~~~~~~~~~ P.furiosus 900 ~~~~~~~~~~~(~~~~)~~~~~~~~~~~~~~~~~~~~~(~~~~~)~~~~~ P.furiosus 950 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|~~~ P.furiosus 1000 ~~~~~~~~~~~~~(~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ P.furiosus 1050 (~~~~~~~~~)~~~~~~|~~~~~~~~~~~~~~~~~~~~~~(~~~~~)~~~ P.furiosus 1100 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~(~~~~)~~~~ P.furiosus 1150 ~~~|~~~~~~~~~~|~~~|-~~~~~~~~|~~~~~~|~~~~~~~~~~~~~~ P.furiosus 1200 ~~~~~~~|~~~~~(~~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ P.furiosus 1250 ~|~~~~~~~~~~~~~~~~|~~~~~~~~~~~~~~~~~~~-~~~~~(~~~~~ P.furiosus 1300 ~)~~~~~~~~~~~~~~~~~~(~~~~~~)~~~~~~~~~~~~~~~~~~~~|~ P.furiosus 1350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ P.furiosus 1400 ~~~~~~~~~~~~~~~~~~(~~~~~~~~~)~~~~~~~~|~(~~~)~|~~~~ P.furiosus 1450 ~~(~~~~~~)~~|~~~~~~~~~~~~~~~~~~~~~|~~~~~~~~~~~~~~~ P.furiosus 1500 ~~~~~~~~~~~~~~|~|~~~~~~~~~|~~~~|~~~~~~~~~~(~~~~~~) P.furiosus 1550 ~~~~~~~~~~~~~~~~~~~~~~|~~~~~~~~~~~~~~~~~~~~~~~~~~~ P.furiosus 1600 ~(~~~~)~~~~~~~~~~|~~~~~~~~~~~~~~~GGAUCCUAGC|GGGAGU P.furiosus 1650 AGCagcg-uaGUCGGG(UGAGAA-U)CCC-GAC|CGCCGGAG-GGGCCAG P.furiosus 1700 GGUUCCACGGCAAUG-(GUCGU)CA|GCCGUGGGUUAGU|CGG|-UCCUA P.furiosus 1750 ACCCCGC-CCG(UAACU)CGG--CGCGGGGGAAA-GGGAAACGGG(UUUA P.furiosus 1800 UAUU)CCCGU|AC-cgcggggg-uagg---ugcg(-gcaa)cgcaa-gcc P.furiosus 1850 cgga-gggugacgccucgggguaggcgg|accggc(------cgaugag- P.furiosus 1900 ------)gccggc|-uaagcgua-uaagccCGGGGAGUG-CC(GUAAU)G P.furiosus 1950 G|CGAGAACCG--gguga-aagcgcgaau-|ggc|ccccc(--guua)gg P.furiosus 2000 gggguu-ccgccgaucccug-|gggcccgugaaaagccu-ccgggaauuc P.furiosus 2050 cgaucccccgc--G|A|CCGUACCGAGAACC(GACACA)GG|UGCCCCUG P.furiosus 2100 GG(ugagaag)CCUAA-GGCGU||GUCGGG-GGAAACCCGGCCGAGGGAA P.furiosus 2150 CUCGGCAAACUGGCCCCGUAAC(UUCG)GGAGAAGGGGU|GCCUGC---g P.furiosus 2200 ggu--------(--gcgua)-------accc--GCAGGU|C(GCA)GUGA P.furiosus 2250 CUAGGGGGGCC|CGACUGU(UUAAUAAAA)ACACAGGUCCCAG|CUAGCC P.furiosus 2300 C(GAA-A)GGGUUUGUACUGGGGCCGACGCCUGCCCAGU|GCCGGUAUGU P.furiosus 2350 GAA----gcccggg---(uaca)----accggg----uGAAGCA|CCGGU P.furiosus 2400 AAAC|GGC|GGGGGU(AACUAUA)ACCCUC|U(UAA)GGUAGCGAAAUUC P.furiosus 2450 CUU|GUCGGU(UA----aAAU)GCCGAC|CUGCAUGAAUGGCGUAACGAG P.furiosus 2500 GUCCCCGCUGUCCCCGGCCGGG-GCCCG|GCGAAACC|-UCUG--CCUGG P.furiosus 2550 (-CGCGCA-UG)CCAGGGACCCCCGGUGGGAAGCGAAGACCCCAUGG|AG P.furiosus 2600 CUUUACUGC|AGCCUGCCGUU|GCCACACGGCGGGGGGUGCGCAGCGUAG P.furiosus 2650 GCGGGAGGCGUCG---AAGCCCGGCC(UCCG-)GGUCGGGU-GGAGCCGU P.furiosus 2700 CCAUGAGACACCGCC|CACUCCCCGCUGUGUGGCuaac-----cccc(-g P.furiosus 2750 aaa-)gggg----ggacAGCGGUAGGUGGGCAGUUUGGCUG(GGG)CGGC P.furiosus 2800 AC|GCCUCC(GAAAAGGUAUC)GGAGGC|G|C|CCUAAGGUCGGC|UCAG P.furiosus 2850 GCGGG(UCAGGAA)UCCGCCGUAGA|GU(G|C-AAGG)GCAAAAGCCGGC P.furiosus 2900 CUGACUGGACCCG(uaacagagg-)CGGGUCCAGCCCC(GAAA)GGGUGG P.furiosus 2950 |CCUAGCGAACCCCUGUGC-CUC(--cccggug)GGG|GCCAGGG-auga P.furiosus 3000 c|aga--aAAGCUACCC|UGGG|GAUAACAG|AGUCGUCUCGGGCGAGA( P.furiosus 3050 GCCCAUA)UCGACCCCGAGGCUUGCUACCUCGCUGUC|GGCU|C|UUCCC P.furiosus 3100 |AUCC|UGGCCCU(GCAGCA)GGGGCCAAGGGU|GGGGG(UGUUC)ACCC P.furiosus 3150 AUUAAAGGGGAACGUGAGCUGGGUUUAGACC|GUC(GUGA)GACAGGUCG P.furiosus 3200 GAUGCUAUCU|ACCGGGGG-|UG-UUGGCCGCCU|GA|GGGGAA-GGUGC P.furiosus 3250 CCN(UAGUAC(GAGA)GGAAC)AGGGUGC|CGCGGCCUCUGGUCUACCGG P.furiosus 3300 U|UGUCC-(UCCC)-GGGCA-ucGCCGGGCA-GCUACGCCGCA-GCCGAU P.furiosus 3350 AAGGCCU(GAAAGCAUCUA)AGGCC--AACGGCCCCC|GAA-AAUAGGCG P.furiosus 3400 GCC|gu|ucccuggcgcuugggccugg(gcga-)cc-ggcccau-ugcca P.furiosus 3450 ggga--cgagg|gc|UCGGG(UAGAAGA)CCCGGUUGAUAG|GGCGG|GG P.furiosus 3500 AUGUAAGCGGGaagg---(gucaa-)---ccgaCCCGC|UUAGUCC|G|C P.furiosus 3550 CGCCCCUAaucgcccgaggu|ccugccccucg-----||||| P.horikosh 0 |-------agggggucaggac--ucUAaGCCGCCCGGUGGAUG|GCUCGG P.horikosh 50 |CUCGGGg|cg|cCGACGAAGGG|CGUG(GCAAGC)U|GCGAUAAGCCCC P.horikosh 100 GGC|GAGGC(GCAGGCA)GCCGUC-GAACCGGGGAUU|CC-CGAAUGGG( P.horikosh 150 accu-)CCC|gcggc---------(uuau-)---------gc-cgc-acu P.horikosh 200 ccgggg-(---uuu-au---)--ccccggaggggGAAC|GCGGGGAAUU| P.horikosh 250 GA(AACA)UCUUAGUACCCGCAGGAAAAGAAAGC(aa--aa)GCGA-U|G P.horikosh 300 CCGUGAGUAGG(GGCGA)CCGAAAACGGCAGAGGGCAaacugaa-cccc- P.horikosh 350 ggacc(gacga)gguuc-gggg-gaugugggguugu-agggcccccguau P.horikosh 400 g----(-----)-----agacccuc--gcgggugaagcc-GAAguccgc- P.horikosh 450 (uggaac)-gcggcgc|c(gga)gaGGG(UGAUAGC)CCCGUA-GGCgua P.horikosh 500 agcccgcagggucu-----cgggggacccuGAGUACCGUCGGU(---ugg P.horikosh 550 aua)UCCGGCGGGAAG-CUGGGAG(GCAUCGG-)CUCCCAACCCUAAAUA P.horikosh 600 cg-uCCCGAGACCGAUAGCGAAC-UAGUACC(GUGA)GGGAAAGCUGAAA P.horikosh 650 AGCACCCC(gggag)GGGGG-UG-AAAAGAGCCUGAAACCGGGCGGCGau P.horikosh 700 a-ggagggugcggccc--gaaaggaauga--gccuccccgaaggaaaccg P.horikosh 750 cg(gcga-)cgcgg---gaguacgag-gggaggg-gaccg--ggguugca P.horikosh 800 ccGUCCGU(CUUGAAA|C)ACGG|GGCAGGGAGUUCGC-GGCCGUGGCGA P.horikosh 850 GGUUAagggg(-guuaag)ccccguagccgcAGG(GAAA)CCgacaugcc P.horikosh 900 cgcagccgggc(uuau)gcccggugaggggcggGGUGC(gaaa-)GCGCC P.horikosh 950 CGGAGUCACGGCCGCGAGACCCGAAACCGGUCGAUCUAGCCCGGGG|CAG P.horikosh 1000 GGUGAAGUCCCUC(AACA)GAGGGAUGGAGGCCCgcua-ggg-g-ug-cu P.horikosh 1050 (gaugugcag)uucgcu|cccgugACCCCGGGCUAGGGGU(GAAAG)GCC P.horikosh 1100 AAUCGAGGCCGG-AGAUAGCUGGUUCCCGCCGAAUCAUCC(CGCA)GGAU P.horikosh 1150 GGC|CUCCCCgga-|ggu|-agGCGGUG|GGGUAG|AGC-ACUGAUUGGA P.horikosh 1200 GGugcag|ggggc(gaaa-)gcccc-cg-gccuccugucaaaCUCCGAAC P.horikosh 1250 C|CACCGCCGCCgu-aga|ugggggg-aguag-ggugg-c-GGU(G-UAA P.horikosh 1300 G)-CCGUCCACC-GAGAGGG(GAACAA)CCCAGACCGG-GGUUAAGGC|C P.horikosh 1350 CCAAAGUGCCGGCUA-AGUGu-uac--uccaaaGGGUGUCCCGGGCCUUA P.horikosh 1400 GACAGCGGGGAGGUAGGC(UUAGAAGCA)GCCAUCCU|U(UAA)A|GAGU P.horikosh 1450 GC(GUAACA)GC|UCACCCGUCGAGGUCCGGGGC|CCCGAAAAUGGA-CG P.horikosh 1500 GGGCUCAAGCCGGC|C|GCCGAGACC|CCGG|cgcacggacc(gauu--) P.horikosh 1550 gguccgugaucggGUAGGCGGG|CGUGCCGGU-GGCGUAGAAGCCGGG-C P.horikosh 1600 C(GUAA)GGUCCGGUGG|AgccgccgguaucGCGGAUCCUGCC|GGGAGU P.horikosh 1650 AGCagcg-uaGUCGGG(UGAGAA-U)CCC-GAC|CGCCGGAG-GGGCCAG P.horikosh 1700 GGUUCCACGGCAAUG-(GUCGU)CA|GCCGUGGGUUAGU|CGG|-UCCUA P.horikosh 1750 ACCCCGC-CCG(UAACU)CGG--CGCGGGGGAAA-GGGAAACGGG(UUUA P.horikosh 1800 UAUU)CCCGU|AC-cgcggggg-uagg---ugcg(-gcaa)cgcaa-gcc P.horikosh 1850 cgga-gggugacgccucgggguaggcgg|accggc(------cgaugag- P.horikosh 1900 ------)gccggc|-uaagcgua-uaagccCGGGGAGUG-CC(GUAAU)G P.horikosh 1950 G|CGAGAACCG--gguga-aagcgcgaau-|ggc|ccccc(--guua)gg P.horikosh 2000 gggguu-ccgccgaucccug-|gggcccgugaaaagcccuccgggaauuc P.horikosh 2050 cgaucccccgc--g|a|CCGUACCGAGAACC(GACACA)GG|UGCCCCUG P.horikosh 2100 GG(ugagaag)CCUAA-GGCGU||GUCGGG-GGAAACCCGGCCGAGGGAA P.horikosh 2150 CUCGGCAAACUGGCCCCGUAAC(UUCG)GGAGAAGGGGU|GCCUGC---g P.horikosh 2200 ggu--------(--gcgua)-------accc--GCAGGU|C(GCA)GUGA P.horikosh 2250 CUAGGGGGGCC|CGACUGU(UUAAUAAAA)ACACAGGUCCCAG|CUAGCC P.horikosh 2300 C(GAA-A)GGGUUUGUACUGGGGCCGACGCCUGCCCAGU|GCCGGUAUGU P.horikosh 2350 GAA----gcccggg---(uaca)----accggg----UGAAGCA|CCGGU P.horikosh 2400 AAAC|GGC|GGGGGU(AACUAUA)ACCCUC|U(UAA)GGUAGCGAAAUUC P.horikosh 2450 CUU|GUCGGU(UA-----AAU)GCCGAC|CUGCAUGAAUGGCGUAACGAG P.horikosh 2500 GUCCCCGCUGUCCCCGGCCGGG-GCCCG|GCGAAACC|-UCUG--CCUGG P.horikosh 2550 (-CGCGCA-UG)CCAGGGACCCCCGGUGGGAAGCGAAGACCCCAUGG|AG P.horikosh 2600 CUUUACUGC|AGCCUGCCGUU|GCCACGCGGCGAGGGGUGCGCAGCGUAG P.horikosh 2650 GCGGGAGGCGUCG---AAGCCCGGCC(UCCG-)GGUCGGGU-GGAGCCGU P.horikosh 2700 CCAUGAGACACCGCC|CACUCCUCGCCGCGUGGCuaac-----cccc(-g P.horikosh 2750 aaa-)gggg----ggacAGCGGUAGGUGGGCAGUUUGGCUG(GGG)CGGC P.horikosh 2800 AC|GCCCCC(GAAAAGGUAUC)gggGGc|G|C|CCUAAGGUCGGC|UCAG P.horikosh 2850 GCGGG(UCAGGAA)UCCGCCGUAGA|GU(G|C-AAGG)GCAAAAGCCGGC P.horikosh 2900 CUGACUGGACCCG(uaacagagg-)CGGGUCCAGCCCC(GAAA)GGGUGG P.horikosh 2950 |CCUAGCGAACCCCUGUGC-CUC(--cccggug)GGG|GCCAGGG-auga P.horikosh 3000 c|aga--aAAGCUACCC|UGGG|GAUAACAG|AGUCGUCUCGGGCGAGA( P.horikosh 3050 GCCCAUA)UCGACCCCGAGGCUUGCUACCUCGCUGUC|GGCU|C|UCCCC P.horikosh 3100 |AUCC|UGGCCCU(GCAGCA)GGGGCCAAGGGU|GGGGG(UGUUC)ACCC P.horikosh 3150 AUUAAAGGGGAACGUGAGCUGGGUUUAGACC|GUC(GUGA)GACAGGUCG P.horikosh 3200 GAUGCUAUCU|ACCGGGGG-|UG-UUGGCCGCCU|GA|GGGGAA-GGUGC P.horikosh 3250 CCU(UAGUAC(GAGA)GGAAC)AGGGCGC|CGCGGCCUCUGGUCUACCGG P.horikosh 3300 U|UGUCC-(UCCC)-GGGCA-uaGCCGGGCA-GCUACGCCGCA-GCCGAU P.horikosh 3350 AAGGCCU(GAAGGCAUCUA)AGGCCGAAGCGGCCCCC|GAA-AAUAGGCG P.horikosh 3400 GCC|gu|ucccuggcauuugggccugg(guga-)cc-ggcccgu-agcca P.horikosh 3450 ggga--cgagg|gc|UCGGG(UAGAAGA)CCCGGUUGAUGG|GGCGG|GG P.horikosh 3500 AUGUAAGCGGGaagg---(gucaa-)---ccgaCCCGC|UUAGUCU|G|C P.horikosh 3550 CGCUCCCAaucgcccgag--|guccugucccccg---||||| CRENARCHAE 0 x~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ CRENARCHAE 150 ~~~~-~~~~~~~~~~~~~------~~~~~-~~------~~~~-~~~~~~~ CRENARCHAE 200 ~~~~~~~~~~~~~~-~~~~|~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~|~~~~~~~~--~~~~~~~-~~~ CRENARCHAE 300 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~|~(~~~-)~|~ CRENARCHAE 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|~~~~~~~~~~~~~ CRENARCHAE 400 -----(-----)-----~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~- CRENARCHAE 450 ~~~~~~~~-~~|~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~ CRENARCHAE 500 ~~~~~~~~~~~~~~---~~~~~~~~~----~|~~~~~~~~~~~~~~~~~~ CRENARCHAE 550 ~~~~~~~~~~~~~~~|-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ CRENARCHAE 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ CRENARCHAE 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|~~ CRENARCHAE 700 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ CRENARCHAE 750 --~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~ CRENARCHAE 800 ~~~~~~~~(~~~~~~~|~)~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ CRENARCHAE 850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|~--- CRENARCHAE 900 ---------------------------------~~~~~~~~~~~~~~~~~ CRENARCHAE 950 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 1000 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~-~~-~~ CRENARCHAE 1050 ~~~~~~~-|~(~~~~-)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 1100 ~~~~|~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~| CRENARCHAE 1150 ~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 1200 |~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ CRENARCHAE 1250 ~~~~~~~~~~~~~~~~~~~~~~|~~~-~~~~~~~~~~~~~-~~~~~~~~~ CRENARCHAE 1300 ~~~~-~-~~~~|~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 1350 ~~~~~~~~~~~~~~~-~~~~~|~|~|--~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 1400 ~~~~~~~~~~~~~~~|~~(~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 1450 ~~~~~~~~~~~~~~~~~~~~~~~)~~~~~~~~~~~~~~~~~~~~~~~(~~ CRENARCHAE 1500 ~~~~~~~|~~~~~~~~~~~~~~~~~~~~~~~~~~|~~~~|~~~~~~|~~~ CRENARCHAE 1550 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 1600 ~~~~~~~~~~~~~~|~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 1650 -~~~--~~|~|~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~ CRENARCHAE 1700 ~|||||~~~~~~~~~~(~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 1750 ~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~ CRENARCHAE 1800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 1850 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~ CRENARCHAE 1900 ~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 1950 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ CRENARCHAE 2000 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 2050 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 2100 ~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~-~~-~~~~~~~~~~~~~~~~ CRENARCHAE 2150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 2200 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 2250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 2300 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 2350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 2400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 2450 ~~~~~~~~~~~~~-----~~~~~~~~~~|~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 2500 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~-~~~~~ CRENARCHAE 2550 ~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 2600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 2650 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~ CRENARCHAE 2700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 2750 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 2800 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 2850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ CRENARCHAE 2900 ~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 2950 ~~~~~~~~~~~~~~~~-~~~~~~(---~~~~~~)~~~~~~~~~~~~~~~~ CRENARCHAE 3000 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 3050 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 3100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 3150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 3200 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ CRENARCHAE 3250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 3300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ CRENARCHAE 3350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ CRENARCHAE 3400 ~~~~~~~~~~~~~--------------~~~~~~~--------------~~ CRENARCHAE 3450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CRENARCHAE 3500 ~~~~~~~~~~~~~-----~~~~~~-~~~~~---~~~~~~~~~~~~~|~~~ CRENARCHAE 3550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|||| Pb.islandi 0 |~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|~~~~~~ Pb.islandi 50 |~~~~~~~|~~|~~~~~~~~~~~|~~~~(~~~~~~)~|~~~~~~~~~~~~ Pb.islandi 100 ~~~|~~~~~(~~~~~~~)~~~~~~~~~~~~~~~~~~~|~~~~~~~~~~~( Pb.islandi 150 ~~~~~)~~~|~~~~~~~~~~~~~~(~~~~~)~~~~~~~~~~~~~~~~~~~ Pb.islandi 200 ~~~~~~~(~~~~~~~~~~~~)~~~~~~~~~~~~~~~~~|~~~~~~~~~~| Pb.islandi 250 ~~(~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~(~~~~~~)~~~~~~|~ Pb.islandi 300 ~~~~~~~~~~~(~~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Pb.islandi 350 ~~~~~(~~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Pb.islandi 400 ~~~~~(~~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Pb.islandi 450 (~~~~~~)~~~~~~~~|~(~~~)~~~~~(~~~~~~~)~~~~~~~~~~~~~ Pb.islandi 500 ~~~~~~~~~~~~~~~~~~~~~~ggaucccgGAGUACCACGGCu(---uag Pb.islandi 550 uuu)uGCCGUGGGAAU-ACGCCGG(CcacugG-)CCGGCAAGGCUAAACA Pb.islandi 600 cgu-CCCGAGUCCGAUAGCGCAC-UAGUACC(GUGA)GGGAAAGCUGAAA Pb.islandi 650 AGAACCCC(g-gaa)GGGGGGUG-AAAAGAGCCUGAAACCGGGCGGCuac Pb.islandi 700 a-gug-gggcgggccc--gaaagga---ugccccuccccgaaggaaaccc Pb.islandi 750 cg(guaa-)cgggg---gaguacgag-gggaggg-gucca--ggguccgc Pb.islandi 800 ccUUACGU(CUAGAAA|C)ACGG|GCCGGGGAGUUCAC-GGCCGUGGCGA Pb.islandi 850 GCCUAAGGGG(--uucaa)ccccggAGGCGUAGG(GAAA)CCGaca-gcc Pb.islandi 900 cgcagcgggg-(gaaa)-ccccgcgaggggcggGGUCU(gaaa-)GGGCC Pb.islandi 950 CGUAGUCACGGCCGUGAGACCAGAAACCGGGCGAUCUAGCCCUGGG|CAG Pb.islandi 1000 GGUGAAGCGGGGC(GAAA)GCCCCGUGGAGGCCCGaag-ggguu-cu-ga Pb.islandi 1050 (cgugca-aa)ucgu-u|cccauGACCUGGGGCUAGGGGC(AAAAG)ACC Pb.islandi 1100 AAUCAAGCCCGG-UGAUAGCUGGUUCCCCCCGAAGCUGGU(CGCA)GCCA Pb.islandi 1150 GGC|CUCCCCGga-|ggc|-ggCCGGCG|GGGUAG|AGC-ACUGAUCGGG Pb.islandi 1200 GGugcgG|GAGCC(gaaa-)GGCUC-CG-GCCCCCGGUCAAACUCCGAAC Pb.islandi 1250 C|ugccggcgccnn-nnn|nnnnnnn-nnnnnnnnnnn-nnnnn(n-nnn Pb.islandi 1300 n)nnnn-nnnnnnnnnnnnn(nnnnnn)nnnnnnnnnn-nnnnnnnnn|n Pb.islandi 1350 nnnnnnnnnnnnnnn-------------------------nnnnnnnnnn Pb.islandi 1400 nnnnnnnnnnnnnnnGGC(CUAACACCA)GCCAUCGG|C(UAA)G|CAAC Pb.islandi 1450 GC(GUAACA)GC|GGACCCGCCGAGGC--GGGGC|CCCGAAGAUGUAGAG Pb.islandi 1500 GGACU-AAGCCCGC|C|GCCGAGACC|CCGG|gccuccggcc(guu---) Pb.islandi 1550 ggccggagaugcGGUAGGGGGG|CGCGGCCGU-GGGGCAGAAGCCGGG-C Pb.islandi 1600 C(GUGA)GGUCCGGUGG|ACCCGCGGCCGACGAAGAUCCCGGC|GGUAGU Pb.islandi 1650 AGCagcg-aaGAGGGG(UGAGAA-G)CCC-CUC|CGCCGGAAaGGACCAG Pb.islandi 1700 GGUUUCCUGGCAACU-(UCAAU)AG|GCCAGGAGUUAGC|CGG|-UCCUA Pb.islandi 1750 AGGCGGG-GCC(UAAUA)GGU--ACCCGCCGAAA-GGGAAACGGG(UUAA Pb.islandi 1800 UAUU)CCCGU|GC-cgcggggg-uagguucugcg(-guaa)cgcag-gcc Pb.islandi 1850 ccgu-ccccgacgccucgggauagggcg|ggcggg(-----ac-ugccgu Pb.islandi 1900 ------)cccgcu|-uaaccguc-gaaggcCGGGGAGUG-CC(GUAAU)G Pb.islandi 1950 G|CGAGAACCG--gccgaacggcgggaau-|agc|cgggg(--guuu)cc Pb.islandi 2000 ccgguc-cgcccgacuccug-|gggcccgugaaaaggggacggggaa--- Pb.islandi 2050 cgagcccccgc--g|C|CCGUACCGAGAACC(GACGCA)GG|UGCUCCUG Pb.islandi 2100 GG(ugagaag)CCCAA-GGCG-||GCUCGG-GUGACCCCGGGCCAGGGAA Pb.islandi 2150 CUCGGCAAAUUGGCCCCGUAAC(UUCG)GGAGAAGGGGU|GCCUGC---g Pb.islandi 2200 gccuua-ggg-(--uacac)-cccuggggcc--GCAGGU|C(GCA)GUGA Pb.islandi 2250 CAAGGGGGACC|UGACUGU(UUAACAAAA)ACAUAGGUCCCCG|CGAGCC Pb.islandi 2300 C(GUA-A)GGGUGUGUACGGGGGCUGAAUCCUGGCCACU|GGCGGUACGU Pb.islandi 2350 GAA----ccccggg---(uaca)----accggg----cGAAGCG|CCGCU Pb.islandi 2400 GAAG|GCC|GGGGGU(AACUCUG)ACCCUC|U(UAA)GGUAGCCAAAUGC Pb.islandi 2450 CUU|GCCGGG(UA-----AGU)UCCGGC|GUGGAUGAAUGGAU-AACGAG Pb.islandi 2500 GUCCCCACUGUCCCGGCCCGGG-CCC--|GCGAA-CC|-CACCUCCCAGG Pb.islandi 2550 (-UGCAC--AU)CCUGGGACCCCCGACGGGGCGAGAAGUCCCUGUGG|AG Pb.islandi 2600 CUUCACAGC|AGCCUGUCGCU|GCGGGGGGGCGGGGGGUGCAGAGCGUAG Pb.islandi 2650 GUGGGAGCGAUGA----AACGGGGUC(UCCG-)GGCUCCUG--GAU-CGG Pb.islandi 2700 UCCUGGAACACCACC|CACUCUCCGCCCCUCCGCuuac----ccgcc(-g Pb.islandi 2750 gaa-)ggcgg---ggacAGCGGCAGGCGGGCUGUUCGGCUG(GGG)CGGC Pb.islandi 2800 AC|ACCCCU(GAAAAGAUAUC)GGGGGU|G|C|CCAAAGCUCGGC|UCAG Pb.islandi 2850 GCGGG(UCAGAAA)UCCGCCGUAGA|GU(G|C-AAGG)GCAAAAGCCGGG Pb.islandi 2900 CUGACUGGGCCCU(ugaacacaa-)GGGGCCCAGGCGG(GAAA)CCGUGG Pb.islandi 2950 |CCUAGAGAACGCUCGUGC-CCC(-caccagug)GGG|GCCGGGC-auga Pb.islandi 3000 c|aga--aAAGUUACCC|CAGG|AAUAACCG|GCUCGUCGCGGGUGAGA( Pb.islandi 3050 GUCCCCA)UCGACCCCGCGGUUUGGUACCCAGACGUC|GUCU|C|UUCCC Pb.islandi 3100 |AUCC|UGGCGGU(GCAGCA)GCCGCCAAGGGU|GGGGC(UGCCC)GCCC Pb.islandi 3150 AUUAAAGGGGAACGUGAGAUGGGUUCAGACC|GUC(GCGA)GACAGGUCG Pb.islandi 3200 GUCUCUACCU|GUCGGGGG-|CG-UUGGCCGCCU|GA|GGGGAA-GGUGC Pb.islandi 3250 CCU(CAGUAC(GAGA)GGAAC)GGGGCGC|CGCGGCCUCUAGUGUACCGG Pb.islandi 3300 U|UGUCC-(GGCA)GGGGCA-cUGCCGGGCA-GCCACGCCGCG-GGGGAU Pb.islandi 3350 AACCGCU(GAAAGCAUCUA)AGCGGGAAGCCCUCCCC|GAG-ACGAGGCG Pb.islandi 3400 GCC|gu|cgcccuggggg---------(gcaa-)---------ccccugg Pb.islandi 3450 ggcg--cgagg|gc|UCCCG(UAGAAGA)CGGGGUUGAUGG|GGGGG|CG Pb.islandi 3500 GUGUAACCCCCgaggg--(uucu--)--cccgaGGGGG|-GAGCCG|G|C Pb.islandi 3550 CCCUCCCAAucgcccgagcg|ugcggggcggc-----||||| T.tenax 0 |--------------gcacg---guCAAGCCGCCCGGUGGAUG|GCUCGG T.tenax 50 |CUCGGG-|cg|cCGAGGAAGGG|CGUG(GCAAGC)U|GCGAUAAGCCCG T.tenax 100 GGG|UAGCC(GCAAGCG)GGCguu-GAACCCGGGAUU|CC-CGAAUGGG( T.tenax 150 GCUU-)CCU|accggggcc-----(gaaca)-----ggcucc-ggu-gcc T.tenax 200 cc-----(---gua--a---)------ggggcGGGAAC|GCGGGGAAAG| T.tenax 250 GA(AACA)UCUUAGUACCCGCAGGAAGAGAAACC(AA--CA)GGGA-A|C T.tenax 300 CCCUGAGUAGG(GGCGA)CCGAAAGGGGGAGAGCCCAaaccaaa-uccu- T.tenax 350 cacgg(gauga)ccgug-ggga-gaugugguguugu--ggg-cucggg-- T.tenax 400 -----(-----)-----uaccgccg-gcgggcgguagcc-GAAgugggc- T.tenax 450 (uggaau)-gccccgc|c(gua)gaGGG(UGAUAGC)CCCGUA-ggcuaa T.tenax 500 accgcccguggcgg-agucccgggaucccgGAGUACCCCGCCu(---ugg T.tenax 550 uuu)uGGCGGGGGAAG-CUGGCGG(CcacugG-)CCGCCAAGGCUAAGCA T.tenax 600 cgu-CCCGAGUCCGAUAGCGAACU-AGUACC(GUGA)GGGAAAGCUGAAA T.tenax 650 AGCACCCC(g-gaa)GGGGGGUG-AAAAGAGCCUGAAACCGGGCGGCuac T.tenax 700 a-gug-gggcgggccc--caaagga---ugcccucgcccgaaggaaaccc T.tenax 750 cg(guga-)cgggg---gaguacgag-ggcgagg-gucca--ggguccgc T.tenax 800 ccUUACGU(CUAGAAA|C)ACGG|GCCGGGGAGUUCAC-GGCCGUGGCGA T.tenax 850 GUCUAAgggg(--uuuaa)ccccguAGGCGCAGG(GAAA)CCGaca-gcc T.tenax 900 cguagccggu-(uugc)-gccggugaggggcggGGUCC(gaaa-)GGGCC T.tenax 950 UGUAGCCACGGCCGUGAGACCAGAAACCGGGCGAUCUAGCCCUGGG|CAG T.tenax 1000 GGCGAAGCGGGGC(GAAA)GCCCCGUGGAGGCCCGaaa-ggg--uucuga T.tenax 1050 (ugugca-aa)uc-guu|cccauGACCUGGGGCUAGGGGC(AAAAG)ACC T.tenax 1100 AACCAAGCCCGG-UGAUAGCUGGUUCCCCCCGAAGCGGGU(CCCA)GCCC T.tenax 1150 GGC|CUCCCUGga-|ggu|-CUCCGGCG|GGGUAG|AGC-ACUGAUCGAG T.tenax 1200 ggcgcAG|GGCCC(gaaa-)GGGUC-CG-GCCCUCGGUCAAACUCCGAAC T.tenax 1250 C|CGCCGGAACCgu-gga|AGGGGGG-AGGCGGGGCCA-GUGGG(G-UAA T.tenax 1300 G)CCUC-UGGCCCGAGACGG(GAACAA)CCGGGACCGG-GGUUAAGGC|C T.tenax 1350 CCUAAGUGCGGGCUA-AGUGuca--acgggUAAGGGCGUCCCCUGCCCAA T.tenax 1400 GACAGCGGGGCCGUGGGC(CUAACAGCA)GCCAUCGG|C(CAA)G|CAAC T.tenax 1450 GC(GUAACA)GC|GGACCCGCCGAGGCAGGGGGC|CCCGUAGAUGUAGAG T.tenax 1500 GGACUCAAGCCCGC|C|GCCGAGACC|CCGG|gccuccggcc(guu---) T.tenax 1550 ggccgga-gugcGGUAGGGGGG|CGCGGCCGU-gGGGCAGAAGCCGGG-C T.tenax 1600 C(GAGA)GGUCCGGUGG|ACCCGCGGUCGACGAAGAUCCCGGC|GGUAGU T.tenax 1650 AGCagcg-aaGAGGGG(UGAGAA-G)CCC-CUC|CGCCGGAAaGGACCAG T.tenax 1700 GUUUUCCCGGCAACU-(ACAAU)AG|GCUGGGAGUUAGC|CGG|-UCCUA T.tenax 1750 AGGCGGG-GCC(UAGCU)GGC--ACCCGCCGAAA-GGGAAACGGG(UUAA T.tenax 1800 UAUU)CCCGU|GC-cgcggggg-uagguucugcg(-gcaa)cgcag-gcc T.tenax 1850 ccgu-ccccgacgccucgggauagggcg|ggcggg(-----ac-caccgu T.tenax 1900 ------)cccguu|-uaaccgcu-gaaggcCGGGGAGUG-CC(GUAAU)G T.tenax 1950 G|CGAGAACCG--gccga-aggcgggaau-|agc|cgggg(--guuu)cc T.tenax 2000 ucgguc-cgcccgacuccug-|gggcccaugaaaaggggacggggaa--- T.tenax 2050 cgagcccucgc--g|U|CCGUACCGAGAACC(GACGCA)GG|UGUUCCUG T.tenax 2100 GG(ugaaaag)CCCAA-GGCGG||cuuggg-UUUACCCCAGGCCAGGGAA T.tenax 2150 CUCGGCAAAUUGGCCCUGUAAC(UUCG)GGAGAAGGGGU|GCCUGC---g T.tenax 2200 gucuug-ggg-(--uucac)-cccugggacc--GCAGGU|C(GCA)GUGA T.tenax 2250 CAAGGGGGACC|UGACUGU(UUAACAAAA)ACAUAGGUCCCCG|CGAGCC T.tenax 2300 C(GUA-A)GGGUUUGUACGGGGGCUGAAUCCUGGCCACU|GGCGGUACGU T.tenax 2350 GAA----ccccggg---(ucca)----accggg----cGAAGCG|CCGCU T.tenax 2400 GAAG|GCC|GGGGGU(AACUCUG)ACCCUC|U(UAA)GGUAGCCAAAUGC T.tenax 2450 CUU|GCCGGG(UA-----AGU)UCCGGC|GUGCAUGAAUGGAUCAACGAG T.tenax 2500 GUCCCCACUGUCCCGGCCUGGG-GCCCA|GCGAA-CC|-CACCU-CCAGG T.tenax 2550 (-UGCACA-GU)CCUGGGACCCCCGACGGGGCGAGAAGUCCCUGUGG|AG T.tenax 2600 CUUCACUGC|AGCCUGUCGUU|GCGGAGGGGCGGGGGGUGCAGAGCGUAG T.tenax 2650 GCAGGAGCAAUGA----AACGGGGUC(UCCG-)GGCCCCGU-GGAUGCGG T.tenax 2700 UCCUGGAACACUGCC|CACUCUCCGCCCCUCCGCuaac----ccggg(-g T.tenax 2750 caa-)cccgg---ggacAGCGGCAGGCGGGCAGUUCGGCUG(GGG)CGGC T.tenax 2800 AC|ACCCCU(GAAAAGAUAUC)GGGGGU|G|C|CCAAAGCUCGGC|UCAG T.tenax 2850 GCGGG(UCAGAAC)UCCGCCGUAGA|GU(G|U-AAGG)GCAAAAGCCGGG T.tenax 2900 CUGACUGCGCCCU(ugaacgcaa-)GGGGCGCAGGCGG(GAAA)CCGGGG T.tenax 2950 |CCUAGAGAACGCUCGUGC-CCC(-caccagug)GGG|GCCGGGC-auga T.tenax 3000 c|aga--aAAGUUACCC|CAGG|AAUAACCG|GCUCGUCGCGGGUGAGA( T.tenax 3050 GUCCCCA)UCGACCCCGCGGUUUGGUACCCAGACGUC|GUCU|C|UUCCC T.tenax 3100 |AUCC|UGGCGGU(GCAGCA)GCCGCCAAGGGU|GGGGC(UGCCC)GCCC T.tenax 3150 AUUAAAGGGGAACGUGAGAUGGGUUCAGACC|GUC(GCGA)GACAGGUCG T.tenax 3200 GUCUCUACCU|GUCGGGGG-|CG-UUGGCCGCCU|GA|GGGGAA-GGUGC T.tenax 3250 CCU(CAGUAC(GAGA)GGAAC)GGGGCGC|CGCGGCCUCUAGUCUACCGG T.tenax 3300 U|UGUCC-(GGCA)-GGGCA-cuGCCGGGCA-GCCACGCCGUA-GGGGAU T.tenax 3350 AACCGCU(GAAAGCAUCUA)AGCGGGAAGCUCCCCCC|GAG-ACGAGGCG T.tenax 3400 GCC|gu|ugcccuggggg---------(gcaa-)---------ccccugg T.tenax 3450 ggca--cgagg|gc|UCCCG(UAGAAGA)CGGGGUUGAUGG|GGGGG|CG T.tenax 3500 GUGUAACCCCCgaggg--(ucuc--)--cccgaGGGGG|-GAGCCG|G|C T.tenax 3550 CCCUCCCAaucgcccg---a|gcgu------------||||| P.occultum 0 |~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|~~~~~~ P.occultum 50 |~~~~~~~|~~|~~~~~~~~~~~|~~~~(~~~~~~)~|~~~~~~~~~~~~ P.occultum 100 ~~~|~~~~~(~~~~~~~)~~~~~~~~~~~~~~~~~~~|~~~~~~~~~~~( P.occultum 150 ~~~~~)~~~|~~~~~~~~~~~~~~(~~~~~)~~~~~~~~~~~~~~~~~~~ P.occultum 200 ~~~~~~~(~~~~~~~~~~~~)~~~~~~~~~~~~~~~~~|~~~~~~~~~~| P.occultum 250 ~~(~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~(~~~~~~)~~~~~~|~ P.occultum 300 ~~~~~~~~~~~(~~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ P.occultum 350 ~~~~~(~~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ P.occultum 400 ~~~~~(~~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ P.occultum 450 (~~~~~~)~~~~~~~~|~(~~~)~~~~~(~~~~~~~)~~~~~~~~~~~~~ P.occultum 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~(~~~~~~ P.occultum 550 ~~~)~~~~~~~~~~~~~~~~~~~~(~~~~~~~~)~~~~~~~~~~~~~~~~ P.occultum 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~(~~~~)~~~~~~~~~~~~~ P.occultum 650 ~~~~~~~~(~~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ P.occultum 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ P.occultum 750 ~~(~~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ P.occultum 800 ~~~~~~~~(~~~~~~~|~)~~~~|~~~~~~~~~~~~~~~~~~~~~~~~~~ P.occultum 850 ~~~~~~~~~~(~~~~~~~)~~~~~~~~~~~~~~~(~~~~)~~~~~~~~~~ P.occultum 900 ~~~~~~~~~~~(~~~~)~~~~~~~~~~~~~~~~~~~~~(~~~~~)~~~~~ P.occultum 950 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|~~~ P.occultum 1000 ~~~~~~~~~~~~~(~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ P.occultum 1050 (~~~~~~~~~)~~~~~~|~~~~~~~~~~~~~~~~~~~~~~(~~~~~)~~~ P.occultum 1100 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~(~~~~)~~~~ P.occultum 1150 ~~~|~~~~~~~~~~|~~~|-~~~~~~~~|~~~~~~|~~~~~~~~~~~~~~ P.occultum 1200 ~~~~~~~|~~~~~(~~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ P.occultum 1250 ~|~~~~~~~~~~~~~~~~|~~~~~~~~~~~~~~~~~~~-~~~~~(~~~~~ P.occultum 1300 ~)~~~~~~~~~~~~~~~~~~(~~~~~~)~~~~~~~~~~~~~~~~~~~~|~ P.occultum 1350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ P.occultum 1400 ~~~~~~~~~~~~~~~~~~(~~~~~~~~~)~~~~~~~~|~(~~~)~|~~~~ P.occultum 1450 ~~(~~~~~~)~~|~~~~~~~~~~~~~~~~~~~~~|~~~~~~~~~~~~~~~ P.occultum 1500 ~~~~~~~~~~~~~~|~|~~~~~~~~~|~~~~|~~~~~~~~~~(~~~~~~) P.occultum 1550 ~~~~~~~~~~~~~~~~~~~~~~|~~~~~~~~~~~~~~~~~~~~~~~~~~~ P.occultum 1600 ~(~~~~)~~~~~~~~~~|~~~~~~~~~~~~~~~GGAUCCCGGC|GGUAGU P.occultum 1650 AACAGCG-AAGAGGGG(UGAGAA-U)CCC-CUC|CGCCGGAAaGGGCCAG P.occultum 1700 GGUUCCUCGGCAACG-(GUCGU)CG|GCCGAGGGUGAGC|CGG|-CCCUA P.occultum 1750 ACCCGGG-CCG(UAACA)CGG--ACCCGGGGAAA-GGGAAACGGG(UCAA P.occultum 1800 UAUU)CCCGU|GC-cgcggggg-uagg---ugcg(-gcaa)cgcaa-gcc P.occultum 1850 ccgc-cuccgacgccuccggguaggcgg|accggg(ggcggcc-gaaggg P.occultum 1900 ccgcga)cccggc|-uaaccgcu-gaaggcCGGGGAGAG-CC(GUCAU)G P.occultum 1950 G|CGAGAACCG--gccga-aggcgggaau-|ggg|ggccc(--guua)gg P.occultum 2000 gcccuu-ccgccgaucccgg-|gggcccuugaaaagggggcggggag--- P.occultum 2050 cgaucccccgc--g|C|CCGUACCGAGAACC(GACACA)GG|UGCCCCUG P.occultum 2100 GG(ugagaag)CCCCA-GGCGU||CUGGGG-GUCAACCCGGGCCAGGGAA P.occultum 2150 CUCGGCAAAUUGGCCCCGUAAC(UUCG)GGAGAAGGGGU|GCCCGC---g P.occultum 2200 gucugg-agg-(--uaaac)-ccucuggacc--GCGGGU|C(GCA)GUGC P.occultum 2250 CUAGGGGGGCC|UGACUGU(UUAAUAAAA)ACAUAGGUCCCCG|CAAGCC P.occultum 2300 C(GAA-A)GGGUGUGUACGGGGGCCGAAUCCUGGCCACU|GGCGGUCCGU P.occultum 2350 GAA----accgggg---(uuca)----acccgg----cGAAGCG|CCGCU P.occultum 2400 GAAG|GCC|GGGAGU(AACUCUG)ACUCUC|U(UAA)GGUAGCCAAAUGC P.occultum 2450 CUU|GCCGGG(UA-----AGU)UCCGGC|GCGCAUGAAUGGAUCAACGAG P.occultum 2500 GUCCCCACUGUCCUGGCCCGGG-GCCCC|GUGAACCC|-ACGGA-GCCGG P.occultum 2550 (-UGCACA-GG)CCGGCAUCCCCCCGCAGGGCGAGAAGACCCCGUGG|AG P.occultum 2600 CUUUACCGC|AGCCUGGGGUU|GCCCUUCGGGCCUGGGUGCGUAGCGUAG P.occultum 2650 GUGGGAGCCGAUG---AGCCACCCUC(UCCG-)GGGGGUGG-GGAGGCGC P.occultum 2700 CAAUGAAACACCACC|CACCCAGGCCCGGGGGGCuuaccc--ccggc(-g P.occultum 2750 gga-)gccgg-ggggacAGCCCCAGGUGGGCGGUUUGGCUG(GGG)CGGC P.occultum 2800 AC|GCCCGC(GAAAAGGUAAC)ACGGGC|G|C|CCAAAGGUCGGC|UCAG P.occultum 2850 GCGGG(UCAGAGC)UCCGCCGUAGA|GU(G|C-AAGG)GCAAAAGCCGGC P.occultum 2900 CUGACCGGACCCC(gaacagcaa-)GGGGUCCGGCCGG(GAAA)CCGCGG P.occultum 2950 |CCUAGCGAACGCUCGUGC-CCC(-ccucggug)GGG|GCCGGGC-auga P.occultum 3000 c|aga--aAAGUUACCC|CGGG|GAUAACAG|AGUCGUCGCGGGCGAGA( P.occultum 3050 GCUCACA)UCGACCCCGCGGUUUGCUACAUCGAUGUC|GGCU|C|UUCCC P.occultum 3100 |AUCC|UGGGGGU(GCAGCA)GCCCCCAAGGGU|GGGGC(UGCCC)GCCC P.occultum 3150 AUUAAAGGGGAACGUGAGCUGGGUUUAGACC|GUC(GUGA)GACAGGUCG P.occultum 3200 GACUCUACCC|GCGGGGGG-|UG-UGGGCCGCCU|GA|GGGGAA-GGUGC P.occultum 3250 CCC(UAGUAC(GAGA)GGAAC)GGGGCGC|CGCGGCCUCUAGUGUACCGG P.occultum 3300 U|UGUCC-(GGCA)-GGGCA-gcGCCGGGCA-GCCACGCCGUA-GGGGGU P.occultum 3350 AACCGCU(GAAAGCAUCUA)AGCGGGAACCCCUCCCC|GAA-AAGAGGCG P.occultum 3400 GCC|gc|ccggccucc-----------(ucu--)-----------ggggg P.occultum 3450 ccggg-cccgg|gc|UCCCG(UAGAAGA)CGGGGUUGAUGG|GGCGG|GG P.occultum 3500 GUGUAAGCCCCgagggcc(uuag--)ggcccgaGGGGU|UGAGCCC|G|C P.occultum 3550 CGCUCCCAaucgcccggaac|gccgugggcuu-----||||| A.pern.OH2 0 |-------gcgggccuacggca-ccuaugccgCCCGGGGGAUG|GCUCGG A.pern.OH2 50 |CUCGGG-|cg|CCGAGGAAGGG|CGUG(GCAAGC)U|GCGAUAAGCCCG A.pern.OH2 100 GGG|UAGGC(GCAGGCA)GCCGUC-GAACCCGGGAUC|CC-CGAAUGGG( A.pern.OH2 150 ACUU-)CCC|gcugcgggc-----(gaaga)-----gcccgc-agc-gcc A.pern.OH2 200 ccc----(---guuu-----)-----gggggcGGGAAC|CCCCCGAAAG| A.pern.OH2 250 GA(AGCA)UCUGAGUAGGGGGAGGAGAAGAAACC(AA--CA)GGGA-U|C A.pern.OH2 300 CCCUGAGUAGG(GGCGA)CCGAAAGGGGGAGAGCCCAaaccaau-cccc- A.pern.OH2 350 cacgg(gagga)ccgug-gggg-gaugagggguugc-ggcccugcggcu- A.pern.OH2 400 ggggc(uucga)gccccggcgggccgacccacgguagcc-GAAgugggc- A.pern.OH2 450 (uggaau)-gccccgc|c(gua)gaGGG(UGAUAGC)CCCGUA-ggcgaa A.pern.OH2 500 accgugggggcccg---ugccgcag-ggcaGAGUACCACGGCU(---ugg A.pern.OH2 550 uau)UGCCGUGGGAAG-CUGGGAG(GaaccgA-)CUUCCAAGGCUAAAUA A.pern.OH2 600 cgu-CCCGAGACCGAUAGCGAACUAAGUACC(GUGA)GGGAAAGCUGAAA A.pern.OH2 650 AGAACCCC(g-gga)GGGGGGUG-AAAAGAGCCUGAAACCGGGCGGCgac A.pern.OH2 700 a-uac-ggugcggccc--gaaaggg--gugaaa-cccccgaaggaaaccc A.pern.OH2 750 gg(gcga-)ccggg---gaguacgag-ggggaug-gaccg--gggucgca A.pern.OH2 800 ccGUCCGU(CUUGAAA|C)ACGG|GCCGGGGAGUUCAC-GGCCGUGGCGA A.pern.OH2 850 GCUUAAgggg(--gucaa)ccccguAGGCGCAGG(GAAA)CCGacaggcc A.pern.OH2 900 cgcagccgggg(gcga)ccccggcgaggggcggGGUCC(uaaua)GGGCC A.pern.OH2 950 CGGAGUCACGGCCGUGAGACCAGAAACCGGGCGAUCUAGGCGGGGG|CAG A.pern.OH2 1000 GGCGAAGCCGGGG(GAAA)CCCCGGUGGAGGCCCGcaa-ggg--ugcuga A.pern.OH2 1050 (cgugca-aa)uc-gcu|ccccuGACCCCCGUCUAGGGGU(GAAAG)GCC A.pern.OH2 1100 AAUCUAGCCCGGaaGAUAGCUGGUUCCCGCCGAAGUGGCU(CGCA)GGCC A.pern.OH2 1150 AGC|CCCGCCgga-|ggc|cggGCCGUG|GGGUAG|AGcuacUGAUUGGG A.pern.OH2 1200 CGUgcaG|GGGGC(guaaa)GCCCC-CG-GCGCCCAGUCAAACUCCGAAC A.pern.OH2 1250 C|UGCGGCCGCCgu-aga|UGGCGGG-AGUGGGGUUCC-CCGGG(G-UAA A.pern.OH2 1300 G)CCCG-GGGGCCGAGAGGG(GAACAA)CCCAGACCGG-GGUUAAGGC|C A.pern.OH2 1350 CCUAAGUGCCGGCUA-AGUGcca---agccAAAGGGCGUCCCCCGCCUAA A.pern.OH2 1400 GACAGCGGGGAGGUGGGC(CUAACAGCA)GCCAUCCU|C(UAA)G|GAGU A.pern.OH2 1450 GC(GUAACA)GC|UCACCCGCCGAGGCGGGGGGC|CCCGAAGAUUGGUCG A.pern.OH2 1500 GGGCUUAAGCCGGC|C|GCCGAGACC|CCGG|gccgcggcuc(cgaug-) A.pern.OH2 1550 gagccgcg-ugcGGUAGGCGGG|CGUCGGGGU-GGCGUAGAAGCCGGG-C A.pern.OH2 1600 C(GCGA)GGUCCGGUGG|AGCCGCCCCGAGCGCGGAUCCCGGC|GGUAGU A.pern.OH2 1650 AACagcg-aaGCGGGG(UGAGAA-U)CCC-CGC|CGCCGGAAaGGGCAAG A.pern.OH2 1700 GGUUCCCCGGCAAUG-(GUCGU)CA|GCCGGGGGUCAGC|CGG|-UCCUA A.pern.OH2 1750 ACCGGGA-CCG(UAACA)CGG--AUCCCGGGAAG-GGGAAACGGG(UUAA A.pern.OH2 1800 CAUU)CCCGU|GC-cgcggggg-uacgcuucgcg(-gcaa)cgcaaggcc A.pern.OH2 1850 ccac-ccccgacgccucgggguaggcgg|accggg(ggccccc-uuaggg A.pern.OH2 1900 gggcga)cccggc|-uaaccugccgaaggcCGGGGAGUG-CC(GUAAC)G A.pern.OH2 1950 G|CGAGAACCG--gccga-aggggggaau-|ggc|ccgcc(--uaug)-g A.pern.OH2 2000 cggguu-ccgccgaccccug-|gggcccuugaaaaggggguggggaa--- A.pern.OH2 2050 ggaucccccgc--g|C|CCGUACCGAGAACC(GACACA)GG|UGCCCCUG A.pern.OH2 2100 GG(ugagcag)CCCAA-GGCGU||CUGGGG-GCUAACCCGGGCCAGGGAA A.pern.OH2 2150 CUCGGCAAAUUGGCCCCGUAAC(UUCG)GGAGAAGGGGU|GCCUGC---g A.pern.OH2 2200 guccug-ggg-(-cucgaa)-cccugggacc--GCAGGU|C(GCA)GUGC A.pern.OH2 2250 CUAGGGGGGCC|UGACUGU(UUAACAAAA)ACAUAGCUCCCCG|CUAGCC A.pern.OH2 2300 C(GAAAA)GGGUGUGUACGGGGGGUGAGCCCUGGCCACU|GGCGGUCCGU A.pern.OH2 2350 GAA----accgggg---(uaca)----acccgg----cGAAGCG|CCGCU A.pern.OH2 2400 GAAG|GCC|GGGAGU(AACCCUG)ACUCUC|U(UAA)GGUAGCCAAAUGC A.pern.OH2 2450 CUU|GCCGGG(UA-----AGU)UCCGGC|GCGCAUGAACGGGUCAACGAG A.pern.OH2 2500 GUCCCCACUGUCCUGGCCCGGG-GCCCC|GUGAACCC|-CCUGA-GCCGA A.pern.OH2 2550 (-UGCACA-GU)CCGGCAUCCCCCCGCAGGGAGAGAAGACCCCGUGG|AG A.pern.OH2 2600 CUUUACCGC|AGCCCGGCGUU|GGcccccgggcggggguGCGUAGCGUAG A.pern.OH2 2650 GUGGGAGCCGAUG---AGCCACCCUC(UCCG-)GGGGGUGG-GGAGGCGU A.pern.OH2 2700 CCCUGAAACACCACC|CCCGCCCGGGGCCUUACCCCGC-----cccg(gg A.pern.OH2 2750 uggg)cggg----ggacagCGUCGGGUGGGCGGUUUGGCUG(GGG)CGGC A.pern.OH2 2800 AC|GCCCGC(GAAAGGGUAAC)ACGGGC|G|C|CCAAAGGUCGGC|UCAG A.pern.OH2 2850 GCGGG(UCAGAAC)UCCGCCGUAGA|GU(G|C-AAGG)GCAAAAGCCGGC A.pern.OH2 2900 CUGACCGGACCCC(ugaaagcaa-)GGGGUCCGGCCGG(GAAA)CCGUGG A.pern.OH2 2950 |CCUAGCGCACGCUCGUGC-CCC(--cucggug)GGG|GCCGGGC-acga A.pern.OH2 3000 c|aga--aAAGUUACCC|CGGG|GAUAACAG|AGUCGUCGCGGGCGAGA( A.pern.OH2 3050 GCCCCCA)UCGACCCCGCGGUUUGCUACCUCGAUGUC|GGCU|C|UUCCC A.pern.OH2 3100 |AUCC|UGGGGGU(GCAGCA)GCCCCCAAGGGU|GGGGC(UGCCC)GCCC A.pern.OH2 3150 AUUAAAGGGGAACGUGAGCUGGGUUCAGACC|GUC(GUGA)GACAGGUCG A.pern.OH2 3200 GUCUCUACCC|GCGGGGGG-|UG-uGGGCCGCCU|GA|GGGGAA-GGUGC A.pern.OH2 3250 CCU(UAGUAC(GAGA)GGAAC)GGGGCGC|CGCGGCCUCUGGUGUACCGG A.pern.OH2 3300 U|UGUCC-(UGGU)-GGGCA-acGCCGGGCA-GCUAAGCCGUA-GGGGGU A.pern.OH2 3350 AACCGCU(GAAAGCAUCUA)AGCGGGAACCCCUCCCC|GAA-AAGAGGCG A.pern.OH2 3400 GCC|gu|ugggcgccggc---------(cuggu)---------gccggcg A.pern.OH2 3450 ucca--cgagg|gc|UCCCG(UAGAAGA)CGGGGUUGAUGG|GGCGG|GG A.pern.OH2 3500 GUGUGAGCCCCgaggggg(cuuag-)cccucgaGGGGU|GUAGCCC|G|C A.pern.OH2 3550 CGCUCCCAaucgcccgag--|gccg------------||||| A.pern.K1 0 |-------gcgggccuacggca-ccuaugccgCCCGGGGGAUG|GCUCGG A.pern.K1 50 |CUCGGG-|cg|CCGAGGAAGGG|CGUG(GCAAGC)U|GCGAUAAGCCCG A.pern.K1 100 GGG|UAGGC(GCAGGCA)GCCGUC-GAACCCGGGAUC|CC-CGAAUGGG( A.pern.K1 150 ACUU-)CCC|gcugcgggc-----(gaaga)-----gcccgc-agc-gcc A.pern.K1 200 ccc----(---guuu-----)-----gggggcGGGAAC|CCCCCGAAAG| A.pern.K1 250 GA(AGCA)UCUGAGUAGGGGGAGGAGAAGAAACC(AA--CA)GGGA-U|C A.pern.K1 300 CCCUGAGUAGG(GGCGA)CCGAAAGGGGGAGAGCCCAaaccaau-cccc- A.pern.K1 350 cacgg(gagga)ccgug-gggg-gaugagggguugc-ggcccugcggcu- A.pern.K1 400 ggggc(uucga)gccccggcgggccgacccacgguagcc-GAAgugggc- A.pern.K1 450 (uggaau)-gccccgc|c(gua)gaGGG(UGAUAGC)CCCGUA-ggcgaa A.pern.K1 500 accgugggggcccg---ugccgcag-ggcaGAGUACCACGGCU(---ugg A.pern.K1 550 uau)UGCCGUGGGAAG-CUGGGAG(GaaccgA-)CUUCCAAGGCUAAAUA A.pern.K1 600 cgu-CCCGAGACCGAUAGCGAACUAAGUACC(GUGA)GGGAAAGCUGAAA A.pern.K1 650 AGAACCCC(g-gga)GGGGGGUG-AAAAGAGCCUGAAACCGGGCGGCgac A.pern.K1 700 a-uac-ggugcggccc--gaaaggg--gugaaa-cccccgaaggaaaccc A.pern.K1 750 gg(gcga-)ccggg---gaguacgag-ggggaug-gaccg--gggucgca A.pern.K1 800 ccGUCCGU(CUUGAAA|C)ACGG|GCCGGGGAGUUCAC-GGCCGUGGCGA A.pern.K1 850 GCUUAAgggg(--gucaa)ccccguAGGCGCAGG(GAAA)CCGacaggcc A.pern.K1 900 cgcagccgggg(gcga)ccccggcgaggggcggGGUCC(uaaua)GGGCC A.pern.K1 950 CGGAGUCACGGCCGUGAGACCAGAAACCGGGCGAUCUAGGCGGGGG|CAG A.pern.K1 1000 GGCGAAGCCGGGG(GAAA)CCCCGGUGGAGGCCCGcaa-ggg--ugcuga A.pern.K1 1050 (cgugca-aa)uc-gcu|ccccuGACCCCCGUCUAGGGGU(GAAAG)GCC A.pern.K1 1100 AAUCUAGCCCGGaaGAUAGCUGGUUCCCGCCGAAGUGGCU(CGCA)GGCC A.pern.K1 1150 AGC|CCCGCCgga-|ggc|cggGCCGUG|GGGUAG|AGcuacUGAUUGGG A.pern.K1 1200 CGUgcaG|GGGGC(guaaa)GCCCC-CG-GCGCCCAGUCAAACUCCGAAC A.pern.K1 1250 C|UGCGGCCGCCgu-aga|UGGCGGG-AGUGGGGUUCC-CCGGG(G-UAA A.pern.K1 1300 G)CCCG-GGGGCCGAGAGGG(GAACAA)CCCAGACCGG-GGUUAAGGC|C A.pern.K1 1350 CCUAAGUGCCGGCUA-AGUGcca---agccAAAGGGCGUCCCCCGCCUAA A.pern.K1 1400 GACAGCGGGGAGGUGGGC(CUAACAGCA)GCCAUCCU|C(UAA)G|GAGU A.pern.K1 1450 GC(GUAACA)GC|UCACCCGCCGAGGCGGGGGGC|CCCGAAGAUUGGUCG A.pern.K1 1500 GGGCUUAAGCCGGC|C|GCCGAGACC|CCGG|gccgcggcuc(cgaug-) A.pern.K1 1550 gagccgcg-ugcGGUAGGCGGG|CGUCGGGGU-GGCGUAGAAGCCGGG-C A.pern.K1 1600 C(GCGA)GGUCCGGUGG|AGCCGCCCCGAGCGCGGAUCCCGGC|GGUAGU A.pern.K1 1650 AACagcg-aaGCGGGG(UGAGAA-U)CCC-CGC|CGCCGGAAaGGGCAAG A.pern.K1 1700 GGUUCCCCGGCAAUG-(GUCGU)CA|GCCGGGGGUCAGC|CGG|-UCCUA A.pern.K1 1750 ACCGGGA-CCG(UAACA)CGG--AUCCCGGGAAG-GGGAAACGGG(UUAA A.pern.K1 1800 CAUU)CCCGU|GC-cgcggggg-uacgcuucgcg(-gcaa)cgcaaggcc A.pern.K1 1850 ccac-ccccgacgccucgggguaggcgg|accggg(ggccccc-uuaggg A.pern.K1 1900 gggcga)cccggc|-uaaccugccgaaggcCGGGGAGUG-CC(GUAAC)G A.pern.K1 1950 G|CGAGAACCG--gccga-aggggggaau-|ggc|ccgcc(--uaug)-g A.pern.K1 2000 cggguu-ccgccgaccccug-|gggcccuugaaaaggggguggggaa--- A.pern.K1 2050 ggaucccccgc--g|C|CCGUACCGAGAACC(GACACA)GG|UGCCCCUG A.pern.K1 2100 GG(ugagcag)CCCAA-GGCGU||CUGGGG-GCUAACCCGGGCCAGGGAA A.pern.K1 2150 CUCGGCAAAUUGGCCCCGUAAC(UUCG)GGAGAAGGGGU|GCCUGC---g A.pern.K1 2200 guccug-ggg-(-cucgaa)-cccugggacc--GCAGGU|C(GCA)GUGC A.pern.K1 2250 CUAGGGGGGCC|UGACUGU(UUAACAAAA)ACAUAGCUCCCCG|CUAGCC A.pern.K1 2300 C(GAAAA)GGGUGUGUACGGGGGGUGAGCCCUGGCCACU|GGCGGUCCGU A.pern.K1 2350 GAA----accgggg---(uaca)----acccgg----cGAAGCG|CCGCU A.pern.K1 2400 GAAG|GCC|GGGAGU(AACCCUG)ACUCUC|U(UAA)GGUAGCCAAAUGC A.pern.K1 2450 CUU|GCCGGG(UA-----AGU)UCCGGC|GCGCAUGAACGGGUCAACGAG A.pern.K1 2500 GUCCCCACUGUCCUGGCCCGGG-GCCCC|GUGAACCC|-CCUGA-GCCGA A.pern.K1 2550 (-UGCACA-GU)CCGGCAUCCCCCCGCAGGGAGAGAAGACCCCGUGG|AG A.pern.K1 2600 CUUUACCGC|AGCCCGGCGUU|GGcccccgggcggggguGCGUAGCGUAG A.pern.K1 2650 GUGGGAGCCGAUG---AGCCACCCUC(UCCG-)GGGGGUGG-GGAGGCGU A.pern.K1 2700 CCCUGAAACACCACC|CCCGCCCGGGGCCUUACCCCGC-----cccg(gg A.pern.K1 2750 uggg)cggg----ggacagCGUCGGGUGGGCGGUUUGGCUG(GGG)CGGC A.pern.K1 2800 AC|GCCCGC(GAAAGGGUAAC)ACGGGC|G|C|CCAAAGGUCGGC|UCAG A.pern.K1 2850 GCGGG(UCAGAAC)UCCGCCGUAGA|GU(G|C-AAGG)GCAAAAGCCGGC A.pern.K1 2900 CUGACCGGACCCC(ugaaagcaa-)GGGGUCCGGCCGG(GAAA)CCGUGG A.pern.K1 2950 |CCUAGCGCACGCUCGUGC-CCC(--cucggug)GGG|GCCGGGC-acga A.pern.K1 3000 c|aga--aAAGUUACCC|CGGG|GAUAACAG|AGUCGUCGCGGGCGAGA( A.pern.K1 3050 GCCCCCA)UCGACCCCGCGGUUUGCUACCUCGAUGUC|GGCU|C|UUCCC A.pern.K1 3100 |AUCC|UGGGGGU(GCAGCA)GCCCCCAAGGGU|GGGGC(UGCCC)GCCC A.pern.K1 3150 AUUAAAGGGGAACGUGAGCUGGGUUCAGACC|GUC(GUGA)GACAGGUCG A.pern.K1 3200 GUCUCUACCC|GCGGGGGG-|UG-uGGGCCGCCU|GA|GGGGAA-GGUGC A.pern.K1 3250 CCU(UAGUAC(GAGA)GGAAC)GGGGCGC|CGCGGCCUCUGGUGUACCGG A.pern.K1 3300 U|UGUCC-(UGGU)-GGGCA-acGCCGGGCA-GCUAAGCCGUA-GGGGGU A.pern.K1 3350 AACCGCU(GAAAGCAUCUA)AGCGGGAACCCCUCCCC|GAA-AAGAGGCG A.pern.K1 3400 GCC|gu|ugggcgccggc---------(cuggu)---------gccggcg A.pern.K1 3450 ucca--cgagg|gc|UCCCG(UAGAAGA)CGGGGUUGAUGG|GGCGG|GG A.pern.K1 3500 GUGUGAGCCCCgaggggg(cuuag-)cccucgaGGGGU|GUAGCCC|G|C A.pern.K1 3550 CGCUCCCAaucgcccgag--|gccg-uaggcugcu--||||| A.pern.TB1 0 |-------gcgggccuacggca-ccuaugccgCCCGGGGGAUG|GCUCGG A.pern.TB1 50 |CUCGGG-|cg|CCGAGGAAGGG|CGUG(GCAAGC)U|GCGAUAAGCCCG A.pern.TB1 100 GGG|UAGGC(GCAGGCA)GCCGUC-GAACCCGGGAUC|CC-CGAAUGGG( A.pern.TB1 150 ACUU-)CCC|gcugcgggc-----(gaaga)-----gcccgc-agc-gcc A.pern.TB1 200 ccc----(---guuu-----)-----gggggcGGGAAC|CCCCCGAAAG| A.pern.TB1 250 GA(AGCA)UCUGAGUAGGGGGAGGAGAAGAAACC(AA--CA)GGGA-U|C A.pern.TB1 300 CCCUGAGUAGG(GGCGA)CCGAAAGGGGGAGAGCCCAaaccaau-cccc- A.pern.TB1 350 cacgg(gagga)ccgug-gggg-gaugagggguugc-ggcccugcggcu- A.pern.TB1 400 ggggc(uucga)gccccggcgggccgacccacgguagcc-GAAgugggc- A.pern.TB1 450 (uggaau)-gccccgc|c(gua)gaGGG(UGAUAGC)CCCGUA-ggcgaa A.pern.TB1 500 accgugggggcccg---ugccgcag-ggcaGAGUACCACGGCU(---ugg A.pern.TB1 550 uau)UGCCGUGGGAAG-CUGGGAG(GaaccgA-)CUUCCAAGGCUAAAUA A.pern.TB1 600 cgu-CCCGAGACCGAUAGCGAACUAAGUACC(GUGA)GGGAAAGCUGAAA A.pern.TB1 650 AGAACCCC(g-gga)GGGGGGUG-AAAAGAGCCUGAAACCGGGCGGCgac A.pern.TB1 700 a-uac-ggugcggccc--gaaaggg--gugaaa-cccccgaaggaaaccc A.pern.TB1 750 gg(gcga-)ccggg---gaguacgag-ggggaug-gaccg--gggucgca A.pern.TB1 800 ccGUCCGU(CUUGAAA|C)ACGG|GCCGGGGAGUUCAC-GGCCGUGGCGA A.pern.TB1 850 GCUUAAgggg(--gucaa)ccccguAGGCGCAGG(GAAA)CCGacaggcc A.pern.TB1 900 cgcagccgggg(gcga)ccccggcgaggggcggGGUCC(uaaua)GGGCC A.pern.TB1 950 CGGAGUCACGGCCGUGAGACCAGAAACCGGGCGAUCUAGGCGGGGG|CAG A.pern.TB1 1000 GGCGAAGCCGGGG(GAAA)CCCCGGUGGAGGCCCGcaa-ggg--ugcuga A.pern.TB1 1050 (cgugca-aa)uc-gcu|ccccuGACCCCCGUCUAGGGGU(GAAAG)GCC A.pern.TB1 1100 AAUCUAGCCCGGaaGAUAGCUGGUUCCCGCCGAAGUGGCU(CGCA)GGCC A.pern.TB1 1150 AGC|CCCGCCgga-|ggc|cggGCCGUG|GGGUAG|AGcuacUGAUUGGG A.pern.TB1 1200 CGUgcaG|GGGGC(guaaa)GCCCC-CG-GCGCCCAGUCAAACUCCGAAC A.pern.TB1 1250 C|UGCGGCCGCCgu-aga|UGGCGGG-AGUGGGGUUCC-CCGGG(G-UAA A.pern.TB1 1300 G)CCCG-GGGGCCGAGAGGG(GAACAA)CCCAGACCGG-GGUUAAGGC|C A.pern.TB1 1350 CCUAAGUGCCGGCUA-AGUGcca---agccAAAGGGCGUCCCCCGCCUAA A.pern.TB1 1400 GACAGCGGGGAGGUGGGC(CUAACAGCA)GCCAUCCU|C(UAA)G|GAGU A.pern.TB1 1450 GC(GUAACA)GC|UCACCCGCCGAGGCGGGGGGC|CCCGAAGAUUGGUCG A.pern.TB1 1500 GGGCUUAAGCCGGC|C|GCCGAGACC|CCGG|gccgcggcuc(cgaug-) A.pern.TB1 1550 gagccgcg-ugcGGUAGGCGGG|CGUCGGGGU-GGCGUAGAAGCCGGG-C A.pern.TB1 1600 C(GCGA)GGUCCGGUGG|AGCCGCCCCGAGCGCGGAUCCCGGC|GGUAGU A.pern.TB1 1650 AACagcg-aaGCGGGG(UGAGAA-U)CCC-CGC|CGCCGGAAaGGGCAAG A.pern.TB1 1700 GGUUCCCCGGCAAUG-(GUCGU)CA|GCCGGGGGUCAGC|CGG|-UCCUA A.pern.TB1 1750 ACCGGGA-CCG(UAACA)CGG--AUCCCGGGAAG-GGGAAACGGG(UUAA A.pern.TB1 1800 CAUU)CCCGU|GC-cgcggggg-uacgcuucgcg(-gcaa)cgcaaggcc A.pern.TB1 1850 ccac-ccccgacgccucgggguaggcgg|accggg(ggccccc-uuaggg A.pern.TB1 1900 gggcga)cccggc|-uaaccugccgaaggcCGGGGAGUG-CC(GUAAC)G A.pern.TB1 1950 G|CGAGAACCG--gccga-aggggggaau-|ggc|ccgcc(--uaug)-g A.pern.TB1 2000 cggguu-ccgccgaccccug-|gggcccuugaaaaggggguggggaa--- A.pern.TB1 2050 ggaucccccgc--g|C|CCGUACCGAGAACC(GACACA)GG|UGCCCCUG A.pern.TB1 2100 GG(ugagcag)CCCAA-GGCGU||CUGGGG-GCUAACCCGGGCCAGGGAA A.pern.TB1 2150 CUCGGCAAAUUGGCCCCGUAAC(UUCG)GGAGAAGGGGU|GCCUGC---g A.pern.TB1 2200 guccug-ggg-(-cucgaa)-cccugggacc--GCAGGU|C(GCA)GUGC A.pern.TB1 2250 CUAGGGGGGCC|UGACUGU(UUAACAAAA)ACAUAGCUCCCCG|CUAGCC A.pern.TB1 2300 C(GAAAA)GGGUGUGUACGGGGGGUGAGCCCUGGCCACU|GGCGGUCCGU A.pern.TB1 2350 GAA----accgggg---(uaca)----acccgg----cGAAGCG|CCGCU A.pern.TB1 2400 GAAG|GCC|GGGAGU(AACCCUG)ACUCUC|U(UAA)GGUAGCCAAAUGC A.pern.TB1 2450 CUU|GCCGGG(UA-----AGU)UCCGGC|GCGCAUGAACGGGUCAACGAG A.pern.TB1 2500 GUCCCCACUGUCCUGGCCCGGG-GCCCC|GUGAACCC|-CCUGA-GCCGA A.pern.TB1 2550 (-UGCACA-GU)CCGGCAUCCCCCCGCAGGGAGAGAAGACCCCGUGG|AG A.pern.TB1 2600 CUUUACCGC|AGCCCGGCGUU|GGcccccgggcggggguGCGUAGCGUAG A.pern.TB1 2650 GUGGGAGCCGAUG---AGCCACCCUC(UCCG-)GGGGGUGG-GGAGGCGU A.pern.TB1 2700 CCCUGAAACACCACC|CCCGCCCGGGGCCUUACCCCGC-----cccg(gg A.pern.TB1 2750 uggg)cggg----ggacagCGUCGGGUGGGCGGUUUGGCUG(GGG)CGGC A.pern.TB1 2800 AC|GCCCGC(GAAAGGGUAAC)ACGGGC|G|C|CCAAAGGUCGGC|UCAG A.pern.TB1 2850 GCGGG(UCAGAAC)UCCGCCGUAGA|GU(G|C-AAGG)GCAAAAGCCGGC A.pern.TB1 2900 CUGACCGGACCCC(ugaaagcaa-)GGGGUCCGGCCGG(GAAA)CCGUGG A.pern.TB1 2950 |CCUAGCGCACGCUCGUGC-CCC(--cucggug)GGG|GCCGGGC-acga A.pern.TB1 3000 c|aga--aAAGUUACCC|CGGG|GAUAACAG|AGUCGUCGCGGGCGAGA( A.pern.TB1 3050 GCCCCCA)UCGACCCCGCGGUUUGCUACCUCGAUGUC|GGCU|C|UUCCC A.pern.TB1 3100 |AUCC|UGGGGGU(GCAGCA)GCCCCCAAGGGU|GGGGC(UGCCC)GCCC A.pern.TB1 3150 AUUAAAGGGGAACGUGAGCUGGGUUCAGACC|GUC(GUGA)GACAGGUCG A.pern.TB1 3200 GUCUCUACCC|GCGGGGGG-|UG-uGGGCCGCCU|GA|GGGGAA-GGUGC A.pern.TB1 3250 CCU(UAGUAC(GAGA)GGAAC)GGGGCGC|CGCGGCCUCUGGUGUACCGG A.pern.TB1 3300 U|UGUCC-(UGGU)-GGGCA-acGCCGGGCA-GCUAAGCCGUA-GGGGGU A.pern.TB1 3350 AACCGCU(GAAAGCAUCUA)AGCGGGAACCCCUCCCC|GAA-AAGAGGCG A.pern.TB1 3400 GCC|gu|ugggcgccggc---------(cuggu)---------gccggcg A.pern.TB1 3450 ucca--cgagg|gc|UCCCG(UAGAAGA)CGGGGUUGAUGG|GGCGG|GG A.pern.TB1 3500 GUGUGAGCCCCgaggggg(cuuag-)cccucgaGGGGU|GUAGCCC|G|C A.pern.TB1 3550 CGCUCCCAaucgcccgag--|gccg------------||||| A.pern.TB7 0 |-------gcgggccuacggca-ccuaugccgCCCGGGGGAUG|GCUCGG A.pern.TB7 50 |CUCGGG-|cg|CCGAGGAAGGG|CGUG(GCAAGC)U|GCGAUAAGCCCG A.pern.TB7 100 GGG|UAGGC(GCAGGCA)GCCGUC-GAACCCGGGAUC|CC-CGAAUGGG( A.pern.TB7 150 ACUU-)CCC|gcugcgggc-----(gaaga)-----gcccgc-agc-gcc A.pern.TB7 200 ccc----(---guuu-----)-----gggggcGGGAAC|CCCCCGAAAG| A.pern.TB7 250 GA(AGCA)UCUGAGUAGGGGGAGGAGAAGAAACC(AA--CA)GGGA-U|C A.pern.TB7 300 CCCUGAGUAGG(GGCGA)CCGAAAGGGGGAGAGCCCAaaccaau-cccc- A.pern.TB7 350 cacgg(gagga)ccgug-gggg-gaugagggguugc-ggcccugcggcu- A.pern.TB7 400 ggggc(uucga)gccccggcgggccgacccacgguagcc-GAAgugggc- A.pern.TB7 450 (uggaau)-gccccgc|c(gua)gaGGG(UGAUAGC)CCCGUA-ggcgaa A.pern.TB7 500 accgugggggcccg---ugccgcag-ggcaGAGUACCACGGCU(---ugg A.pern.TB7 550 uau)UGCCGUGGGAAG-CUGGGAG(GaaccgA-)CUUCCAAGGCUAAAUA A.pern.TB7 600 cgu-CCCGAGACCGAUAGCGAACUAAGUACC(GUGA)GGGAAAGCUGAAA A.pern.TB7 650 AGAACCCC(g-gga)GGGGGGUG-AAAAGAGCCUGAAACCGGGCGGCgac A.pern.TB7 700 a-uac-ggugcggccc--gaaaggg--gugaaa-cccccgaaggaaaccc A.pern.TB7 750 gg(gcga-)ccggg---gaguacgag-ggggaug-gaccg--gggucgca A.pern.TB7 800 ccGUCCGU(CUUGAAA|C)ACGG|GCCGGGGAGUUCAC-GGCCGUGGCGA A.pern.TB7 850 GCUUAAgggg(--gucaa)ccccguAGGCGCAGG(GAAA)CCGacaggcc A.pern.TB7 900 cgcagccgggg(gcga)ccccggcgaggggcggGGUCC(uaaua)GGGCC A.pern.TB7 950 CGGAGUCACGGCCGUGAGACCAGAAACCGGGCGAUCUAGGCGGGGG|CAG A.pern.TB7 1000 GGCGAAGCCGGGG(GAAA)CCCCGGUGGAGGCCCGcaa-ggg--ugcuga A.pern.TB7 1050 (cgugca-aa)uc-gcu|ccccuGACCCCCGUCUAGGGGU(GAAAG)GCC A.pern.TB7 1100 AAUCUAGCCCGGaaGAUAGCUGGUUCCCGCCGAAGUGGCU(CGCA)GGCC A.pern.TB7 1150 AGC|CCCGCCgga-|ggc|cggGCCGUG|GGGUAG|AGcuacUGAUUGGG A.pern.TB7 1200 CGUgcaG|GGGGC(guaaa)GCCCC-CG-GCGCCCAGUCAAACUCCGAAC A.pern.TB7 1250 C|UGCGGCCGCCgu-aga|UGGCGGG-AGUGGGGUUCC-CCGGG(G-UAA A.pern.TB7 1300 G)CCCG-GGGGCCGAGAGGG(GAACAA)CCCAGACCGG-GGUUAAGGC|C A.pern.TB7 1350 CCUAAGUGCCGGCUA-AGUGcca---agccAAAGGGCGUCCCCCGCCUAA A.pern.TB7 1400 GACAGCGGGGAGGUGGGC(CUAACAGCA)GCCAUCCU|C(UAA)G|GAGU A.pern.TB7 1450 GC(GUAACA)GC|UCACCCGCCGAGGCGGGGGGC|CCCGAAGAUUGGUCG A.pern.TB7 1500 GGGCUUAAGCCGGC|C|GCCGAGACC|CCGG|gccgcggcuc(cgaug-) A.pern.TB7 1550 gagccgcg-ugcGGUAGGCGGG|CGUCGGGGU-GGCGUAGAAGCCGGG-C A.pern.TB7 1600 C(GCGA)GGUCCGGUGG|AGCCGCCCCGAGCGCGGAUCCCGGC|GGUAGU A.pern.TB7 1650 AACagcg-aaGCGGGG(UGAGAA-U)CCC-CGC|CGCCGGAAaGGGCAAG A.pern.TB7 1700 GGUUCCCCGGCAAUG-(GUCGU)CA|GCCGGGGGUCAGC|CGG|-UCCUA A.pern.TB7 1750 ACCGGGA-CCG(UAACA)CGG--AUCCCGGGAAG-GGGAAACGGG(UUAA A.pern.TB7 1800 CAUU)CCCGU|GC-cgcggggg-uacgcuucgcg(-gcaa)cgcaaggcc A.pern.TB7 1850 ccac-ccccgacgccucgggguaggcgg|accggg(ggccccc-uuaggg A.pern.TB7 1900 gggcga)cccggc|-uaaccugccgaaggcCGGGGAGUG-CC(GUAAC)G A.pern.TB7 1950 G|CGAGAACCG--gccga-aggggggaau-|ggc|ccgcc(--uaug)-g A.pern.TB7 2000 cggguu-ccgccgaccccug-|gggcccuugaaaaggggguggggaa--- A.pern.TB7 2050 ggaucccccgc--g|C|CCGUACCGAGAACC(GACACA)GG|UGCCCCUG A.pern.TB7 2100 GG(ugagcag)CCCAA-GGCGU||CUGGGG-GCUAACCCGGGCCAGGGAA A.pern.TB7 2150 CUCGGCAAAUUGGCCCCGUAAC(UUCG)GGAGAAGGGGU|GCCUGC---g A.pern.TB7 2200 guccug-ggg-(-cucgaa)-cccugggacc--GCAGGU|C(GCA)GUGC A.pern.TB7 2250 CUAGGGGGGCC|UGACUGU(UUAACAAAA)ACAUAGCUCCCCG|CUAGCC A.pern.TB7 2300 C(GAAAA)GGGUGUGUACGGGGGGUGAGCCCUGGCCACU|GGCGGUCCGU A.pern.TB7 2350 GAA----accgggg---(uaca)----acccgg----cGAAGCG|CCGCU A.pern.TB7 2400 GAAG|GCC|GGGAGU(AACCCUG)ACUCUC|U(UAA)GGUAGCCAAAUGC A.pern.TB7 2450 CUU|GCCGGG(UA-----AGU)UCCGGC|GCGCAUGAACGGGUCAACGAG A.pern.TB7 2500 GUCCCCACUGUCCUGGCCCGGG-GCCCC|GUGAACCC|-CCUGA-GCCGA A.pern.TB7 2550 (-UGCACA-GU)CCGGCAUCCCCCCGCAGGGAGAGAAGACCCCGUGG|AG A.pern.TB7 2600 CUUUACCGC|AGCCCGGCGUU|GGcccccgggcggggguGCGUAGCGUAG A.pern.TB7 2650 GUGGGAGCCGAUG---AGCCACCCUC(UCCG-)GGGGGUGG-GGAGGCGU A.pern.TB7 2700 CCCUGAAACACCACC|CCCGCCCGGGGCCUUACCCCGC-----cccg(gg A.pern.TB7 2750 uggg)cggg----ggacagCGUCGGGUGGGCGGUUUGGCUG(GGG)CGGC A.pern.TB7 2800 AC|GCCCGC(GAAAGGGUAAC)ACGGGC|G|C|CCAAAGGUCGGC|UCAG A.pern.TB7 2850 GCGGG(UCAGAAC)UCCGCCGUAGA|GU(G|C-AAGG)GCAAAAGCCGGC A.pern.TB7 2900 CUGACCGGACCCC(ugaaagcaa-)GGGGUCCGGCCGG(GAAA)CCGUGG A.pern.TB7 2950 |CCUAGCGCACGCUCGUGC-CCC(--cucggug)GGG|GCCGGGC-acga A.pern.TB7 3000 c|aga--aAAGUUACCC|CGGG|GAUAACAG|AGUCGUCGCGGGCGAGA( A.pern.TB7 3050 GCCCCCA)UCGACCCCGCGGUUUGCUACCUCGAUGUC|GGCU|C|UUCCC A.pern.TB7 3100 |AUCC|UGGGGGU(GCAGCA)GCCCCCAAGGGU|GGGGC(UGCCC)GCCC A.pern.TB7 3150 AUUAAAGGGGAACGUGAGCUGGGUUCAGACC|GUC(GUGA)GACAGGUCG A.pern.TB7 3200 GUCUCUACCC|GCGGGGGG-|UG-uGGGCCGCCU|GA|GGGGAA-GGUGC A.pern.TB7 3250 CCU(UAGUAC(GAGA)GGAAC)GGGGCGC|CGCGGCCUCUGGUGUACCGG A.pern.TB7 3300 U|UGUCC-(UGGU)-GGGCA-acGCCGGGCA-GCUAAGCCGUA-GGGGGU A.pern.TB7 3350 AACCGCU(GAAAGCAUCUA)AGCGGGAACCCCUCCCC|GAA-AAGAGGCG A.pern.TB7 3400 GCC|gu|ugggcgccggc---------(cuggu)---------gccggcg A.pern.TB7 3450 ucca--cgagg|gc|UCCCG(UAGAAGA)CGGGGUUGAUGG|GGCGG|GG A.pern.TB7 3500 GUGUGAGCCCCgaggggg(cuuag-)cccucgaGGGGU|GUAGCCC|G|C A.pern.TB7 3550 CGCUCCCAaucgcccgag--|gccg------------||||| S.marinu.1 0 |~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|~~~~~~ S.marinu.1 50 |~~~~~~~|~~|~~~~~~~~~~~|~~~~(~~~~~~)~|~~~~~~~~~~~~ S.marinu.1 100 ~~~|~~~~~(~~~~~~~)~~~~~~~~~~~~~~~~~~~|~~~~~~~~~~~( S.marinu.1 150 ~~~~~)~~~|~~~~~~~~~~~~~~(~~~~~)~~~~~~~~~~~~~~~~~~~ S.marinu.1 200 ~~~~~~~(~~~~~~~~~~~~)~~~~~~~~~~~~~~~~~|~~~~~~~~~~| S.marinu.1 250 ~~(~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~(~~~~~~)~~~~~~|~ S.marinu.1 300 ~~~~~~~~~~~(~~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ S.marinu.1 350 ~~~~~(~~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ S.marinu.1 400 ~~~~~(~~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ S.marinu.1 450 (~~~~~~)~~~~~~~~|~(~~~)~~~~~(~~~~~~~)~~~~~~~~~~~~~ S.marinu.1 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~(~~~~~~ S.marinu.1 550 ~~~)~~~~~~~~~~~~~~~~~~~~(~~~~~~~~)~~~~~~~~~~~~~~~~ S.marinu.1 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~(~~~~)~~~~~~~~~~~~~ S.marinu.1 650 ~~~~~~~~(~~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ S.marinu.1 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ S.marinu.1 750 ~~(~~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ S.marinu.1 800 ~~~~~~~~(~~~~~~~|~)~~~~|~~~~~~~~~~~~~~~~~~~~~~~~~~ S.marinu.1 850 ~~~~~~~~~~(~~~~~~~)~~~~~~~~~~~~~~~(~~~~)~~~~~~~~~~ S.marinu.1 900 ~~~~~~~~~~~(~~~~)~~~~~~~~~~~~~~~~~~~~~(~~~~~)~~~~~ S.marinu.1 950 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|~~~ S.marinu.1 1000 ~~~~~~~~~~~~~(~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ S.marinu.1 1050 (~~~~~~~~~)~~~~~~|~~~~~~~~~~~~~~~~~~~~~~(~~~~~)~~~ S.marinu.1 1100 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~(~~~~)~~~~ S.marinu.1 1150 ~~~|~~~~~~~~~~|~~~|-~~~~~~~~|~~~~~~|~~~~~~~~~~~~~~ S.marinu.1 1200 ~~~~~~~|~~~~~(~~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ S.marinu.1 1250 ~|~~~~~~~~~~~~~~~~|~~~~~~~~~~~~~~~~~~~-~~~~~(~~~~~ S.marinu.1 1300 ~)~~~~~~~~~~~~~~~~~~(~~~~~~)~~~~~~~~~~~~~~~~~~~~|~ S.marinu.1 1350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ S.marinu.1 1400 ~~~~~~~~~~~~~~~~~~(~~~~~~~~~)~~~~~~~~|~(~~~)~|~~~~ S.marinu.1 1450 ~~(~~~~~~)~~|~~~~~~~~~~~~~~~~~~~~~|~~~~~~~~~~~~~~~ S.marinu.1 1500 ~~~~~~~~~~~~~~|~|~~~~~~~~~|~~~~|~~~~~~~~~~(~~~~~~) S.marinu.1 1550 ~~~~~~~~~~~~~~~~~~~~~~|~~~~~~~~~~~~~~~~~~~~~~~~~~~ S.marinu.1 1600 ~(~~~~)~~~~~~~~~~|~~~~~~~~~~~~~~~GGAUCCCGGC|GGCAGU S.marinu.1 1650 AGCagcg-aaGAGGGG(UGGAAA-U)CCC-CUC|CGCCGGAAaGGGCCAG S.marinu.1 1700 GGUUCCUCGGCAACG-(GUCGU)CG|GCCGAGGGUUAGC|CGG|-CCCUA S.marinu.1 1750 ACCCGGG-CCG(UAACA)CGG--ACCCGGGGAAG-GGGAAACGGG(UUAA S.marinu.1 1800 UAUU)CCCGU|GC-cgcggggg-uaga---cgcg(-gcaa)cgcaa-gcc S.marinu.1 1850 cggc-cuccgacgccuccggauaggcgg|accggg(ggcaccc-gaaugg S.marinu.1 1900 gugcga)cccggc|-uaaccggu-gaaggcCCUGGAGAA-CC(GUAAU)G S.marinu.1 1950 G|UGAGAAGGG--gccga-agccgggaau-|ggg|acccc(--guau)gg S.marinu.1 2000 ggucuu-ccgcugacuccgg-|gggcccaugaaaagggggccgggaa--- S.marinu.1 2050 cgaucccccgc--g|U|CCGUACCGAGAACC(GACACA)GG|UGCCCCUG S.marinu.1 2100 GG(ugaguag)CCCCA-GGCGu||cuGGGG-GAUAACCCGGGCCAGGGAA S.marinu.1 2150 CUCGGCAAAUUGGCCCCGUAAC(UUCG)GGAGAAGGGGU|GCCCGC---g S.marinu.1 2200 gucugg-agg-(caaaaac)-ccucuggacc--GCGGGU|C(GCA)GUGC S.marinu.1 2250 CUAGGGGGGCC|UGACUGU(UUAAUAAAA)ACAUAGGUCCCCG|CAAGCC S.marinu.1 2300 C(GAA-A)GGGUGUGUACGGGGGCUGAAUCCUGGCCACU|GGCGGUCCGU S.marinu.1 2350 GAA----accgggg---(uaca)----acccgg----cGAAGCG|CCGCU S.marinu.1 2400 GAAG|GCC|GGGAGU(AACUCUG)ACUCUC|U(UAA)GGUAGCCAAAUGC S.marinu.1 2450 CUU|GCCGGG(UG-----AGU)UCCGGC|GCGCAUGAAUGGAUCAACGAG S.marinu.1 2500 GUCCCCACUGUCCUGGCCCGGG-GCCCC|GCGAAUAC|-ACGGA-GCCGG S.marinu.1 2550 (-UGCACA-GG)CCGGCAACCCCCCGCAGGGCGAUAAGACCCCGUGG|AG S.marinu.1 2600 CUUCACCGC|AGCCUGGCGUU|GGCCUCCGGGCUGCGGCGCGUAGCGUAG S.marinu.1 2650 GUGGGAGCCAGUG---AACCCGCCCC(UCCG-)GGGGCGGG-GGAGGCGC S.marinu.1 2700 CAAUGAAACACCACC|CACCGCAGCCCGGAGGCCuuaccc-ccgggg(-- S.marinu.1 2750 aga-)ucccggggggacAGCGUCAGGUGGGCGGUUUGGCUG(GGG)CGGC S.marinu.1 2800 AC|GCCCGC(GAAAAGGUAAC)ACGGGC|G|C|CCAAAGGUCGGC|UCAG S.marinu.1 2850 GCGGG(UCAGAGC)UCCGCCGUAGA|GU(G|C-AAGG)GCAAAAGCCGGC S.marinu.1 2900 UUGACCGGACCCc(ggaacacaa-)cGGGUCCGGCCGG(GAAA)CCGCGG S.marinu.1 2950 |CCUAGCGAACGCUCGUGC-CCC(-ccucggug)GGG|GCCGGGC-auga S.marinu.1 3000 c|aga--aAAGUUACCC|CGGG|GAUAACAG|AGUCGUCGCGGGCGAGA( S.marinu.1 3050 GCUCCCA)UCGACCCCGCGGUUUGCUACAUCGAUGUC|GGCU|C|UUCCC S.marinu.1 3100 |AUCC|UGGGAGU(GCAGCA)GCUCCCAAGGGU|GGGGC(UGCCC)GCCC S.marinu.1 3150 AUUAAAGGGGAACGUGAGCUGGGUUUAGACC|GUC(GUGA)GACAGGUCG S.marinu.1 3200 GACUCUACCC|GCGGGGGG-|UG-UGGGCCGCCU|GA|GGGGAA-GGUGC S.marinu.1 3250 CCU(CAGUAC(GAGA)GGAAC)GGGGCGC|CGCGGCCAAUGGUGUACCGG S.marinu.1 3300 U|UGUCC-(GGCA)-GGGCA-uaGCCGGGCACGCCA-GCCGUA-GGGGGU S.marinu.1 3350 AACCGCU(GAAAGCAUCUA)AGCGGGAACCCCUCCCC|GAA-AAGAGGCG S.marinu.1 3400 GCC|gu|ccgccgaagggg--------(uuu--)--------ccucuucg S.marinu.1 3450 gcgg--guagg|gc|UCCCG(UAGAAGA)CGGGGUUGAUGG|GGCGG|GG S.marinu.1 3500 GUGUAAGCCCCgagggag(cauugu)cucccaaGGGGU|UUAGCCC|G|C S.marinu.1 3550 CGCUCCCAaaagcccga--c|gccgcaggcuu-----||||| S.marinu.2 0 |~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|~~~~~~ S.marinu.2 50 |~~~~~~~|~~|~~~~~~~~~~~|~~~~(~~~~~~)~|~~~~~~~~~~~~ S.marinu.2 100 ~~~|~~~~~(~~~~~~~)~~~~~~~~~~~~~~~~~~~|~~~~~~~~~~~( S.marinu.2 150 ~~~~~)~~~|~~~~~~~~~~~~~~(~~~~~)~~~~~~~~~~~~~~~~~~~ S.marinu.2 200 ~~~~~~~(~~~~~~~~~~~~)~~~~~~~~~~~~~~~~~|~~~~~~~~~~| S.marinu.2 250 ~~(~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~(~~~~~~)~~~~~~|~ S.marinu.2 300 ~~~~~~~~~~~(~~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ S.marinu.2 350 ~~~~~(~~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ S.marinu.2 400 ~~~~~(~~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ S.marinu.2 450 (~~~~~~)~~~~~~~~|~(~~~)~~~~~(~~~~~~~)~~~~~~~~~~~~~ S.marinu.2 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~(~~~~~~ S.marinu.2 550 ~~~)~~~~~~~~~~~~~~~~~~~~(~~~~~~~~)~~~~~~~~~~~~~~~~ S.marinu.2 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~(~~~~)~~~~~~~~~~~~~ S.marinu.2 650 ~~~~~~~~(~~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ S.marinu.2 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ S.marinu.2 750 ~~(~~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ S.marinu.2 800 ~~~~~~~~(~~~~~~~|~)~~~~|~~~~~~~~~~~~~~~~~~~~~~~~~~ S.marinu.2 850 ~~~~~~~~~~(~~~~~~~)~~~~~~~~~~~~~~~(~~~~)~~~~~~~~~~ S.marinu.2 900 ~~~~~~~~~~~(~~~~)~~~~~~~~~~~~~~~~~~~~~(~~~~~)~~~~~ S.marinu.2 950 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|~~~ S.marinu.2 1000 ~~~~~~~~~~~~~(~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ S.marinu.2 1050 (~~~~~~~~~)~~~~~~|~~~~~~~~~~~~~~~~~~~~~~(~~~~~)~~~ S.marinu.2 1100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~(~~~~)~~~~ S.marinu.2 1150 ~~~|~~~~~~~~~~|~~~|~~~~~~~~~|~~~~~~|~~~~~~~~~~~~~~ S.marinu.2 1200 ~~~~~~~|~~~~~(~~~~~)~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ S.marinu.2 1250 ~|~~~~~~~~~~~~~~~~|~~~~~~~~~~~~~~~~~~~~~~~~~(~~~~~ S.marinu.2 1300 ~)~~~~~~~~~~~~~~~~~~(~~~~~~)~~~~~~~~~~~~~~~~~~~~|~ S.marinu.2 1350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ S.marinu.2 1400 ~~~~~~~~~~~~~~~~~~(~~~~~~~~~)~~~~~~~~|~(~~~)~|~~~~ S.marinu.2 1450 ~~(~~~~~~)~~|~~~~~~~~~~~~~~~~~~~~~|~~~~~~~~~~~~~~~ S.marinu.2 1500 ~~~~~~~~~~~~~~|~|~~~~~~~~~|~~~~|~~~~~~~~~~(~~~~~~) S.marinu.2 1550 ~~~~~~~~~~~~~~~~~~~~~~|~~~~~~~~~~~~~~~~~~~~~~~~~~~ S.marinu.2 1600 ~(~~~~)~~~~~~~~~~|~~~~~~~~~~~~~~~GGAUCCCGGC|GGCAGU S.marinu.2 1650 AGCagcg-aaGAGGGG(UGGAAA-U)CCC-CUC|CGCCGGAAaGGGCCAG S.marinu.2 1700 GGUUCCUCGGCAACG-(GUCGU)CG|GCCGAGGGUUAGC|CGG|-CCCUA S.marinu.2 1750 ACCCGGG-CCG(UAACA)CGG--ACCCGGGGAAG-GGGAAACGGG(UUAA S.marinu.2 1800 UAUU)CCCGU|GC-cgcggggg-uaga---cgcg(-gcaa)cgcaa-gcc S.marinu.2 1850 cggc-cuccgacgccuccggauaggcgg|accggg(ggcaccc-gaaugg S.marinu.2 1900 gugcga)cccggc|-uaaccggu-gaaggcCCUGGAGAA-CC(GUAAU)G S.marinu.2 1950 G|UGAGAAGGG--gccga-agccgggaau-|ggg|acccc(--guau)gg S.marinu.2 2000 ggucuu-ccgcugacuccgg-|gggcccaugaaaagggggccgggaa--- S.marinu.2 2050 cgaucccccgc--g|U|CCGUACCGAGAACC(GACACA)GG|UGCCCCUG S.marinu.2 2100 GG(ugaguag)CCCCA-GGCGu||cuGGGG-GAUAACCCGGGCCAGGGAA S.marinu.2 2150 CUCGGCAAAUUGGCCCCGUAAC(UUCG)GGAGAAGGGGU|GCCCGC---g S.marinu.2 2200 gucugg-agg-(caaaaac)-ccucuggacc--GCGGGU|C(GCA)GUGC S.marinu.2 2250 CUAGGGGGGCC|UGACUGU(UUAAUAAAA)ACAUAGGUCCCCG|CAAGCC S.marinu.2 2300 C(GAA-A)GGGUGUGUACGGGGGCUGAAUCCUGGCCACU|GGCGGUCCGU S.marinu.2 2350 GAA----accgggg---(uaca)----acccgg----cGAAGCG|CCGCU S.marinu.2 2400 GAAG|GCC|GGGAGU(AACUCUG)ACUCUC|U(UAA)GGUAGCCAAAUGC S.marinu.2 2450 CUU|GCCGGG(UG-----AGU)UCCGGC|GCGCAUGAAUGGAUCAACGAG S.marinu.2 2500 GUCCCCACUGUCCUGGCCCGGG-GCCCC|GCGAAUAC|-ACGGA-GCCGG S.marinu.2 2550 (-UGCACA-GG)CCGGCAACCCCCCGCAGGGCGAUAAGACCCCGUGG|AG S.marinu.2 2600 CUUCACCGC|AGCCUGGCGUU|GGCCUCCGGGCUGCGGCGCGUAGCGUAG S.marinu.2 2650 GUGGGAGCCAGUG---AACCCGCCCC(UCCG-)GGGGCGGG-GGAGGCGC S.marinu.2 2700 CAAUGAAACACCACC|CACCGCAGCCCGGAGGCCuuaccc-ccgggg(-- S.marinu.2 2750 aga-)ucccggggggacAGCGUCAGGUGGGCGGUUUGGCUG(GGG)CGGC S.marinu.2 2800 AC|GCCCGC(GAAAAGGUAAC)ACGGGC|G|C|CCAAAGGUCGGC|UCAG S.marinu.2 2850 GCGGG(UCAGAGC)UCCGCCGUAGA|GU(G|C-AAGG)GCAAAAGCCGGC S.marinu.2 2900 UUGACCGGACCCc(ggaacacaa-)cGGGUCCGGCCGG(GAAA)CCGCGG S.marinu.2 2950 |CCUAGCGAACGCUCGUGC-CCC(-ccucggug)GGG|GCCGGGC-auga S.marinu.2 3000 c|aga--aAAGUUACCC|CGGG|GAUAACAG|AGUCGUCGCGGGCGAGA( S.marinu.2 3050 GCUCCCA)UCGACCCCGCGGUUUGCUACAUCGAUGUC|GGCU|C|UUCCC S.marinu.2 3100 |AUCC|UGGGAGU(GCAGCA)GCUCCCAAGGGU|GGGGC(UGCCC)GCCC S.marinu.2 3150 AUUAAAGGGGAACGUGAGCUGGGUUUAGACC|GUC(GUGA)GACAGGUCG S.marinu.2 3200 GACUCUACCC|GCGGGGGG-|UG-UGGGCCGCCU|GA|GGGGAA-GGUGC S.marinu.2 3250 CCU(CAGUAC(GAGA)GGAAC)GGGGCGC|CGCGGCCAAUGGUGUACCGG S.marinu.2 3300 U|UGUCC-(GGCA)-GGGCA-uaGCCGGGCACGCCA-GCCGUA-GGGGGU S.marinu.2 3350 AACCGCU(GAAAGCAUCUA)AGCGGGAACCCCUCCCC|GAA-AAGAGGCG S.marinu.2 3400 GCC|gu|ccgccgaagggg--------(uuu--)--------ccucuucg S.marinu.2 3450 gcgg--guagg|gc|UCCCG(UAGAAGA)CGGGGUUGAUGG|GGCGG|GG S.marinu.2 3500 GUGUAAGCCCCgagggag(cauugu)cucccaaGGGGU|UUAGCCC|G|C S.marinu.2 3550 CGCUCCCAaaagcccga--c|gccgcaggc~~~~~~~||||| D.mobilis 0 |------------------cg--acGAcGCCGCCCGGUGGAUG|GCUCGG D.mobilis 50 |CUCGGG-|cg|cCGAGGAAGGC|CGUG(GCAAGC)U|GCGAUAAGCCCG D.mobilis 100 GGG|uAGGC(GCAGGCA)GCCGUu-GAACCCGGGAUC|GC-CGAAUGGG( D.mobilis 150 ACUU-)CCC|gccacgggu-----(uaa--)-----acccgu-ggcugcc D.mobilis 200 cgggaaa(cccgcg--aggg)gaguaccgggcggGAAC|CCCCCGAACG| D.mobilis 250 GA(AACA)UCUUAGUAGGGGGAGGAGAAGAAACC(AA--AC)GGGA-U|C D.mobilis 300 CCCUGAGUAGG(GGCGA)CCGAAAGGGGGACAGCCCAaaccaaa-ucuc- D.mobilis 350 cacgg(gacga)ccgug-gaga-gaugugggguuacaggcuccacggcu- D.mobilis 400 -gggg(cucga)cccc-agcaggccuacccaucguagcc-GAAguggcc- D.mobilis 450 (uggaaa)-ggcccgc|c(gua)gaGGG(UGACAGC)CCCGUA-ggcuaa D.mobilis 500 acgaugggggccug---cgccgugg-agcaGAGUACCACGGCu(---ugg D.mobilis 550 uuu)uGCCGUGGGAAG-UCGGGGG(UcaccgA-)CCUCCAAGGCUAAAUA D.mobilis 600 cgu-CCCGAGACCGAUAGCGUACUAAGUACC(GUGA)GGGAAAGCUGAAA D.mobilis 650 AGCACCCC(gcaag)GGGG-GUG-AAAAGAGCCUGAAACCGGGCGGCuac D.mobilis 700 a-uac-ggcacggcccu-caaggag---ugaagcccgcuaaaggaaaccg D.mobilis 750 gg(guga-)cccgg---gaguacgag-gcgggcu-gacca--gggucgug D.mobilis 800 ccGUCCGU(CUUGAAA|C)ACGG|GCCGGGGAGUCCAC-GGCAGUGGCGA D.mobilis 850 GCCUAAgggg(gucaaag)ccccGGAGGCGUAGG(GAAA)CCGacaggcc D.mobilis 900 cgcaaccgcc-(gcaa)-ggcggcgaggggcggGGUCC(caaa-)GGGCC D.mobilis 950 CGGAGUCACUGCCGUGGGACCAGAAACCGGGCGAUCUAGGCGGGGG|CAG D.mobilis 1000 GGCGAAGCCGGGG(GAAA)CCCCGGUGGAGGCCCGaaa-ggguu-cu-ga D.mobilis 1050 (cgugca-au)ucgu-u|cccauGACCCCCGUCUAGGGGC(AAAAG)ACC D.mobilis 1100 AAUCUAGCCCGG-UGAUAGCUGGUUCCCGCCGAAGUGGGU(CUCA)GCCC D.mobilis 1150 AGC|CCCGCCGga-|ggu|-ggGCCACG|GGGUAG|AGCUACGGAUCGGG D.mobilis 1200 gaugcGG|AGGCC(gaaa-)GGCCU-Cg-GUCCCCGGUCCAACUCCGAAC D.mobilis 1250 C|UGUGGCcaccgu-aga|UGGCGGG-AGUGGGGUUCC-CCGGC(G-UAA D.mobilis 1300 G)GUUG-GGGGCCGCGAGGG(GAACAA)CCCAGACCGG-GGUUAAGGC|C D.mobilis 1350 CCAAAGUGCCGGCUA-AGUGcua---accaAAAGGGCGUCCCGCGGCUUA D.mobilis 1400 GACAGCGGGGAGGUGGGC(CUAACAGCA)GCCAUCCU|U(UAA)A|GAGU D.mobilis 1450 GC(GUAACA)GC|UCACCCGCCGAGCCGCGGGGC|CCCGAAGAUUGGUCG D.mobilis 1500 GGGCUcAAGCCGGC|C|GCCGAGACC|CCGG|ggcacggcuc(cgaug-) D.mobilis 1550 gagccgugauccGGUAGGCGGG|CGCCGGGUC-GGGGCAGAAGCCGGG-C D.mobilis 1600 C(GUGA)GGUCCGGUGG|ACCCGAUCCGGGUGAAGAUCCCGGC|GGCAGU D.mobilis 1650 AACagcg-aaGAGGGG(UGUGAA-U)CCC-CUC|CGCCGGAAaGGGCAAG D.mobilis 1700 GGUUCCUCGGCAACG-(GUCGU)CG|GCCGAGGGUUAGC|CGG|-UCCUA D.mobilis 1750 ACCCGGG-CCG(UAACA)CGG--ACCCGGGGAAU-GGGAAACGGG(UUAA D.mobilis 1800 UAUU)CCCGU|GC-cacggggg-uagg---ugcg(-gcaa)cgcaa-gcc D.mobilis 1850 ccgc-cucugacgccucuggauaggcgg|acuggg(ggcaccc-guaugg D.mobilis 1900 gugcga)cccagc|-uaaccggu-gaaggcCCCGGAGUA-CC(GUCAU)G D.mobilis 1950 G|UGAGAAGGG--gccga-agccgggaau-|ggg|gcucc(--cuug)gg D.mobilis 2000 agccuu-ccgccgauuccag-|gggcccuugaaaagggggcggggaa--- D.mobilis 2050 cgaucccccgu--g|A|CCGUACCGAGAACC(GACACA)GG|UGCCCCUG D.mobilis 2100 GG(uuagaag)CCCAA-GGCGu||guGGGG-GCUAACCCAGGCCAGGGAA D.mobilis 2150 CUCGGCAAAUUGGCCCCGUAAC(UUCG)GGAGAAGGGGU|GCCUGC---g D.mobilis 2200 gucuug-ggg-(--cacac)-cccugggacc--GCAGGC|C(GCA)GUGC D.mobilis 2250 CUAGGGGGGCC|UGACUGU(UUAAUAAAA)ACAUAGGUCCCCG|CAAGCC D.mobilis 2300 C(GAA-A)GGGUUUGUACGGGGGCUGAAUCCUGGCCACU|GGCGGUCCGU D.mobilis 2350 GAA----accgggg---(ucca)----acccgg----cGAAGCG|CCGCU D.mobilis 2400 GAAG|GCC|GGGAGU(AACUCUG)ACUCUC|U(UAA)GGUAGCCAAAUGC D.mobilis 2450 CUU|GCCGGG(UAa+gagAGU)UCCGGC|GCGCAUGAAUGGAUCAACGAG D.mobilis 2500 GUCCCCACUGUCCUGGCCUGGG-GCCCC|GUGAAGAC|-ACGGA-GCCGG D.mobilis 2550 (-UGCAUA-GG)CCGGCAACCCCCCGCAGGGCGAUAAGUCCCCGUGG|AG D.mobilis 2600 CUUCACCGC|AGCCUGGCGCU|GGCAUCCGGGUCGCGGCGCGUAGCGUAG D.mobilis 2650 GUGGGAGCCUGUG---AUGCCGUGCC(UUCG-)GGCACGGU-GGAGGCGG D.mobilis 2700 CAAUGAAACACCACC|CACCGUGACCUGGAUGCCuuac---ucccgg(-g D.mobilis 2750 uag-)ccggga--ggacAACGCCAGGUGGGCGGUUCGGCUG(GGG)CGGC D.mobilis 2800 AC|GCCCGC(GAAAAGAUAAC)ACGGGC|G|C|CCAAAGGUCGGC|UCAG D.mobilis 2850 GCGGG(UCAGAGC)UCCGCCGUAGA|GU(G|C-AAGG)GCAAAAGCCGGC D.mobilis 2900 CUGACCGGACCCU(ugaacacaa-)GGGGUCCGGCCGG(GAAA)CCGCGG D.mobilis 2950 |CCUAGCGAACGCUCGuGC-CCC(-ccucggug)GGG|GCCGGGC-auga D.mobilis 3000 c|aga--aAAGUUACCC|CGGG|GAUAACAG|AGUCGUCGCGGGCGAGA( D.mobilis 3050 GCUCCCA)UCGACCCCGCGGUUUGCUACAUCGAUGUC|GGCU|C|UUCCC D.mobilis 3100 |AUCC|UGGGGGU(GCAGCA)GCCCCCAAGGGU|GGGGC(UGCCC)GCCC D.mobilis 3150 AUUAAAGGGGAACGUGAGCUGGGUUUAGACC|GUC(GUGA)GACAGGUCG D.mobilis 3200 GACUCUACCC|GCGGGGGG-|UG-CGGGCCGCCU|GA|GGGGAA-GCUGC D.mobilis 3250 CCU(CAGUAC(GAGA)GGAAC)GGGGCGG|CGCGGCCUCUGGUUUACCGG D.mobilis 3300 U|UGUCC-(UGGC)-GGGCA-acGCCGGGCA-GCCACGCCGCA-AGGGGU D.mobilis 3350 AACCGCU(GAAAGCAUCUA)AGCGGGAACCCCUCCCC|GAA-AAGAGGCG D.mobilis 3400 GCC|ug|ccgucacgg-----------(guua-)-----------ccgug D.mobilis 3450 gcgg--cgcgg|gc|UCCCG(UAGAAGA)CGGGGUUGAUGG|GGCGG|GG D.mobilis 3500 GUGUAAGCCC-aaggg--(guua--)--cccgaGGGGU|UCAGCCC|G|C D.mobilis 3550 CGCUCCCAagagcccgaa--|cg------ccg-----||||| S.shibatae 0 |----------cgacuaggggc-ACCAAGCCAGCCGGUGGAUG|GCUCGG S.shibatae 50 |CUCGGG-|cg|cUGACGAAGGG|CGCG(GCAAGU)G|GCGAAAUGCCCG S.shibatae 100 GGG|UAGGC(ACACGCU)GCCUUU-GAACCCGGGAUN|CCCCGAAUGGg- S.shibatae 150 -a----CCU|-cccnc--------(-uuu-)--------g-g-ggn-gca S.shibatae 200 cccga-c(uc-gnnna---g)aguucggguguGGGAAC|UCCCCGAACG| S.shibatae 250 GA(AACA)UCUUAGUAGGGGAAGGAGGAGAAAUC(AA--CC)GAGA-C|C S.shibatae 300 CCCUGAGUAGG(GGCGA)CCGAAAGGGGGANAGCCCAaaccaaa-cccg- S.shibatae 350 ccggc(gacaa)gucgg-uggg-aaugugguguuauuggccuccagucu- S.shibatae 400 -gguu(-uaa-)agcc-gaccucccuggccuaccuagcc-GAAcucucc- S.shibatae 450 (uggaau)-ggagggc|c(aua)gaGGG(UGACAGC)CCCGUA-ggcuaa S.shibatae 500 agguaggugggagg---uggcugga-ggcaGAGUACCAUCCCC(---ugg S.shibatae 550 uuc)GGGGGUGGGAAG-UUGGGGG(Ccacgug-)CCUCCAAGGCUAAAUA S.shibatae 600 cgu-CCCGAGACCGAUAGCGAACUAAGUACC(GUGA)GGGAAAGCUGCAA S.shibatae 650 AGUACCCC(GGAAN)NGGGGGGUGAAAAGAGCCUGAAACCGGCUGGUCau S.shibatae 700 aguag-ggcaaggcuc--gaaagga--gugaagucucccgaaggaaagag S.shibatae 750 gc(gcga-)gccnnnucgaguacgag-ggagaug-gaccg--gggucuug S.shibatae 800 ccUUUCGU(CCUGAAA|C)ACGG|GCCGGGGAGUUCAC-GUCAGUGGCGA S.shibatae 850 GCCUAAgggg(--guuaa)ccccGAAGGCAUAGG(GAAA)CCGag-ugcc S.shibatae 900 cgcaacccgg-(gaaa)-ccgggugaggggcagGGUCU(guca-)GGGCC S.shibatae 950 UAAAGUCACUGGCGUGAGGCUAGAAACCGGGCGAUCUAGGCCGGGG|CAG S.shibatae 1000 GCCGAAGCCGGGG(GAAA)CCUCGGUGGAGGGCCGaauaggg-guucuga S.shibatae 1050 (cgugca-au)uc-guu|ccccuGACCCCGGUCUAGGGGC(GAAAG)ACC S.shibatae 1100 AAUCUAGCUCGG-UGAUAGCUAGUUCCCCCCGAAAUGCGU(CCUA)GCGC S.shibatae 1150 AGC|CUCCCUgga-|ggu|-ugCCUACG|GGGUAG|AGuaacUGAUUGGG S.shibatae 1200 GGU--UC|GGAGC(gaaa-)GCUCC-GG-GCUUCCAGUCAAACUCCGAAC S.shibatae 1250 U|CGUAGGcgccga-aga|aGGGGAG-AGUGGGCCACU-C-GGC(G-UAA S.shibatae 1300 G)GUUG-GGUGGCGAAAGGG(AAACAG)CCCAGACUUG-GGUUAAGGC|C S.shibatae 1350 CCAAAAUGCCGGCUA-AGUGcc----aguuGAAGGGCGUCUCUAGCCUUA S.shibatae 1400 GACAGCGGGAAGGUGGGC(CCAGCAGCA)GCCAUCCU|C(UAA)G|GAGU S.shibatae 1450 GC(GUAACA)GC|UCACCCGCCGAGGCUAGAGGC|CCCGAAGAUUGGUCG S.shibatae 1500 GGCUUAAGCCCGGC|U|GCCGAGACC|CAAG|cguggagacu(caaug-) S.shibatae 1550 agucucca--cgGGUAGGGGGG|CGCUGUGGU-GGGGUAGAAGGUGGG-U S.shibatae 1600 C(GUGA)GAUCCACUGG|ACCCGCCACAGGUGCAGAUCCCGGC|GGCAGU S.shibatae 1650 AACagcg-agGAGGGG(UGAGAU-U)CCC-CUC|CGCCGGAA-GGGCCAG S.shibatae 1700 GGUUUCCCGGCAAUG-(GUCGU)CA|GCCGGGAGUGAGC|CGG|-UCCUA S.shibatae 1750 AGGCGAG-GCC(UAAUA)GGU--ACUCGCCGAAA-GGGAAGUGGG(UUAA S.shibatae 1800 UAUU)CCCAC|GC-ccuagggg-uagg---ugcg(-guaa)cgcaa-gcu S.shibatae 1850 ggac-ucccgacggaucuggguagggug|aguggg(-----gc-caccgc S.shibatae 1900 ------)cccauc|-caagcgcu-uaagucCCUGGAGUG-CC(GUAAU)G S.shibatae 1950 G|UGAGAAGGG--gacga-aggcgugaug-|ggn|guucc(--cuuu)gg S.shibatae 2000 ggacuu-cacccaaucccag-|guccccuugaaaagggaguccagaa--- S.shibatae 2050 cgauccccuag--g|A|CCGUACCGAGAACC(GACACU)GG|UGCCCCUG S.shibatae 2100 GG(ugagaag)CCCAA-GGCGU||CUGGGG-GUUAACUCAGGCUAGGGAA S.shibatae 2150 CUCGGCAAAAUAGCCCCGUACC(UUCG)GUAGAAGGGGU|GCCUAC---u S.shibatae 2200 aggguc-g---(--uaaac)---cggccuca--GUAGGU|C(GCA)GUGA S.shibatae 2250 CAAGAGGGACC|UGACUGU(UUAAUAAAA)ACAUAGGUCCCCG|CUAGCC S.shibatae 2300 C(GAA-A)GGGUGUGAACGGGGGCUAAAUCCUGGCCACU|GGUGGUUGGU S.shibatae 2350 GAA----agccggg---(ucca)----accggc----cGAAGCC|CCACU S.shibatae 2400 GAAG|GCC|GGGGGU(AACUCUG)ACCCUC|U(UAA)GGUAGCCAAAUGC S.shibatae 2450 CUU|GCCGGG(UA-----AGU)UCCGGC|GCGCAUGAAUGGAUCAACGUG S.shibatae 2500 GUCCCUACUGUCCCAGCCUGGG-GCCCC|GUGAACGC|-CCAGA-GUGGG S.shibatae 2550 (-UUCACA-GU)CCCGCAACUCCCCACACCGAGAGAAGACCCCGUGG|AG S.shibatae 2600 CUUCACCGC|AGCCUGGCGCU|GCUCCUCGGGCGCCUAUGCGUAGAGUAG S.shibatae 2650 GUGGGAGGGGUCG---AACCCAUCCU(UUCG-)GGGAUGGG-GNACCCGA S.shibatae 2700 AGGUGAAACACCACC|CAUGGGUGCUCGAGGAGCuuac----cugcc(-c S.shibatae 2750 gna-)ggugg---ggacAGCGUCAGGUGGGCGGUUCGGCUG(GGG)CGGC S.shibatae 2800 AC|UCCCGC(GAAAAGAUAAC)ACGGGA|G|C|CCAAAGGUCGGC|UCAG S.shibatae 2850 GCGGU(ACAGAAC)GCCGCCGUAGA|GU(G|C-AAGG)GCAAAAGCCGGC S.shibatae 2900 CUGACGAGGCCCU(ccaaaguac-)GGGGUCUCGACGC(GAAG)GCGCGG S.shibatae 2950 |CCUAGCGAACGCUCGUGU-CCC(-cccacgug)GGG|GCCGGGC-auga S.shibatae 3000 c|aga--aAAGUUACCC|CGGG|GAUAACAG|GGUCGUCGCGGGCAAGA( S.shibatae 3050 GCUCCCA)UCGACCCCGCGGUUUGCUACAUCGAUGUC|GGCU|C|UUCCC S.shibatae 3100 |ACCC|UGGGGGU(GCAGCU)GCCCCCAAGGGU|AGGGC(UGCCC)GCCC S.shibatae 3150 GUUAAAGGGGAACGUGAGCUGGGUUUAGACC|GUC(GCGA)GACAGGUCG S.shibatae 3200 GACUCUAAGG|GUGGGGAG-|UG-UGGGCUGCCU|GA|GGGGAA-GGUAC S.shibatae 3250 CCC(AAGUAC(GAGA)GGAAC)AGGGUAC|CGGGGCCUCUAGUUUACCGG S.shibatae 3300 U|UGUCC-(GGUA)-GGGCA-GUGCCGGGCA-GCCACGCCCUG-UGGGGU S.shibatae 3350 AACCGCU(GAAAGCAUCUA)AGCGGGAACCCCUCCCC|UAA-AAGAGGCG S.shibatae 3400 GUC|a-|ggc----------------g(gguu-)a--------------- S.shibatae 3450 -ccg--ggggc|cc|GCCCC(UAGAAGA)GCGGGUUGAUGG|nnnnn|nn S.shibatae 3500 nnnnnnnnnnnnnnnnn-(nnnn--)-nnnnnnnnnnn|nnnnnnn|n|n S.shibatae 3550 nnnnnnnnnnnnnnnnnn--|nnnnnnnnnnn-----||||| S.solfatar 0 |---------acgacuaggggc-ACCAAGCCAGCCGGUGGAUG|GCUCGG S.solfatar 50 |CUCGGG-|cg|cUGACGAAGGG|CGCG(GCAAGU)G|GCGAAAUGCCCG S.solfatar 100 GGG|UAGGC(ACACGCU)GCCUUU-GAACCCGGGAUU|CCCCGAAUGGg- S.solfatar 150 -a----CCU|gcccc---------(-uuu-)---------gg-ggc-gca S.solfatar 200 cccgacu(c--gnnna----)gagucggguguGGGAAC|UCCCCGAACG| S.solfatar 250 GA(AACA)UCUUAGUAGGGGAAGGAGGAGAAAUC(AA--CC)GAGA-U|C S.solfatar 300 CCCUGAGUAGG(GGCGA)CCGAAAGGGGGAUAGCCCAaaccaaa-cccg- S.solfatar 350 ccgcc(ggcaa)gucgg-uggg-aaugugguguuauuggccuccagucu- S.solfatar 400 -gguu(-uaa-)agcc-ggccucccuggccuaccuagcc-GAAcucucc- S.solfatar 450 (uggaau)-ggagggc|c(aua)gaGGG(UGACAGC)CCCGUA-ggcuaa S.solfatar 500 agguaggugggagg---ugacugga-ggcaGCGUACCAUCCCC(---ugg S.solfatar 550 uuc)GGGGGUGGGAAG-UUGGGGG(Ccacgug-)CCUCCAAGGCUAAAUA S.solfatar 600 cgu-CCCGAGACCGAUAGCGAACUAAGUACC(GUGA)GGGAAAGCUGCAA S.solfatar 650 AG-ACCCC(GGAAG)GGGG-GUG-AAAAGAGCCUGAAACCGGCUGGUCau S.solfatar 700 aguag-ggcaaggcuc--gaaagga--gugaagucucccgaaggaaagag S.solfatar 750 gc(gcna-)gccu-----aguacgag-ggagaug-gaccg--gggucuug S.solfatar 800 ccUUUCGU(CCUGAAA|C)ACGG|GCCGGGGAGUUCAC-GCCAGUGGCGA S.solfatar 850 GCCUAAgggg(--guuaa)ccccGAAGGCAUAGG(GAAA)CCGag-ugcc S.solfatar 900 cgcagcccgg-(gaaa)-ccnggugaggggcagGGUCU(gcca-)GGGCC S.solfatar 950 UAAAGUCACUGGCGUGAGGCUAGAAACCGGGCGAUCUAGGCCGGGG|CAG S.solfatar 1000 GCCGAAGCCGGGG(GAAA)CCUCGGUGGAGGGCCGnnuaggg-guucuga S.solfatar 1050 (cgugca-au)uc-guu|ccccuGACCCCGGUCUAGGGGC(GAAAG)ACC S.solfatar 1100 AAUCUAGCUCGG-UGAUAGCUAGUUCCCCCCGAAAUGCGU(CCUA)GCGC S.solfatar 1150 AGC|CUUCCUgga-|ggu|-ugCCUACG|GGGUAG|AGuaacUGAUUGGG S.solfatar 1200 GGU--UC|GGAGC(gaaa-)GCUCC-GG-GCUUCCAGUCAAACUCCGAAC S.solfatar 1250 U|CGUAGGcgccga-aga|aGGGGAG-AGUGGGCCACU-C-GGC(G-UAA S.solfatar 1300 G)GUUG-GGUGGCGAAAGGG(AAACAG)CCCAGACUUG-GGUUAAGGC|C S.solfatar 1350 CCAAAAUGCCGGCUA-AGUGcc----aguuAAGGGGCGUCUCUAGCCUUA S.solfatar 1400 GACAGCGGGAAGGUGGGC(CCAGCAGCA)GCCAUCCU|C(UAA)G|GAGU S.solfatar 1450 GC(GUAACA)GC|UCACCCGCCGAGGCUAGAGGC|CCCGAAGAUUGGUCG S.solfatar 1500 GGGCUUAAGCCGGC|U|GCCGAGACC|CAAG|cguggaggcu(cauug-) S.solfatar 1550 agucucca--ugGGUAGGGGGG|CGCUGUGGU-GGGGUAGAAGGUGGG-U S.solfatar 1600 C(GUGA)GAUCCACUGG|ACCCGCCACAGGUGCAGAUCCCGGC|GGCAGU S.solfatar 1650 AACagcg-agGAGGGG(UAAGAC-U)CCC-CUC|CGCCGGAA-GGGCUAG S.solfatar 1700 GGUUUCCCGGCAAUG-(GUCGU)CA|GCCGGGAGUGAGC|CGG|-UCCUA S.solfatar 1750 AGGCGAG-GCC(UAAUA)GGU--ACUCGCCGAAA-GGGAAGUGGG(UUAA S.solfatar 1800 UAUU)CCCAC|GC-ccuagggg-uagg---cgcg(-guaa)cgcaa-gcu S.solfatar 1850 ggac-uccugacggaucuggguagggug|aguggg(-----gc-caccgc S.solfatar 1900 ------)cccauc|-caagcgcu-uaagucCCUGGAGUG-CC(GUAAU)G S.solfatar 1950 G|UGAGAAGGG--gacga-aggcgugaug-|ggn|guucc(--cuuu)gg S.solfatar 2000 ggacuu-cacccaaucccag-|guucccuugaaaagggaguccagaa--- S.solfatar 2050 cgauccccuag--g|A|CCGUACCGAGAACC(GACACU)GG|UGCCCCUG S.solfatar 2100 GG(ugagaag)CCCAA-GGCGU||CUGGGG-GUUAACUCAGGCUAGGGAA S.solfatar 2150 CUCGGCAAAAUAGCCCCGUACC(UUCG)GUAGAAGGGGU|GCCUAC---u S.solfatar 2200 gggguc-g---(--uaaac)---cggccuca--GUAGGU|C(GCA)GUGA S.solfatar 2250 CAAGGGGGACC|UGACUGU(UUAAUAAAA)ACAUAGGUCCCCG|CUAGCC S.solfatar 2300 C(GAA-A)GGGUGUGUACGGGGGCUAAAUCCUGGCCACU|GGUGGAUGGU S.solfatar 2350 GAA----agccggg---(ucca)----accggu----cGAAGCC|CCACU S.solfatar 2400 GAAG|GCC|GGGGGU(AACUCUG)ACCCUC|U(UAA)GGUAGCCAAAUGC S.solfatar 2450 CUU|GCCGGG(UA-----AGU)UCCGGC|GCGCAUGAAUGGAUCAACGUG S.solfatar 2500 GUCCCUACUGUCCCAGCCUGGG-GCCCC|GUGAACGC|-CCAGA-GUGGG S.solfatar 2550 (-UUCACA-GU)CCCGCAACUCCCCACACCGAGAGAAGACCCCGUGG|AG S.solfatar 2600 CUUCACCGC|AGCCUGGCGCU|GCUCCUCGGGCGCCUAUGCGUAGAGUAG S.solfatar 2650 GUGGGAGGGGUCG---AACCCAUCCU(UUCG-)GGGAUGGG-GGACCCGA S.solfatar 2700 AGGUGAAACACCACC|CAUGGGUGCUCGAGGAGCuuac---cugccc(-n S.solfatar 2750 nnn-)gggugg--ggacAGCGUCAGGUGGGCGGUUCGGCUG(GGG)CGGC S.solfatar 2800 AC|UCCCGC(GAAAAGAUAAC)ACGGGA|G|C|CCAAAGGUCGGC|UCAG S.solfatar 2850 GCGGU(ACAGAAC)GCCGCCGUGGA|GU(G|C-AAGG)GCAAAAGCCGGC S.solfatar 2900 UUGACGAGACCCU(ccaaaguac-)GGGGUCUCGACGC(GAAA)GCGCGG S.solfatar 2950 |CCUAGCGAACGCUCGUGC-CCC(-cccacgug)GGG|GCCGGGC-auga S.solfatar 3000 c|aga--aAAGUUACCC|CGGG|GAUAACAG|GGUCGUCGCGGGCGAGA( S.solfatar 3050 GCUCCCA)UCGACCCCGCGGUUUGCUACAUCGAUGUC|GGCU|C|UUCCC S.solfatar 3100 |ACCC|UGGGGGU(GCAGCU)GCCCCCAAGGGU|AGGGC(UGCCC)GCCC S.solfatar 3150 GUUAAAGGGGAACGUGAGCUGGGUUUAGACC|GUC(GCGA)GACGGGUCG S.solfatar 3200 GACUCUAAGG|GUGGGGAG-|UG-UGGGCUGCCU|GA|GGGGAA-GGUAC S.solfatar 3250 CCC(AAGUAC(GAGA)GGAAC)AGGGUAC|CGGGGCCUCUAGUUUACCGG S.solfatar 3300 U|UGUCC-(GGUA)-GGGCA-CUGCCGGGCA-GCCACGCCCUG-UGGGGU S.solfatar 3350 AACCGCU(GAAAGCAUCUA)AGCGGGAACCCCUCCCC|GAA-AAGAGGCA S.solfatar 3400 GCC|a-|ugcggg--------------(guuaa)--------------cc S.solfatar 3450 cgcg--agagc|cc|ACCUC(UAGAAGA)GGGGGUUGAUGG|GNNCG|GG S.solfatar 3500 GUGUAAGUCCCgagggc-(gaaa--)-guccgaGGGAU|UUAGCCC|G|C S.solfatar 3550 GCCUCCCAaucgggcaag--|ccc-ucuu--------||||| S.acidoc.1 0 |----------uacccagggg--ccGAAGCCUCCCGGUGGAUG|GCUCGG S.acidoc.1 50 |CUCGGG-|ca|cCGAAGAAGGG|CGCG(GCAAGC)A|GCGAAAUGCUCG S.acidoc.1 100 GGU|GAGGC(GCAAGCA)GCCGUU-GACCCCGAGGUC|CC-CUAAUGGG( S.acidoc.1 150 AUAU-)CCU|gccgg---------(guuu-)---------cc-ggc-gcu S.acidoc.1 200 cccgguu(---uau------)-aacugggaguGGGAAC|CCCCCGAACG| S.acidoc.1 250 GA(AACA)UCUUAGUAGGGGGAGGAAAAGAAAUC(AA--UU)GAGA-U|C S.acidoc.1 300 CCCUGAGUAGG(GGCGA)CCGAAAGGGGGACAGCCCAaacuaaa-ccug- S.acidoc.1 350 ccgau(gauaa)gucgg-uggg-gaugugguguuac-gaccucuagccu- S.acidoc.1 400 -gagg(uucga)ccuc-ggcuuuccuaaccuaucuagcc-GAAcucccc- S.acidoc.1 450 (uggaac)-gggggcc|c(aua)gaGGG(UGAAAGC)CCCGUA-ggcuaa S.acidoc.1 500 agauagguggaaag---uggcuaga-gguaGAGUACCAUCCCC(---ugg S.acidoc.1 550 uuu)GGGGGUGGGAAG-UUAGGGG(AcacguG-)CCUCUAAGGCUAAAUA S.acidoc.1 600 ugu-CCCGAGACCGAUAGCAAACUAAGUACC(GUGA)GGGAAAGCUGAAA S.acidoc.1 650 AGAACCCC(ggaag)GGGGAGUGCCAAAGAGCCUGAAACCGGGUGGUUau S.acidoc.1 700 a-cag-gguguggcuc--gaaagaa--gugaacccuuccgaaggaa-agg S.acidoc.1 750 gc(gcaa-)gcccu---uaguacgag-gaagggc-gaucg--gggucacg S.acidoc.1 800 ccuUUCGU(CUUGAAA|C)ACGG|GCCGGGGAGUUCAC-AUCAGUGGCGA S.acidoc.1 850 GCUUAAggag(--auuau)cuccGAAGGCAUAGG(GAAA)CCAag-ugcc S.acidoc.1 900 cgcagccuag-(uuu-)-cuaggcgaggggcagGGUCU(guca-)GGGCC S.acidoc.1 950 UGAAGCCACUGAUGUGAGGCUAGAAACCGGGCGAUCUAGUCCGGGG|CAG S.acidoc.1 1000 GCUGAAGGUGGGG(GAAA)CCCCACUGGAGGGCCGaauaggg-guucuga S.acidoc.1 1050 (cgugca-au)uc-guu|cccuuGACCUCGGACUAGGGGC(AAAAG)ACC S.acidoc.1 1100 AAUCUAGCCCGG-UGAUAGCUAGUUCCCCCCGAAAUGCGU(CCUA)GCGC S.acidoc.1 1150 AGC|CUCCCUaaa-|ggc|-agCUCGCG|GGGUAG|AGUGACAGAUCGGG S.acidoc.1 1200 ggc--UC|CAGGC(gaaa-)GCCUG-GG-GCUUCCGGUCUAACUCCGAAC S.acidoc.1 1250 C|CACGAGcgccga-aga|aGGGGGG-AGUGGGUCACU-C-GGC(G-UAA S.acidoc.1 1300 G)GUUG-GGUGGCAAAAGGG(GAACAA)CCCAGACCUG-GGUUAAGGC|C S.acidoc.1 1350 CCAAAGUCCCGGCUA-AGUGcc----aacgAAAAGGCGUCUCCAGCCUUA S.acidoc.1 1400 GACAGCGGGAAGGUGGGC(CCAGCAGCA)GCCAUCCU|C(UAA)G|GAGU S.acidoc.1 1450 GC(GUAACA)GC|UCACCCGCCGAGGCUGGAGGC|CCUAAAGAUUGGUCG S.acidoc.1 1500 GGGCUCAAGCCGGG|C|GCCGAGACC|CAGG|aggggu-cuc(uacua-) S.acidoc.1 1550 gag-aucc-ucuGGUAGGGGGG|CGCUGUGAU-GGGGUAGAAGGUGGG-U S.acidoc.1 1600 C(GUGA)GAUCCACUGG|ACCCGUCACAGGUGCAGAUCCCGGC|GGUAGU S.acidoc.1 1650 AACagcg-aaGGGGGG(UGAGAA-U)CCC-CCU|CGCCGGAA-GGGCAAG S.acidoc.1 1700 GGAUUCCCGGCAACG-(UUCGU)CA|GCCGGGAGUUAGC|CGG|-uCCUA S.acidoc.1 1750 AGGUAGG-GCC(UAAUA)GGU--ACCUACCGAAA-GGGAAAGGGG(UUAA S.acidoc.1 1800 CAUU)CCCCU|GC-cucccggg-uagg---ugcg(-guaa)cgcaa-gcc S.acidoc.1 1850 agac-uccugacggauugggguagggag|aguagg(-----ac-caccgu S.acidoc.1 1900 ------)ccuacc|-caagcacu-caagccCUUGGAGAG-CC(GUAAC)G S.acidoc.1 1950 G|UGAGAAGAG--ggcga-aggugugaug-|ggc|cuucc(--guua)gg S.acidoc.1 2000 aggguu-cuccugaucccua-|guccccaugaaaagggagucuggaa--- S.acidoc.1 2050 cgaucccggga--g|A|CCGUACCUAGAACC(GACACU)GG|UGCCCCUG S.acidoc.1 2100 GG(ugagaag)CCCAA-GGCGu||cuGAGG-GGUAACCCAGGCUAGGGAA S.acidoc.1 2150 CUCGGCAAAUUAGCCCCGUAAC(UUCG)GGAGAAGGGGU|GCCUAU---c S.acidoc.1 2200 gugguu-u---(--aaca-)---aagccacg--AUAGGU|C(GCA)GUGA S.acidoc.1 2250 CCAGAGGGACC|UGACUGU(UUAAUAAAA)ACAUAGGUCCCCG|CUAGCC S.acidoc.1 2300 C(GAA-A)GGGUGUGUACGGGGGCUAAAUCCUGGCCACU|GGUGGUUGGU S.acidoc.1 2350 UAA----auccggg---(uuca)----accggg----cGAAGCC|CCACC S.acidoc.1 2400 GAAG|GCC|GGGGGU(AACUCUG)ACCCUC|U(UAA)GGUAGCCAAAUGC S.acidoc.1 2450 CUU|GCCGGG(UA-----AGU)UCCGGC|GCGCAUGAAUGGAUCAACGCG S.acidoc.1 2500 GUCCCUACUGUCCCAGCCUGGG-GCCUC|GUGAACGC|-CCUGA-GCCGG S.acidoc.1 2550 (-UGCACA-GU)CCGGCAUCUCCCUACACCGAGAGAAGACCCCGUGG|AG S.acidoc.1 2600 CUUCACCGC|AGCCUGGCGUU|GUCCCUCGGGCGUUUAUGCGUAGAGUAG S.acidoc.1 2650 GUGGGAGGGGUCG---AACCUUGCCU(UUCGg)GGGCAGGG--GACCCGA S.acidoc.1 2700 AAGUGAAACACCACC|CAUGGACGCUCGAGGGACuaac----cucuc(-g S.acidoc.1 2750 aaa-)gagag---gaacAACGUCAGGUGGGCGGUUCGGCUG(GGG)CGGC S.acidoc.1 2800 AC|UCCCGC(GAAAAGAUAAC)ACGGGA|G|C|CCAAAGGUCGGC|UCAG S.acidoc.1 2850 GCGGU(ACAGAAC)GCCGCCGUAGA|GC(G|C-AAGG)GCAAAAGCCGGC S.acidoc.1 2900 CUGACGUGACCCU(uccaaguac-)GGGGUCACGACGC(GAAA)GCGGGG S.acidoc.1 2950 |CCUAGCGAACGCUCGuGC-CCC(-cacacgug)GGG|GCCGGGC-auga S.acidoc.1 3000 c|aga--aAAGUUACCC|CGGG|GAUAACAG|GGUCGUCGCGGGCGAGA( S.acidoc.1 3050 GCUCACA)UCGACCCCGCGGUUUGCUACAUCGAUGUC|GGCU|C|UUCCC S.acidoc.1 3100 |ACCC|UGGAGGU(GCAGCU)GCCUCCAAGGGU|AGGGC(UGCCC)GCCC S.acidoc.1 3150 GUUAAAGGGGAGCGUGAGCUGGGUUUAGACC|GUC(GCGA)GACAGGUCG S.acidoc.1 3200 GACUCUAAGG|GUAGGGAG-|UG-CGGACCGCUU|GA|GGGGAA-GGAAC S.acidoc.1 3250 CCC(UAGUAC(GAGA)GGAAC)AGGGUUC|CGGGGCCUCCAGUUUACCGG S.acidoc.1 3300 U|UGUCC-(GGUA)-GGGCA-auGCCGGGCA-GCCGCGCCCUG-AGGGGU S.acidoc.1 3350 AACCGCU(GAAAGCAUCUA)AGCGGGAACCCCUCCCC|UAA-AAGAGGCG S.acidoc.1 3400 GUC|a-|ggc-----------------(guua-)---------------- S.acidoc.1 3450 -gcc--ggggc|cu|UCCCC(UAGAAGA)GGGGGUUGAUGG|GGUGG|GG S.acidoc.1 3500 AUGUAAGCUCCaagguu-(guaa--)-gaccgaGGAGU|UUAGUCC|G|C S.acidoc.1 3550 CACUCCCAaucaggcucc--|ccccugg---------||||| S.acidoc.2 0 |----gaguucuacccagggg--ccGAAGCCUCCCGGUGGAUG|GCUCGG S.acidoc.2 50 |CUCGGG-|ca|cCGAAGAAGGG|CGCG(GCAAGC)A|GCGAAAUGCUCG S.acidoc.2 100 GGU|GAGGC(GCAAGCA)GCCGUU-GACCCCGAGGUC|CC-CUAAUGGG( S.acidoc.2 150 AUAU-)CCU|gccgg---------(guuu-)---------cc-ggc-gcu S.acidoc.2 200 cccgguu(---uau------)-aacugggaguGGGAAC|CCCCCGAACG| S.acidoc.2 250 GA(AACA)UCUUAGUAGGGGGAGGAAAAGAAAUC(AA--UU)GAGA-U|C S.acidoc.2 300 CCCUGAGUAGG(GGCGA)CCGAAAGGGGGACAGCCCAaacuaaa-ccug- S.acidoc.2 350 ccgau(gauaa)gucgg-uggg-gaugugguguuac-gaccucuagccu- S.acidoc.2 400 -gagg(uucga)ccuc-ggcuuuccuaaccuaucuagcc-GAAcucccc- S.acidoc.2 450 (uggaac)-gggggcc|c(aua)gaGGG(UGAAAGC)CCCGUA-ggcuaa S.acidoc.2 500 agauagguggaaag---uggcuaga-gguaGAGUACCAUCCCC(---ugg S.acidoc.2 550 uuu)GGGGGUGGGAAG-UUAGGGG(Acacgug-)CCUCUAAGGCUAAAUA S.acidoc.2 600 ugu-CCCGAGACCGAUAGCAAACUAAGUACC(GUGA)GGGAAAGCUGAAA S.acidoc.2 650 AGAACCCC(ggaag)GGGGAGUGCCAAAGAGCCUGAAACCGGGUGGUUau S.acidoc.2 700 a-cag-gguguggcuc--gaaagaa--gugaacccuuccgaaggaa-agg S.acidoc.2 750 gc(gcaa-)gcccu---uaguacgag-gaagggc-gaucg--gggucacg S.acidoc.2 800 ccuUUCGU(CUUGAAA|C)ACGG|GCCGGGGAGUUCAC-AUCAGUGGCGA S.acidoc.2 850 GCUUAAggag(--auuau)cuccGAAGGCAUAGG(GAAA)CCAag-ugcc S.acidoc.2 900 cgcagccuag-(uuu-)-cuaggcgaggggcagGGUCU(guca-)GGGCC S.acidoc.2 950 UGAAGCCACUGAUGUGAGGCUAGAAACCGGGCGAUCUAGUCCGGGG|CAG S.acidoc.2 1000 GCUGAAGGUGGGG(GAAA)CCCCACUGGAGGGCCGaauaggg-guucuga S.acidoc.2 1050 (cgugca-au)uc-guu|cccuuGACCUCGGACUAGGGGC(AAAAG)ACC S.acidoc.2 1100 AAUCUAGCCCGG-UGAUAGCUAGUUCCCCCCGAAAUGCGU(CCUA)GCGC S.acidoc.2 1150 AGC|CUCCCUaaa-|ggc|-agCUCGCG|GGGUAG|AGUGACAGAUCGGG S.acidoc.2 1200 GGC--UC|CAGGC(gaaa-)GCCUG-GG-GCUUCCGGUCUAACUCCGAAC S.acidoc.2 1250 C|CACGAGcgccga-aga|aGGGGGG-AGUGGGUCACU-C-GGC(G-UAA S.acidoc.2 1300 G)GUUG-GGUGGCAAAAGGG(GAACAA)CCCAGACCUG-GGUUAAGGC|C S.acidoc.2 1350 CCAAAGUCCCGGCUA-AGUGcc----aacgAAAAGGCGUCUCCAGCCUUA S.acidoc.2 1400 GACAGCGGGAAGGUGGGC(CCAGCAGCA)GCCAUCCU|C(UAA)G|GAGU S.acidoc.2 1450 GC(GUAACA)GC|UCACCCGCCGAGGCUGGAGGC|CCUAAAGAUUGGUCG S.acidoc.2 1500 GGGCUCAAGCCGGG|C|GCCGAGACC|CAGG|agggguucuc(uacua-) S.acidoc.2 1550 gag-aucc-ucuGGUAGGGGGG|CGCUGUGAU-GGGGUAGAAGGUGGG-U S.acidoc.2 1600 C(GUGA)GAUCCACUGG|ACCCGUCACAGGUGCAGAUCCCGGC|GGUAGU S.acidoc.2 1650 AACagcg-aaGGGGGG(UGAGAA-U)CCC-CCU|CGCCGGAA-GGGCAAG S.acidoc.2 1700 GGAUUCCCGGCAACG-(UUCGU)CA|GCCGGGAGUUAGC|CGG|-UCCUA S.acidoc.2 1750 AGGUAGG-GCC(UAAUA)GGU--ACCUACCGAAA-GGGAAAGGGG(UUAA S.acidoc.2 1800 CAUU)CCCCU|GC-cucccggg-uagg---ugcg(-guaa)cgcaa-gcc S.acidoc.2 1850 agac-uccugacggauugggguagggag|aguagg(-----ac-caccgu S.acidoc.2 1900 ------)ccuacc|-caagcacu-caagccCUUGGAGAG-CC(GUAAC)G S.acidoc.2 1950 G|UGAGAAGAG--GGCga-aggugugaug-|ggc|cuucc(--guua)gg S.acidoc.2 2000 aggguu-cuccugaucccua-|guccccaugaaaagggagucuggaa--- S.acidoc.2 2050 cgaucccggga--g|A|CCGUACCUAGAACC(GACACU)GG|UGCCCCUG S.acidoc.2 2100 GG(ugagaag)CCCAA-GGCGu||cuGAGG-GGUAACCCAGGCUAGGGAA S.acidoc.2 2150 CUCGGCAAAUUAGCCCCGUAAC(UUCG)GGAGAAGGGGU|GCCUAU---c S.acidoc.2 2200 gugguu-u---(--aaca-)---aagccacg--AUAGGU|C(GCA)GUGA S.acidoc.2 2250 CCAGAGGGACC|UGACUGU(UUAAUAAAA)ACAUAGGUCCCCG|CUAGCC S.acidoc.2 2300 C(GAA-A)GGGUGUGUACGGGGGCUAAAUCCUGGCCACU|GGUGGUUGGU S.acidoc.2 2350 UAA----auccggg---(uuca)----accggg----cGAAGCC|CCACC S.acidoc.2 2400 GAAG|GCC|GGGGGU(AACUCUG)ACCCUC|U(UAA)GGUAGCCAAAUGC S.acidoc.2 2450 CUU|GCCGGG(UA-----AGU)UCCGGC|GCGCAUGAAUGGAUCAACGCG S.acidoc.2 2500 GUCCCUACUGUCCCAGCCUGGG-GCCUC|GUGAACGC|-CCUGA-GCCGG S.acidoc.2 2550 (-UGCACA-GU)CCGGCAUCUCCCUACACCGAGAGAAGACCCCGUGG|AG S.acidoc.2 2600 CUUCACCGC|AGCCUGGCGUU|GUCCCUCGGGCGUUUAUGCGUAGAGUAG S.acidoc.2 2650 GUGGGAGGGGUCG---AACCUUGGUU(UCGG-)GGGCAGGG--GACCCGA S.acidoc.2 2700 AAGUGAAACACCACC|CAUGGACGCUCGAGGGACuaac----cucuc(-g S.acidoc.2 2750 aaa-)gagag---gaacAACGUCAGGUGGGCGGUUCGGCUG(GGG)CGGC S.acidoc.2 2800 AC|UCCCGC(GAAAAGAUAAC)ACGGGA|G|C|CCAAAGGUCGGC|UCAG S.acidoc.2 2850 GCGGU(ACAGAAC)GCCGCCGUAGA|GC(G|C-AAGG)GCAAAAGCCGGC S.acidoc.2 2900 CUGACGUGACCCU(uccaaguac-)GGGGUCACGACGC(GAAA)GCGGGG S.acidoc.2 2950 |CCUAGCGAACGCUCGUGC-CCC(-cacacgug)GGG|GCCGGGC-auga S.acidoc.2 3000 c|aga--aAAGUUACCC|CGGG|GAUAACAG|GGUCGUCGCGGGCGAGA( S.acidoc.2 3050 GCUCACA)UCGACCCCGCGGUUUGCUACAUCGAUGUC|GGCU|C|UUCCC S.acidoc.2 3100 |ACCC|UGGAGGU(GCAGCU)GCCUCCAAGGGU|AGGGC(UGCCC)GCCC S.acidoc.2 3150 GUUAAAGGGGAGCGUGAGCUGGGUUUAGACC|GUC(GCGA)GACAGGUCG S.acidoc.2 3200 GACUCUAAGG|GUAGGGAG-|CUCGGGACCGCUU|GA|GGGGAAGGGAAC S.acidoc.2 3250 CCC(UAGUAC(GAGA)GGAAC)AGGGUUC|CGGGGCCUCCAGUUUACCGG S.acidoc.2 3300 U|UGUCC-(GGUA)-GGGCA-auGCCGGGCA-GCCGCGCCCUG-AGGGGU S.acidoc.2 3350 AACCGCU(GAAAGCAUCUA)AGCGGGAACCCCUCCCC|UAA-AAGAGGCG S.acidoc.2 3400 GUC|a-|ggc-----------------(guua-)---------------- S.acidoc.2 3450 -gcc--ggggc|cu|UCCCC(UAGAAGA)GGGGGUUGAUGG|GGUGG|GG S.acidoc.2 3500 AUGUAAGCUCCaagguu-(guaa--)-gaccgaGGAGU|UUAGUCC|G|C S.acidoc.2 3550 CACUCCCAaucaggcucc--|ccccuggu--------||||| S.acidoc.3 0 |----------uacccagggg--CCGAAGCCUCCCGGUGGAUG|GCUCGG S.acidoc.3 50 |CUCGGG-|ca|cCGAAGAAGGG|CGCG(GCAAGC)A|GCGAAAUGCUCG S.acidoc.3 100 GGU|GAGGC(GCAAGCA)GCCGUU-GACCCCGAGGUC|CC-CUAAUGGG( S.acidoc.3 150 AUAU-)CCU|gccgg---------(guuu-)---------cc-ggc-gcu S.acidoc.3 200 cccgguu(---uau------)-aacugggaguGGGAAC|CCCCCGAACG| S.acidoc.3 250 GA(AACA)UCUUAGUAGGGGGAGGAAAAGAAAUC(AA--UU)GAGA-U|C S.acidoc.3 300 CCCUGAGUAGG(GGCGA)CCGAAAGGGGGACAGCCCAaacuaaa-ccug- S.acidoc.3 350 ccgau(gauaa)gucgg-uggg-gaugugguguuac-gaccucuagccu- S.acidoc.3 400 -gagg(uucga)ccuc-ggcuuuccuaaccuaucuagcc-GAAcucccc- S.acidoc.3 450 (uggaac)-gggggcc|c(aua)gaGGG(UGAAAGC)CCCGUA-ggcuaa S.acidoc.3 500 agauagguggaaag---uggcuaga-gguaGAGUACCAUCCCC(---ugg S.acidoc.3 550 uuu)GGGGGUGGGAAG-UUAGGGG(Acacgug-)CCUCUAAGGCUAAAUA S.acidoc.3 600 ugu-CCCGAGACCGAUAGCAAACUAAGUACC(GUGA)GGGAAAGCUGAAA S.acidoc.3 650 AGAACCCC(GGAAG)GGGGAGUG-CAAAGAGCCUGAAACCGGGUGGUUau S.acidoc.3 700 a-cag-gguguggcuc--gaaagaa--gugaacccuuccgaaggaaaggg S.acidoc.3 750 gc(gcaa-)gcccu---uaguacgag-gaagggc-gaucg--gggucacg S.acidoc.3 800 ccUUUCGU(CUUGAAA|C)ACGG|GCCGGGGAGUUCAC-AUCAGUGGCGA S.acidoc.3 850 GCUUAAggag(--auuau)cuccGAAGGCAUAGG(GAAA)CCAag-ugcc S.acidoc.3 900 cgcagccuag-(uuu-)-cuaggcgaggggcagGGUCU(guca-)GGGCC S.acidoc.3 950 UGAAGCCACUGAUGUGAGGCUAGAAACCGGGCGAUCUAGUCCGGGG|CAG S.acidoc.3 1000 GCUGAAGGUGGGG(GAAA)CCCCACUGGAGGGCCGaauaggg-guucuga S.acidoc.3 1050 (cgugca-au)uc-guu|cccuuGACCUCGGACUAGGGGC(AAAAG)ACC S.acidoc.3 1100 AAUCUAGCCCGG-UGAUAGCUAGUUCCCCCCGAAAUGCGU(CCUA)GCGC S.acidoc.3 1150 AGC|CUCCCUaaa-|ggc|-agCUCGCG|GGGUAG|AGugacAGAUCGGG S.acidoc.3 1200 GGC--UC|CAGGC(gaaa-)GCCUG-GG-GCUUCCGGUCUAACUCCGAAC S.acidoc.3 1250 C|CACGAGcgccga-aga|aGGGGGG-AGUGGGUCACU-C-GGC(G-UAA S.acidoc.3 1300 G)GUUG-GGUGGCAAAAGGG(GAACAA)CCCAGACCUG-GGUUAAGGC|C S.acidoc.3 1350 CCAAAGUCCCGGCUA-AGUGcc----aacgAAAAGGCGUCUCCAGCCUUA S.acidoc.3 1400 GACAGCGGGAAGGUGGGC(CCAGCAGCA)GCCAUCCU|C(UAA)G|GAGU S.acidoc.3 1450 GC(GUAACA)GC|UCACCCGCCGAGGCUGGAGGC|CCUAAAGAUUGGUCG S.acidoc.3 1500 GGGCUCAAGCCGGG|C|GCCGAGACC|CAGG|agggggucuc(uacua-) S.acidoc.3 1550 gagauccu--cuGGUAGGGGGG|CGCUGUGAU-GGGGUAGAAGGUGGG-U S.acidoc.3 1600 C(GUGA)GAUCCACUGG|ACCCGUCACAGGUGCAGAUCCCGGC|GGUAGU S.acidoc.3 1650 AACagcg-aaGGGGGG(UGAGAA-U)CCC-CCU|CGCCGGAA-GGGCAAG S.acidoc.3 1700 GGAUUCCCGGCAACG-(UUCGU)CA|GCCGGGAGUUAGC|CGG|-UCCUA S.acidoc.3 1750 AGGUAGG-GCC(UAAUA)GGU--ACCUACCGAAA-GGGAAAGGGG(UUAA S.acidoc.3 1800 CAUU)CCCCU|GC-cucccggg-uagg---ugcg(-guaa)cgcaa-gcc S.acidoc.3 1850 agac-uccugacggauugggguagggag|aguagg(-----ac-caccgu S.acidoc.3 1900 ------)ccuacc|-caagcacu-caagccCUUGGAGAG-CC(GUAAC)G S.acidoc.3 1950 G|UGAGAAGAG--ggcga-aggugugaug-|ggc|cuucc(--guua)gg S.acidoc.3 2000 aggguu-cuccugaucccua-|guccccaugaaaagggagucuggaa--- S.acidoc.3 2050 cgaucccggga--g|A|CCGUACCUAGAACC(GACACU)GG|UGCCCCUG S.acidoc.3 2100 GG(ugagaag)CCCAA-GGCGU||CUGAGG-GGUAACCCAGGCUAGGGAA S.acidoc.3 2150 CUCGGCAAAUUAACCCCGUAAC(UUCG)GGAGAAGGGGU|GCCUAU---c S.acidoc.3 2200 gugguu-u---(--aaca-)---aagccacg--AUAGGU|C(GCA)GUGA S.acidoc.3 2250 CCAGAGGGACC|UGACUGU(UUAAUAAAA)ACAUAGGUCCCCG|CUAGCC S.acidoc.3 2300 C(GAA-A)GGGUGUGUACGGGGGCUAAAUCCUGGCCACU|GGUGGUUGGU S.acidoc.3 2350 UAA----auccggg---(uuca)----accggg----cGAAGCC|CCACC S.acidoc.3 2400 GAAG|GCC|GGGGGU(AACUCUG)ACCCUC|U(UAA)GGUAGCCAAAUGC S.acidoc.3 2450 CUU|GCCGGG(UA-----AGU)UCCGGC|GCGCAUGAAUGGAUCAACGCG S.acidoc.3 2500 GUCCCUACUGUCCCAGCCUGGG-GCCUC|GUGAACGC|-CCUGA-GCCGG S.acidoc.3 2550 (-UGCACA-GU)CCGGCAUCUCCCUACACCGAGAGAAGACCCCGUGG|AG S.acidoc.3 2600 CUUCACCGC|AGCCUGGCGUU|GUCCCUCGGGCGUUUAUGCGUAGAGUAG S.acidoc.3 2650 GUGGGAGGGGUCG---AACCUGUCCU(UUCG-)GGGGCAGG-GGACCCGA S.acidoc.3 2700 AAGUGAAACACCACC|CAUGGACGCUCGAGGGACuaac----cucuc(-g S.acidoc.3 2750 aaa-)gagag---gaacAACGUCAGGUGGGCGGUUCGGCUG(GGG)CGGC S.acidoc.3 2800 AC|UCCCGC(GAAAAGAUAAC)ACGGGA|G|C|CCAAAGGUCGGC|UCAG S.acidoc.3 2850 GCGGU(ACAGAAC)GCCGCCGUAGA|GC(G|C-AAGG)GCAAAAGCCGGC S.acidoc.3 2900 CUGACGUGACCCU(uccaaguac-)GGGGUCACGACGC(GAAA)GCGGGG S.acidoc.3 2950 |CCUAGCGAACGCUCGUGC-CCC(-cacacgug)GGG|GCCGGGC-auga S.acidoc.3 3000 c|aga--aAAGUUACCC|CGGG|GAUAACAG|GGUCGUCGCGGGCGAGA( S.acidoc.3 3050 GCUCACA)UCGACCCCGCGGUUUGCUACAUCGAUGUC|GGCU|C|UUCCC S.acidoc.3 3100 |ACCC|UGGAGGU(GCAGCU)GCCUCCAAGGGU|AGGGC(UGCCC)GCCC S.acidoc.3 3150 GUUAAAGGGGAGCGUGAGCUGGGUUUAGACC|GUC(GCGA)GACAGGUCG S.acidoc.3 3200 GACUCUAAGG|GUAGGGAGc|UG-CGGACCGCUU|GA|GGGGAA-GGAAC S.acidoc.3 3250 CCC(UAGUAC(GAGA)GGAAC)AGGGUUC|CGGGGCCUCCAGUUUACCGG S.acidoc.3 3300 U|UGUCC-(GGUA)-GGGCA-AUGCCGGGCA-GCCGCGCCCUG-AGGGGU S.acidoc.3 3350 AACCGCU(GAAAGCAUCUA)AGCGGGAACCCCUCCCC|UAA-AAGAGGCG S.acidoc.3 3400 GUC|a-|ggc-----------------(guua-)---------------- S.acidoc.3 3450 -gcc--ggggc|cu|UCCCC(UAGAAGA)GGGGGUUGAUGG|GGUGG|GG S.acidoc.3 3500 AUGUAAGCUCCaagguu-(guaa--)-gaccgaGGAGU|UUAGUCC|G|C S.acidoc.3 3550 CACUCCCAaucaggcucc--|ccccugg---------||||| S.azoricus 0 |-----------aacccagggc-ACCAUGCCGCCCGGUGGAUG|GCUCGG S.azoricus 50 |CUCGGG-|cg|cCGAAGAAGGG|CGUG(GCAAGC)G|GCGAAAUGCCCG S.azoricus 100 GGU|GAGGC(GCAACGA)GCCGUA-GACCCCGGGAUU|CC-CGAAUGGG( S.azoricus 150 AUAU-)CCU|gccgg---------(gucu-)---------cc-ggc-gcu S.azoricus 200 ccc----(---ucau-----)-----gggagcGGGAAC|CCCCCGAACG| S.azoricus 250 GA(AACA)UCUUAGUAGGGGGAGGAAAAGAAAUC(AA--UC)GAGA-U|C S.azoricus 300 CCCUGAGUAGG(GGCGA)CCGAAAGGGGGACAGCCCAaaccaaa-uccg- S.azoricus 350 ucggc(gaaaa)gucgg-cgga-gaugugguguuaucggcccuagguc-- S.azoricus 400 -aggg(gcaa-)ccc--aaccucccuagcccaccuagcc-GAAcucucc- S.azoricus 450 (uggaac)-ggagggc|c(aaa)gaGGG(UGAUAGC)CCCGUA-ggcuaa S.azoricus 500 aggugggugagagg---ugaccuag-ggcaGAGUACCAUCCCC(---ugg S.azoricus 550 uuu)GGGGGUGGGAAG-UUGGGGG(Acaugcg-)CCUCCAAGGCUAAAUA S.azoricus 600 cgu-CCCGAGACCGAUAGCGAACUAAGUACC(GUGA)GGGAAAGCUGAAA S.azoricus 650 AGAACCCC(GGGAG)GGGGAGUG-AAAAGAGCCUGAAACCGGGUGGUUau S.azoricus 700 a-cag-ggcauggccc--gaaagag--augaguccucccgaaggaaaggg S.azoricus 750 ac(gcga-)guccu---gaguacgag-ggaggag-gaucg--gggucaug S.azoricus 800 ccUUUCGU(CUUGAAA|C)ACGG|GCCGGGGAGUUCAU-GCCAGUGGCGA S.azoricus 850 GCCUAAgggg(--gucaa)ccccGAAGGCGUAGG(GAAA)CCGaa-cgcc S.azoricus 900 cgcagccggg-(naaa)-cccggcgaggggcggGGUCU(guca-)GGGCC S.azoricus 950 UGAAGUCACUGGCAUGAGGCUAGAAACCGGGCGAUCUAGUCCGGGG|CAG S.azoricus 1000 GCCGAAGGCGGGG(GAAA)CCCCGCUGGAGGGCCGaauaggg-guucuga S.azoricus 1050 (cgugca-au)uc-guu|ccccuGACCCCGGACUAGGGGC(AAAAG)ACC S.azoricus 1100 AAUCUAGCCCGG-UGAUAGCUAGUUCCCCCCGAAAUGCGU(CCUA)GCGC S.azoricus 1150 AGC|CUCCCUgga-|ggu|-cgCCCGCG|GGGUAG|AGugacAGAUCGGG S.azoricus 1200 GGC--UC|CAAGC(gaaa-)GCUUG-GG-GCUCUCGGUCUAACUCCGAAC S.azoricus 1250 C|UACGGGcaccga-aga|aGGGGGG-AGUGGGUCACC-C-GGC(G-UAA S.azoricus 1300 G)GUUG-GGUGGCAAAAGGG(GAACAA)CCCAGACCCG-GGUUAAGGC|C S.azoricus 1350 CCAAAAUGCCGGCUA-AGUGcc----aaucGAAGGGCGUCCCCAGCCCCA S.azoricus 1400 GACAGCGGGAAGGUGGGC(CCAGCAGCA)GCCAUCCU|C(UAA)G|GAGU S.azoricus 1450 GC(GUAACA)GC|UCACCCGCCGAGGCUGGGGGC|CCCGAAGAUUGGUCG S.azoricus 1500 GGGCUCAAGCCGGC|U|GCCGAGACC|CGGG|uaguggggcu(cacug-) S.azoricus 1550 agccucac--uaGGUAGGGGGG|CGCUGCGGU-GGGGUAGAAGGUGGG-C S.azoricus 1600 C(GUGA)GGUCCGCUGG|ACUCGCCGCAGGUGCAGAUCCCGGC|GGCAGU S.azoricus 1650 AACagcg-aaGAGGGG(UGAGAA-U)CCC-CUC|CGCCGGAA-GGGCAAG S.azoricus 1700 GGUUUCCUGACAAUG-(GUCGU)CA|GUCAGGAGUUAGC|CGG|-UCCUA S.azoricus 1750 AGGCAGG-GCC(CAAUA)GGU--ACCUGCCGAAA-GGGAAAGGGG(UUAA S.azoricus 1800 UAUU)CCCCU|GC-cuccccug-uagg---ugcg(-guaa)cgcaa-gcc S.azoricus 1850 gggc-uccugacggaucgggauaggggg|aguagg(-----gc-aaccgc S.azoricus 1900 ------)ccuauc|-caagcacu-uaagccCCUGGAGAA-CC(GUAAC)G S.azoricus 1950 G|UGAGAAGGG--ggcga-aggugugaug-|ggc|ccucc(--guua)gg S.azoricus 2000 aggguu-ccccugaauccug-|guccccaugaaaagggagcccggaa--- S.azoricus 2050 cgaucggggga--g|A|CCGUACCUAGAACC(GACACA)GG|UGCCCCUG S.azoricus 2100 GG(ugagaag)CCCAA-GGCGU||CUGGGG-GGUAACCCAGGCUAGGGAA S.azoricus 2150 CUCGGCAAAUUAGCCCUGUACC(UUCG)GAAGAAGGGGU|GCCUAU---c S.azoricus 2200 aggguc-g---(--caaaa)---cggcccug--AUAGGU|C(GCA)GUGA S.azoricus 2250 CAAGGGGGACC|UGACUGU(UUAAUAAAA)ACAUAGGUCCCCG|CUAGCC S.azoricus 2300 C(GAA-A)GGGUGUGUACGGGGGCUAAAUCCUGGCCACU|GGCGGUCGGU S.azoricus 2350 GAA----acccggg---(ucca)----accggg----cGAAGCC|CCGCU S.azoricus 2400 GAAG|GCC|GGGGGU(AACUCUG)ACCCUC|U(UAA)GGUAGCCAAAUGC S.azoricus 2450 CUU|GCCGGG(UA-----AGU)UCCGGC|GCGCAUGAAUGGAUCAAAGCG S.azoricus 2500 GUCCCCACUGUCCCAGCCUGGG-GCCCC|GUGAACGC|-CCUGA-GCCGG S.azoricus 2550 (-UGCACA-GU)CCGGCAACCCCCUACACCGAGAGAAGACCCCGUAG|AG S.azoricus 2600 CUUCACCGC|AGCCUGGCAUU|GUCCUCCGGGCAUUCAUGCGUAGCGUAG S.azoricus 2650 GUGGGAGGGGUCG---AACCCACUCC(UUCG-)GGGGUGGG-GGACCCGA S.azoricus 2700 AAGUGAAACACCACC|CAUGAGUGCUCGGAGGACuaac-----cccu(-- S.azoricus 2750 uau-)gggg----gaacAGUGUCAGGUGGGCGGUUCGGCUG(GGG)CGGC S.azoricus 2800 AC|UCCCGC(GAAAAGAUAAC)ACGGGA|G|C|CCAAAGGUCGGC|UCAG S.azoricus 2850 GCGGU(ACAGAAC)GCCGCCGUAGA|GU(G|C-AAGG)GCAAAAGCCGGC S.azoricus 2900 CUGACGAGGCCCU(cccaaguac-)GGGGCCUCGACGC(GAAA)GCGCGG S.azoricus 2950 |CCUAGCGAACGCUCGUGC-CCC(-cacguaug)GGG|GCCGGGC-auga S.azoricus 3000 c|aga--aAAGUUACCU|CGGG|GAUAACAG|GGUCGUCGCGGGCGAGA( S.azoricus 3050 GCUCACA)UCGACCCCGCGGUUUGCUACAUCGAUGUC|GGCU|C|UUCCC S.azoricus 3100 |ACCC|UGGGGGU(GCAGCU)GCCCCCAAGGGU|AGGGC(UGCCC)GCCC S.azoricus 3150 GUUAAAGGGGAGCGUGACGUGGGUUUAGACC|GUC(GCGA)GACAGGUCG S.azoricus 3200 GACUCUAAGG|GUAGGGGG-|UG-CGGACCGCCU|GC|GGGAAA-GGAAC S.azoricus 3250 CCC(UAGUAC(GAGA)GGAAC)AGGGUUC|CGGGGCCUCCAGUUUACCGG S.azoricus 3300 U|UGUCC-(GGUA)-GGGCA-CUGCCGGGCA-GCCGCGCCCUG-AGGGGU S.azoricus 3350 AACCGCU(GAAAGCAUCUA)AGCGGGAACCCCUCCCC|UAA-AAGAGGCG S.azoricus 3400 GUC|nn|nnnnnnnnnnnn--------(nnn--)--------nnnnnnnn S.azoricus 3450 nnnn--nnnnn|nn|nnnnn(nnnnnnn)nnnnnnnnnnnn|nnnnn|nn S.azoricus 3500 nnnnnnnnnnnnnnnnnn(nnnnn-)nnnnnnnnnnnn|nnnnnnn|n|n S.azoricus 3550 nnnnnnnnnnnnnnnnnnnn|nnnnnnnnnnn-----||||| A.infernus 0 |----------gcgcaaggggc-ACCAAGCCAGCCGGUGGAUG|GCUCGG A.infernus 50 |CUCGGG-|cg|cCGANGAAGGG|CGCG(GCAAGC)-|GCGAAAUGCCCG A.infernus 100 GGG|UAGGC(GCAAGAG)CCCGUU-GAUCCCGGGAUC|CCCCGAAUGGG( A.infernus 150 ACCU-)CCU|gcccc---------(auuu-)---------gg-ggc-gca A.infernus 200 cccgu--(--guaaaa-a--)---gcgggugcGGGAAC|CCCCCGAACG| A.infernus 250 GA(AGCA)UCUUAGUAGGGGGAGGAGGAGAAAUC(AAcuCU)GAGA-U|C A.infernus 300 CCCCGAGUAGG(CGCGA)CCGAAAGGGGGACAGCCCAaaccaaa-ccug- A.infernus 350 ccggc(gauaa)gccgg-uggg-gaugugguguuauaggcccuaggucu- A.infernus 400 -gggg(gcaa-)cccc-agccucccuagcuugccuagcc-GAAcucccu- A.infernus 450 (uggaau)-agggggc|c(aaa)gaGGG(UGACAGC)CCCGUA-ggcgaa A.infernus 500 aggcaagugggagg---cgaccuag-ggcaGAGUACCAUCCCC(---ugg A.infernus 550 uuu)GGGGGUGGGAAG-UUGGGGG(Acaugug-)CCUCCAUGGCUAAAUA A.infernus 600 cgu-CCCGAGACCGAUAGCGAACUAAGUACC(GUGA)GGGAA-GCUGAAA A.infernus 650 AGCACCCC(GGAAG)GGGG-GUG-AAAAGUGCCUGAAACCGGCUGGCUac A.infernus 700 a-cag-gguagggcuc--gaaagga--gugaagcccuccgaaggaaggag A.infernus 750 -c(gcaa-)gcccu---uaguacgag-gagggug-gaccg--ggguccua A.infernus 800 ccUUUCGU(CUUGAAA|C)ACGG|GCCGGGGAGUUCAU-GCCAGUGGCGA A.infernus 850 GCCUAAgggg(--gucaa)ccccGAAGGCGUAGG(GAAA)CCGag-ugcc A.infernus 900 cgcaacccgg-(gaaa)-ccgggugaggggcagGGUCC(guca-)GGGCC A.infernus 950 UGGAGUCACUGGCAUGAGGCUAGAAACCGGGCGAUCUAGACCGGGG|CAG A.infernus 1000 GCCGAAGGCGGGG(GAAA)CCCCGCUGGAGGGCCGaauaggg-guucuga A.infernus 1050 (cgugca-au)uc-guu|cccuuGACCCCGGUCUAGGGGU(AAAAG)GCC A.infernus 1100 AAUCUAGCCCGG-UGAUAGCUAGUUCCCCCCGAAAUGCGU(CUUA)GCGC A.infernus 1150 AGC|CUCCCUgga-|ggu|-ggCCUGCG|GGGUAG|AGucacUGAUUGGG A.infernus 1200 GGC--UC|GAGGC(gaaa-)GCCUC-GG-GCUCCCAGUCAAACUCCGAAC A.infernus 1250 C|UGCAGGcgccug-aga|aGGGGGG-AGUGGGUCACC-C-GGC(G-UAA A.infernus 1300 G)GUUG-GGUGGCAAGAGGG(GAACAA)CCCAGACCUG-GGUUAAGGU|C A.infernus 1350 CCUAAGUGCUGGCUA-AGUGcc----auggGAAGAGCGUCCCCAGCCUUA A.infernus 1400 GACAGCGGGGAGGUGGGC(CCAGCAGCA)GCCAUCCU|C(UAA)G|GAGU A.infernus 1450 GC(GUAACA)GC|UCACCCGCCGAGGCUGGGGGC|CCUGAAGACUGGUCG A.infernus 1500 GGGCUCAAGCCAGC|C|ACCGAGACC|CAGG|ggguggggcu(cauug-) A.infernus 1550 agccc-ac--ucGGUAGGGGGG|CGUCGUGGU-GGGUCAGAAGGUGGG-C A.infernus 1600 C(GUGA)GGUCCACUGG|ACCCACCACGAGUGCCGAUCCCGGC|GGCAGU A.infernus 1650 AACagcg-aaGGAGGG(UGAGAA-U)CCC-UCC|CGCCGAAA-GGGCAAG A.infernus 1700 GGUUUCCCGGCAAUG-(GUCGU)CA|GCCGGGAGUUAGC|CGG|-UCCUA A.infernus 1750 AGGUAGG-GCU(UAACU)GGU--ACCUACCGAAA-GGGAAAGGGG(UUAA A.infernus 1800 UAUU)CCCCU|GC-cacggggg-uagg---ugcg(-gcaa)cgcaa-gcc A.infernus 1850 gggc-uccugacggaucgggcuagggag|ac----(--------guaa-- A.infernus 1900 ------)----gc|-caagcgcu-uaagccCCUGGAGAG-CC(GUAAU)G A.infernus 1950 G|UGAGAAGGG--gguga-aggcgugaug-|ggc|ccucc(--guua)gg A.infernus 2000 aggguu-cucccgaugccug-|guccccaugaaaagggagcccggaa--- A.infernus 2050 cgaucccccgu--g|A|CCGUACCUAGAACC(GACACA)GG|UGCCCCUG A.infernus 2100 GG(ugagaag)CCCAA-GGCGC||AUGGGG-GCUAACCCAGGCUAGGGAA A.infernus 2150 CUCGGCAAAUUGGCCCCGUACC(UUCG)GAAGAAGGGGU|GCCUAC---c A.infernus 2200 acagua-g---(--uaacc)---cugcugug--GUAGGU|U(GCA)GUGA A.infernus 2250 CCAGGGGGGCC|UGACUGU(UUAAUAAAA)ACAUAGGUCCCCG|CUAGCC A.infernus 2300 C(GUA-A)GGGUGUGAACGGGGGCUGAAUCCUGGCCACU|GGCGGUCGGU A.infernus 2350 GAA----acccggg---(uaca)----accggg----cGAAGCC|CCGCU A.infernus 2400 GAAG|GCC|GGGGGU(AACUCUG)ACCCUC|U(CAA)GGUAGCCAAAUGC A.infernus 2450 CUU|GCCGGG(CA-----AGU)UCCGGC|GUGCAUGAAUGGAUCAACUGG A.infernus 2500 GCCCCCACUGUCCCAGCCUGGG-GCCCC|GUGAACGC|-CCAGA-GUGGG A.infernus 2550 (-UUCACA-GU)CCCGCAACCCCCUACACCGAGAGAAGACCCCGUGG|AG A.infernus 2600 CUUCACUGC|AGCCUGGCGUU|GGUUCUCGGGCGCUCAUGCGUAGAGUAG A.infernus 2650 GUGGGAGGCGUCG---AAGCCGCCUC(UUCG-)GGGGCGGU-GGAGCCGA A.infernus 2700 AAGUGAAACACCACC|CAUGAGCGCUCGAGAACCuaac------ccc(-g A.infernus 2750 aga-)ggg-----ggacAGCGUCAGGUGGGCAGUUCGGCUG(GGG)CGGC A.infernus 2800 AC|UCCCGC(GAAAAGAUAAC)ACGGGA|G|C|CCAAAGGUCGGC|UCAG A.infernus 2850 GCGGU(ACAGAAC)GCCGCCGUAGA|GU(G|C-AAGG)GCAAAAGCCGGC A.infernus 2900 CUGACGAGUCCCU(ucaaagcac-)GGGGACUCGACGC(GAAA)GCGCGG A.infernus 2950 |CCUAGCGAACGCUCAUGC-CCC(-cgcacaug)GGG|GCUGGGC-augu A.infernus 3000 c|aga--aAAGUUACCC|CGGG|GAUAACAG|GGUCGUCGCGGGCGAGA( A.infernus 3050 GCUCCCA)UCGACCCCGCGGUUUGCUUCAUCGAUGUC|GGCU|C|UUCCC A.infernus 3100 |ACCC|AGGGGGU(GCAGCA)GCCCCCAAGGGU|AGGGC(UGCCC)GCCC A.infernus 3150 GUUAAAGGGGAACGUGAGCUGGGUUUAGACC|GUC(GCGA)GACAGGUCG A.infernus 3200 GACUCUAAGG|GUAGGGGG-|UG-CAGGCCGCCU|GA|GGGGAA-GGUAC A.infernus 3250 CCC(UAGUAC(GAGA)GGAAC)AGGGUAC|CGGGGCCUCUAGUUUACCGG A.infernus 3300 U|UGUCC-(GGCC)aGGGCA-GUGCCGGGCA-GCCACGCCUCG-AGGGGU A.infernus 3350 AAUCGCU(GAAAGCAUCUA)AGCGAGAACCCCUCCCC|AAA-AAGAGGCG A.infernus 3400 GCC|g-|ugcagguggcc---------(gaaa-)---------ggcugcc A.infernus 3450 ugcg--ggagc|cc|ACUCC(UAGAAGA)GGGGnnnnnnnn|nnnnn|nn A.infernus 3500 nnnnnnnnnnnnnnnnnn(nnnnn-)nnnnnnnnnnnn|nnnnnnn|n|n A.infernus 3550 nnnnnnnnnnnnnnnnnnnn|nnnnnnnnnnn-----||||| A.brierley 0 |----------ugcgcaagggc-ACCAAGCCAUUCGGUGGAUG|GCUCGG A.brierley 50 |CUCGGG-|cg|cCGAAGAAGGG|CGCG(GCAAGC)G|GCGAUAUGCCUG A.brierley 100 GGG|UAGGC(GCAAGCA)GCCUUU-GAUCCCAGGAUU|CC-CGAAUGGG( A.brierley 150 ACUU-)CCU|gccc----------(auua-)----------g-ggc-guu A.brierley 200 cccuu--(--ccaaaa-a--)---aagggaacGGGAAC|UCUCCGAACG| A.brierley 250 GA(AGCA)UCUUAGUAGGAGAAGGAAGAGAAAUC(AA--AA)GAGA-U|U A.brierley 300 CCCUGAGUAGG(GGCGA)UCGAAAGGGGAAUAGCCCAaaccaaa-ucug- A.brierley 350 ccggu(gauaa)gccgg-ugga-gaugugguguuau--gcuucuugccu- A.brierley 400 gcggg(uucga)cucgcaaccuuucuagcucaucuagcc-GAAcuccuc- A.brierley 450 (uggaau)-gagggac|c(aua)gaGGG(UGAUAGU)CCCGUA-gguuaa A.brierley 500 aggugaguggaagg---uggcaaga-agcaGAGUACCAUCCCC(---ugg A.brierley 550 uuu)GGGGGUGGGAAG-UUAGGGG(Acacgug-)CCUCUAAGGCUAAAUA A.brierley 600 cgu-CCCGAGACCGAUAGCGAACUAAGUACU(GUGA)AGGAAAGCUGAAA A.brierley 650 AGAACCCG(GGAA-)-GGGAGUG-AAAAGAGCCUGAAACCGAAUGGUUac A.brierley 700 a-cag-ggcagagcuc--gaaagag--augagcccuucuaaaggagggag A.brierley 750 ac(gcaa-)gucucu---aguacaag-gaagggu-gaucg--gaguucug A.brierley 800 cuUUUCGU(CUUGAAA|C)ACGG|GCCGGGGAGCUCAU-AUCAGUGGCAA A.brierley 850 GCCUAAgagg(--guaaa)ccucGAAGGCGUAGG(GAAA)CCGag-ugcu A.brierley 900 cgcaaccuag-(gcaa)-cuaggugaggagcagGGUCU(guca-)GGGCC A.brierley 950 UGGAGUCACUGGUAUGAGGCUAGAAACCGGGCGAUCUAGACCAGGG|CAG A.brierley 1000 GCCGAAGCGGGGG(GAAA)CUCCGGUGGAGGGCCGaaugggg-guucuga A.brierley 1050 (cgugca-au)uc-guu|cccuuGACCUUGGUCUAGGGGC(AAAAG)ACC A.brierley 1100 AAUCUAGCCCGG-UGAUAUCUAGUUCCUCCCGAAAUGCGC(CCUA)GCGC A.brierley 1150 AGC|CUCUCUgga-|ggu|-ggCUUGCG|GGGUAG|AGagacUGAUUGGG A.brierley 1200 GGU--UG|GUAGC(gaaa-)GCUAC-CG-AUUUCCAGUCAAACUCCGAAC A.brierley 1250 C|UGCAGGcaccug-aga|aGGAGGG-AGUGGAUCACU-C-AGC(G-UAA A.brierley 1300 G)GUCG-AGUGGUAAGAGGG(GAACAA)CCCCAACUCG-GGUUAAGGU|C A.brierley 1350 CCUAAGUACUGGCUA-AGUGca----aauuGAAAAGCGUCUCAAGCCCUA A.brierley 1400 GACAGCGGGUAGGUGGGC(CCAGCAGCA)GCCAUCCU|C(UAA)G|GAGU A.brierley 1450 GC(GUAACA)GC|UCACCCGCCGAGGCUUGAGGC|CUUUAAGACUGGUCN A.brierley 1500 GGGCUAAAGCCAGC|C|ACCGAGACC|CGAG|gggugagacu(cacug-) A.brierley 1550 agucuc-c--caGGUAGGGAGG|CGCCGUGAU-AGGGUAGAAGGUGGG-C A.brierley 1600 C(GAGA)GGUCCACUGG|ACCUUUCACGGGUGCAGAUCCCGGC|GGCAGU A.brierley 1650 AAUagcg-aaAGGGAG(UGAGAA-U)CUC-CCU|CGCCGAAA-GGGCAAG A.brierley 1700 GGUUUCCCGGCAAUG-(GUCGU)CA|GCCGGGAGUGAGC|CGG|-UCCUA A.brierley 1750 AGGUGAG-GCC(UAACU)GGU--ACUCACCGAAA-GGGAAAGGAG(UUAA A.brierley 1800 UAUU)CUCCU|GC-cucggagg-uagg---ugcg(-guaa)cgcaa-gcu A.brierley 1850 agac-uccugacgaaucgggguaggggg|ggugag(-----gu-caccgc A.brierley 1900 ------)cucacc|-caaguacu-uaagucCCUGGAGAG-CC(GUAAU)G A.brierley 1950 G|UGAGAAGGG--gacga-aggugcgaug-|ggc|uuucc(--guau)gg A.brierley 2000 agaguu-cuccugaucccug-|guucccaugaaaagggagucuagag--- A.brierley 2050 cgauccuccga--g|U|CCGUACCCAGAACC(GACACA)GG|UGCCCCUA A.brierley 2100 GG(ugagaag)CCUAA-GGCGU||CUGGGG-GUUAACUCAGUCUAGGGAA A.brierley 2150 CUCGGCAAAAUGGUCCUGUACC(UUCG)GAAGAAGGGAC|GCCUAC---c A.brierley 2200 acugua-g---(--uaacc)---cugcaaug--GUAGGU|C(GCA)GUGA A.brierley 2250 CCAGGGGGACC|UGACUGU(UUAAUAAAA)ACAUAGGUCCUCG|CUAGCC A.brierley 2300 C(GUA-A)GUGUGUGAACGGGGGCUGAAUCCUGGCCACU|GGCGGUCGGU A.brierley 2350 GAA----acccggg---(uaca)----accggg----cGAAGCC|CCGCU A.brierley 2400 GAAG|GCC|GGGGGU(AACUCUG)ACCCUC|U(CAA)GGUAGCCAAAUGC A.brierley 2450 CUU|GCCGGG(CA-----AGU)UCCGGC|GUGCAUGAAUGGAUCAACUGG A.brierley 2500 GCCCCCACUGUCCCAGCCUGGG-GCCCC|GUGAACGC|-CCAGA-GUGAG A.brierley 2550 (-UUCACA-GU)CCCGCAACCCCCUACACCGAGAGAAGACCCCGUGG|AG A.brierley 2600 CUUCACUGC|AGCCUGGCGUU|GGUUCUCGGGCGCUCAUGCGUAGAGUAG A.brierley 2650 GUGGGAGGCGUCG---AAGCCGCCUC(UUCG-)GGGGCGGU-GGAGCCGA A.brierley 2700 AAGUGAAACACCACC|CAUGAGCGCUCGAGAACCuaac------ccc(-g A.brierley 2750 aga-)ggg-----ggacAGCGUCAGGUGGGCAGUUCGGCUG(GGG)CGGC A.brierley 2800 AC|UCCCGC(GAAAAGAUAAC)ACGGGA|G|C|CCAAAGGCCGGC|UCAG A.brierley 2850 GCGGU(ACAGAAC)GCCGCCGUAGA|GU(G|C-AAGG)GCAAAAGCCGGC A.brierley 2900 CUGACGAGUCCCU(ucaaagcac-)GGGGACUCGACGC(GAAA)GCGGGG A.brierley 2950 |CCUAGCGAACGCUCAUGC-CCC(-cgcacaug)GGG|GCUGGGC-augu A.brierley 3000 c|aga--aAAGUUACCC|CGGG|GAUAACAG|GGUCGUCGCGGGCGAGA( A.brierley 3050 GCUCCCA)UCGACCCCGCGGUUUGCUUCAUCGAUGUC|GGCU|C|UUCCC A.brierley 3100 |ACCC|UGGGGGU(GCAGCA)GCCCCCAAGGGU|AGGGC(UGCCC)GCCC A.brierley 3150 GUUAAAGGGGAACGUGAGCUGGGUUUAGACC|GUC(GCGA)GACAGGUCG A.brierley 3200 GACUCUAAGG|GUAGGGGG-|UG-CAGGCCGCCU|GA|GGGGAA-GGUAC A.brierley 3250 CCC(UAGUAC(GAGA)GGAAC)AGGGUAC|CGGGGCCUCUAGUUUACCGG A.brierley 3300 U|UGUCC-(GGCA)-GGGCA-GUGCCGGGCA-GCCACGCCUCG-AGGGGU A.brierley 3350 AAUCGCU(GAAAGCAUCUA)AGCGAGAACCCCUCCCC|AAA-AAGAGGCG A.brierley 3400 GCC|G-|ugcagguggcc---------(gaaa-)---------ggcugcc A.brierley 3450 ugcg--ggagc|cc|ACUCC(UAGAAGA)GGGGGUUGAUGG|GGUGG|GG A.brierley 3500 GUGUAAGUCUCgagggc-(gaaa--)-guccgaGGGAU|UCAGCCC|G|C A.brierley 3550 CACUCCCAac--ggcaag--|cccaugcagu------||||| Tf.pendens 0 |---------------acggc--gcUAAGCCACCCGGUGGAUG|GCUCGG Tf.pendens 50 |CUCGGG-|cg|cCGAGGAAGGC|CGUG(GCAAGC)G|GCGAUACGCCCC Tf.pendens 100 GGG|GAGCC(GCAUGCA)GGCUUC-GAUCCGGGGAUC|GC-CGAAUGGG( Tf.pendens 150 ACCU-)CCU|gccguggg------(ucaa-)------cccac-ggc-gcu Tf.pendens 200 cgggaaa(cccgca--aggg)gaguaccgagcGGGAAC|CCCCCCAACG| Tf.pendens 250 GA(AACA)UCUUAGUAGGGGGAGGAGAAGAAACC(AA--UU)GGGA-U|C Tf.pendens 300 CCCUGAGUAGG(G-CGA)CCGAAAGGGGGAGAGCCCAaaccgaa-cguc- Tf.pendens 350 caugc(gaaga)gcaug-gacg-gaugugggguugc-aggg-ccccgcg- Tf.pendens 400 -----(-----)------uccccccuagcccggauagcc-GAAgucggc- Tf.pendens 450 (uggaaa)-gccgcgc|c(gua)gaGGG(UGACAGC)CCCGUA-ggcuaa Tf.pendens 500 auccggguggggga--uggcgggugucccuGAGUACCACGGCu(---ugg Tf.pendens 550 uuu)uGCCGUGGGAAG-CUGGGGG(GcaccgA-)CCUCCAAGGCUAAAUA Tf.pendens 600 cgu-CCCGAGACCGAUAGCGAACUAAGUACC(GUGA)GGGAAAGCUGAAA Tf.pendens 650 AGCACCCC(ggaag)GGGG-GUG-AAAAGAGCCUGAAACCGGGUGGCGac Tf.pendens 700 a-ggu-ggcgcggccc--gaaaggg--uagauccuccccgaaggaaaccc Tf.pendens 750 gg(gcga-)ccggg---gaguacgag-gggaggg-gaccg--gggucgcg Tf.pendens 800 ccuUACGU(CUAGAAA|C)ACGG|GCCGGGGAGUUCAC-GGCUGUGGCGA Tf.pendens 850 GCCUAAgggg(-uucaag)ccccGAAGGCGUAGG(GAAA)CCGacaagcc Tf.pendens 900 cguagccagcc(gcau)ggcugguguggggcggGGUCU(gaaa-)GGGCC Tf.pendens 950 CGUAGUCACAGCCGUGAGACCAGAAACCGAGCGAUCUAGGCCGGGG|CAG Tf.pendens 1000 GGUGAAGCCCGGC(GAAA)GCCGGGUGGAGGCCCG-aa-ggg-guucuga Tf.pendens 1050 (cgugca-au)uc-guu|cccauGACCUCGGCCUAGGGGC(AAAAG)ACC Tf.pendens 1100 AAUCAAGCUCGG-UGAUAGCUGGUUCCCCCCGAAGCGGAU(CCCA)GUCC Tf.pendens 1150 GGC|CCGCCCuga-|ggu|-ugCCGGUU|GGGUAG|GGC-ACUGAUUGGG Tf.pendens 1200 AGuccgG|GGACC(gaaa-)GGUCC-CA-GCUCCCUUUCAAACCCCGAAC Tf.pendens 1250 C|GACCGGcaccgu-aga|uGGGCGG-AGACGGGUUCU-GGCGG(A-UAA Tf.pendens 1300 G)CCGCCAG-GCCGAGAGGG(GAACAA)CCCAGACCGG-GGUUAAGGC|C Tf.pendens 1350 CCCAAGUGCCGGCUAaAGUGuca--agccagAAGGGUGUCCCCCGCCUUA Tf.pendens 1400 GACAGCGGGGCCGUAGGC(UUAGAAGCA)GCCAUCGG|C(UAA)G|AAGU Tf.pendens 1450 GC(GUAACA)GC|UUACCCGCCGAGGCGGGGGGC|CCCGAAGAUU-ACCG Tf.pendens 1500 GGACU-AAGCCGGC|C|GCCGAGACC|CCGG|ggcaccccgc(auu---) Tf.pendens 1550 gcggggugauccGGUAGGGGGG|CGUCCAGGU-GGACUGGAAGCCGGG-C Tf.pendens 1600 C(GUGA)GGUCCGGUGG|AUCCGCCUGGAAUGAAAAUCCCGGC|GGUAGU Tf.pendens 1650 AAGagcgcaaGAGGGG(UGAGAA-U)CCC-CUC|CGCCGAAA-GGGCAAG Tf.pendens 1700 GGUUCCUCAGCAACG-(GUCGU)CG|GCUGAGGGUUAGC|CGG|-UCCUA Tf.pendens 1750 AGGCGGC-CCU(UAACC)GGU---gccgccGAAA-GGGAAAGGGG(UUAA Tf.pendens 1800 UAUU)CCCCU|GC-cgugggg--uacgcuuugcg(-gcaa)cgcga-gcc Tf.pendens 1850 ccgc-uccugacgccucgggauaggggg|aguggg(-----ac-ugccgu Tf.pendens 1900 ------)cccauc|-caagcgcu-gaagccCGCUGAGUG-CC(GUCAU)G Tf.pendens 1950 G|CGAGAAGCG--gguga-aggcgcgaug-|ggc|ccgcc(--guua)gg Tf.pendens 2000 cggguu-cccccgacuccug-|gggcccgugaaaagggagcggggaa--- Tf.pendens 2050 ggag-ccccac--g|C|CCGUACCGAGAACC(GACACA)GG|UGCCCCUG Tf.pendens 2100 GG(ugaaaag)CCCAA-GGCGU||GGCGGG-G-UAAcCCAGGCUAGGGAA Tf.pendens 2150 CUCGGCAAAUUAGCCCCGUAAC(UUCG)GGAGAAGGGGU|GCCUGC---g Tf.pendens 2200 gucuug-ggg-(--cauac)-cccugggacc--GCAGGU|C(GCA)GUGA Tf.pendens 2250 CAAGGGGGACC|CGACUGU(UUAAUAAAA)ACAUAGGUCCCCG|CGAGCC Tf.pendens 2300 C(GAA-A)GGGUGAGUACGGGGGCUGAAUCCUGGCCACU|GGCGGUACGU Tf.pendens 2350 GAA----acccggg---(uaca)----accggg----cGAAGCG|CCGCC Tf.pendens 2400 GAAG|GCC|GGGAGU(AACUCUG)ACUCUC|U(UAA)GGUAGCCAAAUGC Tf.pendens 2450 CUU|GCCGGG(UA-----AGU)UCCGGC|GCGCAUGAAUGGAUCAACGAG Tf.pendens 2500 GUCCCCACUGUCCCAGCCUGGG-ACCCG|CUGAACCC|-GCAA--CCAGG Tf.pendens 2550 (-UGCAGA-GU)CCUGGGAGUCCCGGUGGGGCGAGAAGACCCCGUGG|AG Tf.pendens 2600 CUUCACAGC|AGCCUGGCGUU|GAGACACGGCUGCGGGUGCGUAGCGUAG Tf.pendens 2650 GCGGGAGCAAUGA----ACCUGGCCC(UCCG-)GGGUCAGG-GGAUGCGG Tf.pendens 2700 CCAUGAAACACCGCU|CACCUGCGGCUGUGUCCCuaac---cccggg(-g Tf.pendens 2750 uuu-)cccggg--ggacAGCGCCAGGUGGGCUGUUCGGCUG(GGG)CGGC Tf.pendens 2800 AC|ACCCCU(GAGAAGGUAUC)AGGGGU|G|C|CCAAAGCUCGGC|UCAG Tf.pendens 2850 GCGGG(UCAGAAC)UCCGCCGUAGA|GG(G|C-AAGG)CCAAAAGCCGGG Tf.pendens 2900 CUGACUGCGCCCU(uaaacgcgu-)GGGGCGCAGGCGG(GAAA)CCGGGG Tf.pendens 2950 |CCUAGCGAACGCUCGUGC-CCC(-cuucggug)GGG|GCCGGGC-auga Tf.pendens 3000 c|aga--aAAGUUACCC|CGGG|AGUAACCG|GCUCGUCGCGGGCGAGA( Tf.pendens 3050 GUUCACA)UCGACCCCGCGGUUUGGUACCCAGACGUC|GUCU|C|UUCCU Tf.pendens 3100 |AGCU|UGGCCCU(GCAGCA)GGGGCCAAGAGU|GGGGC(UGCUC)GCCC Tf.pendens 3150 AUUAAAAGGGAACGUGAGAUGGGUUUAGACC|GUC(GCGA)GACAGGUCG Tf.pendens 3200 GACUCUACCU|GCCGGGAC-|CG-UUGGCCGCCU|GA|GGGGAU-GGUCC Tf.pendens 3250 GCA(CAGUAC(GAGA)GGAAC)UGCGGGC|CGUGGCCUCUAGUGUACCGG Tf.pendens 3300 U|UGUCC-(GGCA)-GGGCA-cuGCCGGGCA-GCCACGCCGCA-AGGGGU Tf.pendens 3350 AACCGCU(GAAGGCAUCUA)AGCGGGAAACCCACCCC|GAG-ACGAGGCG Tf.pendens 3400 GCC|ac|ucccgauccguugcucccg-(gcga-)cgggg-gcuuuggguc Tf.pendens 3450 ggga--cgagg|gc|ACCCG(UAGAAGA)CGGGGUUGAUGG|GGUGG|CG Tf.pendens 3500 GUGUAUGCGCCgagg---(guuu--)---ccgaGGCGC|-GAGCCG|G|C Tf.pendens 3550 CACUCCCAauagcccgagg-|cugu----cuac----||||| C.symbio.A 0 |--ggcugaauaugccggugua-aagacGGCAAUAGGAGGAUU|GCUAGG C.symbio.A 50 |CUUGAG-|ga|GAGAAGAAGGA|CGUG(GCAAGC)U|GCGAUAAGCUCG C.symbio.A 100 GGG|UAGGU(GCACGCA)CCCGUU-GAUCCCGAGAUU|UC-CGAAUAGG( C.symbio.A 150 a-au-)CCU|---------------guaua------------------cu C.symbio.A 200 ccgc---(---gcaa-----)----gcggaggUCGAAC|CGUGGGAAUU| C.symbio.A 250 GA(AGCA)UCUUAGUACCACGAGGAAGAGAAAUC(AA--UA)GAGA-U|U C.symbio.A 300 UCCCAAGUAGA(GGCGA)UCGAAAAGGAAAGAGCCCAaacugaa-ucug- C.symbio.A 350 ccgcg(g-uaa)cgcgg-ccga-gaugugguguuuu---ggugcggcg-- C.symbio.A 400 -----(-----)-----caauggcc-ccaggaaauaguu-GAAguguuc- C.symbio.A 450 (ugaaau)-guuccgg|c(uua)gaGGG(UGAUACC)CCCcua-gacgaa C.symbio.A 500 guggaauggggcag---ggccagca-ccc-GAGUAGUUGUCCU(---ugg C.symbio.A 550 cag)UGGGCAGCGAAG-AUUGGUG(aaaguag-)CAUCAAAGGCUAAAUA C.symbio.A 600 ucu-CUCAAGACCGAUAGUGUACU-AGUACC(GUGA)GGGAAAGCUGAAA C.symbio.A 650 AGUACCCC(g-gaa)GGGGGGUG-AAAAGUGCAUGAAACCUAUUGCUuac C.symbio.A 700 agacg-ugcauggcau--gaaagac--gauuuuuucggaccgga-gguuc C.symbio.A 750 ca(gcaa-)uggagcu--gaaaguccggagcucaugucgucagugucaug C.symbio.A 800 cgUUCCGU(CUCGAAA|C)ACGG|GCCAGGGAGCUUGC-UGUCAUGGCGA C.symbio.A 850 GGUUAAgccu(---agaa)aggcguAGCCGAAGG(GAAA)CCGaa-uucu C.symbio.A 900 cgcagc-----(auu-)-----gugaggagaagCGUGU(gaaa-)GUGCG C.symbio.A 950 UUAAGUCAUGGCGGUAAGGCUAGAAGCCAGUCGAUCUAUUCCUGAG|CAA C.symbio.A 1000 GAUGAAGGUGGGC(GAAA)GCCCACUGGAGGUCUGca--gca-guucuga C.symbio.A 1050 (cgugca-ac)uc-guu|uguguGACUUGGGAAUAGGGGU(CAAAA)ACC C.symbio.A 1100 AAUCUAGACUGG-CGCUUGCUAGUUCCAACCGAAGCGUCU(CGCA)GGGC C.symbio.A 1150 GUG|CUAUGUGga-|gau|-GGUGUUUC|CGGUAG|AGC-ACUGAUAGGG C.symbio.A 1200 UGGcgcg|gggaa(gaga-)uuccu-ca-CCAUCCAUUCAAACUCCGAAC C.symbio.A 1250 G|GAUACAcaucgc-aga|aGCAUGG-ACACGGGUUCGUGUGAC(G-UAA C.symbio.A 1300 G)GUUC-ACGACCGAGAGGG(GUUUAA)CCCAGACUGG-AGUUAAGGU|C C.symbio.A 1350 CCCAAAUUUCUGCUA-AGUGuca---agccAAAGUGCGUGUCAUCGCCAA C.symbio.A 1400 GACAGCAGGGAGGUAAGC(UCAGAAGUA)GCUAUCCU|U(CAA)A|AAGU C.symbio.A 1450 GU(GUAACA)AC|UUACCUGCCGAGCGAGGGCGC|CACAAAAACGGACGG C.symbio.A 1500 GG-CUAAAGCAGAG|U|ACCGAUACU|CCAG|acgugcacc-(gugaua) C.symbio.A 1550 -ggugcac-cguGGUAGGUUGG|CGUAGUGAU-UGGGACGAAGCAGGG-C C.symbio.A 1600 G(GUGA)CGUCCUGUGG|ACCGAUUUCUAUUGCAGAUCCUGGU|GGCAGU C.symbio.A 1650 AACagca-uaGUGCGG(UGAGAA-U)CCG-CAC|CACCGUAA-GCGCAAG C.symbio.A 1700 GGUUUCCAGGCAAUGC(GUCGU)CA|GCCUGGAGUUAGU|CGA|-UCCUA C.symbio.A 1750 AGGACUGcCUC(-aaca)GAG---UAGUCCGAAU-GGGAAACCAG(UUAA C.symbio.A 1800 UAUU)CUGGU|AC-cuugcagggagcg------u(-uuga)a------cc C.symbio.A 1850 gcau-gguu--cgcuuccggauaggggg|aacaug(-----ac-cgucgu C.symbio.A 1900 ------)cguguc|-gaaccguucgagggcCUGGGAGUG-UC(GUAAU)G C.symbio.A 1950 A|CGAGAACAG--gcccg-aggcgggagu-|ggc|uuugc(--guua)gc C.symbio.A 2000 agaguu-uucccgauuccag-|gagaccaugaaa-gaccgugcggcua-- C.symbio.A 2050 gcaaacugcaa--g|U|UCGUACCCAGAUCC(GACACA)GG|UGCGC-UG C.symbio.A 2100 GU(uuaguaa)ACUAA-GGUGC||UACGGGuauaccGUAUGGCGAGGGAA C.symbio.A 2150 UUCGGCAAAUUAGUCCUGUAGC(UUAG)GUAUAAGGGAU|GCCUGC---a C.symbio.A 2200 gcuguc-au--(-gagga-)--auggcggca--GCAGGU|U(GCA)GUGA C.symbio.A 2250 CAAGGGGGUUU|CGACUGU(UUAAUAAAA)ACACAGGCGACUG|CUAGCC C.symbio.A 2300 C(GAA-A)GGGUAUGUAUAGUCGCUGAAUCCUGGCCGGU|GCCGGUAUCU C.symbio.A 2350 AAA----acuuggg---(uuca)----accgag----cUAAGGA|CCGGU C.symbio.A 2400 UAAC|GCC|GGGAGU(AACUCUG)ACUCUC|U(UAA)GGUAGCCAAAUGC C.symbio.A 2450 CUU|GUCGGG(UA-----AGU)UCCGAC|GUGCAUGAAUGGAACAACGAG C.symbio.A 2500 AGCCCCACUGUCCCCGCC-Uacaacccg|GUGAAGCC|acauaa-GGUGG C.symbio.A 2550 (acgaACA-GU)CCAUCAUCUUCCAUCGGGGAGAGAAGACCCCGUGG|AG C.symbio.A 2600 UUUUACUGC|AGCUUGUGCUU|GUGGUAUAGCAGGGAGUGCAUAGCGUAU C.symbio.A 2650 CUGGGAGUCAUUU---CCUGGCGUUC(UUUG-)GGACGUCA-GGGGACGC C.symbio.A 2700 CGAUGUAACACCAGA|CAUUUCCUGCAGUGCCACuuac----ccggu(-g C.symbio.A 2750 aag-)accgg---ggacaUGUGCAGGUGGGCAGUUCGGCUG(GGG)CGGC C.symbio.A 2800 AC|CCCUUU(GAAAAGAUAUC)AAAGGG|G|C|CCAAAGUUUAGU|UCAA C.symbio.A 2850 GCGGG(UCAGAAA)UCCGCUGAAGA|GG(G|C-AAAG)CCAAAAACUAGA C.symbio.A 2900 CUGAAUGGAUUUC(caaacgcac-)GGAAUUCAUAGAC(GAAA)GUCUGG C.symbio.A 2950 |CUUAGCGAUCCUUCGUGU-GCC(-cacuauug)GGG|CCCGGAG-guga C.symbio.A 3000 c|aga--aAAAUUACCC|CAGG|GAUAACAG|GCUCGUCGCGGGCGAGA( C.symbio.A 3050 GCUCCUA)UCGACCCCGCGGUUUGGUACCUCGAUGUC|GGCU|U|UUCCU C.symbio.A 3100 |AUCC|UGGUCCU(GCAGCA)GGGGCCAAGGGU|GAGGC(UGCUC)GCCU C.symbio.A 3150 AUUAAAAGGGAACAUGAGCUGGGUUUAGACC|GUC(GUGA)GACAGGUCG C.symbio.A 3200 GCCUCUGCCU|GAUGGAAG-|CG--CGAAUAUCU|GA|GGGGAA-GUCGC C.symbio.A 3250 UCU(UAGUAC(GAGA)GGAAC)AGAGAGG|CGUGGCCACUGGUCUACCGG C.symbio.A 3300 U|UGUCC-(GACA)-GGGCA--GGCCGGGCA-GCUAAGCCAUC-UAGGCU C.symbio.A 3350 AAGUGCU(GAAAGCAUCUA)AGCACGAAUCCUAUCCC|GAG-ACAAGAUA C.symbio.A 3400 UUC|c-|uuc-----------------(uucg-)---------------- C.symbio.A 3450 -gau--gaagg|uu|CGCAG(AAGAAGA)CUGCGUUGAUAG|GAAGG|UG C.symbio.A 3500 GUGUAuccCacaagc---(uucg--)---gcgagu-gg|ugAGCCA|G|C C.symbio.A 3550 CUUUACUAaucgaccaaa--|acaccgguu-------||||| C.symbio.B 0 |---gcugaauaugccggugua-aagacGGCAAUAGGAGGAUU|GCUAGG C.symbio.B 50 |CUUGAG-|ga|GAGAGGAAGGA|CGUG(GCAAGC)U|GCGAUAAGCUCG C.symbio.B 100 GGG|UAGGU(GCACGCA)CCCGUU-GAUCCCGAGAUU|UC-CGAAUAGG( C.symbio.B 150 a-au-)CCU|---------------guaua------------------cu C.symbio.B 200 ccgc---(---gcaa-----)----gcggaggUCGAAC|CGUGGGAAUU| C.symbio.B 250 GA(AGCA)UCUUAGUACCACGAGGAAGAGAAAUC(AA--UA)GAGA-U|U C.symbio.B 300 UCCCAAGUAGA(GGCGA)UCGAAAAGGAAAGAGCCCAaacugaa-ucug- C.symbio.B 350 ccgcg(g-uaa)cgcgg-ccga-gaugugguguuuu---ggugcggcg-- C.symbio.B 400 -----(-----)-----caauggcc-ccacgaaauaguc-AAAguguuc- C.symbio.B 450 (ugaaau)-guuccgg|c(uua)gaGGG(UGAUACC)CCCcua-gacgaa C.symbio.B 500 guggaauggggcag---ggccagca-ccc-GAGUAGUUGUCCU(---ugg C.symbio.B 550 cag)UGGGCAGCGAAG-AUUGGUG(aaaguag-)CAUCAAAGGCUAAAUA C.symbio.B 600 ucu-CUCAAGACCGAUAGUGUACU-AGUACC(GUGA)GGGAAAGCUGAAA C.symbio.B 650 AGUACCCC(g-gaa)GGGGGGUG-AAAAGUGCAUGAAACCUAUUGCUuac C.symbio.B 700 agacg-ugcacggcau--gaaagac--gauuuuuucggaccgga-gguuc C.symbio.B 750 ca(gcaa-)uggagcu--aaaaguccggagcucaugucgucagugucgug C.symbio.B 800 cgUUCCGU(CUCGAAA|C)ACGG|GCCAGGGAGCUUGC-UGUCAUGGCGA C.symbio.B 850 GGUUAAgccu(---agaa)aggcguAGCCGAAGG(GAAA)CCGaa-uucu C.symbio.B 900 cgcagc-----(auu-)-----gugaggagaagCGUGU(gaaa-)GUGCG C.symbio.B 950 UUGAGUCAUGGCGGUAAGGCUAGAAGCCAGUCGAUCUAUUCCUGAG|CAA C.symbio.B 1000 GAUGAAGGUGGGC(GAAA)GCCCACUGGAGGUCUGca--gca-guucuga C.symbio.B 1050 (cgugca-ac)uc-guu|uguguGACUUGGGAAUAGGGGU(CAAAA)ACC C.symbio.B 1100 AAUCUAGACUGG-CGCUUGCUAGUUCCAACCGAAGCGUCU(CGCA)GGGC C.symbio.B 1150 GUG|CUAUGUGga-|gau|-GGUGUUUC|CGGUAG|AGC-ACUGAUAGGG C.symbio.B 1200 UGGcgcg|gggaa(gaga-)uuccu-ca-CCAUCCAUUCAAACUCCGAAC C.symbio.B 1250 G|GAUACAcaucgc-aga|aGCAUGG-ACACGGGUUCGUGUGAC(G-UAA C.symbio.B 1300 G)GUUC-ACGACCGAGAGGG(GUUUAA)CCCAGACUGG-AGUUAAGGU|C C.symbio.B 1350 CCCAAAUUUCUGCUA-AGUGuca---agccAAAGUGCGUGUCGUCGCCAA C.symbio.B 1400 GACAGCAGGGAGGUAAGC(UCAGAAGUA)GCUAUCCU|U(CAA)A|AAGU C.symbio.B 1450 GU(GUAACA)AC|UUACCUGCCGAGCGAGGGCGC|CACAAAAACGGACGG C.symbio.B 1500 GG-CUAAAGCAGAG|U|ACCGAUACU|CCGG|acgugcacc-(guggca) C.symbio.B 1550 -ggugcac-cguGGUAGGUUGG|CGUAGUGAU-UGGGACGAAGCAGGG-C C.symbio.B 1600 G(GUGA)CGUCCUGUGG|ACCGAUUUCUAUUGCAGAUCCUGGC|GGCAGU C.symbio.B 1650 AACagca-uaGUGCGG(UGAGAA-U)CCG-CAC|CACCGAAA-GCGCAAG C.symbio.B 1700 GGUUUCCAGGCAAUGC(GUCGU)CA|GCCUGGAGUUAGU|CGA|-UCCUA C.symbio.B 1750 AGGGCUGcCUC(-aaca)GAG---UAGUCCGAAU-GGGAAACCAG(UUAA C.symbio.B 1800 UAUU)CUGGU|AC-cuugcagggagca------u(-uuga)a------cc C.symbio.B 1850 gcau-gguu--cgcuuccggauaggggg|agcaug(-----ac-cgucgu C.symbio.B 1900 ------)cguguc|-gaaccguucgagggcCUGGGAGUG-UC(GUAAU)G C.symbio.B 1950 A|CGAGAACAG--gcccg-aggcgggagu-|ggc|uuugc(--guua)gc C.symbio.B 2000 agaguu-cccccgacuccag-|gagaccaugaaa-gaccgugcggcua-- C.symbio.B 2050 gcaaacugcaa--g|U|UCGUACCCAGAUCC(GACACA)GG|UGCGC-UG C.symbio.B 2100 GU(uuaguaa)ACUAA-GGUGC||UACGGGuauaccGUAUGGCGAGGGAA C.symbio.B 2150 UUCGGCAAAUUAGUCCUGUAGC(UUAG)GUAUAAGGGAU|GCCUGC---a C.symbio.B 2200 gcuguc-au--(-gagga-)--auggcggca--GCAGGU|U(GCA)GUGA C.symbio.B 2250 CAAGGGGGUUU|CGACUGU(UUAAUAAAA)ACACAGGCGACUG|CUAGCC C.symbio.B 2300 C(GAA-A)GGGUAUGUAUAGUCGCUGAAUCCUGGCCGGU|GCCGGUAUCU C.symbio.B 2350 AAA----acuuggg---(uuca)----accgag----cUAAGGA|CCGGU C.symbio.B 2400 UAAC|GCC|GGGAGU(AACUCUG)ACUCUC|U(UAA)GGUAGCCAAAUGC C.symbio.B 2450 CUU|GUCGGG(UA-----AGU)UCCGAC|GUGCAUGAAUGGAACAACGAG C.symbio.B 2500 AGCCCCACUGUCCCCGCC-Uacaacccg|GUGAAGCC|acauaa-GGUGG C.symbio.B 2550 (acgaACA-GU)CCAUCAUCUUCCAUCGGGGAGAGAAGACCCCGUGG|AG C.symbio.B 2600 UUUUACUGC|AGCUUGUGCUU|GUGGUAUAGCAGGGAGUGCAUAGCGUAU C.symbio.B 2650 CUGGGAGUCUUUU---CCUGGCGUUC(UUUG-)GGACGUCA-GGGGACGC C.symbio.B 2700 CGAUGUAACACCAGA|CAUUUCCUGCAGUGCCACuuac----ccggu(-g C.symbio.B 2750 aag-)accgg---ggacaCGUGCAGGUGGGCAGUUCGGCUG(GGG)CGGC C.symbio.B 2800 AC|CCCUUU(GAAAAGAUAUC)AAAGGG|G|C|CCAAAGUUUAGU|UCAA C.symbio.B 2850 GCGGG(UCAGAAA)UCCGCUGAAGA|GG(G|C-AAAG)CCAAAAACUAGA C.symbio.B 2900 CUGAAUGGAUUUC(caaacgcac-)GGAAUUCAUAGAC(GAAA)GUCUGG C.symbio.B 2950 |CUUAGCGAUCCUUCGUGU-GCC(-cacuauug)GGG|CCCGGAG-guga C.symbio.B 3000 c|aga--aAAAUUACCC|CAGG|GAUAACAG|GCUCGUCGCGGGCGAGA( C.symbio.B 3050 GCUCCUA)UCGACCCCGCGGUUUGGUACCUCGAUGUC|GGCU|U|UUCCU C.symbio.B 3100 |AUCC|UGGUCCU(GCAGCA)GGGGCCAAGGGU|GAGGC(UGCUC)GCCU C.symbio.B 3150 AUUAAAAGGGAACAUGAGCUGGGUUUAGACC|GUC(GUGA)GACAGGUCG C.symbio.B 3200 GCCUCUGCCU|GAUGGAAG-|CG--CGAAUAUCU|GA|GGGGAA-GUCGC C.symbio.B 3250 UCC(UAGUAC(GAGA)GGAAC)AGAGAGG|CGUGGCCACUGGUCUACCGG C.symbio.B 3300 U|UGUCC-(GACA)-GGGCA--GGCCGGGCA-GCUAAGCCAUC-UAGGCU C.symbio.B 3350 AAGUGCU(GAAAGCAUCUA)AGCACGAAUCCUAUCCC|GAG-ACAAGAUA C.symbio.B 3400 UUC|c-|uuc-----------------(uucg-)---------------- C.symbio.B 3450 -gau--gaagg|uu|CGCAG(AAGAAGA)CUGCGUUGAUAG|GAAGG|UG C.symbio.B 3500 GUGUAaccCacaagc---(uucg--)---gcgagu-gg|agAGCCA|G|C C.symbio.B 3550 CUUUACUAaucgaccaaa--|acaccgguuc------|||||